RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GDF9 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000018238

Ensembl transcript IDs: ENSMUST00000018382.7

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGTGCTCATCCACACACACACTTCCCCCGCTCACACAGTGTGCACTaGGCAGCACGGAGAGACTGGTCACAGGAAGCTCTCTGCCCAGGC +
Preference number: 1 (lower is better)
Translates to: CAHPHTHFPRSHSVH*AARRDWSQEALCPG
Trigger: GCCTGGGCAGAGAGCTTCCTGTGACCAGTCTCTCCGTGCTGCTCAGTGCACACTGTGTGAGCGGGGGAAGTGTGTGTGTGGATGAGCACA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
3UTR GCA 90 bp TTTATGGCAACGACCAGTGAGTGTGCCCTTTACACCTACGGACACTaGACTCGATGTGCTCATCCACACACACACTTCCCCCGCTCACAC +
Preference number: 1 (lower is better)
Translates to: FMATTSECALYTYGH*TRCAHPHTHFPRSH
Trigger: GTGTGAGCGGGGGAAGTGTGTGTGTGGATGAGCACATCGAGTGCAGTGTCCGTAGGTGTAAAGGGCACACTCACTGGTCGTTGCCATAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
3UTR CCA 90 bp TGGGGAGAAAGAGCTCTCCAAATGAGTTACATTTCACTTGGTTTATaGCAACGACCAGTGAGTGTGCCCTTTACACCTACGGACACTGCA +
Preference number: 1 (lower is better)
Translates to: WGERALQMSYISLGL*QRPVSVPFTPTDTA
Trigger: TGCAGTGTCCGTAGGTGTAAAGGGCACACTCACTGGTCGTTGCCATAAACCAAGTGAAATGTAACTCATTTGGAGAGCTCTTTCTCCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
3UTR CCA 90 bp ACACTCGTGGGGAGAAAGAGCTCTCCAAATGAGTTACATTTCACTTaGTTTATGGCAACGACCAGTGAGTGTGCCCTTTACACCTACGGA +
Preference number: 1 (lower is better)
Translates to: TLVGRKSSPNELHFT*FMATTSECALYTYG
Trigger: TCCGTAGGTGTAAAGGGCACACTCACTGGTCGTTGCCATAAACCAAGTGAAATGTAACTCATTTGGAGAGCTCTTTCTCCCCACGAGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
3UTR TCA 90 bp CACAGCTACATTCTACTCGAGACTTATGCTAACAAATCTGTCCACTaGAAACTACACTCGTGGGGAGAAAGAGCTCTCCAAATGAGTTAC +
Preference number: 1 (lower is better)
Translates to: HSYILLETYANKSVH*KLHSWGERALQMSY
Trigger: GTAACTCATTTGGAGAGCTCTTTCTCCCCACGAGTGTAGTTTTCAGTGGACAGATTTGTTAGCATAAGTCTCGAGTAGAATGTAGCTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
3UTR-3UTR CCA 90 bp CTCGTGGGGAGAAAGAGCTCTCCAAATGAGTTACATTTCACTTGGTTTATGGCAGCAGCACGGAGAGACTaGTCACAGGAAGCTCTCTGC +
Preference number: 2 (lower is better)
Translates to: LVGRKSSPNELHFTWFMAAARRD*SQEALC
Trigger: GCAGAGAGCTTCCTGTGACCAGTCTCTCCGTGCTGC...TGCCATAAACCAAGTGAAATGTAACTCATTTGGAGAGCTCTTTCTCCCCACGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
3UTR TCA 72 bp CCACACACACACTTCCCCCGCTCACACAGTGTGCACTaGGCAGCACGGAGAGACTGGTCACAGGAAGCTCTC +
Preference number: 3 (lower is better)
Translates to: PHTHFPRSHSVH*AARRDWSQEAL
Trigger: GAGAGCTTCCTGTGACCAGTCTCTCCGTGCTGCTCAGTGCACACTGTGTGAGCGGGGGAAGTGTGTGTGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
3UTR GCA 72 bp CTCATCCACACACACACTTCCCCCGCTCACACAGTGTaGACTGAGCAGCACGGAGAGACTGGTCACAGGAAG +
Preference number: 3 (lower is better)
Translates to: LIHTHTSPAHTV*TEQHGETGHRK
Trigger: CTTCCTGTGACCAGTCTCTCCGTGCTGCTCAGTGCACACTGTGTGAGCGGGGGAAGTGTGTGTGTGGATGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
3UTR GCA 72 bp ACGACCAGTGAGTGTGCCCTTTACACCTACGGACACTaGACTCGATGTGCTCATCCACACACACACTTCCCC +
Preference number: 3 (lower is better)
Translates to: TTSECALYTYGH*TRCAHPHTHFP
Trigger: GGGGAAGTGTGTGTGTGGATGAGCACATCGAGTGCAGTGTCCGTAGGTGTAAAGGGCACACTCACTGGTCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
3UTR-3UTR CAA 90 bp CGTCACATAAAACCACAGCACTCTGACATGTTCACAGCTACATTCTACTCGAGACTAAGGCCCACAGCATaGCTCTGCCAGGCAGGCTTG +
Preference number: 3 (lower is better)
Translates to: RHIKPQHSDMFTATFYSRLRPTA*LCQAGL
Trigger: CAAGCCTGCCTGGCAGAGCAATGCTGTGGGCCTTAG...TCTCGAGTAGAATGTAGCTGTGAACATGTCAGAGTGCTGTGGTTTTATGTGACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
3UTR TCA 72 bp GAAAACTACACTCGTGGGGAGAAAGAGCTCTCCAAATaGGTTACATTTCACTTGGTTTATGGCAACGACCAG +
Preference number: 3 (lower is better)
Translates to: ENYTRGEKELSK*VTFHLVYGNDQ
Trigger: CTGGTCGTTGCCATAAACCAAGTGAAATGTAACTCATTTGGAGAGCTCTTTCTCCCCACGAGTGTAGTTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
3UTR TCA 72 bp ATTCTACTCGAGACTTATGCTAACAAATCTGTCCACTaGAAACTACACTCGTGGGGAGAAAGAGCTCTCCAA +
Preference number: 3 (lower is better)
Translates to: ILLETYANKSVH*KLHSWGERALQ
Trigger: TTGGAGAGCTCTTTCTCCCCACGAGTGTAGTTTTCAGTGGACAGATTTGTTAGCATAAGTCTCGAGTAGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
3UTR TCA 72 bp CAGTTTATTCTTCCGTCACATAAAACCACAGCACTCTaGCATGTTCACAGCTACATTCTACTCGAGACTTAT +
Preference number: 3 (lower is better)
Translates to: QFILPSHKTTAL*HVHSYILLETY
Trigger: ATAAGTCTCGAGTAGAATGTAGCTGTGAACATGTCAGAGTGCTGTGGTTTTATGTGACGGAAGAATAAACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR GCA 90 bp GGAAGCTCTCTGCCCAGGCACTCTAAGGCCCACAGCATTGCTCTGCCAGGCAGGCTCTTGGGGGTGCCCTaGCAGAAGACATGGCCTCCT +
Preference number: 4 (lower is better)
Translates to: GSSLPRHSKAHSIALPGRLLGVP*QKTWPP
Trigger: AGGAGGCCATGTCTTCTGGCAGGGCACCCCCAAGAG...CCTGCCTGGCAGAGCAATGCTGTGGGCCTTAGAGTGCCTGGGCAGAGAGCTTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
3UTR CAA 72 bp GAAGCTCTCTGCCCAGGCACTCTAAGGCCCACAGCATaGCTCTGCCAGGCAGGCTTGTTGAAGTGGCCCCCA +
Preference number: 4 (lower is better)
Translates to: EALCPGTLRPTA*LCQAGLLKWPP
Trigger: TGGGGGCCACTTCAACAAGCCTGCCTGGCAGAGCAATGCTGTGGGCCTTAGAGTGCCTGGGCAGAGAGCTTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR TCA 90 bp TGTGCACTGAGCAGCACGGAGAGACTGGTCACAGGAAGCTCTCTGCCCAGGCACGAGGTCACTAGGGGCTaGAGGAGGGAGGTCACATCA +
Preference number: 4 (lower is better)
Translates to: CALSSTERLVTGSSLPRHEVTRG*RREVTS
Trigger: TGATGTGACCTCCCTCCTTCAGCCCCTAGTGACCTC...GTGCCTGGGCAGAGAGCTTCCTGTGACCAGTCTCTCCGTGCTGCTCAGTGCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR CCA 90 bp GACACTGCACTCGATGTGCTCATCCACACACACACTTCCCCCGCTCACACAGTGCTGTCACCTGGTTGCTaGGTGCCTGCTCTTGCTGGG +
Preference number: 4 (lower is better)
Translates to: DTALDVLIHTHTSPAHTVLSPGC*VPALAG
Trigger: CCCAGCAAGAGCAGGCACCCAGCAACCAGGTGACAG...CACTGTGTGAGCGGGGGAAGTGTGTGTGTGGATGAGCACATCGAGTGCAGTGTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR GCA 90 bp CTCTGCCCAGGCACTCTAAGGCCCACAGCATTGCTCTGCCAGGCAGGCTTGTTGTGTAGAGGTGACTTCTaGTGGGTTTGGGAACCCCCT +
Preference number: 4 (lower is better)
Translates to: LCPGTLRPTALLCQAGLLCRGDF*WVWEPP
Trigger: AGGGGGTTCCCAAACCCAGCAGAAGTCACCTCTACA...CAACAAGCCTGCCTGGCAGAGCAATGCTGTGGGCCTTAGAGTGCCTGGGCAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR GCA 90 bp ACACTGCACTCGATGTGCTCATCCACACACACACTTCCCCCGCTCACACAGTGTCACCTGGTTGCTGGGTaGCTGCTCTTGCTGGGCACA +
Preference number: 4 (lower is better)
Translates to: TLHSMCSSTHTLPPLTQCHLVAG*LLLLGT
Trigger: TGTGCCCAGCAAGAGCAGGCACCCAGCAACCAGGTG...ACACTGTGTGAGCGGGGGAAGTGTGTGTGTGGATGAGCACATCGAGTGCAGTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR GCA 90 bp GACACTGCACTCGATGTGCTCATCCACACACACACTTCCCCCGCTCACACAGTGGTCCTGTCACCTGGTTaGTGGGTGCCTGCTCTTGCT +
Preference number: 4 (lower is better)
Translates to: DTALDVLIHTHTSPAHTVVLSPG*WVPALA
Trigger: AGCAAGAGCAGGCACCCAGCAACCAGGTGACAGGAC...CACTGTGTGAGCGGGGGAAGTGTGTGTGTGGATGAGCACATCGAGTGCAGTGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR CCA 90 bp GGAAGCTCTCTGCCCAGGCACTCTAAGGCCCACAGCATTGCTCTGCCAGGCAGGTCACTGGCTCCACTCTaGGATTCTTCAGTAGAAGCC +
Preference number: 4 (lower is better)
Translates to: GSSLPRHSKAHSIALPGRSLAPL*DSSVEA
Trigger: GGCTTCTACTGAAGAATCCCAGAGTGGAGCCAGTGA...CCTGCCTGGCAGAGCAATGCTGTGGGCCTTAGAGTGCCTGGGCAGAGAGCTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR GCA 90 bp GCTCACACAGTGTGCACTGAGCAGCACGGAGAGACTGGTCACAGGAAGCTCTCTTTCTGGACCATGGTGTaGACAGGAGAGCCGTACCGA +
Preference number: 4 (lower is better)
Translates to: AHTVCTEQHGETGHRKLSFWTMV*TGEPYR
Trigger: TCGGTACGGCTCTCCTGTGCACACCATGGTCCAGAA...AGAGAGCTTCCTGTGACCAGTCTCTCCGTGCTGCTCAGTGCACACTGTGTGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR TCA 90 bp ACACTGCACTCGATGTGCTCATCCACACACACACTTCCCCCGCTCACACAGTGTCGAAGGCCTTGGCACTaGAGGGTCCAGCTTCTCATA +
Preference number: 4 (lower is better)
Translates to: TLHSMCSSTHTLPPLTQCRRPWH*RVQLLI
Trigger: TATGAGAAGCTGGACCCTTCAGTGCCAAGGCCTTCG...ACACTGTGTGAGCGGGGGAAGTGTGTGTGTGGATGAGCACATCGAGTGCAGTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR TCA 90 bp GACACTGCACTCGATGTGCTCATCCACACACACACTTCCCCCGCTCACACAGTGATAGCAAGACCGATTTaGGCAAGTGTTCCATGGCAG +
Preference number: 4 (lower is better)
Translates to: DTALDVLIHTHTSPAHTVIARPI*ASVPWQ
Trigger: CTGCCATGGAACACTTGCTCAAATCGGTCTTGCTAT...CACTGTGTGAGCGGGGGAAGTGTGTGTGTGGATGAGCACATCGAGTGCAGTGTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR CCA 90 bp CACTCGATGTGCTCATCCACACACACACTTCCCCCGCTCACACAGTGTGCACTGTTATATTCTGGACCATaGTGTGCACAGGAGAGCCGT +
Preference number: 4 (lower is better)
Translates to: HSMCSSTHTLPPLTQCALLYSGP*CAQESR
Trigger: ACGGCTCTCCTGTGCACACCATGGTCCAGAATATAA...CAGTGCACACTGTGTGAGCGGGGGAAGTGTGTGTGTGGATGAGCACATCGAGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR CCA 90 bp GAGTGTGCCCTTTACACCTACGGACACTGCACTCGATGTGCTCATCCACACACAAAACACTCCGTCCTCTaGCACCTGGTCTTTTGTGCA +
Preference number: 4 (lower is better)
Translates to: ECALYTYGHCTRCAHPHTKHSVL*HLVFCA
Trigger: TGCACAAAAGACCAGGTGCCAGAGGACGGAGTGTTT...TGTGTGTGGATGAGCACATCGAGTGCAGTGTCCGTAGGTGTAAAGGGCACACTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR GCA 90 bp ATCTGTCCACTGAAAACTACACTCGTGGGGAGAAAGAGCTCTCCAAATGAGTTATGGTTGCTGGGTGCCTaGTCTTGCTGGGCACAGGGA +
Preference number: 4 (lower is better)
Translates to: ICPLKTTLVGRKSSPNELWLLGA*SCWAQG
Trigger: TCCCTGTGCCCAGCAAGAGCAGGCACCCAGCAACCA...TAACTCATTTGGAGAGCTCTTTCTCCCCACGAGTGTAGTTTTCAGTGGACAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR TCA 90 bp CCCTTTACACCTACGGACACTGCACTCGATGTGCTCATCCACACACACACTTCCTCTTCAGTAGAAGCCTaGGAGCTAAGGCTACTAAGA +
Preference number: 4 (lower is better)
Translates to: PFTPTDTALDVLIHTHTSSSVEA*ELRLLR
Trigger: TCTTAGTAGCCTTAGCTCTCAGGCTTCTACTGAAGA...GGAAGTGTGTGTGTGGATGAGCACATCGAGTGCAGTGTCCGTAGGTGTAAAGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR GCA 90 bp CACATAAAACCACAGCACTCTGACATGTTCACAGCTACATTCTACTCGAGACTTCTGGGTGCCTGCTCTTaGTGGGCACAGGGACTGAAG +
Preference number: 4 (lower is better)
Translates to: HIKPQHSDMFTATFYSRLLGACS*WAQGLK
Trigger: CTTCAGTCCCTGTGCCCAGCAAGAGCAGGCACCCAG...AAGTCTCGAGTAGAATGTAGCTGTGAACATGTCAGAGTGCTGTGGTTTTATGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR GCA 90 bp CGTCACATAAAACCACAGCACTCTGACATGTTCACAGCTACATTCTACTCGAGACTAGGGTTGTACCTGTaGGGGGCCACGATCCAGTTG +
Preference number: 4 (lower is better)
Translates to: RHIKPQHSDMFTATFYSRLGLYL*GATIQL
Trigger: CAACTGGATCGTGGCCCCGCACAGGTACAACCCTAG...TCTCGAGTAGAATGTAGCTGTGAACATGTCAGAGTGCTGTGGTTTTATGTGACG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR CCA 90 bp CACATAAAACCACAGCACTCTGACATGTTCACAGCTACATTCTACTCGAGACTTGGTGCCTGCTCTTGCTaGGCACAGGGACTGAAGAGC +
Preference number: 4 (lower is better)
Translates to: HIKPQHSDMFTATFYSRLGACSC*AQGLKS
Trigger: GCTCTTCAGTCCCTGTGCCCAGCAAGAGCAGGCACC...AAGTCTCGAGTAGAATGTAGCTGTGAACATGTCAGAGTGCTGTGGTTTTATGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR CCA 90 bp GTGAGTGTGCCCTTTACACCTACGGACACTGCACTCGATGTGCTCATCCACACACTCAGTCTGAAGTCATaGAGTTCACACTCGTTTTGG +
Preference number: 4 (lower is better)
Translates to: VSVPFTPTDTALDVLIHTLSLKS*SSHSFW
Trigger: CCAAAACGAGTGTGAACTCCATGACTTCAGACTGAG...TGTGTGGATGAGCACATCGAGTGCAGTGTCCGTAGGTGTAAAGGGCACACTCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR CCA 90 bp GTGGGGAGAAAGAGCTCTCCAAATGAGTTACATTTCACTTGGTTTATGGCAACGAGCCGTCGGGTTCAATaGTCAACACACTCAGGGGGC +
Preference number: 4 (lower is better)
Translates to: VGRKSSPNELHFTWFMATSRRVQ*STHSGG
Trigger: GCCCCCTGAGTGTGTTGACCATTGAACCCGACGGCT...CGTTGCCATAAACCAAGTGAAATGTAACTCATTTGGAGAGCTCTTTCTCCCCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR CCA 90 bp CTCGTGGGGAGAAAGAGCTCTCCAAATGAGTTACATTTCACTTGGTTTATGGCAAGAGGTGACTTCTGCTaGGTTTGGGAACCCCCTCTT +
Preference number: 4 (lower is better)
Translates to: LVGRKSSPNELHFTWFMARGDFC*VWEPPL
Trigger: AAGAGGGGGTTCCCAAACCCAGCAGAAGTCACCTCT...TGCCATAAACCAAGTGAAATGTAACTCATTTGGAGAGCTCTTTCTCCCCACGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR CCA 90 bp CACATAAAACCACAGCACTCTGACATGTTCACAGCTACATTCTACTCGAGACTTGAATGCTCCTCTCGCTaGAGGTCACTAGGGGCTGAA +
Preference number: 4 (lower is better)
Translates to: HIKPQHSDMFTATFYSRLECSSR*RSLGAE
Trigger: TTCAGCCCCTAGTGACCTCCAGCGAGAGGAGCATTC...AAGTCTCGAGTAGAATGTAGCTGTGAACATGTCAGAGTGCTGTGGTTTTATGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR CCA 90 bp CAAATGAGTTACATTTCACTTGGTTTATGGCAACGACCAGTGAGTGTGCCCTTTACATACAGGTCACAGTaGAGGAGGAAGAGGCAGAGT +
Preference number: 4 (lower is better)
Translates to: QMSYISLGLWQRPVSVPFTYRSQ*RRKRQS
Trigger: ACTCTGCCTCTTCCTCCTCCACTGTGACCTGTATGT...AAAGGGCACACTCACTGGTCGTTGCCATAAACCAAGTGAAATGTAACTCATTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR CCA 90 bp CAGCACTCTGACATGTTCACAGCTACATTCTACTCGAGACTTATGCTAACAAATGTAAAGGCCTCCAGGTaGACTGAAGAGACTGCCAAG +
Preference number: 4 (lower is better)
Translates to: QHSDMFTATFYSRLMLTNVKASR*TEETAK
Trigger: CTTGGCAGTCTCTTCAGTCCACCTGGAGGCCTTTAC...ATTTGTTAGCATAAGTCTCGAGTAGAATGTAGCTGTGAACATGTCAGAGTGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR TCA 90 bp CAGCACTCTGACATGTTCACAGCTACATTCTACTCGAGACTTATGCTAACAAATAAATTGACAGACAGGTaGATGCTCCTCTCGCTGGAG +
Preference number: 4 (lower is better)
Translates to: QHSDMFTATFYSRLMLTNKLTDR*MLLSLE
Trigger: CTCCAGCGAGAGGAGCATTCACCTGTCTGTCAATTT...ATTTGTTAGCATAAGTCTCGAGTAGAATGTAGCTGTGAACATGTCAGAGTGCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR CCA 90 bp CAGCACTCTGACATGTTCACAGCTACATTCTACTCGAGACTTATGCTAACAAATACTCCACATTTTCACTaGCTCCACTCTGGGATTCTT +
Preference number: 4 (lower is better)
Translates to: QHSDMFTATFYSRLMLTNTPHFH*LHSGIL
Trigger: AAGAATCCCAGAGTGGAGCCAGTGAAAATGTGGAGT...ATTTGTTAGCATAAGTCTCGAGTAGAATGTAGCTGTGAACATGTCAGAGTGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR CAA 90 bp CTGAGCAGCACGGAGAGACTGGTCACAGGAAGCTCTCTGCCCAGGCACTCTAAGGGTCCTGTCACCTGGTaGCTGGGTGCCTGCTCTTGC +
Preference number: 5 (lower is better)
Translates to: LSSTERLVTGSSLPRHSKGPVTW*LGACSC
Trigger: GCAAGAGCAGGCACCCAGCAACCAGGTGACAGGACC...CTTAGAGTGCCTGGGCAGAGAGCTTCCTGTGACCAGTCTCTCCGTGCTGCTCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR CAA 90 bp GAAGCTCTCTGCCCAGGCACTCTAAGGCCCACAGCATTGCTCTGCCAGGCAGGCTTACAGTACCTAGGGTaGTACCTGTGCGGGGCCACG +
Preference number: 5 (lower is better)
Translates to: EALCPGTLRPTALLCQAGLQYLG*YLCGAT
Trigger: CGTGGCCCCGCACAGGTACAACCCTAGGTACTGTAA...GCCTGCCTGGCAGAGCAATGCTGTGGGCCTTAGAGTGCCTGGGCAGAGAGCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS GCA 90 bp GATGCTGTAAGAAGTGGCCCCTTCGCTTCGGAGCGGATGGCTTTCTaGCCTCGACGGCGCCGGGGAGATCTTTCCACCTCAATAGCTTCC +
Preference number: 5 (lower is better)
Translates to: DAVRSGPFASERMAF*PRRRRGDLSTSIAS
Trigger: GGAAGCTATTGAGGTGGAAAGATCTCCCCGGCGCCGTCGAGGGCAGAAAGCCATCCGCTCCGAAGCGAAGGGGCCACTTCTTACAGCATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS GCA 90 bp TGGAGCCGTCGGGTTCAATGGTCAACACACTCAGGGGGCTGTACTTaGCCGGCACACACGAAGGCCTTGGCACTGAAGGGTCCAGCTTCT +
Preference number: 5 (lower is better)
Translates to: WSRRVQWSTHSGGCT*PAHTKALALKGPAS
Trigger: AGAAGCTGGACCCTTCAGTGCCAAGGCCTTCGTGTGTGCCGGGCAAGTACAGCCCCCTGAGTGTGTTGACCATTGAACCCGACGGCTCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR CAA 90 bp GTGAGTGTGCCCTTTACACCTACGGACACTGCACTCGATGTGCTCATCCACACAGCACACACGAAGGCCTaGGCACTGAAGGGTCCAGCT +
Preference number: 5 (lower is better)
Translates to: VSVPFTPTDTALDVLIHTAHTKA*ALKGPA
Trigger: AGCTGGACCCTTCAGTGCCAAGGCCTTCGTGTGTGC...TGTGTGGATGAGCACATCGAGTGCAGTGTCCGTAGGTGTAAAGGGCACACTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS GCA 90 bp AGACCTGTCAGTCCCATCTACAGGCAGCAGCAAGGACCAGGGGTCTaGCTCAGACTCCACATTTTCACTGGCTCCACTCTGGGATTCTTC +
Preference number: 5 (lower is better)
Translates to: RPVSPIYRQQQGPGV*LRLHIFTGSTLGFF
Trigger: GAAGAATCCCAGAGTGGAGCCAGTGAAAATGTGGAGTCTGAGGCAGACCCCTGGTCCTTGCTGCTGCCTGTAGATGGGACTGACAGGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR CAA 90 bp CTCTGCCCAGGCACTCTAAGGCCCACAGCATTGCTCTGCCAGGCAGGCTTGTTGGAGGAAGAGGCAGAGTaGTTCAGAGTGTATAGCAAG +
Preference number: 5 (lower is better)
Translates to: LCPGTLRPTALLCQAGLLEEEAE*FRVYSK
Trigger: CTTGCTATACACTCTGAACAACTCTGCCTCTTCCTC...CAACAAGCCTGCCTGGCAGAGCAATGCTGTGGGCCTTAGAGTGCCTGGGCAGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS TCA 90 bp ACTCAGGGGGCTGTACTTGCCCGGCACACACGAAGGCCTTGGCACTaGAGGGTCCAGCTTCTCATAGATTATATTCTGGACCATGGTGTG +
Preference number: 5 (lower is better)
Translates to: TQGAVLARHTRRPWH*RVQLLIDYILDHGV
Trigger: CACACCATGGTCCAGAATATAATCTATGAGAAGCTGGACCCTTCAGTGCCAAGGCCTTCGTGTGTGCCGGGCAAGTACAGCCCCCTGAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS CCA 90 bp TCATGTCTTCGTACTCTTTGTAAGCGATGGAGCCGTCGGGTTCAATaGTCAACACACTCAGGGGGCTGTACTTGCCCGGCACACACGAAG +
Preference number: 5 (lower is better)
Translates to: SCLRTLCKRWSRRVQ*STHSGGCTCPAHTK
Trigger: CTTCGTGTGTGCCGGGCAAGTACAGCCCCCTGAGTGTGTTGACCATTGAACCCGACGGCTCCATCGCTTACAAAGAGTACGAAGACATGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS TCA 90 bp GGAGGTCACATCAATCTCAATCCATCTGTGTTTCTTCAGGGTGAATaGGTACGGTGCTCTTGGGGGTGCCCTGCCAGAAGACATGGCCTC +
Preference number: 5 (lower is better)
Translates to: GGHINLNPSVFLQGE*VRCSWGCPARRHGL
Trigger: GAGGCCATGTCTTCTGGCAGGGCACCCCCAAGAGCACCGTACTCATTCACCCTGAAGAAACACAGATGGATTGAGATTGATGTGACCTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS TCA 90 bp GGAGGGAGGTCACATCAATCTCAATCCATCTGTGTTTCTTCAGGGTaGATGAGTACGGTGCTCTTGGGGGTGCCCTGCCAGAAGACATGG +
Preference number: 5 (lower is better)
Translates to: GGRSHQSQSICVSSG*MSTVLLGVPCQKTW
Trigger: CCATGTCTTCTGGCAGGGCACCCCCAAGAGCACCGTACTCATTCACCCTGAAGAAACACAGATGGATTGAGATTGATGTGACCTCCCTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS TCA 90 bp CTGGGTGCTTGTGTCGTTGAGATACAAGATGAGGGAAGGAGGCACTaGGAGAGGCATGCTAAACACTCCGTCCTCTGGCACCTGGTCTTT +
Preference number: 5 (lower is better)
Translates to: LGACVVEIQDEGRRH*ERHAKHSVLWHLVF
Trigger: AAAGACCAGGTGCCAGAGGACGGAGTGTTTAGCATGCCTCTCTCAGTGCCTCCTTCCCTCATCTTGTATCTCAACGACACAAGCACCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR CAA 90 bp TGCACTGAGCAGCACGGAGAGACTGGTCACAGGAAGCTCTCTGCCCAGGCACTCGGGAAAAGAAACTGTTaGAAGTATTCGCTGAGGTTG +
Preference number: 5 (lower is better)
Translates to: CTEQHGETGHRKLSAQALGKRNC*KYSLRL
Trigger: CAACCTCAGCGAATACTTCAAACAGTTTCTTTTCCC...GAGTGCCTGGGCAGAGAGCTTCCTGTGACCAGTCTCTCCGTGCTGCTCAGTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS CCA 90 bp AAGACATGGCCTCCTTTACCACAAGGTCACACATACAGGTCACAGTaGAGGAGGAAGAGGCAGAGTTGTTCAGAGTGTATAGCAAGACCG +
Preference number: 5 (lower is better)
Translates to: KTWPPLPQGHTYRSQ*RRKRQSCSECIARP
Trigger: CGGTCTTGCTATACACTCTGAACAACTCTGCCTCTTCCTCCTCCACTGTGACCTGTATGTGTGACCTTGTGGTAAAGGAGGCCATGTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR CAA 90 bp ATAAAACCACAGCACTCTGACATGTTCACAGCTACATTCTACTCGAGACTTATGTGGGTGCTTGTGTCGTaGAGATACAAGATGAGGGAA +
Preference number: 5 (lower is better)
Translates to: IKPQHSDMFTATFYSRLMWVLVS*RYKMRE
Trigger: TTCCCTCATCTTGTATCTCAACGACACAAGCACCCA...CATAAGTCTCGAGTAGAATGTAGCTGTGAACATGTCAGAGTGCTGTGGTTTTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR CAA 90 bp CGTCACATAAAACCACAGCACTCTGACATGTTCACAGCTACATTCTACTCGAGAGAGTTCACACTCGTTTaGGGGGAAAAGAAACTGTTT +
Preference number: 5 (lower is better)
Translates to: RHIKPQHSDMFTATFYSREFTLV*GEKKLF
Trigger: AAACAGTTTCTTTTCCCCCAAAACGAGTGTGAACTC...TCTCGAGTAGAATGTAGCTGTGAACATGTCAGAGTGCTGTGGTTTTATGTGACG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS-3UTR CAA 90 bp CAAATGAGTTACATTTCACTTGGTTTATGGCAACGACCAGTGAGTGTGCCCTTTAAGTATTCGCTGAGGTaGAAGGATGCTGTAAGAAGT +
Preference number: 5 (lower is better)
Translates to: QMSYISLGLWQRPVSVPFKYSLR*KDAVRS
Trigger: ACTTCTTACAGCATCCTTCAACCTCAGCGAATACTT...AAAGGGCACACTCACTGGTCGTTGCCATAAACCAAGTGAAATGTAACTCATTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS CAA 90 bp ATGGAGCCGTCGGGTTCAATGGTCAACACACTCAGGGGGCTGTACTaGCCCGGCACACACGAAGGCCTTGGCACTGAAGGGTCCAGCTTC +
Preference number: 6 (lower is better)
Translates to: MEPSGSMVNTLRGLY*PGTHEGLGTEGSSF
Trigger: GAAGCTGGACCCTTCAGTGCCAAGGCCTTCGTGTGTGCCGGGCAAGTACAGCCCCCTGAGTGTGTTGACCATTGAACCCGACGGCTCCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS GCA 72 bp CGGGTTCAATGGTCAACACACTCAGGGGGCTGTACTTaGCCGGCACACACGAAGGCCTTGGCACTGAAGGGT +
Preference number: 6 (lower is better)
Translates to: RVQWSTHSGGCT*PAHTKALALKG
Trigger: ACCCTTCAGTGCCAAGGCCTTCGTGTGTGCCGGGCAAGTACAGCCCCCTGAGTGTGTTGACCATTGAACCCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS CAA 72 bp TCGGGTTCAATGGTCAACACACTCAGGGGGCTGTACTaGCCCGGCACACACGAAGGCCTTGGCACTGAAGGG +
Preference number: 6 (lower is better)
Translates to: SGSMVNTLRGLY*PGTHEGLGTEG
Trigger: CCCTTCAGTGCCAAGGCCTTCGTGTGTGCCGGGCAAGTACAGCCCCCTGAGTGTGTTGACCATTGAACCCGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS GCA 72 bp TTCTGGACCATGGTGTGCACAGGAGAGCCGTACCGATaGCTGACCGCCCTAGGACAGTCCCCTTTACAGTAC +
Preference number: 6 (lower is better)
Translates to: FWTMVCTGEPYR*LTALGQSPLQY
Trigger: GTACTGTAAAGGGGACTGTCCTAGGGCGGTCAGGCATCGGTACGGCTCTCCTGTGCACACCATGGTCCAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS CAA 72 bp ACCGCCCTAGGACAGTCCCCTTTACAGTACCTAGGGTaGTACCTGTGCGGGGCCACGATCCAGTTGTCCCAT +
Preference number: 6 (lower is better)
Translates to: TALGQSPLQYLG*YLCGATIQLSH
Trigger: ATGGGACAACTGGATCGTGGCCCCGCACAGGTACAACCCTAGGTACTGTAAAGGGGACTGTCCTAGGGCGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS GCA 72 bp AGTCCCATCTACAGGCAGCAGCAAGGACCAGGGGTCTaGCTCAGACTCCACATTTTCACTGGCTCCACTCTG +
Preference number: 6 (lower is better)
Translates to: SPIYRQQQGPGV*LRLHIFTGSTL
Trigger: CAGAGTGGAGCCAGTGAAAATGTGGAGTCTGAGGCAGACCCCTGGTCCTTGCTGCTGCCTGTAGATGGGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS CCA 72 bp AGTACGGTGCTCTTGGGGGTGCCCTGCCAGAAGACATaGCCTCCTTTACCACAAGGTCACACATACAGGTCA +
Preference number: 6 (lower is better)
Translates to: STVLLGVPCQKT*PPLPQGHTYRS
Trigger: TGACCTGTATGTGTGACCTTGTGGTAAAGGAGGCCATGTCTTCTGGCAGGGCACCCCCAAGAGCACCGTACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS CAA 72 bp TCAGGGGGCTGTACTTGCCCGGCACACACGAAGGCCTaGGCACTGAAGGGTCCAGCTTCTCATAGATTATAT +
Preference number: 6 (lower is better)
Translates to: SGGCTCPAHTKA*ALKGPASHRLY
Trigger: ATATAATCTATGAGAAGCTGGACCCTTCAGTGCCAAGGCCTTCGTGTGTGCCGGGCAAGTACAGCCCCCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS CAA 90 bp TCAACACACTCAGGGGGCTGTACTTGCCCGGCACACACGAAGGCCTaGGCACTGAAGGGTCCAGCTTCTCATAGATTATATTCTGGACCA +
Preference number: 6 (lower is better)
Translates to: STHSGGCTCPAHTKA*ALKGPASHRLYSGP
Trigger: TGGTCCAGAATATAATCTATGAGAAGCTGGACCCTTCAGTGCCAAGGCCTTCGTGTGTGCCGGGCAAGTACAGCCCCCTGAGTGTGTTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS TCA 72 bp GCTGTACTTGCCCGGCACACACGAAGGCCTTGGCACTaGAGGGTCCAGCTTCTCATAGATTATATTCTGGAC +
Preference number: 6 (lower is better)
Translates to: AVLARHTRRPWH*RVQLLIDYILD
Trigger: GTCCAGAATATAATCTATGAGAAGCTGGACCCTTCAGTGCCAAGGCCTTCGTGTGTGCCGGGCAAGTACAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS TCA 72 bp TCACATCAATCTCAATCCATCTGTGTTTCTTCAGGGTaGATGAGTACGGTGCTCTTGGGGGTGCCCTGCCAG +
Preference number: 6 (lower is better)
Translates to: SHQSQSICVSSG*MSTVLLGVPCQ
Trigger: CTGGCAGGGCACCCCCAAGAGCACCGTACTCATTCACCCTGAAGAAACACAGATGGATTGAGATTGATGTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS TCA 72 bp CTGTGCGGGGCCACGATCCAGTTGTCCCATTTGAGCTaGCTAAAACTCAGTCTGAAGTCATGGAGTTCACAC +
Preference number: 6 (lower is better)
Translates to: LCGATIQLSHLS*LKLSLKSWSSH
Trigger: GTGTGAACTCCATGACTTCAGACTGAGTTTTAGTCAGCTCAAATGGGACAACTGGATCGTGGCCCCGCACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS TCA 72 bp ATCAATCTCAATCCATCTGTGTTTCTTCAGGGTGAATaGGTACGGTGCTCTTGGGGGTGCCCTGCCAGAAGA +
Preference number: 6 (lower is better)
Translates to: INLNPSVFLQGE*VRCSWGCPARR
Trigger: TCTTCTGGCAGGGCACCCCCAAGAGCACCGTACTCATTCACCCTGAAGAAACACAGATGGATTGAGATTGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS GCA 72 bp AAGAAACTGTTTGAAGTATTCGCTGAGGTTGAAGGATaGTGTAAGAAGTGGCCCCTTCGCTTCGGAGCGGAT +
Preference number: 6 (lower is better)
Translates to: KKLFEVFAEVEG*CKKWPLRFGAD
Trigger: ATCCGCTCCGAAGCGAAGGGGCCACTTCTTACAGCATCCTTCAACCTCAGCGAATACTTCAAACAGTTTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7
CDS CAA 90 bp ACAAGGTCACACATACAGGTCACAGTGGAGGAGGAAGAGGCAGAGTaGTTCAGAGTGTATAGCAAGACCGATTTGAGCAAGTGTTCCATG +
Preference number: 6 (lower is better)
Translates to: TRSHIQVTVEEEEAE*FRVYSKTDLSKCSM
Trigger: CATGGAACACTTGCTCAAATCGGTCTTGCTATACACTCTGAACAACTCTGCCTCTTCCTCCTCCACTGTGACCTGTATGTGTGACCTTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000018382.7