Pregenerated sensors for GDF3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030117Ensembl transcript IDs: ENSMUST00000032211.5
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGACGCATGATCACCTGTAACTTCAGGGGATCTGACTCCCTCTTCTaGCCGCCACGGGTTCCTGCATGTACACCGTGCACTTACACAAGC | + |
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Preference number: 1 (lower is better) Translates to: RRMITCNFRGSDSLF*PPRVPACTPCTYTS Trigger: GCTTGTGTAAGTGCACGGTGTACATGCAGGAACCCGTGGCGGCCAGAAGAGGGAGTCAGATCCCCTGAAGTTACAGGTGATCATGCGTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| 3UTR TCA 90 bp | AGCTGTAATCCCAGCACACAGGAGGTAGAGGAAAGAGAATTGCCATaGGTTCAAGGCCAGCAAAGATGTATAATAAGACCTTGTTTCAAA | + |
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Preference number: 1 (lower is better) Translates to: SCNPSTQEVEERELP*VQGQQRCIIRPCFK Trigger: TTTGAAACAAGGTCTTATTATACATCTTTGCTGGCCTTGAACTCATGGCAATTCTCTTTCCTCTACCTCCTGTGTGCTGGGATTACAGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| 3UTR-3UTR CCA 90 bp | GGCCGCCACGGGTTCCTGCATGTACACCGTGCACTTACACAAGCACCCACACATAGCATAAGCCAAAGGTaGGGTGGTAGTTTTATTAAA | + |
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Preference number: 2 (lower is better) Translates to: GRHGFLHVHRALTQAPTHSISQR*GGSFIK Trigger: TTTAATAAAACTACCACCCCACCTTTGGCTTATGCT...ATGTGTGGGTGCTTGTGTAAGTGCACGGTGTACATGCAGGAACCCGTGGCGGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| 3UTR CAA 90 bp | AGAATTGCCATGAGTTCAAGGCCAGCAAAGATGTATAATAAGACCTaGTTTCAAACAAGAACAAGAAGCCCAGCTACTATGCATAATGAG | + |
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Preference number: 2 (lower is better) Translates to: RIAMSSRPAKMYNKT*FQTRTRSPATMHNE Trigger: CTCATTATGCATAGTAGCTGGGCTTCTTGTTCTTGTTTGAAACAAGGTCTTATTATACATCTTTGCTGGCCTTGAACTCATGGCAATTCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| 3UTR CCA 72 bp | ATCACCTGTAACTTCAGGGGATCTGACTCCCTCTTCTaGCCGCCACGGGTTCCTGCATGTACACCGTGCACT | + |
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Preference number: 3 (lower is better) Translates to: ITCNFRGSDSLF*PPRVPACTPCT Trigger: AGTGCACGGTGTACATGCAGGAACCCGTGGCGGCCAGAAGAGGGAGTCAGATCCCCTGAAGTTACAGGTGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| 3UTR TCA 72 bp | CCCAGCACACAGGAGGTAGAGGAAAGAGAATTGCCATaGGTTCAAGGCCAGCAAAGATGTATAATAAGACCT | + |
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Preference number: 3 (lower is better) Translates to: PSTQEVEERELP*VQGQQRCIIRP Trigger: AGGTCTTATTATACATCTTTGCTGGCCTTGAACTCATGGCAATTCTCTTTCCTCTACCTCCTGTGTGCTGGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| 3UTR TCA 72 bp | GCCTTTAATTCTAGGATTCAGGAAGCAGAGGCAGTTTaGTCTCTTGTGCGTTTGAGGTTAGCCTGGTCTACA | + |
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Preference number: 3 (lower is better) Translates to: AFNSRIQEAEAV*SLVRLRLAWST Trigger: TGTAGACCAGGCTAACCTCAAACGCACAAGAGATCAAACTGCCTCTGCTTCCTGAATCCTAGAATTAAAGGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR CCA 90 bp | GGCCGCCACGGGTTCCTGCATGTACACCGTGCACTTACACAAGCACCCACACATGGACACAGACAGCCTTaGGGACCTTGGGGTCAGCCA | + |
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Preference number: 4 (lower is better) Translates to: GRHGFLHVHRALTQAPTHGHRQP*GPWGQP Trigger: TGGCTGACCCCAAGGTCCCCAAGGCTGTCTGTGTCC...ATGTGTGGGTGCTTGTGTAAGTGCACGGTGTACATGCAGGAACCCGTGGCGGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR CCA 90 bp | GCCGCCACGGGTTCCTGCATGTACACCGTGCACTTACACAAGCACCCACACATACCTTGGGGACAGAGATaGCCGCCCTCCTTTTTCTGG | + |
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Preference number: 4 (lower is better) Translates to: AATGSCMYTVHLHKHPHIPWGQR*PPSFFW Trigger: CCAGAAAAAGGAGGGCGGCCATCTCTGTCCCCAAGG...TATGTGTGGGTGCTTGTGTAAGTGCACGGTGTACATGCAGGAACCCGTGGCGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR CCA 90 bp | GGCCGCCACGGGTTCCTGCATGTACACCGTGCACTTACACAAGCACCCACACATCAGCCTTGGGGACCTTaGGGTCAGCCATATGCATCA | + |
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Preference number: 4 (lower is better) Translates to: GRHGFLHVHRALTQAPTHQPWGP*GQPYAS Trigger: TGATGCATATGGCTGACCCCAAGGTCCCCAAGGCTG...ATGTGTGGGTGCTTGTGTAAGTGCACGGTGTACATGCAGGAACCCGTGGCGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR TCA 90 bp | GCCGCCACGGGTTCCTGCATGTACACCGTGCACTTACACAAGCACCCACACATATGGTCTGGGAGAAGCTaGAGCAGGTTCCCACGAACA | + |
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Preference number: 4 (lower is better) Translates to: AATGSCMYTVHLHKHPHIWSGRS*SRFPRT Trigger: TGTTCGTGGGAACCTGCTTCAGCTTCTCCCAGACCA...TATGTGTGGGTGCTTGTGTAAGTGCACGGTGTACATGCAGGAACCCGTGGCGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR TCA 90 bp | CGCCACGGGTTCCTGCATGTACACCGTGCACTTACACAAGCACCCACACATAAAGCGCACCCTGCAGGTTaGACTGGAGCTGACCTTGAG | + |
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Preference number: 4 (lower is better) Translates to: RHGFLHVHRALTQAPTHKAHPAG*TGADLE Trigger: CTCAAGGTCAGCTCCAGTTCAACCTGCAGGGTGCGC...TTTATGTGTGGGTGCTTGTGTAAGTGCACGGTGTACATGCAGGAACCCGTGGCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR TCA 90 bp | GCCGCCACGGGTTCCTGCATGTACACCGTGCACTTACACAAGCACCCACACATAACAGGTTGGAACCTGTaGGGTGAAGGCGCTTTCTCT | + |
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Preference number: 4 (lower is better) Translates to: AATGSCMYTVHLHKHPHITGWNL*GEGAFS Trigger: AGAGAAAGCGCCTTCACCTCACAGGTTCCAACCTGT...TATGTGTGGGTGCTTGTGTAAGTGCACGGTGTACATGCAGGAACCCGTGGCGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR CCA 90 bp | GGCCGCCACGGGTTCCTGCATGTACACCGTGCACTTACACAAGCACCCACACATGAGTCAGCTGGGCCATaGTCAACTTTGCCTTTTCTT | + |
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Preference number: 4 (lower is better) Translates to: GRHGFLHVHRALTQAPTHESAGP*STLPFL Trigger: AAGAAAAGGCAAAGTTGACCATGGCCCAGCTGACTC...ATGTGTGGGTGCTTGTGTAAGTGCACGGTGTACATGCAGGAACCCGTGGCGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR CCA 90 bp | CGCCACGGGTTCCTGCATGTACACCGTGCACTTACACAAGCACCCACACATAAAAGCAACCACCAGCTCTaGTCGCAGGTTATAGTAGGA | + |
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Preference number: 4 (lower is better) Translates to: RHGFLHVHRALTQAPTHKSNHQL*SQVIVG Trigger: TCCTACTATAACCTGCGACCAGAGCTGGTGGTTGCT...TTTATGTGTGGGTGCTTGTGTAAGTGCACGGTGTACATGCAGGAACCCGTGGCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR CCA 90 bp | GGTTCCTGCATGTACACCGTGCACTTACACAAGCACCCACACATAAAACAAACAGATAGAGCATGGAGATaGGCGAGAGCTTGGTGGGGA | + |
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Preference number: 4 (lower is better) Translates to: GSCMYTVHLHKHPHIKQTDRAWR*ARAWWG Trigger: TCCCCACCAAGCTCTCGCCCATCTCCATGCTCTATC...TGTTTGTTTTATGTGTGGGTGCTTGTGTAAGTGCACGGTGTACATGCAGGAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR CCA 90 bp | GCTCACCAAGGGGTCCATAGTCATACACAAATGTGTGTAATTGTGGGGCTCATGCCGCCCTCCTTTTTCTaGAAGAAGGATGACAGTGTT | + |
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Preference number: 4 (lower is better) Translates to: AHQGVHSHTQMCVIVGLMPPSFF*KKDDSV Trigger: AACACTGTCATCCTTCTTCCAGAAAAAGGAGGGCGG...CATGAGCCCCACAATTACACACATTTGTGTATGACTATGGACCCCTTGGTGAGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR TCA 90 bp | GCCACGGGTTCCTGCATGTACACCGTGCACTTACACAAGCACCCACACATAAAAAGTATCTGTCCTCTTTaGCCAGAATCTCTAAGTGTA | + |
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Preference number: 4 (lower is better) Translates to: ATGSCMYTVHLHKHPHIKSICPL*PESLSV Trigger: TACACTTAGAGATTCTGGTCAAAGAGGACAGATACT...TTTTATGTGTGGGTGCTTGTGTAAGTGCACGGTGTACATGCAGGAACCCGTGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR TCA 90 bp | GCCACGGGTTCCTGCATGTACACCGTGCACTTACACAAGCACCCACACATAAAACATAATGTCGGAGAATaGCGTTCTTATCACTATCCT | + |
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Preference number: 4 (lower is better) Translates to: ATGSCMYTVHLHKHPHIKHNVGE*RSYHYP Trigger: AGGATAGTGATAAGAACGTCATTCTCCGACATTATG...TTTTATGTGTGGGTGCTTGTGTAAGTGCACGGTGTACATGCAGGAACCCGTGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR GCA 90 bp | CCAGCAAAGATGTATAATAAGACCTTGTTTCAAACAAGAACAAGAAGCCCAGCTGCGATGACCCACTTGTaGCAACCCAGGTCCTGGAAG | + |
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Preference number: 4 (lower is better) Translates to: PAKMYNKTLFQTRTRSPAAMTHL*QPRSWK Trigger: CTTCCAGGACCTGGGTTGGCACAAGTGGGTCATCGC...AGCTGGGCTTCTTGTTCTTGTTTGAAACAAGGTCTTATTATACATCTTTGCTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR TCA 90 bp | GCTCACCAAGGGGTCCATAGTCATACACAAATGTGTGTAATTGTGGGGCTCATGGCATCAGAGCCTGCATaGAAGCATAATTGGAACTAT | + |
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Preference number: 4 (lower is better) Translates to: AHQGVHSHTQMCVIVGLMASEPA*KHNWNY Trigger: ATAGTTCCAATTATGCTTTCATGCAGGCTCTGATGC...CATGAGCCCCACAATTACACACATTTGTGTATGACTATGGACCCCTTGGTGAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR GCA 90 bp | GGTTCCTGCATGTACACCGTGCACTTACACAAGCACCCACACATAAAACAAACAGGCCATGGTCAACTTTaGCTTTTCTTTGATGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: GSCMYTVHLHKHPHIKQTGHGQL*LFFDGR Trigger: TCTGCCATCAAAGAAAAGGCAAAGTTGACCATGGCC...TGTTTGTTTTATGTGTGGGTGCTTGTGTAAGTGCACGGTGTACATGCAGGAACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR GCA 90 bp | AGCATAAGCCAAAGGTGGGGTGGTAGTTTTATTAAAGGATTTACCCTAAGCACATCCATGACAGTAATTTaGCATGAACCCCTTAGGGGC | + |
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Preference number: 4 (lower is better) Translates to: SISQRWGGSFIKGFTLSTSMTVI*HEPLRG Trigger: GCCCCTAAGGGGTTCATGGCAAATTACTGTCATGGA...TGTGCTTAGGGTAAATCCTTTAATAAAACTACCACCCCACCTTTGGCTTATGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| 3UTR CAA 72 bp | ATGAGTTCAAGGCCAGCAAAGATGTATAATAAGACCTaGTTTCAAACAAGAACAAGAAGCCCAGCTACTATG | + |
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Preference number: 4 (lower is better) Translates to: MSSRPAKMYNKT*FQTRTRSPATM Trigger: CATAGTAGCTGGGCTTCTTGTTCTTGTTTGAAACAAGGTCTTATTATACATCTTTGCTGGCCTTGAACTCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR CCA 90 bp | ATGAGTTCAAGGCCAGCAAAGATGTATAATAAGACCTTGTTTCAAACAAGAACAAGACAGGAGCCATCTTaGAAAGGTTTCTGTGTATTA | + |
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Preference number: 4 (lower is better) Translates to: MSSRPAKMYNKTLFQTRTRQEPS*KGFCVL Trigger: TAATACACAGAAACCTTTCCAAGATGGCTCCTGTCT...TGTTCTTGTTTGAAACAAGGTCTTATTATACATCTTTGCTGGCCTTGAACTCAT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR CAA 90 bp | GCCGCCACGGGTTCCTGCATGTACACCGTGCACTTACACAAGCACCCACACATAGGGACACAGACAGCCTaGGGGACCTTGGGGTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: AATGSCMYTVHLHKHPHIGTQTA*GTLGSA Trigger: GGCTGACCCCAAGGTCCCCAAGGCTGTCTGTGTCCC...TATGTGTGGGTGCTTGTGTAAGTGCACGGTGTACATGCAGGAACCCGTGGCGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR CAA 90 bp | TGGCCGCCACGGGTTCCTGCATGTACACCGTGCACTTACACAAGCACCCACACAGAGATGGGCGAGAGCTaGGTGGGGACACAGACAGCC | + |
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Preference number: 5 (lower is better) Translates to: WPPRVPACTPCTYTSTHTEMGES*VGTQTA Trigger: GGCTGTCTGTGTCCCCACCAAGCTCTCGCCCATCTC...TGTGTGGGTGCTTGTGTAAGTGCACGGTGTACATGCAGGAACCCGTGGCGGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR CAA 90 bp | TGGCCGCCACGGGTTCCTGCATGTACACCGTGCACTTACACAAGCACCCACACATTCCTACAGAAACCCTaGGGGACAGAGATGGCCGCC | + |
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Preference number: 5 (lower is better) Translates to: WPPRVPACTPCTYTSTHTFLQKP*GTEMAA Trigger: GGCGGCCATCTCTGTCCCCAAGGGTTTCTGTAGGAA...TGTGTGGGTGCTTGTGTAAGTGCACGGTGTACATGCAGGAACCCGTGGCGGCCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS CCA 90 bp | GAGGCATGGAGAGAGCGGAGCAGCCGGTCACAGGGGTTCTCGGGCTaGACAGTTACCCTGGAGTATCTGTCCTCTTTGACCAGAATCTCT | + |
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Preference number: 5 (lower is better) Translates to: EAWRERSSRSQGFSG*TVTLEYLSSLTRIS Trigger: AGAGATTCTGGTCAAAGAGGACAGATACTCCAGGGTAACTGTCCAGCCCGAGAACCCCTGTGACCGGCTGCTCCGCTCTCTCCATGCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR CAA 90 bp | GCCACGGGTTCCTGCATGTACACCGTGCACTTACACAAGCACCCACACATAAAAGGGGCGATGACCCACTaGTGCCAACCCAGGTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: ATGSCMYTVHLHKHPHIKGAMTH*CQPRSW Trigger: CCAGGACCTGGGTTGGCACAAGTGGGTCATCGCCCC...TTTTATGTGTGGGTGCTTGTGTAAGTGCACGGTGTACATGCAGGAACCCGTGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS CCA 90 bp | CAGACAGAGCAACCACCAGCTCTGGTCGCAGGTTATAGTAGGACCTaGGCCCCAAGTCTAGAGTCAGCTGGGCCATGGTCAACTTTGCCT | + |
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Preference number: 5 (lower is better) Translates to: QTEQPPALVAGYSRT*APSLESAGPWSTLP Trigger: AGGCAAAGTTGACCATGGCCCAGCTGACTCTAGACTTGGGGCCCAGGTCCTACTATAACCTGCGACCAGAGCTGGTGGTTGCTCTGTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR CAA 90 bp | GCCGCCACGGGTTCCTGCATGTACACCGTGCACTTACACAAGCACCCACACATACAAAAGGTCAGAGTCTaGAAACTCGGATGTCTGGCC | + |
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Preference number: 5 (lower is better) Translates to: AATGSCMYTVHLHKHPHIQKVRV*KLGCLA Trigger: GGCCAGACATCCGAGTTTCAAGACTCTGACCTTTTG...TATGTGTGGGTGCTTGTGTAAGTGCACGGTGTACATGCAGGAACCCGTGGCGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS TCA 90 bp | GAAGGCGCTTTCTCTAATCCCAGAAACTGCAAAAGGTCAGAGTCTTaGAACTCGGATGTCTGGCCCCAGGGCAGGGTTAACAGAAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: EGAFSNPRNCKRSES*NSDVWPQGRVNRRK Trigger: CTTCCTTCTGTTAACCCTGCCCTGGGGCCAGACATCCGAGTTTCAAGACTCTGACCTTTTGCAGTTTCTGGGATTAGAGAAAGCGCCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR CAA 90 bp | CCAGCAAAGATGTATAATAAGACCTTGTTTCAAACAAGAACAAGAAGCCCAGCTGAACTGGAGCTGACCTaGAGGCCCAGGGACAGACCG | + |
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Preference number: 5 (lower is better) Translates to: PAKMYNKTLFQTRTRSPAELELT*RPRDRP Trigger: CGGTCTGTCCCTGGGCCTCAAGGTCAGCTCCAGTTC...AGCTGGGCTTCTTGTTCTTGTTTGAAACAAGGTCTTATTATACATCTTTGCTGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR CAA 90 bp | AGCATAAGCCAAAGGTGGGGTGGTAGTTTTATTAAAGGATTTACCCTAAGCACAACAGCCTTGGGGACCTaGGGGTCAGCCATATGCATC | + |
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Preference number: 5 (lower is better) Translates to: SISQRWGGSFIKGFTLSTTALGT*GSAICI Trigger: GATGCATATGGCTGACCCCAAGGTCCCCAAGGCTGT...TGTGCTTAGGGTAAATCCTTTAATAAAACTACCACCCCACCTTTGGCTTATGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS TCA 90 bp | CAGCCTTGGGGACCTTGGGGTCAGCCATATGCATCAGAGCCTGCATaGAAGCATAATTGGAACTATTTAAATACGTGGTCATTGAGAAGG | + |
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Preference number: 5 (lower is better) Translates to: QPWGPWGQPYASEPA*KHNWNYLNTWSLRR Trigger: CCTTCTCAATGACCACGTATTTAAATAGTTCCAATTATGCTTTCATGCAGGCTCTGATGCATATGGCTGACCCCAAGGTCCCCAAGGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR CAA 90 bp | GGTTCCTGCATGTACACCGTGCACTTACACAAGCACCCACACATAAAACAAACAGAGACAGGAGCCATCTaGGAAAGGTTTCTGTGTATT | + |
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Preference number: 5 (lower is better) Translates to: GSCMYTVHLHKHPHIKQTETGAI*ERFLCI Trigger: AATACACAGAAACCTTTCCAAGATGGCTCCTGTCTC...TGTTTGTTTTATGTGTGGGTGCTTGTGTAAGTGCACGGTGTACATGCAGGAACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS-3UTR CAA 90 bp | GCTCACCAAGGGGTCCATAGTCATACACAAATGTGTGTAATTGTGGGGCTCATGGAGTATCTGTCCTCTTaGACCAGAATCTCTAAGTGT | + |
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Preference number: 5 (lower is better) Translates to: AHQGVHSHTQMCVIVGLMEYLSS*TRISKC Trigger: ACACTTAGAGATTCTGGTCAAAGAGGACAGATACTC...CATGAGCCCCACAATTACACACATTTGTGTATGACTATGGACCCCTTGGTGAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS TCA 72 bp | ACCTTAGGGTGGGATCGCCCCCACACGCCCCGGTCCTaGACCACAGACAGAGCAACCACCAGCTCTGGTCGC | + |
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Preference number: 6 (lower is better) Translates to: TLGWDRPHTPRS*TTDRATTSSGR Trigger: GCGACCAGAGCTGGTGGTTGCTCTGTCTGTGGTTCAGGACCGGGGCGTGTGGGGGCGATCCCACCCTAAGGT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS TCA 72 bp | AGGCCCCACTGGCTGCAGCGGCTTCTCGAGCCCGGATaGTTTTCCTTAAGACGCGAGGCACAGGTTGGAACC | + |
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Preference number: 6 (lower is better) Translates to: RPHWLQRLLEPG*FSLRREAQVGT Trigger: GGTTCCAACCTGTGCCTCGCGTCTTAAGGAAAATCATCCGGGCTCGAGAAGCCGCTGCAGCCAGTGGGGCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS CCA 72 bp | TGTTTAGGATTGAGGGTTACCACCAGCAGCGAGGCATaGAGAGAGCGGAGCAGCCGGTCACAGGGGTTCTCG | + |
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Preference number: 6 (lower is better) Translates to: CLGLRVTTSSEA*RERSSRSQGFS Trigger: CGAGAACCCCTGTGACCGGCTGCTCCGCTCTCTCCATGCCTCGCTGCTGGTGGTAACCCTCAATCCTAAACA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS CCA 72 bp | CAACCACCAGCTCTGGTCGCAGGTTATAGTAGGACCTaGGCCCCAAGTCTAGAGTCAGCTGGGCCATGGTCA | + |
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Preference number: 6 (lower is better) Translates to: QPPALVAGYSRT*APSLESAGPWS Trigger: TGACCATGGCCCAGCTGACTCTAGACTTGGGGCCCAGGTCCTACTATAACCTGCGACCAGAGCTGGTGGTTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS CAA 90 bp | GCTCCAATCCTTAAGCGCACCCTGCAGGTTGAACTGGAGCTGACCTaGAGGCCCAGGGACAGACCGCAGAAAAAGCAATCTGCCCACCTT | + |
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Preference number: 6 (lower is better) Translates to: APILKRTLQVELELT*RPRDRPQKKQSAHL Trigger: AAGGTGGGCAGATTGCTTTTTCTGCGGTCTGTCCCTGGGCCTCAAGGTCAGCTCCAGTTCAACCTGCAGGGTGCGCTTAAGGATTGGAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS CCA 72 bp | GCTGATGACGGTGGCAGAAGTTCCTACAGAAACCCTTaGGGACAGAGATGGCCGCCCTCCTTTTTCTGGAAG | + |
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Preference number: 6 (lower is better) Translates to: ADDGGRSSYRNP*GQRWPPSFFWK Trigger: CTTCCAGAAAAAGGAGGGCGGCCATCTCTGTCCCCAAGGGTTTCTGTAGGAACTTCTGCCACCGTCATCAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS CAA 72 bp | CTTAAGCGCACCCTGCAGGTTGAACTGGAGCTGACCTaGAGGCCCAGGGACAGACCGCAGAAAAAGCAATCT | + |
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Preference number: 6 (lower is better) Translates to: LKRTLQVELELT*RPRDRPQKKQS Trigger: AGATTGCTTTTTCTGCGGTCTGTCCCTGGGCCTCAAGGTCAGCTCCAGTTCAACCTGCAGGGTGCGCTTAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS CAA 90 bp | TCTTTGACCAGAATCTCTAAGTGTAAGTCCAAGTTCTTCAGTCGGTaGCTGCTCCAATCCTTAAGCGCACCCTGCAGGTTGAACTGGAGC | + |
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Preference number: 6 (lower is better) Translates to: SLTRISKCKSKFFSR*LLQSLSAPCRLNWS Trigger: GCTCCAGTTCAACCTGCAGGGTGCGCTTAAGGATTGGAGCAGCAACCGACTGAAGAACTTGGACTTACACTTAGAGATTCTGGTCAAAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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| CDS TCA 72 bp | ACTCATCGACTACCATGTCTTCATAATGTCGGAGAATaGCGTTCTTATCACTATCCTGATAGAGCATGGAGA | + |
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Preference number: 6 (lower is better) Translates to: THRLPCLHNVGE*RSYHYPDRAWR Trigger: TCTCCATGCTCTATCAGGATAGTGATAAGAACGTCATTCTCCGACATTATGAAGACATGGTAGTCGATGAGT 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032211.5 |
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