RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GDPD5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035314

Ensembl transcript IDs: ENSMUST00000037528.10, ENSMUST00000208800.2, ENSMUST00000213887.2

Found 192 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCCCCAGAGGCCTGCTGGACAGTTGGGTGTGAGGCAGGACAGCCCTaGGCCTGTGATTCCGGTCCTCTCCAGCTGCTTCTCAGGGACAGA +
Preference number: 1 (lower is better)
Translates to: APEACWTVGCEAGQP*ACDSGPLQLLLRDR
Trigger: TCTGTCCCTGAGAAGCAGCTGGAGAGGACCGGAATCACAGGCTCAGGGCTGTCCTGCCTCACACCCAACTGTCCAGCAGGCCTCTGGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
3UTR TCA 90 bp TTCGCCCAGGTGGCCCATTGCCCTGTGGCCGCTGCTGTGGGAACCTaGGGTCAGATCAGTCTGTCGTTCACCTGGTCCTCAAGGCTTCTT +
Preference number: 1 (lower is better)
Translates to: FAQVAHCPVAAAVGT*GQISLSFTWSSRLL
Trigger: AAGAAGCCTTGAGGACCAGGTGAACGACAGACTGATCTGACCTCAGGTTCCCACAGCAGCGGCCACAGGGCAATGGGCCACCTGGGCGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
3UTR TCA 90 bp GTTCCTTCTACTGTAGGCAACTTTGGCCAGAGGCCCATGCTTGACTaGGCCCAATGTGCTTCGCCCAGGTGGCCCATTGCCCTGTGGCCG +
Preference number: 1 (lower is better)
Translates to: VPSTVGNFGQRPMLD*AQCASPRWPIALWP
Trigger: CGGCCACAGGGCAATGGGCCACCTGGGCGAAGCACATTGGGCTCAGTCAAGCATGGGCCTCTGGCCAAAGTTGCCTACAGTAGAAGGAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
3UTR CCA 90 bp CAATGTGCTTCGCCCAGGTGGCCCATTGCCCTGTGGCCGCTGCTGTaGGAACCTGAGGTCAGATCAGTCTGTCGTTCACCTGGTCCTCAA +
Preference number: 1 (lower is better)
Translates to: QCASPRWPIALWPLL*EPEVRSVCRSPGPQ
Trigger: TTGAGGACCAGGTGAACGACAGACTGATCTGACCTCAGGTTCCCACAGCAGCGGCCACAGGGCAATGGGCCACCTGGGCGAAGCACATTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
3UTR TCA 90 bp ATGACTATGAGAGTGGACCAGGAGATCAGGCCTTCGCTTCCTGGATaGAAAGCCCCAGGCCTGCAGGGGCATCTAGAGGCTGGAGTCCTG +
Preference number: 1 (lower is better)
Translates to: MTMRVDQEIRPSLPG*KAPGLQGHLEAGVL
Trigger: CAGGACTCCAGCCTCTAGATGCCCCTGCAGGCCTGGGGCTTTTCATCCAGGAAGCGAAGGCCTGATCTCCTGGTCCACTCTCATAGTCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
3UTR CCA 90 bp TCCAGCTGCTTCTCAGGGACAGAGAGGTCAGTGGTAGAAGGGAGCTaGTTGGGAGGAACGCATCTCCACCACAGCCACTGCTTTCTTCTC +
Preference number: 1 (lower is better)
Translates to: SSCFSGTERSVVEGS*LGGTHLHHSHCFLL
Trigger: GAGAAGAAAGCAGTGGCTGTGGTGGAGATGCGTTCCTCCCAACCAGCTCCCTTCTACCACTGACCTCTCTGTCCCTGAGAAGCAGCTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
3UTR GCA 90 bp CATTTTGGGGGCTGGAGGGATGGCTCAGTGGTTAAGAGCTCTGGCTaGTATTCTAGAGGACCCAAGTTTAGTTCCCAGCACCTCTATCAA +
Preference number: 1 (lower is better)
Translates to: HFGGWRDGSVVKSSG*YSRGPKFSSQHLYQ
Trigger: TTGATAGAGGTGCTGGGAACTAAACTTGGGTCCTCTAGAATAGCAGCCAGAGCTCTTAACCACTGAGCCATCCCTCCAGCCCCCAAAATG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR GCA 90 bp CAATTCAGAGACAACACACATCAAGATGGCAGCTTTAATTGTCTTTaGCCTTGGGTTCCTTCTACTGTAGGCAACTTTGGCCAGAGGCCC +
Preference number: 1 (lower is better)
Translates to: QFRDNTHQDGSFNCL*PWVPSTVGNFGQRP
Trigger: GGGCCTCTGGCCAAAGTTGCCTACAGTAGAAGGAACCCAAGGGCAAAGACAATTAAAGCTGCCATCTTGATGTGTGTTGTCTCTGAATTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR CCA 90 bp AGAGACAACACACATCAAGATGGCAGCTTTAATTGTCTTTGCCCTTaGGTTCCTTCTACTGTAGGCAACTTTGGCCAGAGGCCCATGCTT +
Preference number: 1 (lower is better)
Translates to: RDNTHQDGSFNCLCP*VPSTVGNFGQRPML
Trigger: AAGCATGGGCCTCTGGCCAAAGTTGCCTACAGTAGAAGGAACCCAAGGGCAAAGACAATTAAAGCTGCCATCTTGATGTGTGTTGTCTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR-3UTR GCA 90 bp GCTGGAGTCCTGGTCCAGCTGAGCCTCAGCGGAGAGGGCCCCTTTGGTCACCCCCCCGGGCCCTCTAGGTaGAGCTTCTTTTCATCAGAC +
Preference number: 2 (lower is better)
Translates to: AGVLVQLSLSGEGPFGHPPGPSR*SFFSSD
Trigger: GTCTGATGAAAAGAAGCTGCACCTAGAGGGCCCGGG...GGGGTGACCAAAGGGGCCCTCTCCGCTGAGGCTCAGCTGGACCAGGACTCCAGC
63% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
3UTR CAA 90 bp GGCCCATGCTTGACTGAGCCCAATGTGCTTCGCCCAGGTGGCCCATaGCCCTGTGGCCGCTGCTGTGGGAACCTGAGGTCAGATCAGTCT +
Preference number: 2 (lower is better)
Translates to: GPCLTEPNVLRPGGP*PCGRCCGNLRSDQS
Trigger: AGACTGATCTGACCTCAGGTTCCCACAGCAGCGGCCACAGGGCAATGGGCCACCTGGGCGAAGCACATTGGGCTCAGTCAAGCATGGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
3UTR-3UTR GCA 90 bp TGGCCGCTGCTGTGGGAACCTGAGGTCAGATCAGTCTGTCGTTCACCTGGTCCTTCTGCCCCAGAGGCCTaGTGGACAGTTGGGTGTGAG +
Preference number: 2 (lower is better)
Translates to: WPLLWEPEVRSVCRSPGPSAPEA*WTVGCE
Trigger: CTCACACCCAACTGTCCAGCAGGCCTCTGGGGCAGA...AGGACCAGGTGAACGACAGACTGATCTGACCTCAGGTTCCCACAGCAGCGGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
3UTR-3UTR TCA 90 bp TCCAGCTGCTTCTCAGGGACAGAGAGGTCAGTGGTAGAAGGGAGCTGGTTGGGACCTTCGCTTCCTGGATaGAAAGCCCCAGGCCTGCAG +
Preference number: 2 (lower is better)
Translates to: SSCFSGTERSVVEGSWLGPSLPG*KAPGLQ
Trigger: CTGCAGGCCTGGGGCTTTTCATCCAGGAAGCGAAGG...TCCCAACCAGCTCCCTTCTACCACTGACCTCTCTGTCCCTGAGAAGCAGCTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
3UTR-3UTR CCA 90 bp GGCTGGAGTCCTGGTCCAGCTGAGCCTCAGCGGAGAGGGCCCCTTTGGTCACCCTCATGCAAGAGAGACTaGAACAGACAAAGGAGCTTG +
Preference number: 2 (lower is better)
Translates to: GWSPGPAEPQRRGPLWSPSCKRD*NRQRSL
Trigger: CAAGCTCCTTTGTCTGTTCCAGTCTCTCTTGCATGA...GGGTGACCAAAGGGGCCCTCTCCGCTGAGGCTCAGCTGGACCAGGACTCCAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
3UTR-3UTR TCA 90 bp ACCCCAGCATGCTGGGTCCCCAAACTGCCACTGACAATTCAGAGACAACACACACTGGACAGTTGGGTGTaGGGCAGGACAGCCCTGAGC +
Preference number: 2 (lower is better)
Translates to: TPACWVPKLPLTIQRQHTLDSWV*GRTALS
Trigger: GCTCAGGGCTGTCCTGCCTCACACCCAACTGTCCAG...TGTGTGTTGTCTCTGAATTGTCAGTGGCAGTTTGGGGACCCAGCATGCTGGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR-3UTR GCA 90 bp TCTGGCGCTAGGTATTGGTTCTTAACTGCTGAGCCATCTCCCCAGCCCACTGGATTGCCCTGTGGCCGCTaGTGTGGGAACCTGAGGTCA +
Preference number: 2 (lower is better)
Translates to: SGARYWFLTAEPSPQPTGLPCGR*CGNLRS
Trigger: TGACCTCAGGTTCCCACAGCAGCGGCCACAGGGCAA...TCCAGTGGGCTGGGGAGATGGCTCAGCAGTTAAGAACCAATACCTAGCGCCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR-3UTR GCA 90 bp ACCCCAGCATGCTGGGTCCCCAAACTGCCACTGACAATTCAGAGACAACACACACCTCAAGGCTTCTTCTaGCCCAGAGGCCTGCTGGAC +
Preference number: 2 (lower is better)
Translates to: TPACWVPKLPLTIQRQHTPQGFF*PRGLLD
Trigger: GTCCAGCAGGCCTCTGGGGCAGAAGAAGCCTTGAGG...TGTGTGTTGTCTCTGAATTGTCAGTGGCAGTTTGGGGACCCAGCATGCTGGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR-3UTR CCA 90 bp GGGAACCTGAGGTCAGATCAGTCTGTCGTTCACCTGGTCCTCAAGGCTTCTTCTCCAACCCTTCCAGGCTaGGAGGCCAAGGATGACTAT +
Preference number: 2 (lower is better)
Translates to: GNLRSDQSVVHLVLKASSPTLPG*EAKDDY
Trigger: ATAGTCATCCTTGGCCTCCCAGCCTGGAAGGGTTGG...AGAAGAAGCCTTGAGGACCAGGTGAACGACAGACTGATCTGACCTCAGGTTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
3UTR-3UTR CCA 90 bp ATTCTAGAGGACCCAAGTTTAGTTCCCAGCACCTCTATCAAGTGGCTCACCACTTGGCCCATTGCCCTGTaGCCGCTGCTGTGGGAACCT +
Preference number: 2 (lower is better)
Translates to: ILEDPSLVPSTSIKWLTTWPIAL*PLLWEP
Trigger: AGGTTCCCACAGCAGCGGCCACAGGGCAATGGGCCA...AGTGGTGAGCCACTTGATAGAGGTGCTGGGAACTAAACTTGGGTCCTCTAGAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR-3UTR CCA 90 bp TTAAGCATAAGAGTTAAGGGTGTGGATGTAGGCTTCTCAAAGAGTAGCCCTGGCTGTGCTTCGCCCAGGTaGCCCATTGCCCTGTGGCCG +
Preference number: 2 (lower is better)
Translates to: LSIRVKGVDVGFSKSSPGCASPR*PIALWP
Trigger: CGGCCACAGGGCAATGGGCCACCTGGGCGAAGCACA...GCCAGGGCTACTCTTTGAGAAGCCTACATCCACACCCTTAACTCTTATGCTTAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR-3UTR TCA 90 bp TTAAGCATAAGAGTTAAGGGTGTGGATGTAGGCTTCTCAAAGAGTAGCCCTGGCAGGCCCATGCTTGACTaGGCCCAATGTGCTTCGCCC +
Preference number: 2 (lower is better)
Translates to: LSIRVKGVDVGFSKSSPGRPMLD*AQCASP
Trigger: GGGCGAAGCACATTGGGCTCAGTCAAGCATGGGCCT...GCCAGGGCTACTCTTTGAGAAGCCTACATCCACACCCTTAACTCTTATGCTTAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR-3UTR GCA 90 bp AAGGGAGGGACTCAGATATCCAGTAGTCTTCACTTTCATCTGCAAAATGGCTCTCCGGTCCTCTCCAGCTaGTTCTCAGGGACAGAGAGG +
Preference number: 2 (lower is better)
Translates to: KGGTQISSSLHFHLQNGSPVLSS*FSGTER
Trigger: CCTCTCTGTCCCTGAGAAGCAGCTGGAGAGGACCGG...AGAGCCATTTTGCAGATGAAAGTGAAGACTACTGGATATCTGAGTCCCTCCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR-3UTR CCA 90 bp TCTGGCGCTAGGTATTGGTTCTTAACTGCTGAGCCATCTCCCCAGCCCACTGGATCATGCAAGAGAGACTaGAACAGACAAAGGAGCTTG +
Preference number: 2 (lower is better)
Translates to: SGARYWFLTAEPSPQPTGSCKRD*NRQRSL
Trigger: CAAGCTCCTTTGTCTGTTCCAGTCTCTCTTGCATGA...TCCAGTGGGCTGGGGAGATGGCTCAGCAGTTAAGAACCAATACCTAGCGCCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR-3UTR TCA 90 bp TTTTTAAGCATAAGAGTTAAGGGTGTGGATGTAGGCTTCTCAAAGAGTAGCCCTCCTTCGCTTCCTGGATaGAAAGCCCCAGGCCTGCAG +
Preference number: 2 (lower is better)
Translates to: FLSIRVKGVDVGFSKSSPPSLPG*KAPGLQ
Trigger: CTGCAGGCCTGGGGCTTTTCATCCAGGAAGCGAAGG...AGGGCTACTCTTTGAGAAGCCTACATCCACACCCTTAACTCTTATGCTTAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR-3UTR GCA 90 bp AGAGACAACACACATCAAGATGGCAGCTTTAATTGTCTTTGCCCTTGGGTTCCTCCCGGGCCCTCTAGGTaGAGCTTCTTTTCATCAGAC +
Preference number: 2 (lower is better)
Translates to: RDNTHQDGSFNCLCPWVPPGPSR*SFFSSD
Trigger: GTCTGATGAAAAGAAGCTGCACCTAGAGGGCCCGGG...AGGAACCCAAGGGCAAAGACAATTAAAGCTGCCATCTTGATGTGTGTTGTCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR CAA 90 bp GATGTAGGCTTCTCAAAGAGTAGCCCTGGCTTTGCCTATGTGACTTaGGATGGTCACTTTAGCATCCTGCTCCACATAACTGAAGGGTGT +
Preference number: 2 (lower is better)
Translates to: DVGFSKSSPGFAYVT*DGHFSILLHITEGC
Trigger: ACACCCTTCAGTTATGTGGAGCAGGATGCTAAAGTGACCATCCAAAGTCACATAGGCAAAGCCAGGGCTACTCTTTGAGAAGCCTACATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR-3UTR TCA 90 bp ATTCTAGAGGACCCAAGTTTAGTTCCCAGCACCTCTATCAAGTGGCTCACCACTACTGCTTTCTTCTCCTaGGATGAACTTCCTTGTGCT +
Preference number: 2 (lower is better)
Translates to: ILEDPSLVPSTSIKWLTTTAFFS*DELPCA
Trigger: AGCACAAGGAAGTTCATCTCAGGAGAAGAAAGCAGT...AGTGGTGAGCCACTTGATAGAGGTGCTGGGAACTAAACTTGGGTCCTCTAGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR-3UTR TCA 90 bp ATTCTAGAGGACCCAAGTTTAGTTCCCAGCACCTCTATCAAGTGGCTCACCACTTTTCTTCTCCTGAGATaGACTTCCTTGTGCTTTGAG +
Preference number: 2 (lower is better)
Translates to: ILEDPSLVPSTSIKWLTTFLLLR*TSLCFE
Trigger: CTCAAAGCACAAGGAAGTTCATCTCAGGAGAAGAAA...AGTGGTGAGCCACTTGATAGAGGTGCTGGGAACTAAACTTGGGTCCTCTAGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR CCA 72 bp GCCCAATGTGCTTCGCCCAGGTGGCCCATTGCCCTGTaGCCGCTGCTGTGGGAACCTGAGGTCAGATCAGTC +
Preference number: 3 (lower is better)
Translates to: AQCASPRWPIAL*PLLWEPEVRSV
Trigger: GACTGATCTGACCTCAGGTTCCCACAGCAGCGGCCACAGGGCAATGGGCCACCTGGGCGAAGCACATTGGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
3UTR TCA 72 bp GTCCTCCACTTGCTTGTGGCACACGGCACAGCCCAGTaGCTCACCAACCCTTCCAGGCTGGGAGGCCAAGGA +
Preference number: 3 (lower is better)
Translates to: VLHLLVAHGTAQ*LTNPSRLGGQG
Trigger: TCCTTGGCCTCCCAGCCTGGAAGGGTTGGTGAGTCACTGGGCTGTGCCGTGTGCCACAAGCAAGTGGAGGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
3UTR TCA 72 bp GCCTGCTGGACAGTTGGGTGTGAGGCAGGACAGCCCTaGGCCTGTGATTCCGGTCCTCTCCAGCTGCTTCTC +
Preference number: 3 (lower is better)
Translates to: ACWTVGCEAGQP*ACDSGPLQLLL
Trigger: GAGAAGCAGCTGGAGAGGACCGGAATCACAGGCTCAGGGCTGTCCTGCCTCACACCCAACTGTCCAGCAGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
3UTR-3UTR CAA 90 bp TGGCCGCTGCTGTGGGAACCTGAGGTCAGATCAGTCTGTCGTTCACCTGGTCCTAGGCCTGCTGGACAGTaGGGTGTGAGGCAGGACAGC +
Preference number: 3 (lower is better)
Translates to: WPLLWEPEVRSVCRSPGPRPAGQ*GVRQDS
Trigger: GCTGTCCTGCCTCACACCCAACTGTCCAGCAGGCCT...AGGACCAGGTGAACGACAGACTGATCTGACCTCAGGTTCCCACAGCAGCGGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
3UTR-3UTR CAA 90 bp ACCCCAGCATGCTGGGTCCCCAAACTGCCACTGACAATTCAGAGACAACACACACGCCCAGGTGGCCCATaGCCCTGTGGCCGCTGCTGT +
Preference number: 3 (lower is better)
Translates to: TPACWVPKLPLTIQRQHTRPGGP*PCGRCC
Trigger: ACAGCAGCGGCCACAGGGCAATGGGCCACCTGGGCG...TGTGTGTTGTCTCTGAATTGTCAGTGGCAGTTTGGGGACCCAGCATGCTGGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR TCA 72 bp AGAGTGGACCAGGAGATCAGGCCTTCGCTTCCTGGATaGAAAGCCCCAGGCCTGCAGGGGCATCTAGAGGCT +
Preference number: 3 (lower is better)
Translates to: RVDQEIRPSLPG*KAPGLQGHLEA
Trigger: AGCCTCTAGATGCCCCTGCAGGCCTGGGGCTTTTCATCCAGGAAGCGAAGGCCTGATCTCCTGGTCCACTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
3UTR TCA 72 bp ACTGTAGGCAACTTTGGCCAGAGGCCCATGCTTGACTaGGCCCAATGTGCTTCGCCCAGGTGGCCCATTGCC +
Preference number: 3 (lower is better)
Translates to: TVGNFGQRPMLD*AQCASPRWPIA
Trigger: GGCAATGGGCCACCTGGGCGAAGCACATTGGGCTCAGTCAAGCATGGGCCTCTGGCCAAAGTTGCCTACAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
3UTR GCA 72 bp AGGTGTGGGCATAGGGAGACATCCACGTCCTCCACTTaGTTGTGGCACACGGCACAGCCCAGTGACTCACCA +
Preference number: 3 (lower is better)
Translates to: RCGHRETSTSST*LWHTAQPSDSP
Trigger: TGGTGAGTCACTGGGCTGTGCCGTGTGCCACAAGCAAGTGGAGGACGTGGATGTCTCCCTATGCCCACACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
3UTR CCA 72 bp ACGGCACAGCCCAGTGACTCACCAACCCTTCCAGGCTaGGAGGCCAAGGATGACTATGAGAGTGGACCAGGA +
Preference number: 3 (lower is better)
Translates to: TAQPSDSPTLPG*EAKDDYESGPG
Trigger: TCCTGGTCCACTCTCATAGTCATCCTTGGCCTCCCAGCCTGGAAGGGTTGGTGAGTCACTGGGCTGTGCCGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
3UTR-3UTR CAA 90 bp ACCCCAGCATGCTGGGTCCCCAAACTGCCACTGACAATTCAGAGACAACACACAAGGCCTGCTGGACAGTaGGGTGTGAGGCAGGACAGC +
Preference number: 3 (lower is better)
Translates to: TPACWVPKLPLTIQRQHTRPAGQ*GVRQDS
Trigger: GCTGTCCTGCCTCACACCCAACTGTCCAGCAGGCCT...TGTGTGTTGTCTCTGAATTGTCAGTGGCAGTTTGGGGACCCAGCATGCTGGGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR CCA 72 bp GAGGACCCAAGTTTAGTTCCCAGCACCTCTATCAAGTaGCTCACCACTGCTTGCAACTCCAGCTCCGGGAGA +
Preference number: 3 (lower is better)
Translates to: EDPSLVPSTSIK*LTTACNSSSGR
Trigger: TCTCCCGGAGCTGGAGTTGCAAGCAGTGGTGAGCCACTTGATAGAGGTGCTGGGAACTAAACTTGGGTCCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR TCA 72 bp TCCCAACCCCAGCATGCTGGGTCCCCAAACTGCCACTaGCAATTCAGAGACAACACACATCAAGATGGCAGC +
Preference number: 3 (lower is better)
Translates to: SQPQHAGSPNCH*QFRDNTHQDGS
Trigger: GCTGCCATCTTGATGTGTGTTGTCTCTGAATTGTCAGTGGCAGTTTGGGGACCCAGCATGCTGGGGTTGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR GCA 72 bp GGCTGGAGGGATGGCTCAGTGGTTAAGAGCTCTGGCTaGTATTCTAGAGGACCCAAGTTTAGTTCCCAGCAC +
Preference number: 3 (lower is better)
Translates to: GWRDGSVVKSSG*YSRGPKFSSQH
Trigger: GTGCTGGGAACTAAACTTGGGTCCTCTAGAATAGCAGCCAGAGCTCTTAACCACTGAGCCATCCCTCCAGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR CCA 72 bp GTCACAGATAGCTGTGAGTGTTCTGGCGCTAGGTATTaGTTCTTAACTGCTGAGCCATCTCCCCAGCCCACT +
Preference number: 3 (lower is better)
Translates to: VTDSCECSGARY*FLTAEPSPQPT
Trigger: AGTGGGCTGGGGAGATGGCTCAGCAGTTAAGAACCAATACCTAGCGCCAGAACACTCACAGCTATCTGTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR-3UTR CAA 90 bp GGGAACCTGAGGTCAGATCAGTCTGTCGTTCACCTGGTCCTCAAGGCTTCTTCTGAACTTCCTTGTGCTTaGAGATGGGTGCAGAGCGTA +
Preference number: 3 (lower is better)
Translates to: GNLRSDQSVVHLVLKASSELPCA*RWVQSV
Trigger: TACGCTCTGCACCCATCTCAAAGCACAAGGAAGTTC...AGAAGAAGCCTTGAGGACCAGGTGAACGACAGACTGATCTGACCTCAGGTTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
3UTR-3UTR CAA 90 bp CTGGCATCATGGCTGATCAAGGGAGGGACTCAGATATCCAGTAGTCTTCACTTTGTAGAAGGGAGCTGGTaGGGAGGAACGCATCTCCAC +
Preference number: 3 (lower is better)
Translates to: LASWLIKGGTQISSSLHFVEGSW*GGTHLH
Trigger: GTGGAGATGCGTTCCTCCCAACCAGCTCCCTTCTAC...AAAGTGAAGACTACTGGATATCTGAGTCCCTCCCTTGATCAGCCATGATGCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR TCA 72 bp CATCTCCACCACAGCCACTGCTTTCTTCTCCTGAGATaGACTTCCTTGTGCTTTGAGATGGGTGCAGAGCGT +
Preference number: 3 (lower is better)
Translates to: HLHHSHCFLLLR*TSLCFEMGAER
Trigger: ACGCTCTGCACCCATCTCAAAGCACAAGGAAGTTCATCTCAGGAGAAGAAAGCAGTGGCTGTGGTGGAGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
3UTR TCA 72 bp ACAATTCAGGGGCTGCTGAAGTCCTGGCATCATGGCTaGTCAAGGGAGGGACTCAGATATCCAGTAGTCTTC +
Preference number: 3 (lower is better)
Translates to: TIQGLLKSWHHG*SREGLRYPVVF
Trigger: GAAGACTACTGGATATCTGAGTCCCTCCCTTGATCAGCCATGATGCCAGGACTTCAGCAGCCCCTGAATTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR CCA 72 bp GTGTACAATTCAGGGGCTGCTGAAGTCCTGGCATCATaGCTGATCAAGGGAGGGACTCAGATATCCAGTAGT +
Preference number: 3 (lower is better)
Translates to: VYNSGAAEVLAS*LIKGGTQISSS
Trigger: ACTACTGGATATCTGAGTCCCTCCCTTGATCAGCCATGATGCCAGGACTTCAGCAGCCCCTGAATTGTACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR-3UTR CAA 90 bp AAGGGAGGGACTCAGATATCCAGTAGTCTTCACTTTCATCTGCAAAATGGCTCTGAACTTCCTTGTGCTTaGAGATGGGTGCAGAGCGTA +
Preference number: 3 (lower is better)
Translates to: KGGTQISSSLHFHLQNGSELPCA*RWVQSV
Trigger: TACGCTCTGCACCCATCTCAAAGCACAAGGAAGTTC...AGAGCCATTTTGCAGATGAAAGTGAAGACTACTGGATATCTGAGTCCCTCCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR CCA 72 bp ACACATCAAGATGGCAGCTTTAATTGTCTTTGCCCTTaGGTTCCTTCTACTGTAGGCAACTTTGGCCAGAGG +
Preference number: 3 (lower is better)
Translates to: THQDGSFNCLCP*VPSTVGNFGQR
Trigger: CCTCTGGCCAAAGTTGCCTACAGTAGAAGGAACCCAAGGGCAAAGACAATTAAAGCTGCCATCTTGATGTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR GCA 72 bp GACAACACACATCAAGATGGCAGCTTTAATTGTCTTTaGCCTTGGGTTCCTTCTACTGTAGGCAACTTTGGC +
Preference number: 3 (lower is better)
Translates to: DNTHQDGSFNCL*PWVPSTVGNFG
Trigger: GCCAAAGTTGCCTACAGTAGAAGGAACCCAAGGGCAAAGACAATTAAAGCTGCCATCTTGATGTGTGTTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR CCA 90 bp GGCTGGAGTCCTGGTCCAGCTGAGCCTCAGCGGAGAGGGCCCCTTTGGTCACCCGTTCTGGAGCCAGCATaGGAGCCCCTCGGTGGCCGA +
Preference number: 4 (lower is better)
Translates to: GWSPGPAEPQRRGPLWSPVLEPA*EPLGGR
Trigger: TCGGCCACCGAGGGGCTCCCATGCTGGCTCCAGAAC...GGGTGACCAAAGGGGCCCTCTCCGCTGAGGCTCAGCTGGACCAGGACTCCAGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR TCA 90 bp GCTGGAGTCCTGGTCCAGCTGAGCCTCAGCGGAGAGGGCCCCTTTGGTCACCCCGCAGGACAGTCCAGTTaGGCATGGCAGCAGGCCTGC +
Preference number: 4 (lower is better)
Translates to: AGVLVQLSLSGEGPFGHPAGQSS*AWQQAC
Trigger: GCAGGCCTGCTGCCATGCTCAACTGGACTGTCCTGC...GGGGTGACCAAAGGGGCCCTCTCCGCTGAGGCTCAGCTGGACCAGGACTCCAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR GCA 90 bp GCTGGAGTCCTGGTCCAGCTGAGCCTCAGCGGAGAGGGCCCCTTTGGTCACCCCAGCCCATACAGCCTCTaGTCCAGCGCCTTCCGGAAG +
Preference number: 4 (lower is better)
Translates to: AGVLVQLSLSGEGPFGHPSPYSL*SSAFRK
Trigger: CTTCCGGAAGGCGCTGGAGCAGAGGCTGTATGGGCT...GGGGTGACCAAAGGGGCCCTCTCCGCTGAGGCTCAGCTGGACCAGGACTCCAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR CCA 90 bp GGCTGGAGTCCTGGTCCAGCTGAGCCTCAGCGGAGAGGGCCCCTTTGGTCACCCCATCACTGTGTGTTCTaGAGCCAGCATGGGAGCCCC +
Preference number: 4 (lower is better)
Translates to: GWSPGPAEPQRRGPLWSPHHCVF*SQHGSP
Trigger: GGGGCTCCCATGCTGGCTCCAGAACACACAGTGATG...GGGTGACCAAAGGGGCCCTCTCCGCTGAGGCTCAGCTGGACCAGGACTCCAGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR CCA 90 bp GCTGGAGTCCTGGTCCAGCTGAGCCTCAGCGGAGAGGGCCCCTTTGGTCACCCCCTGCCAGGCTGCAGATaGACTGGTTCTGAACCTCCC +
Preference number: 4 (lower is better)
Translates to: AGVLVQLSLSGEGPFGHPLPGCR*TGSEPP
Trigger: GGGAGGTTCAGAACCAGTCCATCTGCAGCCTGGCAG...GGGGTGACCAAAGGGGCCCTCTCCGCTGAGGCTCAGCTGGACCAGGACTCCAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR TCA 90 bp TGGCCGCTGCTGTGGGAACCTGAGGTCAGATCAGTCTGTCGTTCACCTGGTCCTGTGCTGGGGGAAGCCTaGACGCAGCACGGCCTCCAG +
Preference number: 4 (lower is better)
Translates to: WPLLWEPEVRSVCRSPGPVLGEA*TQHGLQ
Trigger: CTGGAGGCCGTGCTGCGTTCAGGCTTCCCCCAGCAC...AGGACCAGGTGAACGACAGACTGATCTGACCTCAGGTTCCCACAGCAGCGGCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR GCA 90 bp GGCTGGAGTCCTGGTCCAGCTGAGCCTCAGCGGAGAGGGCCCCTTTGGTCACCCCGCTCCAGTAGCCCATaGGGTTGTAGAGGTACCAGT +
Preference number: 4 (lower is better)
Translates to: GWSPGPAEPQRRGPLWSPRSSSP*GCRGTS
Trigger: ACTGGTACCTCTACAACCGCATGGGCTACTGGAGCG...GGGTGACCAAAGGGGCCCTCTCCGCTGAGGCTCAGCTGGACCAGGACTCCAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR CCA 90 bp GGCTGGAGTCCTGGTCCAGCTGAGCCTCAGCGGAGAGGGCCCCTTTGGTCACCCGGGCATGATCCAGAGTaGAGAAGGCACCCGAGAAAG +
Preference number: 4 (lower is better)
Translates to: GWSPGPAEPQRRGPLWSPGHDPE*RRHPRK
Trigger: CTTTCTCGGGTGCCTTCTCCACTCTGGATCATGCCC...GGGTGACCAAAGGGGCCCTCTCCGCTGAGGCTCAGCTGGACCAGGACTCCAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR TCA 90 bp AGCTTGGAGCACATAAGTAGGCTGAGGAGCCAGCTCCCGGGCCCTCTAGGTGCATCCAGGAGAGTGCAGTaGTGGCCACCAGGGCCCCTA +
Preference number: 4 (lower is better)
Translates to: SLEHISRLRSQLPGPLGASRRVQ*WPPGPL
Trigger: TAGGGGCCCTGGTGGCCATCACTGCACTCTCCTGGA...TGCACCTAGAGGGCCCGGGAGCTGGCTCCTCAGCCTACTTATGTGCTCCAAGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR TCA 90 bp GGCTGGAGTCCTGGTCCAGCTGAGCCTCAGCGGAGAGGGCCCCTTTGGTCACCCAGGTACAAAGAATGGTaGGCTGAGAGGAGGACCGCT +
Preference number: 4 (lower is better)
Translates to: GWSPGPAEPQRRGPLWSPRYKEW*AERRTA
Trigger: AGCGGTCCTCCTCTCAGCTCACCATTCTTTGTACCT...GGGTGACCAAAGGGGCCCTCTCCGCTGAGGCTCAGCTGGACCAGGACTCCAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR TCA 90 bp GCTGGAGTCCTGGTCCAGCTGAGCCTCAGCGGAGAGGGCCCCTTTGGTCACCCCAGGTACAAAGAATGGTaGGCTGAGAGGAGGACCGCT +
Preference number: 4 (lower is better)
Translates to: AGVLVQLSLSGEGPFGHPRYKEW*AERRTA
Trigger: AGCGGTCCTCCTCTCAGCTCACCATTCTTTGTACCT...GGGGTGACCAAAGGGGCCCTCTCCGCTGAGGCTCAGCTGGACCAGGACTCCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR TCA 90 bp GCTGGAGTCCTGGTCCAGCTGAGCCTCAGCGGAGAGGGCCCCTTTGGTCACCCCAGAGCCACGGTGCATTaGCAGTGTACAGGTTCACAC +
Preference number: 4 (lower is better)
Translates to: AGVLVQLSLSGEGPFGHPRATVH*QCTGSH
Trigger: GTGTGAACCTGTACACTGTCAATGCACCGTGGCTCT...GGGGTGACCAAAGGGGCCCTCTCCGCTGAGGCTCAGCTGGACCAGGACTCCAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR TCA 90 bp AGACAAAGGAGCTTGGAGCACATAAGTAGGCTGAGGAGCCAGCTCCCGGGCCCTGGGAGTTGTCGGAAGTaGCGGAGGGGACCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: RQRSLEHISRLRSQLPGPGSCRK*RRGPQH
Trigger: GTGCTGGGGTCCCCTCCGTCACTTCCGACAACTCCC...AGGGCCCGGGAGCTGGCTCCTCAGCCTACTTATGTGCTCCAAGCTCCTTTGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR GCA 90 bp GGCTGGAGTCCTGGTCCAGCTGAGCCTCAGCGGAGAGGGCCCCTTTGGTCACCCATGGTGATGTCAGCTTaGAGCCCATACAGCCTCTGC +
Preference number: 4 (lower is better)
Translates to: GWSPGPAEPQRRGPLWSPMVMSA*SPYSLC
Trigger: GCAGAGGCTGTATGGGCTGCAAGCTGACATCACCAT...GGGTGACCAAAGGGGCCCTCTCCGCTGAGGCTCAGCTGGACCAGGACTCCAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR CCA 90 bp TGGCCGCTGCTGTGGGAACCTGAGGTCAGATCAGTCTGTCGTTCACCTGGTCCTGGGCCACTGCAGACATaGCCACCACCGTGGAGGCCA +
Preference number: 4 (lower is better)
Translates to: WPLLWEPEVRSVCRSPGPGPLQT*PPPWRP
Trigger: TGGCCTCCACGGTGGTGGCCATGTCTGCAGTGGCCC...AGGACCAGGTGAACGACAGACTGATCTGACCTCAGGTTCCCACAGCAGCGGCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR CCA 90 bp GCTGGAGTCCTGGTCCAGCTGAGCCTCAGCGGAGAGGGCCCCTTTGGTCACCCCAATAGCCACATGACCTaGTGCTGGGGGAAGCCTGAA +
Preference number: 4 (lower is better)
Translates to: AGVLVQLSLSGEGPFGHPNSHMT*CWGKPE
Trigger: TTCAGGCTTCCCCCAGCACCAGGTCATGTGGCTATT...GGGGTGACCAAAGGGGCCCTCTCCGCTGAGGCTCAGCTGGACCAGGACTCCAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR TCA 90 bp AGACAAAGGAGCTTGGAGCACATAAGTAGGCTGAGGAGCCAGCTCCCGGGCCCTTCCAGGAGAGTGCAGTaGTGGCCACCAGGGCCCCTA +
Preference number: 4 (lower is better)
Translates to: RQRSLEHISRLRSQLPGPSRRVQ*WPPGPL
Trigger: TAGGGGCCCTGGTGGCCATCACTGCACTCTCCTGGA...AGGGCCCGGGAGCTGGCTCCTCAGCCTACTTATGTGCTCCAAGCTCCTTTGTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR TCA 90 bp GGCTGGAGTCCTGGTCCAGCTGAGCCTCAGCGGAGAGGGCCCCTTTGGTCACCCGTCGTAACTGCTGTCTaGACATACGGAGAGCTCATC +
Preference number: 4 (lower is better)
Translates to: GWSPGPAEPQRRGPLWSPVVTAV*TYGELI
Trigger: GATGAGCTCTCCGTATGTTCAGACAGCAGTTACGAC...GGGTGACCAAAGGGGCCCTCTCCGCTGAGGCTCAGCTGGACCAGGACTCCAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR GCA 90 bp GCTGGAGTCCTGGTCCAGCTGAGCCTCAGCGGAGAGGGCCCCTTTGGTCACCCCGGAGAAGAGCCACGGTaGATTGACAGTGTACAGGTT +
Preference number: 4 (lower is better)
Translates to: AGVLVQLSLSGEGPFGHPGEEPR*IDSVQV
Trigger: AACCTGTACACTGTCAATGCACCGTGGCTCTTCTCC...GGGGTGACCAAAGGGGCCCTCTCCGCTGAGGCTCAGCTGGACCAGGACTCCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR CCA 90 bp TCACCAACCCTTCCAGGCTGGGAGGCCAAGGATGACTATGAGAGTGGACCAGGACCGAGGTCACCAGGATaGGCACGGACCAGTCGCTCC +
Preference number: 4 (lower is better)
Translates to: SPTLPGWEAKDDYESGPGPRSPG*ARTSRS
Trigger: GGAGCGACTGGTCCGTGCCCATCCTGGTGACCTCGG...TCCTGGTCCACTCTCATAGTCATCCTTGGCCTCCCAGCCTGGAAGGGTTGGTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR CCA 90 bp CCTGAGGTCAGATCAGTCTGTCGTTCACCTGGTCCTCAAGGCTTCTTCTGCCCCGGGCCACTGCAGACATaGCCACCACCGTGGAGGCCA +
Preference number: 4 (lower is better)
Translates to: PEVRSVCRSPGPQGFFCPGPLQT*PPPWRP
Trigger: TGGCCTCCACGGTGGTGGCCATGTCTGCAGTGGCCC...GGGGCAGAAGAAGCCTTGAGGACCAGGTGAACGACAGACTGATCTGACCTCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR GCA 90 bp AGACAAAGGAGCTTGGAGCACATAAGTAGGCTGAGGAGCCAGCTCCCGGGCCCTAGAGGAGGACCGCTCTaGACGGGCAAACTGTCCAGC +
Preference number: 4 (lower is better)
Translates to: RQRSLEHISRLRSQLPGPRGGPL*TGKLSS
Trigger: GCTGGACAGTTTGCCCGTGCAGAGCGGTCCTCCTCT...AGGGCCCGGGAGCTGGCTCCTCAGCCTACTTATGTGCTCCAAGCTCCTTTGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR TCA 90 bp TCCAGCTGCTTCTCAGGGACAGAGAGGTCAGTGGTAGAAGGGAGCTGGTTGGGAGATGCCTGTGAGGCATaGGAGGCACAGTTGGGGCTC +
Preference number: 4 (lower is better)
Translates to: SSCFSGTERSVVEGSWLGDACEA*EAQLGL
Trigger: GAGCCCCAACTGTGCCTCTCATGCCTCACAGGCATC...TCCCAACCAGCTCCCTTCTACCACTGACCTCTCTGTCCCTGAGAAGCAGCTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR TCA 90 bp AGACAAAGGAGCTTGGAGCACATAAGTAGGCTGAGGAGCCAGCTCCCGGGCCCTACTCGTCTGGGGGCATaGTCCAGAGTGGAGAAGGCA +
Preference number: 4 (lower is better)
Translates to: RQRSLEHISRLRSQLPGPTRLGA*SRVEKA
Trigger: TGCCTTCTCCACTCTGGATCATGCCCCCAGACGAGT...AGGGCCCGGGAGCTGGCTCCTCAGCCTACTTATGTGCTCCAAGCTCCTTTGTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR GCA 90 bp TCACCAACCCTTCCAGGCTGGGAGGCCAAGGATGACTATGAGAGTGGACCAGGAGACGATCCAGGAGAGTaGAGTGATGGCCACCAGGGC +
Preference number: 4 (lower is better)
Translates to: SPTLPGWEAKDDYESGPGDDPGE*SDGHQG
Trigger: GCCCTGGTGGCCATCACTGCACTCTCCTGGATCGTC...TCCTGGTCCACTCTCATAGTCATCCTTGGCCTCCCAGCCTGGAAGGGTTGGTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR GCA 90 bp CCTGAGGTCAGATCAGTCTGTCGTTCACCTGGTCCTCAAGGCTTCTTCTGCCCCCAGCTCCAGCAGCTCTaGCAGGCTGCAGATGGACTG +
Preference number: 4 (lower is better)
Translates to: PEVRSVCRSPGPQGFFCPQLQQL*QAADGL
Trigger: CAGTCCATCTGCAGCCTGGCAGAGCTGCTGGAGCTG...GGGGCAGAAGAAGCCTTGAGGACCAGGTGAACGACAGACTGATCTGACCTCAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR GCA 90 bp TCCAGCTGCTTCTCAGGGACAGAGAGGTCAGTGGTAGAAGGGAGCTGGTTGGGACAGCTCCAGCAGCTCTaGCAGGCTGCAGATGGACTG +
Preference number: 4 (lower is better)
Translates to: SSCFSGTERSVVEGSWLGQLQQL*QAADGL
Trigger: CAGTCCATCTGCAGCCTGGCAGAGCTGCTGGAGCTG...TCCCAACCAGCTCCCTTCTACCACTGACCTCTCTGTCCCTGAGAAGCAGCTGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR CCA 90 bp GGGAACCTGAGGTCAGATCAGTCTGTCGTTCACCTGGTCCTCAAGGCTTCTTCTAGGGTGACAGGGAGCTaGCCGTCCAGAAGGGGTCGG +
Preference number: 4 (lower is better)
Translates to: GNLRSDQSVVHLVLKASSRVTGS*PSRRGR
Trigger: CCGACCCCTTCTGGACGGCCAGCTCCCTGTCACCCT...AGAAGAAGCCTTGAGGACCAGGTGAACGACAGACTGATCTGACCTCAGGTTCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR TCA 90 bp AGCTTGGAGCACATAAGTAGGCTGAGGAGCCAGCTCCCGGGCCCTCTAGGTGCAAGCCATAGATGCCTGTaGGGCATGAGAGGCACAGTT +
Preference number: 4 (lower is better)
Translates to: SLEHISRLRSQLPGPLGASHRCL*GMRGTV
Trigger: AACTGTGCCTCTCATGCCTCACAGGCATCTATGGCT...TGCACCTAGAGGGCCCGGGAGCTGGCTCCTCAGCCTACTTATGTGCTCCAAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR TCA 90 bp TCTGGCGCTAGGTATTGGTTCTTAACTGCTGAGCCATCTCCCCAGCCCACTGGATGCCCCACAGCGATGTaGCATAGTGCCAGGACCAGG +
Preference number: 4 (lower is better)
Translates to: SGARYWFLTAEPSPQPTGCPTAM*HSARTR
Trigger: CCTGGTCCTGGCACTATGTCACATCGCTGTGGGGCA...TCCAGTGGGCTGGGGAGATGGCTCAGCAGTTAAGAACCAATACCTAGCGCCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR GCA 90 bp TGGCCGCTGCTGTGGGAACCTGAGGTCAGATCAGTCTGTCGTTCACCTGGTCCTCAGGACCAGGAGGCCTaGGATGTATGTGAAAGCAGC +
Preference number: 4 (lower is better)
Translates to: WPLLWEPEVRSVCRSPGPQDQEA*DVCESS
Trigger: GCTGCTTTCACATACATCGCAGGCCTCCTGGTCCTG...AGGACCAGGTGAACGACAGACTGATCTGACCTCAGGTTCCCACAGCAGCGGCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR GCA 90 bp AGACAAAGGAGCTTGGAGCACATAAGTAGGCTGAGGAGCCAGCTCCCGGGCCCTGCAGCTCTGCCAGGCTaGAGATGGACTGGTTCTGAA +
Preference number: 4 (lower is better)
Translates to: RQRSLEHISRLRSQLPGPAALPG*RWTGSE
Trigger: TTCAGAACCAGTCCATCTGCAGCCTGGCAGAGCTGC...AGGGCCCGGGAGCTGGCTCCTCAGCCTACTTATGTGCTCCAAGCTCCTTTGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR CCA 90 bp TCTGGCGCTAGGTATTGGTTCTTAACTGCTGAGCCATCTCCCCAGCCCACTGGACCCAGGCGCCACTTCTaGAGCACGAAGATGCCGATG +
Preference number: 4 (lower is better)
Translates to: SGARYWFLTAEPSPQPTGPRRHF*STKMPM
Trigger: CATCGGCATCTTCGTGCTCCAGAAGTGGCGCCTGGG...TCCAGTGGGCTGGGGAGATGGCTCAGCAGTTAAGAACCAATACCTAGCGCCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR TCA 90 bp CCTGAGGTCAGATCAGTCTGTCGTTCACCTGGTCCTCAAGGCTTCTTCTGCCCCGGATCAGGTAGAAGGTaGAGACCACGGCGAAGAAGG +
Preference number: 4 (lower is better)
Translates to: PEVRSVCRSPGPQGFFCPGSGRR*RPRRRR
Trigger: CCTTCTTCGCCGTGGTCTTCACCTTCTACCTGATCC...GGGGCAGAAGAAGCCTTGAGGACCAGGTGAACGACAGACTGATCTGACCTCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR TCA 90 bp CCTTCCTCTCTTCTAGGTTCTACCTTGGGTACAAGTTGGGCAGACAGATCTTCACCTGTGGTCGGAGGGTaGCAGGGAGCTGGCCGTCCA +
Preference number: 4 (lower is better)
Translates to: PSSLLGSTLGTSWADRSSPVVGG*QGAGRP
Trigger: TGGACGGCCAGCTCCCTGTCACCCTCCGACCACAGG...TGAAGATCTGTCTGCCCAACTTGTACCCAAGGTAGAACCTAGAAGAGAGGAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR TCA 90 bp ATTCTAGAGGACCCAAGTTTAGTTCCCAGCACCTCTATCAAGTGGCTCACCACTGTGCTGGGGGAAGCCTaGACGCAGCACGGCCTCCAG +
Preference number: 4 (lower is better)
Translates to: ILEDPSLVPSTSIKWLTTVLGEA*TQHGLQ
Trigger: CTGGAGGCCGTGCTGCGTTCAGGCTTCCCCCAGCAC...AGTGGTGAGCCACTTGATAGAGGTGCTGGGAACTAAACTTGGGTCCTCTAGAAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR GCA 90 bp TCCAGCTGCTTCTCAGGGACAGAGAGGTCAGTGGTAGAAGGGAGCTGGTTGGGACGCTCCAGTAGCCCATaGGGTTGTAGAGGTACCAGT +
Preference number: 4 (lower is better)
Translates to: SSCFSGTERSVVEGSWLGRSSSP*GCRGTS
Trigger: ACTGGTACCTCTACAACCGCATGGGCTACTGGAGCG...TCCCAACCAGCTCCCTTCTACCACTGACCTCTCTGTCCCTGAGAAGCAGCTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR GCA 90 bp AGAGGACCCAAGTTTAGTTCCCAGCACCTCTATCAAGTGGCTCACCACTGCTTGCCAGAGCTGGGCCACTaGAGACATGGCCACCACCGT +
Preference number: 4 (lower is better)
Translates to: RGPKFSSQHLYQVAHHCLPELGH*RHGHHR
Trigger: ACGGTGGTGGCCATGTCTGCAGTGGCCCAGCTCTGG...CAAGCAGTGGTGAGCCACTTGATAGAGGTGCTGGGAACTAAACTTGGGTCCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR GCA 90 bp GGGAACCTGAGGTCAGATCAGTCTGTCGTTCACCTGGTCCTCAAGGCTTCTTCTAGAGGAGGACCGCTCTaGACGGGCAAACTGTCCAGC +
Preference number: 4 (lower is better)
Translates to: GNLRSDQSVVHLVLKASSRGGPL*TGKLSS
Trigger: GCTGGACAGTTTGCCCGTGCAGAGCGGTCCTCCTCT...AGAAGAAGCCTTGAGGACCAGGTGAACGACAGACTGATCTGACCTCAGGTTCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR CCA 90 bp GGGAACCTGAGGTCAGATCAGTCTGTCGTTCACCTGGTCCTCAAGGCTTCTTCTCACATGACCTGGTGCTaGGGGAAGCCTGAACGCAGC +
Preference number: 4 (lower is better)
Translates to: GNLRSDQSVVHLVLKASSHMTWC*GKPERS
Trigger: GCTGCGTTCAGGCTTCCCCCAGCACCAGGTCATGTG...AGAAGAAGCCTTGAGGACCAGGTGAACGACAGACTGATCTGACCTCAGGTTCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR CCA 90 bp CCTGAGGTCAGATCAGTCTGTCGTTCACCTGGTCCTCAAGGCTTCTTCTGCCCCGGGCATGATCCAGAGTaGAGAAGGCACCCGAGAAAG +
Preference number: 4 (lower is better)
Translates to: PEVRSVCRSPGPQGFFCPGHDPE*RRHPRK
Trigger: CTTTCTCGGGTGCCTTCTCCACTCTGGATCATGCCC...GGGGCAGAAGAAGCCTTGAGGACCAGGTGAACGACAGACTGATCTGACCTCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR TCA 90 bp TCACCAACCCTTCCAGGCTGGGAGGCCAAGGATGACTATGAGAGTGGACCAGGAAGCCATAGATGCCTGTaGGGCATGAGAGGCACAGTT +
Preference number: 4 (lower is better)
Translates to: SPTLPGWEAKDDYESGPGSHRCL*GMRGTV
Trigger: AACTGTGCCTCTCATGCCTCACAGGCATCTATGGCT...TCCTGGTCCACTCTCATAGTCATCCTTGGCCTCCCAGCCTGGAAGGGTTGGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR TCA 90 bp GGGAACCTGAGGTCAGATCAGTCTGTCGTTCACCTGGTCCTCAAGGCTTCTTCTCAGATGGACTGGTTCTaGACCTCCCTGTGGTCGGAG +
Preference number: 4 (lower is better)
Translates to: GNLRSDQSVVHLVLKASSQMDWF*TSLWSE
Trigger: CTCCGACCACAGGGAGGTTCAGAACCAGTCCATCTG...AGAAGAAGCCTTGAGGACCAGGTGAACGACAGACTGATCTGACCTCAGGTTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR TCA 90 bp GCTGGAGTCCTGGTCCAGCTGAGCCTCAGCGGAGAGGGCCCCTTTGGTCACCCCACCATCACTGATCTCTaGGAAGATGAGTTTTTCTTT +
Preference number: 4 (lower is better)
Translates to: AGVLVQLSLSGEGPFGHPTITDL*EDEFFF
Trigger: AAAGAAAAACTCATCTTCTCAGAGATCAGTGATGGT...GGGGTGACCAAAGGGGCCCTCTCCGCTGAGGCTCAGCTGGACCAGGACTCCAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR TCA 90 bp CTGGCATCATGGCTGATCAAGGGAGGGACTCAGATATCCAGTAGTCTTCACTTTGCAGGACAGTCCAGTTaGGCATGGCAGCAGGCCTGC +
Preference number: 4 (lower is better)
Translates to: LASWLIKGGTQISSSLHFAGQSS*AWQQAC
Trigger: GCAGGCCTGCTGCCATGCTCAACTGGACTGTCCTGC...AAAGTGAAGACTACTGGATATCTGAGTCCCTCCCTTGATCAGCCATGATGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR TCA 90 bp AAGGGAGGGACTCAGATATCCAGTAGTCTTCACTTTCATCTGCAAAATGGCTCTCCTGTGGTCGGAGGGTaGCAGGGAGCTGGCCGTCCA +
Preference number: 4 (lower is better)
Translates to: KGGTQISSSLHFHLQNGSPVVGG*QGAGRP
Trigger: TGGACGGCCAGCTCCCTGTCACCCTCCGACCACAGG...AGAGCCATTTTGCAGATGAAAGTGAAGACTACTGGATATCTGAGTCCCTCCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR TCA 90 bp TCTGGCGCTAGGTATTGGTTCTTAACTGCTGAGCCATCTCCCCAGCCCACTGGAAGAGCCACGGTGCATTaGCAGTGTACAGGTTCACAC +
Preference number: 4 (lower is better)
Translates to: SGARYWFLTAEPSPQPTGRATVH*QCTGSH
Trigger: GTGTGAACCTGTACACTGTCAATGCACCGTGGCTCT...TCCAGTGGGCTGGGGAGATGGCTCAGCAGTTAAGAACCAATACCTAGCGCCAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR GCA 90 bp GGGAACCTGAGGTCAGATCAGTCTGTCGTTCACCTGGTCCTCAAGGCTTCTTCTCAGGACCAGGAGGCCTaGGATGTATGTGAAAGCAGC +
Preference number: 4 (lower is better)
Translates to: GNLRSDQSVVHLVLKASSQDQEA*DVCESS
Trigger: GCTGCTTTCACATACATCGCAGGCCTCCTGGTCCTG...AGAAGAAGCCTTGAGGACCAGGTGAACGACAGACTGATCTGACCTCAGGTTCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR GCA 90 bp CCTGAGGTCAGATCAGTCTGTCGTTCACCTGGTCCTCAAGGCTTCTTCTGCCCCTTGGATCCAGATGTTTaGTGGAAGCCAGGAGCCATC +
Preference number: 4 (lower is better)
Translates to: PEVRSVCRSPGPQGFFCPLDPDV*WKPGAI
Trigger: GATGGCTCCTGGCTTCCAGCAAACATCTGGATCCAA...GGGGCAGAAGAAGCCTTGAGGACCAGGTGAACGACAGACTGATCTGACCTCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR CCA 90 bp AGAGGACCCAAGTTTAGTTCCCAGCACCTCTATCAAGTGGCTCACCACTGCTTGCATCACTGTGTGTTCTaGAGCCAGCATGGGAGCCCC +
Preference number: 4 (lower is better)
Translates to: RGPKFSSQHLYQVAHHCLHHCVF*SQHGSP
Trigger: GGGGCTCCCATGCTGGCTCCAGAACACACAGTGATG...CAAGCAGTGGTGAGCCACTTGATAGAGGTGCTGGGAACTAAACTTGGGTCCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
3UTR CAA 72 bp CACTCATGCAAGAGAGACTGGAACAGACAAAGGAGCTaGGAGCACATAAGTAGGCTGAGGAGCCAGCTCCCG +
Preference number: 4 (lower is better)
Translates to: HSCKRDWNRQRS*EHISRLRSQLP
Trigger: CGGGAGCTGGCTCCTCAGCCTACTTATGTGCTCCAAGCTCCTTTGTCTGTTCCAGTCTCTCTTGCATGAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR GCA 90 bp CTGGCATCATGGCTGATCAAGGGAGGGACTCAGATATCCAGTAGTCTTCACTTTGACGATCCAGGAGAGTaGAGTGATGGCCACCAGGGC +
Preference number: 4 (lower is better)
Translates to: LASWLIKGGTQISSSLHFDDPGE*SDGHQG
Trigger: GCCCTGGTGGCCATCACTGCACTCTCCTGGATCGTC...AAAGTGAAGACTACTGGATATCTGAGTCCCTCCCTTGATCAGCCATGATGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR GCA 90 bp CCTTCCTCTCTTCTAGGTTCTACCTTGGGTACAAGTTGGGCAGACAGATCTTCAAGCCCATACAGCCTCTaGTCCAGCGCCTTCCGGAAG +
Preference number: 4 (lower is better)
Translates to: PSSLLGSTLGTSWADRSSSPYSL*SSAFRK
Trigger: CTTCCGGAAGGCGCTGGAGCAGAGGCTGTATGGGCT...TGAAGATCTGTCTGCCCAACTTGTACCCAAGGTAGAACCTAGAAGAGAGGAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR CCA 90 bp AAGGGAGGGACTCAGATATCCAGTAGTCTTCACTTTCATCTGCAAAATGGCTCTCCGAGGTCACCAGGATaGGCACGGACCAGTCGCTCC +
Preference number: 4 (lower is better)
Translates to: KGGTQISSSLHFHLQNGSPRSPG*ARTSRS
Trigger: GGAGCGACTGGTCCGTGCCCATCCTGGTGACCTCGG...AGAGCCATTTTGCAGATGAAAGTGAAGACTACTGGATATCTGAGTCCCTCCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR CCA 90 bp AGAGACAACACACATCAAGATGGCAGCTTTAATTGTCTTTGCCCTTGGGTTCCTAGGGTGACAGGGAGCTaGCCGTCCAGAAGGGGTCGG +
Preference number: 4 (lower is better)
Translates to: RDNTHQDGSFNCLCPWVPRVTGS*PSRRGR
Trigger: CCGACCCCTTCTGGACGGCCAGCTCCCTGTCACCCT...AGGAACCCAAGGGCAAAGACAATTAAAGCTGCCATCTTGATGTGTGTTGTCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR CCA 90 bp CTGGCATCATGGCTGATCAAGGGAGGGACTCAGATATCCAGTAGTCTTCACTTTCACATGACCTGGTGCTaGGGGAAGCCTGAACGCAGC +
Preference number: 4 (lower is better)
Translates to: LASWLIKGGTQISSSLHFHMTWC*GKPERS
Trigger: GCTGCGTTCAGGCTTCCCCCAGCACCAGGTCATGTG...AAAGTGAAGACTACTGGATATCTGAGTCCCTCCCTTGATCAGCCATGATGCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR TCA 90 bp CCTTCCTCTCTTCTAGGTTCTACCTTGGGTACAAGTTGGGCAGACAGATCTTCACAGATGGACTGGTTCTaGACCTCCCTGTGGTCGGAG +
Preference number: 4 (lower is better)
Translates to: PSSLLGSTLGTSWADRSSQMDWF*TSLWSE
Trigger: CTCCGACCACAGGGAGGTTCAGAACCAGTCCATCTG...TGAAGATCTGTCTGCCCAACTTGTACCCAAGGTAGAACCTAGAAGAGAGGAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR GCA 90 bp TCCAGCTGCTTCTCAGGGACAGAGAGGTCAGTGGTAGAAGGGAGCTGGTTGGGACATAGGTGTCGTAACTaGTGTCTGAACATACGGAGA +
Preference number: 4 (lower is better)
Translates to: SSCFSGTERSVVEGSWLGHRCRN*CLNIRR
Trigger: TCTCCGTATGTTCAGACAGCAGTTACGACACCTATG...TCCCAACCAGCTCCCTTCTACCACTGACCTCTCTGTCCCTGAGAAGCAGCTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR CCA 90 bp CCTTCCTCTCTTCTAGGTTCTACCTTGGGTACAAGTTGGGCAGACAGATCTTCACTGCCAGGCTGCAGATaGACTGGTTCTGAACCTCCC +
Preference number: 4 (lower is better)
Translates to: PSSLLGSTLGTSWADRSSLPGCR*TGSEPP
Trigger: GGGAGGTTCAGAACCAGTCCATCTGCAGCCTGGCAG...TGAAGATCTGTCTGCCCAACTTGTACCCAAGGTAGAACCTAGAAGAGAGGAAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR TCA 90 bp AGAGACAACACACATCAAGATGGCAGCTTTAATTGTCTTTGCCCTTGGGTTCCTGATGCCTGTGAGGCATaGGAGGCACAGTTGGGGCTC +
Preference number: 4 (lower is better)
Translates to: RDNTHQDGSFNCLCPWVPDACEA*EAQLGL
Trigger: GAGCCCCAACTGTGCCTCTCATGCCTCACAGGCATC...AGGAACCCAAGGGCAAAGACAATTAAAGCTGCCATCTTGATGTGTGTTGTCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR TCA 90 bp CTGGCATCATGGCTGATCAAGGGAGGGACTCAGATATCCAGTAGTCTTCACTTTGGATCAGGTAGAAGGTaGAGACCACGGCGAAGAAGG +
Preference number: 4 (lower is better)
Translates to: LASWLIKGGTQISSSLHFGSGRR*RPRRRR
Trigger: CCTTCTTCGCCGTGGTCTTCACCTTCTACCTGATCC...AAAGTGAAGACTACTGGATATCTGAGTCCCTCCCTTGATCAGCCATGATGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR TCA 90 bp CTGGCATCATGGCTGATCAAGGGAGGGACTCAGATATCCAGTAGTCTTCACTTTAGGGAGAGGAGATGGTaGGAGGGATCAGGTAGAAGG +
Preference number: 4 (lower is better)
Translates to: LASWLIKGGTQISSSLHFRERRW*EGSGRR
Trigger: CCTTCTACCTGATCCCTCTCACCATCTCCTCTCCCT...AAAGTGAAGACTACTGGATATCTGAGTCCCTCCCTTGATCAGCCATGATGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR TCA 90 bp CCTTCCTCTCTTCTAGGTTCTACCTTGGGTACAAGTTGGGCAGACAGATCTTCAAGGGAGAGGAGATGGTaGGAGGGATCAGGTAGAAGG +
Preference number: 4 (lower is better)
Translates to: PSSLLGSTLGTSWADRSSRERRW*EGSGRR
Trigger: CCTTCTACCTGATCCCTCTCACCATCTCCTCTCCCT...TGAAGATCTGTCTGCCCAACTTGTACCCAAGGTAGAACCTAGAAGAGAGGAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR GCA 90 bp CTGGCATCATGGCTGATCAAGGGAGGGACTCAGATATCCAGTAGTCTTCACTTTGCAGCTCTGCCAGGCTaGAGATGGACTGGTTCTGAA +
Preference number: 4 (lower is better)
Translates to: LASWLIKGGTQISSSLHFAALPG*RWTGSE
Trigger: TTCAGAACCAGTCCATCTGCAGCCTGGCAGAGCTGC...AAAGTGAAGACTACTGGATATCTGAGTCCCTCCCTTGATCAGCCATGATGCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR GCA 90 bp GGGAACCTGAGGTCAGATCAGTCTGTCGTTCACCTGGTCCTCAAGGCTTCTTCTCGTACCAAAGGCCTCTaGCTGTTAAATAGCCACATG +
Preference number: 4 (lower is better)
Translates to: GNLRSDQSVVHLVLKASSRTKGL*LLNSHM
Trigger: CATGTGGCTATTTAACAGGCAGAGGCCTTTGGTACG...AGAAGAAGCCTTGAGGACCAGGTGAACGACAGACTGATCTGACCTCAGGTTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR CCA 90 bp GGGAACCTGAGGTCAGATCAGTCTGTCGTTCACCTGGTCCTCAAGGCTTCTTCTCAGCATGATCTGCTCTaGGTTGTAACTCCGTATACC +
Preference number: 4 (lower is better)
Translates to: GNLRSDQSVVHLVLKASSQHDLL*VVTPYT
Trigger: GGTATACGGAGTTACAACCCAGAGCAGATCATGCTG...AGAAGAAGCCTTGAGGACCAGGTGAACGACAGACTGATCTGACCTCAGGTTCCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR TCA 90 bp AAGGGAGGGACTCAGATATCCAGTAGTCTTCACTTTCATCTGCAAAATGGCTCTACTCGTCTGGGGGCATaGTCCAGAGTGGAGAAGGCA +
Preference number: 4 (lower is better)
Translates to: KGGTQISSSLHFHLQNGSTRLGA*SRVEKA
Trigger: TGCCTTCTCCACTCTGGATCATGCCCCCAGACGAGT...AGAGCCATTTTGCAGATGAAAGTGAAGACTACTGGATATCTGAGTCCCTCCCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR GCA 90 bp CCTTCCTCTCTTCTAGGTTCTACCTTGGGTACAAGTTGGGCAGACAGATCTTCAATGGTGATGTCAGCTTaGAGCCCATACAGCCTCTGC +
Preference number: 4 (lower is better)
Translates to: PSSLLGSTLGTSWADRSSMVMSA*SPYSLC
Trigger: GCAGAGGCTGTATGGGCTGCAAGCTGACATCACCAT...TGAAGATCTGTCTGCCCAACTTGTACCCAAGGTAGAACCTAGAAGAGAGGAAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR GCA 90 bp CTGGGTCCCCAAACTGCCACTGACAATTCAGAGACAACACACATCAAGATGGCATTGGATCCAGATGTTTaGTGGAAGCCAGGAGCCATC +
Preference number: 4 (lower is better)
Translates to: LGPQTATDNSETTHIKMALDPDV*WKPGAI
Trigger: GATGGCTCCTGGCTTCCAGCAAACATCTGGATCCAA...TGCCATCTTGATGTGTGTTGTCTCTGAATTGTCAGTGGCAGTTTGGGGACCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR CCA 90 bp ATTCTAGAGGACCCAAGTTTAGTTCCCAGCACCTCTATCAAGTGGCTCACCACTAATAGCCACATGACCTaGTGCTGGGGGAAGCCTGAA +
Preference number: 4 (lower is better)
Translates to: ILEDPSLVPSTSIKWLTTNSHMT*CWGKPE
Trigger: TTCAGGCTTCCCCCAGCACCAGGTCATGTGGCTATT...AGTGGTGAGCCACTTGATAGAGGTGCTGGGAACTAAACTTGGGTCCTCTAGAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR TCA 90 bp CCTGAGGTCAGATCAGTCTGTCGTTCACCTGGTCCTCAAGGCTTCTTCTGCCCCACCATCACTGATCTCTaGGAAGATGAGTTTTTCTTT +
Preference number: 4 (lower is better)
Translates to: PEVRSVCRSPGPQGFFCPTITDL*EDEFFF
Trigger: AAAGAAAAACTCATCTTCTCAGAGATCAGTGATGGT...GGGGCAGAAGAAGCCTTGAGGACCAGGTGAACGACAGACTGATCTGACCTCAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR GCA 90 bp CTGGCATCATGGCTGATCAAGGGAGGGACTCAGATATCCAGTAGTCTTCACTTTGGAGAAGAGCCACGGTaGATTGACAGTGTACAGGTT +
Preference number: 4 (lower is better)
Translates to: LASWLIKGGTQISSSLHFGEEPR*IDSVQV
Trigger: AACCTGTACACTGTCAATGCACCGTGGCTCTTCTCC...AAAGTGAAGACTACTGGATATCTGAGTCCCTCCCTTGATCAGCCATGATGCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR CCA 90 bp CTGGGTCCCCAAACTGCCACTGACAATTCAGAGACAACACACATCAAGATGGCACAGCATGATCTGCTCTaGGTTGTAACTCCGTATACC +
Preference number: 4 (lower is better)
Translates to: LGPQTATDNSETTHIKMAQHDLL*VVTPYT
Trigger: GGTATACGGAGTTACAACCCAGAGCAGATCATGCTG...TGCCATCTTGATGTGTGTTGTCTCTGAATTGTCAGTGGCAGTTTGGGGACCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR TCA 90 bp TTAAGCATAAGAGTTAAGGGTGTGGATGTAGGCTTCTCAAAGAGTAGCCCTGGCGTCGTAACTGCTGTCTaGACATACGGAGAGCTCATC +
Preference number: 4 (lower is better)
Translates to: LSIRVKGVDVGFSKSSPGVVTAV*TYGELI
Trigger: GATGAGCTCTCCGTATGTTCAGACAGCAGTTACGAC...GCCAGGGCTACTCTTTGAGAAGCCTACATCCACACCCTTAACTCTTATGCTTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR GCA 90 bp CTGGCATCATGGCTGATCAAGGGAGGGACTCAGATATCCAGTAGTCTTCACTTTCGTACCAAAGGCCTCTaGCTGTTAAATAGCCACATG +
Preference number: 4 (lower is better)
Translates to: LASWLIKGGTQISSSLHFRTKGL*LLNSHM
Trigger: CATGTGGCTATTTAACAGGCAGAGGCCTTTGGTACG...AAAGTGAAGACTACTGGATATCTGAGTCCCTCCCTTGATCAGCCATGATGCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR GCA 90 bp CCTTCCTCTCTTCTAGGTTCTACCTTGGGTACAAGTTGGGCAGACAGATCTTCACATAGGTGTCGTAACTaGTGTCTGAACATACGGAGA +
Preference number: 4 (lower is better)
Translates to: PSSLLGSTLGTSWADRSSHRCRN*CLNIRR
Trigger: TCTCCGTATGTTCAGACAGCAGTTACGACACCTATG...TGAAGATCTGTCTGCCCAACTTGTACCCAAGGTAGAACCTAGAAGAGAGGAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS TCA 90 bp GGAAGCTGCCACGGTAGGGGTGATCACGGGGCGGGTCCCGAAGGTTaGGCAGCAGCGAGGCATTGCCCTTGGCCAGCTCCAGCAGCTCTG +
Preference number: 5 (lower is better)
Translates to: GSCHGRGDHGAGPEG*AAARHCPWPAPAAL
Trigger: CAGAGCTGCTGGAGCTGGCCAAGGGCAATGCCTCGCTGCTGCTCAACCTTCGGGACCCGCCCCGTGATCACCCCTACCGTGGCAGCTTCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR CAA 90 bp GCTGGAGTCCTGGTCCAGCTGAGCCTCAGCGGAGAGGGCCCCTTTGGTCACCCCGTCATCGTGCGAGCGTaGGTAGCGCTTCCAGCGGCA +
Preference number: 5 (lower is better)
Translates to: AGVLVQLSLSGEGPFGHPVIVRA*VALPAA
Trigger: TGCCGCTGGAAGCGCTACCAACGCTCGCACGATGAC...GGGGTGACCAAAGGGGCCCTCTCCGCTGAGGCTCAGCTGGACCAGGACTCCAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS GCA 90 bp GGAAATCAGCAGCACCTCCCACTCATCCTCCCAGAGCTGGGCCACTaGAGACATGGCCACCACCGTGGAGGCCAGGATGACCACCAGCCC +
Preference number: 5 (lower is better)
Translates to: GNQQHLPLILPELGH*RHGHHRGGQDDHQP
Trigger: GGGCTGGTGGTCATCCTGGCCTCCACGGTGGTGGCCATGTCTGCAGTGGCCCAGCTCTGGGAGGATGAGTGGGAGGTGCTGCTGATTTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS CCA 90 bp CCCTGCAGGGAAATCAGCAGCACCTCCCACTCATCCTCCCAGAGCTaGGCCACTGCAGACATGGCCACCACCGTGGAGGCCAGGATGACC +
Preference number: 5 (lower is better)
Translates to: PCREISSTSHSSSQS*ATADMATTVEARMT
Trigger: GGTCATCCTGGCCTCCACGGTGGTGGCCATGTCTGCAGTGGCCCAGCTCTGGGAGGATGAGTGGGAGGTGCTGCTGATTTCCCTGCAGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS GCA 90 bp CAGAAGGGGTCGGTCTTGAGGAACCACTGGCCGGCATTGAGCCTCTaGAGGACAGTCCAGTTGAGCATGGCAGCAGGCCTGCGGGCAAGC +
Preference number: 5 (lower is better)
Translates to: QKGSVLRNHWPALSL*RTVQLSMAAGLRAS
Trigger: GCTTGCCCGCAGGCCTGCTGCCATGCTCAACTGGACTGTCCTGCAGAGGCTCAATGCCGGCCAGTGGTTCCTCAAGACCGACCCCTTCTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS CCA 90 bp GTCCCGGCTGGTCCGGCGTACAGCGGCGCTCAGCATGATCTGCTCTaGGTTGTAACTCCGTATACCACCCAGGCGCCACTTCTGGAGCAC +
Preference number: 5 (lower is better)
Translates to: VPAGPAYSGAQHDLL*VVTPYTTQAPLLEH
Trigger: GTGCTCCAGAAGTGGCGCCTGGGTGGTATACGGAGTTACAACCCAGAGCAGATCATGCTGAGCGCCGCTGTACGCCGGACCAGCCGGGAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS TCA 90 bp GCTCTGCACGGGCAAACTGTCCAGCGACGATCCAGGAGAGTGCAGTaGTGGCCACCAGGGCCCCTATATGCAGGAATGGTGCCGTGCCCT +
Preference number: 5 (lower is better)
Translates to: ALHGQTVQRRSRRVQ*WPPGPLYAGMVPCP
Trigger: AGGGCACGGCACCATTCCTGCATATAGGGGCCCTGGTGGCCATCACTGCACTCTCCTGGATCGTCGCTGGACAGTTTGCCCGTGCAGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS GCA 90 bp GGACCGCTCTGCACGGGCAAACTGTCCAGCGACGATCCAGGAGAGTaGAGTGATGGCCACCAGGGCCCCTATATGCAGGAATGGTGCCGT +
Preference number: 5 (lower is better)
Translates to: GPLCTGKLSSDDPGE*SDGHQGPYMQEWCR
Trigger: ACGGCACCATTCCTGCATATAGGGGCCCTGGTGGCCATCACTGCACTCTCCTGGATCGTCGCTGGACAGTTTGCCCGTGCAGAGCGGTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS GCA 90 bp GTTGAGCAGCAGCGAGGCATTGCCCTTGGCCAGCTCCAGCAGCTCTaGCAGGCTGCAGATGGACTGGTTCTGAACCTCCCTGTGGTCGGA +
Preference number: 5 (lower is better)
Translates to: VEQQRGIALGQLQQL*QAADGLVLNLPVVG
Trigger: TCCGACCACAGGGAGGTTCAGAACCAGTCCATCTGCAGCCTGGCAGAGCTGCTGGAGCTGGCCAAGGGCAATGCCTCGCTGCTGCTCAAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS CCA 90 bp GACAGGGAGCTGGCCGTCCAGAAGGGGTCGGTCTTGAGGAACCACTaGCCGGCATTGAGCCTCTGCAGGACAGTCCAGTTGAGCATGGCA +
Preference number: 5 (lower is better)
Translates to: DRELAVQKGSVLRNH*PALSLCRTVQLSMA
Trigger: TGCCATGCTCAACTGGACTGTCCTGCAGAGGCTCAATGCCGGCCAGTGGTTCCTCAAGACCGACCCCTTCTGGACGGCCAGCTCCCTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS CCA 90 bp GTCCCGGCTGGTCCGGCGTACAGCGGCGCTCAGCATGATCTGCTCTaGGTTGTAACTCCGTATACCACCCAGGCGCCACCTGATCAAGTG +
Preference number: 5 (lower is better)
Translates to: VPAGPAYSGAQHDLL*VVTPYTTQAPPDQV
Trigger: CACTTGATCAGGTGGCGCCTGGGTGGTATACGGAGTTACAACCCAGAGCAGATCATGCTGAGCGCCGCTGTACGCCGGACCAGCCGGGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213887.2
CDS TCA 90 bp CGTGCGAGCGTTGGTAGCGCTTCCAGCGGCAGCCATAGATGCCTGTaGGGCATGAGAGGCACAGTTGGGGCTCGTAGTATTGCAGGGGCT +
Preference number: 5 (lower is better)
Translates to: RASVGSASSGSHRCL*GMRGTVGARSIAGA
Trigger: AGCCCCTGCAATACTACGAGCCCCAACTGTGCCTCTCATGCCTCACAGGCATCTATGGCTGCCGCTGGAAGCGCTACCAACGCTCGCACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037528.10
ENSMUST00000208800.2
ENSMUST00000213887.2
CDS GCA 90 bp GGAGAGTGCAGTGATGGCCACCAGGGCCCCTATATGCAGGAATGGTaGCGTGCCCTGCAGGGAAATCAGCAGCACCTCCCACTCATCCTC +
Preference number: 5 (lower is better)
Translates to: GECSDGHQGPYMQEW*RALQGNQQHLPLIL
Trigger: GAGGATGAGTGGGAGGTGCTGCTGATTTCCCTGCAGGGCACGGCACCATTCCTGCATATAGGGGCCCTGGTGGCCATCACTGCACTCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS GCA 90 bp CAGTTGAGCATGGCAGCAGGCCTGCGGGCAAGCTCCGGGAACAGGTaGTCCACATTGGTGGTCCGCCTCAGGGTAGTGTCATGCATGAGA +
Preference number: 5 (lower is better)
Translates to: QLSMAAGLRASSGNR*STLVVRLRVVSCMR
Trigger: TCTCATGCATGACACTACCCTGAGGCGGACCACCAATGTGGAGCACCTGTTCCCGGAGCTTGCCCGCAGGCCTGCTGCCATGCTCAACTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS CCA 90 bp CCAGGAGAGTGCAGTGATGGCCACCAGGGCCCCTATATGCAGGAATaGTGCCGTGCCCTGCAGGGAAATCAGCAGCACCTCCCACTCATC +
Preference number: 5 (lower is better)
Translates to: PGECSDGHQGPYMQE*CRALQGNQQHLPLI
Trigger: GATGAGTGGGAGGTGCTGCTGATTTCCCTGCAGGGCACGGCACCATTCCTGCATATAGGGGCCCTGGTGGCCATCACTGCACTCTCCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR CAA 90 bp GGCTGGAGTCCTGGTCCAGCTGAGCCTCAGCGGAGAGGGCCCCTTTGGTCACCCAAGAGCCACGGTGCATaGACAGTGTACAGGTTCACA +
Preference number: 5 (lower is better)
Translates to: GWSPGPAEPQRRGPLWSPKSHGA*TVYRFT
Trigger: TGTGAACCTGTACACTGTCAATGCACCGTGGCTCTT...GGGTGACCAAAGGGGCCCTCTCCGCTGAGGCTCAGCTGGACCAGGACTCCAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS TCA 90 bp GCGTTGGTAGCGCTTCCAGCGGCAGCCATAGATGCCTGTGAGGCATaGGAGGCACAGTTGGGGCTCGTAGTATTGCAGGGGCTGGTGTCT +
Preference number: 5 (lower is better)
Translates to: ALVALPAAAIDACEA*EAQLGLVVLQGLVS
Trigger: AGACACCAGCCCCTGCAATACTACGAGCCCCAACTGTGCCTCTCATGCCTCACAGGCATCTATGGCTGCCGCTGGAAGCGCTACCAACGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037528.10
ENSMUST00000208800.2
ENSMUST00000213887.2
CDS-3UTR CAA 90 bp AGACAAAGGAGCTTGGAGCACATAAGTAGGCTGAGGAGCCAGCTCCCGGGCCCTTGCTCTGTGACGGTCTaGGCACGGCTGCCAGCATTT +
Preference number: 5 (lower is better)
Translates to: RQRSLEHISRLRSQLPGPCSVTV*ARLPAF
Trigger: AAATGCTGGCAGCCGTGCCAAGACCGTCACAGAGCA...AGGGCCCGGGAGCTGGCTCCTCAGCCTACTTATGTGCTCCAAGCTCCTTTGTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS GCA 90 bp TGCATGAGAAAGGGCACACCATCCAGGCTGATGGTGATGTCAGCTTaGAGCCCATACAGCCTCTGCTCCAGCGCCTTCCGGAAGGACATC +
Preference number: 5 (lower is better)
Translates to: CMRKGTPSRLMVMSA*SPYSLCSSAFRKDI
Trigger: GATGTCCTTCCGGAAGGCGCTGGAGCAGAGGCTGTATGGGCTGCAAGCTGACATCACCATCAGCCTGGATGGTGTGCCCTTTCTCATGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR CAA 90 bp TCCAGCTGCTTCTCAGGGACAGAGAGGTCAGTGGTAGAAGGGAGCTGGTTGGGATTGGGGCTCGTAGTATaGCAGGGGCTGGTGTCTCAC +
Preference number: 5 (lower is better)
Translates to: SSCFSGTERSVVEGSWLGLGLVV*QGLVSH
Trigger: GTGAGACACCAGCCCCTGCAATACTACGAGCCCCAA...TCCCAACCAGCTCCCTTCTACCACTGACCTCTCTGTCCCTGAGAAGCAGCTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR CAA 90 bp TCTGGCGCTAGGTATTGGTTCTTAACTGCTGAGCCATCTCCCCAGCCCACTGGAAACAGGTGCTCCACATaGGTGGTCCGCCTCAGGGTA +
Preference number: 5 (lower is better)
Translates to: SGARYWFLTAEPSPQPTGNRCST*VVRLRV
Trigger: TACCCTGAGGCGGACCACCAATGTGGAGCACCTGTT...TCCAGTGGGCTGGGGAGATGGCTCAGCAGTTAAGAACCAATACCTAGCGCCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR CAA 90 bp ACCCCAGCATGCTGGGTCCCCAAACTGCCACTGACAATTCAGAGACAACACACAAACCACTGGCCGGCATaGAGCCTCTGCAGGACAGTC +
Preference number: 5 (lower is better)
Translates to: TPACWVPKLPLTIQRQHTNHWPA*SLCRTV
Trigger: GACTGTCCTGCAGAGGCTCAATGCCGGCCAGTGGTT...TGTGTGTTGTCTCTGAATTGTCAGTGGCAGTTTGGGGACCCAGCATGCTGGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS TCA 90 bp CGGACCAGTCGCTCCAGTAGCCCATGCGGTTGTAGAGGTACCAGTTaGACTCATCGTAGTCGTTGTGGACACCCCACCAAAAGTAGAGCC +
Preference number: 5 (lower is better)
Translates to: RTSRSSSPCGCRGTS*THRSRCGHPTKSRA
Trigger: GGCTCTACTTTTGGTGGGGTGTCCACAACGACTACGATGAGTTCAACTGGTACCTCTACAACCGCATGGGCTACTGGAGCGACTGGTCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000037528.10
ENSMUST00000208800.2
ENSMUST00000213887.2
CDS-3UTR CAA 90 bp TGGCCGCTGCTGTGGGAACCTGAGGTCAGATCAGTCTGTCGTTCACCTGGTCCTTTTGGATCCAGATGTTaGCTGGAAGCCAGGAGCCAT +
Preference number: 5 (lower is better)
Translates to: WPLLWEPEVRSVCRSPGPFGSRC*LEARSH
Trigger: ATGGCTCCTGGCTTCCAGCAAACATCTGGATCCAAA...AGGACCAGGTGAACGACAGACTGATCTGACCTCAGGTTCCCACAGCAGCGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR CAA 90 bp AGACAAAGGAGCTTGGAGCACATAAGTAGGCTGAGGAGCCAGCTCCCGGGCCCTAAGAGCCACGGTGCATaGACAGTGTACAGGTTCACA +
Preference number: 5 (lower is better)
Translates to: RQRSLEHISRLRSQLPGPKSHGA*TVYRFT
Trigger: TGTGAACCTGTACACTGTCAATGCACCGTGGCTCTT...AGGGCCCGGGAGCTGGCTCCTCAGCCTACTTATGTGCTCCAAGCTCCTTTGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS GCA 90 bp GATGTTTGCTGGAAGCCAGGAGCCATCTTCCGTACCAAAGGCCTCTaGCTGTTAAATAGCCACATGACCTGGTGCTGGGGGAAGCCTGAA +
Preference number: 5 (lower is better)
Translates to: DVCWKPGAIFRTKGL*LLNSHMTWCWGKPE
Trigger: TTCAGGCTTCCCCCAGCACCAGGTCATGTGGCTATTTAACAGGCAGAGGCCTTTGGTACGGAAGATGGCTCCTGGCTTCCAGCAAACATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR CAA 90 bp ATTCTAGAGGACCCAAGTTTAGTTCCCAGCACCTCTATCAAGTGGCTCACCACTGTCATCGTGCGAGCGTaGGTAGCGCTTCCAGCGGCA +
Preference number: 5 (lower is better)
Translates to: ILEDPSLVPSTSIKWLTTVIVRA*VALPAA
Trigger: TGCCGCTGGAAGCGCTACCAACGCTCGCACGATGAC...AGTGGTGAGCCACTTGATAGAGGTGCTGGGAACTAAACTTGGGTCCTCTAGAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR CAA 90 bp CCTTCCTCTCTTCTAGGTTCTACCTTGGGTACAAGTTGGGCAGACAGATCTTCAAACCACTGGCCGGCATaGAGCCTCTGCAGGACAGTC +
Preference number: 5 (lower is better)
Translates to: PSSLLGSTLGTSWADRSSNHWPA*SLCRTV
Trigger: GACTGTCCTGCAGAGGCTCAATGCCGGCCAGTGGTT...TGAAGATCTGTCTGCCCAACTTGTACCCAAGGTAGAACCTAGAAGAGAGGAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS CCA 90 bp CCTTTCCGTAAGTTAGCGATGGCTTCTTTGGATCCAGATGTTTGCTaGAAGCCAGGAGCCATCTTCCGTACCAAAGGCCTCTGCCTGTTA +
Preference number: 5 (lower is better)
Translates to: PFRKLAMASLDPDVC*KPGAIFRTKGLCLL
Trigger: TAACAGGCAGAGGCCTTTGGTACGGAAGATGGCTCCTGGCTTCCAGCAAACATCTGGATCCAAAGAAGCCATCGCTAACTTACGGAAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS-3UTR CAA 90 bp TTAAGCATAAGAGTTAAGGGTGTGGATGTAGGCTTCTCAAAGAGTAGCCCTGGCTTGGGGCTCGTAGTATaGCAGGGGCTGGTGTCTCAC +
Preference number: 5 (lower is better)
Translates to: LSIRVKGVDVGFSKSSPGLGLVV*QGLVSH
Trigger: GTGAGACACCAGCCCCTGCAATACTACGAGCCCCAA...GCCAGGGCTACTCTTTGAGAAGCCTACATCCACACCCTTAACTCTTATGCTTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR CAA 90 bp TTAAGCATAAGAGTTAAGGGTGTGGATGTAGGCTTCTCAAAGAGTAGCCCTGGCTGCTCTGTGACGGTCTaGGCACGGCTGCCAGCATTT +
Preference number: 5 (lower is better)
Translates to: LSIRVKGVDVGFSKSSPGCSVTV*ARLPAF
Trigger: AAATGCTGGCAGCCGTGCCAAGACCGTCACAGAGCA...GCCAGGGCTACTCTTTGAGAAGCCTACATCCACACCCTTAACTCTTATGCTTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS-3UTR CAA 90 bp CCTTCCTCTCTTCTAGGTTCTACCTTGGGTACAAGTTGGGCAGACAGATCTTCATTTGGATCCAGATGTTaGCTGGAAGCCAGGAGCCAT +
Preference number: 5 (lower is better)
Translates to: PSSLLGSTLGTSWADRSSFGSRC*LEARSH
Trigger: ATGGCTCCTGGCTTCCAGCAAACATCTGGATCCAAA...TGAAGATCTGTCTGCCCAACTTGTACCCAAGGTAGAACCTAGAAGAGAGGAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS TCA 72 bp CACGGTAGGGGTGATCACGGGGCGGGTCCCGAAGGTTaGGCAGCAGCGAGGCATTGCCCTTGGCCAGCTCCA +
Preference number: 6 (lower is better)
Translates to: HGRGDHGAGPEG*AAARHCPWPAP
Trigger: TGGAGCTGGCCAAGGGCAATGCCTCGCTGCTGCTCAACCTTCGGGACCCGCCCCGTGATCACCCCTACCGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS CAA 72 bp CACTGGCCGGCATTGAGCCTCTGCAGGACAGTCCAGTaGAGCATGGCAGCAGGCCTGCGGGCAAGCTCCGGG +
Preference number: 6 (lower is better)
Translates to: HWPALSLCRTVQ*SMAAGLRASSG
Trigger: CCCGGAGCTTGCCCGCAGGCCTGCTGCCATGCTCAACTGGACTGTCCTGCAGAGGCTCAATGCCGGCCAGTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS CAA 72 bp CAGGCGCTCCCACGGCGTGGTGTCATCGTGCGAGCGTaGGTAGCGCTTCCAGCGGCAGCCATAGATGCCTGT +
Preference number: 6 (lower is better)
Translates to: QALPRRGVIVRA*VALPAAAIDAC
Trigger: ACAGGCATCTATGGCTGCCGCTGGAAGCGCTACCAACGCTCGCACGATGACACCACGCCGTGGGAGCGCCTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000037528.10
ENSMUST00000208800.2
ENSMUST00000213887.2
CDS GCA 72 bp ATGGCAGCAGGCCTGCGGGCAAGCTCCGGGAACAGGTaGTCCACATTGGTGGTCCGCCTCAGGGTAGTGTCA +
Preference number: 6 (lower is better)
Translates to: MAAGLRASSGNR*STLVVRLRVVS
Trigger: TGACACTACCCTGAGGCGGACCACCAATGTGGAGCACCTGTTCCCGGAGCTTGCCCGCAGGCCTGCTGCCAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS CAA 90 bp TTGAGGAACCACTGGCCGGCATTGAGCCTCTGCAGGACAGTCCAGTaGAGCATGGCAGCAGGCCTGCGGGCAAGCTCCGGGAACAGGTGC +
Preference number: 6 (lower is better)
Translates to: LRNHWPALSLCRTVQ*SMAAGLRASSGNRC
Trigger: GCACCTGTTCCCGGAGCTTGCCCGCAGGCCTGCTGCCATGCTCAACTGGACTGTCCTGCAGAGGCTCAATGCCGGCCAGTGGTTCCTCAA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS CAA 90 bp CTGGCCGTCCAGAAGGGGTCGGTCTTGAGGAACCACTGGCCGGCATaGAGCCTCTGCAGGACAGTCCAGTTGAGCATGGCAGCAGGCCTG +
Preference number: 6 (lower is better)
Translates to: LAVQKGSVLRNHWPA*SLCRTVQLSMAAGL
Trigger: CAGGCCTGCTGCCATGCTCAACTGGACTGTCCTGCAGAGGCTCAATGCCGGCCAGTGGTTCCTCAAGACCGACCCCTTCTGGACGGCCAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS TCA 72 bp CGTCCCGGCTGGTCCGGCGTACAGCGGCGCTCAGCATaGTCTGCTCTGGGTTGTAACTCCGTATACCACCCA +
Preference number: 6 (lower is better)
Translates to: RPGWSGVQRRSA*SALGCNSVYHP
Trigger: TGGGTGGTATACGGAGTTACAACCCAGAGCAGATCATGCTGAGCGCCGCTGTACGCCGGACCAGCCGGGACG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS CCA 72 bp CTGGCCGTCCAGAAGGGGTCGGTCTTGAGGAACCACTaGCCGGCATTGAGCCTCTGCAGGACAGTCCAGTTG +
Preference number: 6 (lower is better)
Translates to: LAVQKGSVLRNH*PALSLCRTVQL
Trigger: CAACTGGACTGTCCTGCAGAGGCTCAATGCCGGCCAGTGGTTCCTCAAGACCGACCCCTTCTGGACGGCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS CCA 72 bp GGTCCGGCGTACAGCGGCGCTCAGCATGATCTGCTCTaGGTTGTAACTCCGTATACCACCCAGGCGCCACCT +
Preference number: 6 (lower is better)
Translates to: GPAYSGAQHDLL*VVTPYTTQAPP
Trigger: AGGTGGCGCCTGGGTGGTATACGGAGTTACAACCCAGAGCAGATCATGCTGAGCGCCGCTGTACGCCGGACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213887.2
CDS CAA 72 bp GGCCTGCGGGCAAGCTCCGGGAACAGGTGCTCCACATaGGTGGTCCGCCTCAGGGTAGTGTCATGCATGAGA +
Preference number: 6 (lower is better)
Translates to: GLRASSGNRCST*VVRLRVVSCMR
Trigger: TCTCATGCATGACACTACCCTGAGGCGGACCACCAATGTGGAGCACCTGTTCCCGGAGCTTGCCCGCAGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS CAA 90 bp ATGGCAGCAGGCCTGCGGGCAAGCTCCGGGAACAGGTGCTCCACATaGGTGGTCCGCCTCAGGGTAGTGTCATGCATGAGAAAGGGCACA +
Preference number: 6 (lower is better)
Translates to: MAAGLRASSGNRCST*VVRLRVVSCMRKGT
Trigger: TGTGCCCTTTCTCATGCATGACACTACCCTGAGGCGGACCACCAATGTGGAGCACCTGTTCCCGGAGCTTGCCCGCAGGCCTGCTGCCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS TCA 72 bp GCGCTTCCAGCGGCAGCCATAGATGCCTGTGAGGCATaGGAGGCACAGTTGGGGCTCGTAGTATTGCAGGGG +
Preference number: 6 (lower is better)
Translates to: ALPAAAIDACEA*EAQLGLVVLQG
Trigger: CCCCTGCAATACTACGAGCCCCAACTGTGCCTCTCATGCCTCACAGGCATCTATGGCTGCCGCTGGAAGCGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037528.10
ENSMUST00000208800.2
ENSMUST00000213887.2
CDS TCA 72 bp AAGGCACCCGAGAAAGGGTATGGGAGTTGTCGGAAGTaGCGGAGGGGACCCCAGCACACCACAGCAGGGAGA +
Preference number: 6 (lower is better)
Translates to: KAPEKGYGSCRK*RRGPQHTTAGR
Trigger: TCTCCCTGCTGTGGTGTGCTGGGGTCCCCTCCGTCACTTCCGACAACTCCCATACCCTTTCTCGGGTGCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS GCA 72 bp AAGGGCACACCATCCAGGCTGATGGTGATGTCAGCTTaGAGCCCATACAGCCTCTGCTCCAGCGCCTTCCGG +
Preference number: 6 (lower is better)
Translates to: KGTPSRLMVMSA*SPYSLCSSAFR
Trigger: CCGGAAGGCGCTGGAGCAGAGGCTGTATGGGCTGCAAGCTGACATCACCATCAGCCTGGATGGTGTGCCCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS GCA 72 bp TCGGTCTTGAGGAACCACTGGCCGGCATTGAGCCTCTaGAGGACAGTCCAGTTGAGCATGGCAGCAGGCCTG +
Preference number: 6 (lower is better)
Translates to: SVLRNHWPALSL*RTVQLSMAAGL
Trigger: CAGGCCTGCTGCCATGCTCAACTGGACTGTCCTGCAGAGGCTCAATGCCGGCCAGTGGTTCCTCAAGACCGA
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS CCA 72 bp TGCAGTGATGGCCACCAGGGCCCCTATATGCAGGAATaGTGCCGTGCCCTGCAGGGAAATCAGCAGCACCTC +
Preference number: 6 (lower is better)
Translates to: CSDGHQGPYMQE*CRALQGNQQHL
Trigger: GAGGTGCTGCTGATTTCCCTGCAGGGCACGGCACCATTCCTGCATATAGGGGCCCTGGTGGCCATCACTGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS CCA 72 bp CAGGTCGGCAGTGACCCACATGAGGCAGTACTCGTCTaGGGGCATGATCCAGAGTGGAGAAGGCACCCGAGA +
Preference number: 6 (lower is better)
Translates to: QVGSDPHEAVLV*GHDPEWRRHPR
Trigger: TCTCGGGTGCCTTCTCCACTCTGGATCATGCCCCCAGACGAGTACTGCCTCATGTGGGTCACTGCCGACCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS CCA 72 bp GGTCCGGCGTACAGCGGCGCTCAGCATGATCTGCTCTaGGTTGTAACTCCGTATACCACCCAGGCGCCACTT +
Preference number: 6 (lower is better)
Translates to: GPAYSGAQHDLL*VVTPYTTQAPL
Trigger: AAGTGGCGCCTGGGTGGTATACGGAGTTACAACCCAGAGCAGATCATGCTGAGCGCCGCTGTACGCCGGACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000037528.10
CDS CAA 72 bp CAGAGTGGAGAAGGCACCCGAGAAAGGGTATGGGAGTaGTCGGAAGTGACGGAGGGGACCCCAGCACACCAC +
Preference number: 6 (lower is better)
Translates to: QSGEGTRERVWE*SEVTEGTPAHH
Trigger: GTGGTGTGCTGGGGTCCCCTCCGTCACTTCCGACAACTCCCATACCCTTTCTCGGGTGCCTTCTCCACTCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS TCA 72 bp GGGCAAACTGTCCAGCGACGATCCAGGAGAGTGCAGTaGTGGCCACCAGGGCCCCTATATGCAGGAATGGTG +
Preference number: 6 (lower is better)
Translates to: GQTVQRRSRRVQ*WPPGPLYAGMV
Trigger: CACCATTCCTGCATATAGGGGCCCTGGTGGCCATCACTGCACTCTCCTGGATCGTCGCTGGACAGTTTGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS GCA 72 bp TGCACGGGCAAACTGTCCAGCGACGATCCAGGAGAGTaGAGTGATGGCCACCAGGGCCCCTATATGCAGGAA +
Preference number: 6 (lower is better)
Translates to: CTGKLSSDDPGE*SDGHQGPYMQE
Trigger: TTCCTGCATATAGGGGCCCTGGTGGCCATCACTGCACTCTCCTGGATCGTCGCTGGACAGTTTGCCCGTGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS CAA 72 bp AAAGGGCACACCATCCAGGCTGATGGTGATGTCAGCTaGCAGCCCATACAGCCTCTGCTCCAGCGCCTTCCG +
Preference number: 6 (lower is better)
Translates to: KGHTIQADGDVS*QPIQPLLQRLP
Trigger: CGGAAGGCGCTGGAGCAGAGGCTGTATGGGCTGCAAGCTGACATCACCATCAGCCTGGATGGTGTGCCCTTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS CAA 72 bp CAGAAGGGGTCGGTCTTGAGGAACCACTGGCCGGCATaGAGCCTCTGCAGGACAGTCCAGTTGAGCATGGCA +
Preference number: 6 (lower is better)
Translates to: QKGSVLRNHWPA*SLCRTVQLSMA
Trigger: TGCCATGCTCAACTGGACTGTCCTGCAGAGGCTCAATGCCGGCCAGTGGTTCCTCAAGACCGACCCCTTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS GCA 72 bp GGTACAAAGAATGGTGAGCTGAGAGGAGGACCGCTCTaGACGGGCAAACTGTCCAGCGACGATCCAGGAGAG +
Preference number: 6 (lower is better)
Translates to: GTKNGELRGGPL*TGKLSSDDPGE
Trigger: CTCTCCTGGATCGTCGCTGGACAGTTTGCCCGTGCAGAGCGGTCCTCCTCTCAGCTCACCATTCTTTGTACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS TCA 72 bp GTTGGTAGCGCTTCCAGCGGCAGCCATAGATGCCTGTaGGGCATGAGAGGCACAGTTGGGGCTCGTAGTATT +
Preference number: 6 (lower is better)
Translates to: VGSASSGSHRCL*GMRGTVGARSI
Trigger: AATACTACGAGCCCCAACTGTGCCTCTCATGCCTCACAGGCATCTATGGCTGCCGCTGGAAGCGCTACCAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037528.10
ENSMUST00000208800.2
ENSMUST00000213887.2
CDS GCA 72 bp CTGATGGTGATGTCAGCTTGCAGCCCATACAGCCTCTaGTCCAGCGCCTTCCGGAAGGACATCACTGTGTGT +
Preference number: 6 (lower is better)
Translates to: LMVMSACSPYSL*SSAFRKDITVC
Trigger: ACACACAGTGATGTCCTTCCGGAAGGCGCTGGAGCAGAGGCTGTATGGGCTGCAAGCTGACATCACCATCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS GCA 72 bp TGGAAGCCAGGAGCCATCTTCCGTACCAAAGGCCTCTaGCTGTTAAATAGCCACATGACCTGGTGCTGGGGG +
Preference number: 6 (lower is better)
Translates to: WKPGAIFRTKGL*LLNSHMTWCWG
Trigger: CCCCCAGCACCAGGTCATGTGGCTATTTAACAGGCAGAGGCCTTTGGTACGGAAGATGGCTCCTGGCTTCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS CCA 72 bp CATGAGGCAGTACTCGTCTGGGGGCATGATCCAGAGTaGAGAAGGCACCCGAGAAAGGGTATGGGAGTTGTC +
Preference number: 6 (lower is better)
Translates to: HEAVLVWGHDPE*RRHPRKGMGVV
Trigger: GACAACTCCCATACCCTTTCTCGGGTGCCTTCTCCACTCTGGATCATGCCCCCAGACGAGTACTGCCTCATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS TCA 72 bp AAGACCACGGCGAAGAAGGTACAAAGAATGGTGAGCTaGGAGGAGGACCGCTCTGCACGGGCAAACTGTCCA +
Preference number: 6 (lower is better)
Translates to: KTTAKKVQRMVS*EEDRSARANCP
Trigger: TGGACAGTTTGCCCGTGCAGAGCGGTCCTCCTCTCAGCTCACCATTCTTTGTACCTTCTTCGCCGTGGTCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS TCA 72 bp CGCTCCAGTAGCCCATGCGGTTGTAGAGGTACCAGTTaGACTCATCGTAGTCGTTGTGGACACCCCACCAAA +
Preference number: 6 (lower is better)
Translates to: RSSSPCGCRGTS*THRSRCGHPTK
Trigger: TTTGGTGGGGTGTCCACAACGACTACGATGAGTTCAACTGGTACCTCTACAACCGCATGGGCTACTGGAGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000037528.10
ENSMUST00000208800.2
ENSMUST00000213887.2
CDS TCA 72 bp CTGGGTTGTAACTCCGTATACCACCCAGGCGCCACCTaGTCAAGTGATAGTTCTGGAGCACGAAGATGCCGA +
Preference number: 6 (lower is better)
Translates to: LGCNSVYHPGAT*SSDSSGARRCR
Trigger: TCGGCATCTTCGTGCTCCAGAACTATCACTTGATCAGGTGGCGCCTGGGTGGTATACGGAGTTACAACCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000213887.2
CDS TCA 72 bp GCTGTTGGCATTAGCATAGGTGTCGTAACTGCTGTCTaGACATACGGAGAGCTCATCGGAGACTTCCACACC +
Preference number: 6 (lower is better)
Translates to: AVGISIGVVTAV*TYGELIGDFHT
Trigger: GGTGTGGAAGTCTCCGATGAGCTCTCCGTATGTTCAGACAGCAGTTACGACACCTATGCTAATGCCAACAGC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS GCA 72 bp CGTAAGTTAGCGATGGCTTCTTTGGATCCAGATGTTTaGTGGAAGCCAGGAGCCATCTTCCGTACCAAAGGC +
Preference number: 6 (lower is better)
Translates to: RKLAMASLDPDV*WKPGAIFRTKG
Trigger: GCCTTTGGTACGGAAGATGGCTCCTGGCTTCCAGCAAACATCTGGATCCAAAGAAGCCATCGCTAACTTACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2
CDS CCA 72 bp AAGTTAGCGATGGCTTCTTTGGATCCAGATGTTTGCTaGAAGCCAGGAGCCATCTTCCGTACCAAAGGCCTC +
Preference number: 6 (lower is better)
Translates to: KLAMASLDPDVC*KPGAIFRTKGL
Trigger: GAGGCCTTTGGTACGGAAGATGGCTCCTGGCTTCCAGCAAACATCTGGATCCAAAGAAGCCATCGCTAACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037528.10
ENSMUST00000213887.2