Pregenerated sensors for GDPD3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030703Ensembl transcript IDs: ENSMUST00000032944.9
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ACTGCTTCCATGGTGTTCTCCAGTCGCTCCCCAGACCCTCCACGGTaGGCAGCCAGGCGGATAGGGAAGACGGGAGCCCGCGGCGTGTGC | + |
|
Preference number: 5 (lower is better) Translates to: TASMVFSSRSPDPPR*AARRIGKTGARGVC Trigger: GCACACGCCGCGGGCTCCCGTCTTCCCTATCCGCCTGGCTGCCCACCGTGGAGGGTCTGGGGAGCGACTGGAGAACACCATGGAAGCAGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032944.9 |
||
| CDS CCA 90 bp | CCAAGAGATCTGCTCGCTGGGCCATGGAATTCTCTACTGCTTCCATaGTGTTCTCCAGTCGCTCCCCAGACCCTCCACGGTGGGCAGCCA | + |
|
Preference number: 5 (lower is better) Translates to: PRDLLAGPWNSLLLP*CSPVAPQTLHGGQP Trigger: TGGCTGCCCACCGTGGAGGGTCTGGGGAGCGACTGGAGAACACCATGGAAGCAGTAGAGAATTCCATGGCCCAGCGAGCAGATCTCTTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032944.9 |
||
| CDS TCA 90 bp | GGGACAGGTTCTTGTCGTGTGACACTACCACCACGCCATCCCGGGTaGGCTGGCAGTCAAATTCCAAGAGATCTGCTCGCTGGGCCATGG | + |
|
Preference number: 5 (lower is better) Translates to: GTGSCRVTLPPRHPG*AGSQIPRDLLAGPW Trigger: CCATGGCCCAGCGAGCAGATCTCTTGGAATTTGACTGCCAGCTCACCCGGGATGGCGTGGTGGTAGTGTCACACGACAAGAACCTGTCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032944.9 |
||
| CDS TCA 90 bp | GCGTGTGCAGCAGATGAGGTCGGCGCAGGAAGAAGATGGAGAGCATaGCGTAACTGCCCAGGGTGGGCAGAACAAAGTACAGGAGAGGGA | + |
|
Preference number: 5 (lower is better) Translates to: ACAADEVGAGRRWRA*RNCPGWAEQSTGEG Trigger: TCCCTCTCCTGTACTTTGTTCTGCCCACCCTGGGCAGTTACGTCATGCTCTCCATCTTCTTCCTGCGCCGACCTCATCTGCTGCACACGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032944.9 |
||
| CDS GCA 90 bp | GTCAAATTCCAAGAGATCTGCTCGCTGGGCCATGGAATTCTCTACTaGTTCCATGGTGTTCTCCAGTCGCTCCCCAGACCCTCCACGGTG | + |
|
Preference number: 5 (lower is better) Translates to: VKFQEICSLGHGILY*FHGVLQSLPRPSTV Trigger: CACCGTGGAGGGTCTGGGGAGCGACTGGAGAACACCATGGAAGCAGTAGAGAATTCCATGGCCCAGCGAGCAGATCTCTTGGAATTTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032944.9 |
||
| CDS GCA 90 bp | CACCACGCCATCCCGGGTGAGCTGGCAGTCAAATTCCAAGAGATCTaGTCGCTGGGCCATGGAATTCTCTACTGCTTCCATGGTGTTCTC | + |
|
Preference number: 5 (lower is better) Translates to: HHAIPGELAVKFQEI*SLGHGILYCFHGVL Trigger: GAGAACACCATGGAAGCAGTAGAGAATTCCATGGCCCAGCGAGCAGATCTCTTGGAATTTGACTGCCAGCTCACCCGGGATGGCGTGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032944.9 |
||
| CDS CCA 90 bp | AGGTTCTTGTCGTGTGACACTACCACCACGCCATCCCGGGTGAGCTaGCAGTCAAATTCCAAGAGATCTGCTCGCTGGGCCATGGAATTC | + |
|
Preference number: 5 (lower is better) Translates to: RFLSCDTTTTPSRVS*QSNSKRSARWAMEF Trigger: GAATTCCATGGCCCAGCGAGCAGATCTCTTGGAATTTGACTGCCAGCTCACCCGGGATGGCGTGGTGGTAGTGTCACACGACAAGAACCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032944.9 |
||
| CDS CCA 90 bp | TTTTGTAATGGTAGCCGACAGTTGGTTCATCCATCCACAGCGAAATaGGAAGTAAGTCCTGTTGATGATGGTGGGCAGGAAACAGAAGAA | + |
|
Preference number: 5 (lower is better) Translates to: FCNGSRQLVHPSTAK*EVSPVDDGGQETEE Trigger: TTCTTCTGTTTCCTGCCCACCATCATCAACAGGACTTACTTCCCATTTCGCTGTGGATGGATGAACCAACTGTCGGCTACCATTACAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032944.9 |
||
| CDS CCA 90 bp | GAGTTCTTCATTTCTTTCTTTGACCTCCAAGCACATGGGAGTCCTTaGAAATTTCTGGAATACATCCTCCAAACTAATCATGTGCCGGTC | + |
|
Preference number: 5 (lower is better) Translates to: EFFISFFDLQAHGSP*KFLEYILQTNHVPV Trigger: GACCGGCACATGATTAGTTTGGAGGATGTATTCCAGAAATTTCCAAGGACTCCCATGTGCTTGGAGGTCAAAGAAAGAAATGAAGAACTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032944.9 |
||
| CDS CCA 72 bp | ATGGTGTTCTCCAGTCGCTCCCCAGACCCTCCACGGTaGGCAGCCAGGCGGATAGGGAAGACGGGAGCCCGC | + |
|
Preference number: 6 (lower is better) Translates to: MVFSSRSPDPPR*AARRIGKTGAR Trigger: GCGGGCTCCCGTCTTCCCTATCCGCCTGGCTGCCCACCGTGGAGGGTCTGGGGAGCGACTGGAGAACACCAT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032944.9 |
||
| CDS GCA 72 bp | CAAGAGATCTGCTCGCTGGGCCATGGAATTCTCTACTaGTTCCATGGTGTTCTCCAGTCGCTCCCCAGACCC | + |
|
Preference number: 6 (lower is better) Translates to: QEICSLGHGILY*FHGVLQSLPRP Trigger: GGGTCTGGGGAGCGACTGGAGAACACCATGGAAGCAGTAGAGAATTCCATGGCCCAGCGAGCAGATCTCTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032944.9 |
||
| CDS GCA 72 bp | ATCCCGGGTGAGCTGGCAGTCAAATTCCAAGAGATCTaGTCGCTGGGCCATGGAATTCTCTACTGCTTCCAT | + |
|
Preference number: 6 (lower is better) Translates to: IPGELAVKFQEI*SLGHGILYCFH Trigger: ATGGAAGCAGTAGAGAATTCCATGGCCCAGCGAGCAGATCTCTTGGAATTTGACTGCCAGCTCACCCGGGAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032944.9 |
||
| CDS CCA 72 bp | GGCAGTCAAATTCCAAGAGATCTGCTCGCTGGGCCATaGAATTCTCTACTGCTTCCATGGTGTTCTCCAGTC | + |
|
Preference number: 6 (lower is better) Translates to: GSQIPRDLLAGP*NSLLLPWCSPV Trigger: GACTGGAGAACACCATGGAAGCAGTAGAGAATTCCATGGCCCAGCGAGCAGATCTCTTGGAATTTGACTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032944.9 |
||
| CDS TCA 72 bp | TTCCGGTCAAAGCGCCTAGTCAGGTTGGCTACCTTGTaGATGAGTTCTTCATTTCTTTCTTTGACCTCCAAG | + |
|
Preference number: 6 (lower is better) Translates to: FRSKRLVRLATL*MSSSFLSLTSK Trigger: CTTGGAGGTCAAAGAAAGAAATGAAGAACTCATTCACAAGGTAGCCAACCTGACTAGGCGCTTTGACCGGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032944.9 |
||
| CDS CCA 72 bp | ATTTCTTTCTTTGACCTCCAAGCACATGGGAGTCCTTaGAAATTTCTGGAATACATCCTCCAAACTAATCAT | + |
|
Preference number: 6 (lower is better) Translates to: ISFFDLQAHGSP*KFLEYILQTNH Trigger: ATGATTAGTTTGGAGGATGTATTCCAGAAATTTCCAAGGACTCCCATGTGCTTGGAGGTCAAAGAAAGAAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032944.9 |
||