RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GDA (Mus musculus)

Ensembl gene IDs: ENSMUSG00000058624

Ensembl transcript IDs: ENSMUST00000087600.10, ENSMUST00000121725.8, ENSMUST00000237823.2

Found 211 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGCCCAATGGGAGGCACTGTCATGAAATTACAATGCTCCCAGACTaGAGTGGAGAAGCAGCGCACTCCCTTCAAACAATTTACCAAGTG +
Preference number: 1 (lower is better)
Translates to: QPNGRHCHEITMLPD*SGEAAHSLQTIYQV
Trigger: CACTTGGTAAATTGTTTGAAGGGAGTGCGCTGCTTCTCCACTCCAGTCTGGGAGCATTGTAATTTCATGACAGTGCCTCCCATTGGGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR CCA 90 bp ACTGGAGTGGAGAAGCAGCGCACTCCCTTCAAACAATTTACCAAGTaGGCACTGGAAGGAGACACAGGAACAGAAGTCATCCAAAGAACA +
Preference number: 1 (lower is better)
Translates to: TGVEKQRTPFKQFTK*ALEGDTGTEVIQRT
Trigger: TGTTCTTTGGATGACTTCTGTTCCTGTGTCTCCTTCCAGTGCCCACTTGGTAAATTGTTTGAAGGGAGTGCGCTGCTTCTCCACTCCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR CCA 90 bp ATATGCACACTGATGGAACGGGTACAATGTGCATCCCAGTGTGCCTaGAAGGCTTCTCATGTGTCTGCTTCCAAAGGGAAAGAGCTTAAA +
Preference number: 1 (lower is better)
Translates to: ICTLMERVQCASQCA*KASHVSASKGKELK
Trigger: TTTAAGCTCTTTCCCTTTGGAAGCAGACACATGAGAAGCCTTCCAGGCACACTGGGATGCACATTGTACCCGTTCCATCAGTGTGCATAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR CCA 90 bp AGAACATATTGCCAGATCTGGCACTCATGTTGCCTCTGTTTGCTTTaGGGGATATTTGAGGGCATACCTCAAAATCAGCAAAGCAATGAA +
Preference number: 1 (lower is better)
Translates to: RTYCQIWHSCCLCLL*GIFEGIPQNQQSNE
Trigger: TTCATTGCTTTGCTGATTTTGAGGTATGCCCTCAAATATCCCCCAAAGCAAACAGAGGCAACATGAGTGCCAGATCTGGCAATATGTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR GCA 90 bp CCTTTCATTTGTCTTGAAATGTTTTTCACTAAAGAAGCAAAGAAATaGAGTGTTCACAGGATTCATTTAGAAAGGCCCCCTCCTGGCATA +
Preference number: 1 (lower is better)
Translates to: PFICLEMFFTKEAKK*SVHRIHLERPPPGI
Trigger: TATGCCAGGAGGGGGCCTTTCTAAATGAATCCTGTGAACACTGCATTTCTTTGCTTCTTTAGTGAAAAACATTTCAAGACAAATGAAAGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR TCA 90 bp TTTATTAGAAGTAATTCAACTGGCAGCACATTATCAGGACTAATCTaGATCTCAACAGGATGGTGTTACATTACCACTGCTATTCCTGCT +
Preference number: 1 (lower is better)
Translates to: FIRSNSTGSTLSGLI*ISTGWCYITTAIPA
Trigger: AGCAGGAATAGCAGTGGTAATGTAACACCATCCTGTTGAGATTCAGATTAGTCCTGATAATGTGCTGCCAGTTGAATTACTTCTAATAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
3UTR TCA 90 bp CTAAGAGACTTTAAATCTTTAATACTCAACTTCTGCCGAACACTTTaGAGCATAGAACTATATTTGAAAAGCGTGTGGCATTCAGGTTCT +
Preference number: 1 (lower is better)
Translates to: LRDFKSLILNFCRTL*SIELYLKSVWHSGS
Trigger: AGAACCTGAATGCCACACGCTTTTCAAATATAGTTCTATGCTTCAAAGTGTTCGGCAGAAGTTGAGTATTAAAGATTTAAAGTCTCTTAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR-3UTR CCA 90 bp ATGCTGGACATGCAGACTAAAGCCAGGGGTTGGATTTACTCACCGATATCCCACACAATGCTCCCAGACTaGAGTGGAGAAGCAGCGCAC +
Preference number: 2 (lower is better)
Translates to: MLDMQTKARGWIYSPISHTMLPD*SGEAAH
Trigger: GTGCGCTGCTTCTCCACTCCAGTCTGGGAGCATTGT...GTGGGATATCGGTGAGTAAATCCAACCCCTGGCTTTAGTCTGCATGTCCAGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
3UTR-3UTR GCA 90 bp ATGCTGGACATGCAGACTAAAGCCAGGGGTTGGATTTACTCACCGATATCCCACCCTGTTCCTGGCCCTTaGTTGTTTATAGGAGGTGGA +
Preference number: 2 (lower is better)
Translates to: MLDMQTKARGWIYSPISHPVPGP*LFIGGG
Trigger: TCCACCTCCTATAAACAAGCAAGGGCCAGGAACAGG...GTGGGATATCGGTGAGTAAATCCAACCCCTGGCTTTAGTCTGCATGTCCAGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
3UTR CAA 90 bp AAATGCACACCCTTCAAGAGGACAAGTGTGGGGTCTGTAAACCCTTaGGCAAGAGTCAAAACAGACAGCCTAAACAGTTGCCAGCCTCAG +
Preference number: 2 (lower is better)
Translates to: KCTPFKRTSVGSVNP*ARVKTDSLNSCQPQ
Trigger: CTGAGGCTGGCAACTGTTTAGGCTGTCTGTTTTGACTCTTGCCAAAGGGTTTACAGACCCCACACTTGTCCTCTTGAAGGGTGTGCATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
3UTR-3UTR CCA 90 bp TCTGTGCGAGCACAATGCAAATCTAAACAGCCCAATGGGAGGCACTGTCATGAATTACCAAGTGGGCACTaGAAGGAGACACAGGAACAG +
Preference number: 2 (lower is better)
Translates to: SVRAQCKSKQPNGRHCHELPSGH*KETQEQ
Trigger: CTGTTCCTGTGTCTCCTTCCAGTGCCCACTTGGTAA...TTCATGACAGTGCCTCCCATTGGGCTGTTTAGATTTGCATTGTGCTCGCACAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR-3UTR CCA 90 bp AAACAAACACACACAGAGCTCTTTCAGTATACTGGCCTTGCAGAGCCTTATCCAACAATGCTCCCAGACTaGAGTGGAGAAGCAGCGCAC +
Preference number: 2 (lower is better)
Translates to: KQTHTELFQYTGLAEPYPTMLPD*SGEAAH
Trigger: GTGCGCTGCTTCTCCACTCCAGTCTGGGAGCATTGT...TGGATAAGGCTCTGCAAGGCCAGTATACTGAAAGAGCTCTGTGTGTGTTTGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR-3UTR CCA 90 bp AACAGAAGCAACTGGAACACCTCACAGCCAGGAATCAAGATGACTTTGAAGTACACAATGCTCCCAGACTaGAGTGGAGAAGCAGCGCAC +
Preference number: 2 (lower is better)
Translates to: NRSNWNTSQPGIKMTLKYTMLPD*SGEAAH
Trigger: GTGCGCTGCTTCTCCACTCCAGTCTGGGAGCATTGT...GTACTTCAAAGTCATCTTGATTCCTGGCTGTGAGGTGTTCCAGTTGCTTCTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR-3UTR CCA 90 bp ATGCTGGACATGCAGACTAAAGCCAGGGGTTGGATTTACTCACCGATATCCCACGCTCTTTCAGTATACTaGCCTTGCAGAGCCTTATCC +
Preference number: 2 (lower is better)
Translates to: MLDMQTKARGWIYSPISHALSVY*PCRALS
Trigger: GGATAAGGCTCTGCAAGGCCAGTATACTGAAAGAGC...GTGGGATATCGGTGAGTAAATCCAACCCCTGGCTTTAGTCTGCATGTCCAGCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
3UTR-3UTR CCA 90 bp AAAAGCGTGTGGCATTCAGGTTCTGACATTCATCCCAAGAAGGGAAAGCATAACTTTCTGATTGGTCCCTaGGCACAAGGAAGATGGCGG +
Preference number: 2 (lower is better)
Translates to: KSVWHSGSDIHPKKGKHNFLIGP*AQGRWR
Trigger: CCGCCATCTTCCTTGTGCCCAGGGACCAATCAGAAA...GTTATGCTTTCCCTTCTTGGGATGAATGTCAGAACCTGAATGCCACACGCTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR-3UTR TCA 90 bp ATGCTGGACATGCAGACTAAAGCCAGGGGTTGGATTTACTCACCGATATCCCACTGTAAATATACTTTCTaGTTGGTCCCTGGGCACAAG +
Preference number: 2 (lower is better)
Translates to: MLDMQTKARGWIYSPISHCKYTF*LVPGHK
Trigger: CTTGTGCCCAGGGACCAATCAGAAAGTATATTTACA...GTGGGATATCGGTGAGTAAATCCAACCCCTGGCTTTAGTCTGCATGTCCAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
3UTR-3UTR TCA 90 bp AAACAAACACACACAGAGCTCTTTCAGTATACTGGCCTTGCAGAGCCTTATCCATGGGAGGCACTGTCATaGAATTACAATGCTCCCAGA +
Preference number: 2 (lower is better)
Translates to: KQTHTELFQYTGLAEPYPWEALS*NYNAPR
Trigger: TCTGGGAGCATTGTAATTTCATGACAGTGCCTCCCA...TGGATAAGGCTCTGCAAGGCCAGTATACTGAAAGAGCTCTGTGTGTGTTTGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR-3UTR TCA 90 bp ATGCTGGACATGCAGACTAAAGCCAGGGGTTGGATTTACTCACCGATATCCCACTCCAAGCACAACCAATaGCTTTTCCAATGTCTTTTC +
Preference number: 2 (lower is better)
Translates to: MLDMQTKARGWIYSPISHSKHNQ*LFQCLF
Trigger: GAAAAGACATTGGAAAAGTCATTGGTTGTGCTTGGA...GTGGGATATCGGTGAGTAAATCCAACCCCTGGCTTTAGTCTGCATGTCCAGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
3UTR-3UTR TCA 90 bp TATGGAATAGGCAGGACAACCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTACTTCCCCGATTTATaGAAACTCCAGTCTACAGAG +
Preference number: 2 (lower is better)
Translates to: YGIGRTTFLPSFLPSFLPYFPDL*KLQSTE
Trigger: CTCTGTAGACTGGAGTTTTCATAAATCGGGGAAGTA...AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGTTGTCCTGCCTATTCCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR-3UTR GCA 90 bp TATGGAATAGGCAGGACAACCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCAGTATACTGGCCTTaGAGAGCCTTATCCATAATG +
Preference number: 2 (lower is better)
Translates to: YGIGRTTFLPSFLPSFLPSVYWP*RALSIM
Trigger: CATTATGGATAAGGCTCTGCAAGGCCAGTATACTGA...AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGTTGTCCTGCCTATTCCATA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR-3UTR CCA 90 bp ATCAGGACTAATCTGAATCTCAACAGGATGGTGTTACATTACCACTGCTATTCCAGCCTCAGAGAGAAATaGGAGAGGGGAATCTGGCAG +
Preference number: 2 (lower is better)
Translates to: IRTNLNLNRMVLHYHCYSSLREK*ERGIWQ
Trigger: CTGCCAGATTCCCCTCTCCCATTTCTCTCTGAGGCT...GGAATAGCAGTGGTAATGTAACACCATCCTGTTGAGATTCAGATTAGTCCTGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
3UTR-3UTR TCA 90 bp ATGCTGGACATGCAGACTAAAGCCAGGGGTTGGATTTACTCACCGATATCCCACTTCTGCCGAACACTTTaGAGCATAGAACTATATTTG +
Preference number: 2 (lower is better)
Translates to: MLDMQTKARGWIYSPISHFCRTL*SIELYL
Trigger: CAAATATAGTTCTATGCTTCAAAGTGTTCGGCAGAA...GTGGGATATCGGTGAGTAAATCCAACCCCTGGCTTTAGTCTGCATGTCCAGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
3UTR CAA 90 bp AGATTTAGAACATATTGCCAGATCTGGCACTCATGTTGCCTCTGTTaGCTTTGGGGGATATTTGAGGGCATACCTCAAAATCAGCAAAGC +
Preference number: 2 (lower is better)
Translates to: RFRTYCQIWHSCCLC*LWGIFEGIPQNQQS
Trigger: GCTTTGCTGATTTTGAGGTATGCCCTCAAATATCCCCCAAAGCAAACAGAGGCAACATGAGTGCCAGATCTGGCAATATGTTCTAAATCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR-3UTR GCA 90 bp ATCAGGACTAATCTGAATCTCAACAGGATGGTGTTACATTACCACTGCTATTCCGACAGCCTAAACAGTTaGCAGCCTCAGAGAGAAATG +
Preference number: 2 (lower is better)
Translates to: IRTNLNLNRMVLHYHCYSDSLNS*QPQREM
Trigger: CATTTCTCTCTGAGGCTGGCAACTGTTTAGGCTGTC...GGAATAGCAGTGGTAATGTAACACCATCCTGTTGAGATTCAGATTAGTCCTGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
3UTR-3UTR CCA 90 bp AACAGAAGCAACTGGAACACCTCACAGCCAGGAATCAAGATGACTTTGAAGTACAATATACTTTCTGATTaGTCCCTGGGCACAAGGAAG +
Preference number: 2 (lower is better)
Translates to: NRSNWNTSQPGIKMTLKYNILSD*SLGTRK
Trigger: CTTCCTTGTGCCCAGGGACCAATCAGAAAGTATATT...GTACTTCAAAGTCATCTTGATTCCTGGCTGTGAGGTGTTCCAGTTGCTTCTGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR-3UTR GCA 90 bp AAAAGCGTGTGGCATTCAGGTTCTGACATTCATCCCAAGAAGGGAAAGCATAACCCTCTCATAAAAATCTaGTCATTGGTCCATACTGGA +
Preference number: 2 (lower is better)
Translates to: KSVWHSGSDIHPKKGKHNPLIKI*SLVHTG
Trigger: TCCAGTATGGACCAATGAGCAGATTTTTATGAGAGG...GTTATGCTTTCCCTTCTTGGGATGAATGTCAGAACCTGAATGCCACACGCTTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR-3UTR GCA 90 bp AAACAAACACACACAGAGCTCTTTCAGTATACTGGCCTTGCAGAGCCTTATCCACCTCTCATAAAAATCTaGTCATTGGTCCATACTGGA +
Preference number: 2 (lower is better)
Translates to: KQTHTELFQYTGLAEPYPPLIKI*SLVHTG
Trigger: TCCAGTATGGACCAATGAGCAGATTTTTATGAGAGG...TGGATAAGGCTCTGCAAGGCCAGTATACTGAAAGAGCTCTGTGTGTGTTTGTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR-3UTR GCA 90 bp GAGGGGAATCTGGCAGCTCATTTTGATATTTCTGATGTGCTAGCAATGCTGGACCAACTATTTATGCCTTaGGGCTATGTGAATACTATC +
Preference number: 2 (lower is better)
Translates to: EGNLAAHFDISDVLAMLDQLFMP*GYVNTI
Trigger: GATAGTATTCACATAGCCGCAAGGCATAAATAGTTG...GTCCAGCATTGCTAGCACATCAGAAATATCAAAATGAGCTGCCAGATTCCCCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
3UTR-3UTR CCA 90 bp ACTCTTTTCAAATATTTGAATAGTCCAGCAACAGCAACCTTAAAAGATGTCCACTTTCTGATTGGTCCCTaGGCACAAGGAAGATGGCGG +
Preference number: 2 (lower is better)
Translates to: TLFKYLNSPATATLKDVHFLIGP*AQGRWR
Trigger: CCGCCATCTTCCTTGTGCCCAGGGACCAATCAGAAA...GTGGACATCTTTTAAGGTTGCTGTTGCTGGACTATTCAAATATTTGAAAAGAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR-3UTR GCA 90 bp CTTTCTTCTACAGAGAGCAAACCATTCAAACATAAAGTGACAACTGGGATAGGCTCTGTGCGAGCACAATaGAAATCTAAACAGCCCAAT +
Preference number: 2 (lower is better)
Translates to: LSSTESKPFKHKVTTGIGSVRAQ*KSKQPN
Trigger: ATTGGGCTGTTTAGATTTGCATTGTGCTCGCACAGA...GCCTATCCCAGTTGTCACTTTATGTTTGAATGGTTTGCTCTCTGTAGAAGAAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR-3UTR GCA 90 bp CTCTCCCCTGTCTGCTTCTTCCCACGACATTATAAAGTGTATTGTGCAAAATCAGTGAGAACTAACTACTaGCTAATGGGTTTCTCTGTT +
Preference number: 2 (lower is better)
Translates to: LSPVCFFPRHYKVYCAKSVRTNY*LMGFSV
Trigger: AACAGAGAAACCCATTAGGCAGTAGTTAGTTCTCAC...TGATTTTGCACAATACACTTTATAATGTCGTGGGAAGAAGCAGACAGGGGAGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR CAA 90 bp ACAGAGAGCAAACCATTCAAACATAAAGTGACAACTGGGATAGGCTaGGAACAGTGCCTATCCATAATTAGGAAAGTCAACCTACGTTAT +
Preference number: 2 (lower is better)
Translates to: TESKPFKHKVTTGIG*EQCLSIIRKVNLRY
Trigger: ATAACGTAGGTTGACTTTCCTAATTATGGATAGGCACTGTTCCAAGCCTATCCCAGTTGTCACTTTATGTTTGAATGGTTTGCTCTCTGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR-3UTR TCA 90 bp TCTCTCTCTCTCTTTCTCTCTCAAAATAAAACAAAGTACGACCTAAATGTGTACTGGGAGGCACTGTCATaGAATTACAATGCTCCCAGA +
Preference number: 2 (lower is better)
Translates to: SLSLFLSQNKTKYDLNVYWEALS*NYNAPR
Trigger: TCTGGGAGCATTGTAATTTCATGACAGTGCCTCCCA...GTACACATTTAGGTCGTACTTTGTTTTATTTTGAGAGAGAAAGAGAGAGAGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
3UTR-3UTR CCA 90 bp CTTTCTTCTACAGAGAGCAAACCATTCAAACATAAAGTGACAACTGGGATAGGCAATAAAACCTGTTCCTaGCCCTTGCTTGTTTATAGG +
Preference number: 2 (lower is better)
Translates to: LSSTESKPFKHKVTTGIGNKTCS*PLLVYR
Trigger: CCTATAAACAAGCAAGGGCCAGGAACAGGTTTTATT...GCCTATCCCAGTTGTCACTTTATGTTTGAATGGTTTGCTCTCTGTAGAAGAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR-3UTR TCA 90 bp TATATGTTAATAAAACCTGTTCCTGGCCCTTGCTTGTTTATAGGAGGTGGAATTTACTTCCCCGATTTATaGAAACTCCAGTCTACAGAG +
Preference number: 2 (lower is better)
Translates to: YMLIKPVPGPCLFIGGGIYFPDL*KLQSTE
Trigger: CTCTGTAGACTGGAGTTTTCATAAATCGGGGAAGTA...AATTCCACCTCCTATAAACAAGCAAGGGCCAGGAACAGGTTTTATTAACATATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
3UTR-3UTR CCA 90 bp CACAAAGTGCAAATGTCCATAGACAATGTCGATCTAGAAGCATGTTTTAAATCCAAACAATTTACCAAGTaGGCACTGGAAGGAGACACA +
Preference number: 2 (lower is better)
Translates to: HKVQMSIDNVDLEACFKSKQFTK*ALEGDT
Trigger: TGTGTCTCCTTCCAGTGCCCACTTGGTAAATTGTTT...GGATTTAAAACATGCTTCTAGATCGACATTGTCTATGGACATTTGCACTTTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR-3UTR TCA 90 bp AATACTCAACTTCTGCCGAACACTTTGAAGCATAGAACTATATTTGAAAAGCGTTGTAAATATACTTTCTaGTTGGTCCCTGGGCACAAG +
Preference number: 2 (lower is better)
Translates to: NTQLLPNTLKHRTIFEKRCKYTF*LVPGHK
Trigger: CTTGTGCCCAGGGACCAATCAGAAAGTATATTTACA...ACGCTTTTCAAATATAGTTCTATGCTTCAAAGTGTTCGGCAGAAGTTGAGTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR-3UTR TCA 90 bp ATAGACAATGTCGATCTAGAAGCATGTTTTAAATCCAGTAGGTTCTCCTTTTACTGTAAATATACTTTCTaGTTGGTCCCTGGGCACAAG +
Preference number: 2 (lower is better)
Translates to: IDNVDLEACFKSSRFSFYCKYTF*LVPGHK
Trigger: CTTGTGCCCAGGGACCAATCAGAAAGTATATTTACA...GTAAAAGGAGAACCTACTGGATTTAAAACATGCTTCTAGATCGACATTGTCTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR-3UTR GCA 90 bp TCTCCTTTTACGAGACTGTTCTCTATATTAAATTTCCAAGCACAACCAATGACTTCTGTGCGAGCACAATaGAAATCTAAACAGCCCAAT +
Preference number: 2 (lower is better)
Translates to: SPFTRLFSILNFQAQPMTSVRAQ*KSKQPN
Trigger: ATTGGGCTGTTTAGATTTGCATTGTGCTCGCACAGA...AGTCATTGGTTGTGCTTGGAAATTTAATATAGAGAACAGTCTCGTAAAAGGAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR-3UTR GCA 90 bp CACAAAGTGCAAATGTCCATAGACAATGTCGATCTAGAAGCATGTTTTAAATCCTCAATGTCTAGCTTGTaGCCTCTCATAAAAATCTGC +
Preference number: 2 (lower is better)
Translates to: HKVQMSIDNVDLEACFKSSMSSL*PLIKIC
Trigger: GCAGATTTTTATGAGAGGGCACAAGCTAGACATTGA...GGATTTAAAACATGCTTCTAGATCGACATTGTCTATGGACATTTGCACTTTGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR-3UTR CCA 90 bp ATAGACAATGTCGATCTAGAAGCATGTTTTAAATCCAGTAGGTTCTCCTTTTACAATATACTTTCTGATTaGTCCCTGGGCACAAGGAAG +
Preference number: 2 (lower is better)
Translates to: IDNVDLEACFKSSRFSFYNILSD*SLGTRK
Trigger: CTTCCTTGTGCCCAGGGACCAATCAGAAAGTATATT...GTAAAAGGAGAACCTACTGGATTTAAAACATGCTTCTAGATCGACATTGTCTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR-3UTR CCA 90 bp ACTCTTTTCAAATATTTGAATAGTCCAGCAACAGCAACCTTAAAAGATGTCCACAAACAATTTACCAAGTaGGCACTGGAAGGAGACACA +
Preference number: 2 (lower is better)
Translates to: TLFKYLNSPATATLKDVHKQFTK*ALEGDT
Trigger: TGTGTCTCCTTCCAGTGCCCACTTGGTAAATTGTTT...GTGGACATCTTTTAAGGTTGCTGTTGCTGGACTATTCAAATATTTGAAAAGAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR-3UTR CCA 90 bp AATACTCAACTTCTGCCGAACACTTTGAAGCATAGAACTATATTTGAAAAGCGTAAACAATTTACCAAGTaGGCACTGGAAGGAGACACA +
Preference number: 2 (lower is better)
Translates to: NTQLLPNTLKHRTIFEKRKQFTK*ALEGDT
Trigger: TGTGTCTCCTTCCAGTGCCCACTTGGTAAATTGTTT...ACGCTTTTCAAATATAGTTCTATGCTTCAAAGTGTTCGGCAGAAGTTGAGTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR-3UTR CCA 90 bp TATATGTTAATAAAACCTGTTCCTGGCCCTTGCTTGTTTATAGGAGGTGGAATTTTAGGGACTTGCACTTaGCTTTTAAGTTCTAGCACA +
Preference number: 2 (lower is better)
Translates to: YMLIKPVPGPCLFIGGGILGTCT*LLSSST
Trigger: TGTGCTAGAACTTAAAAGCCAAGTGCAAGTCCCTAA...AATTCCACCTCCTATAAACAAGCAAGGGCCAGGAACAGGTTTTATTAACATATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
3UTR-3UTR CCA 90 bp AATACTCAACTTCTGCCGAACACTTTGAAGCATAGAACTATATTTGAAAAGCGTCTCATTGGTCCATACTaGAGTTTCCTAATTTTCTTA +
Preference number: 2 (lower is better)
Translates to: NTQLLPNTLKHRTIFEKRLIGPY*SFLIFL
Trigger: TAAGAAAATTAGGAAACTCCAGTATGGACCAATGAG...ACGCTTTTCAAATATAGTTCTATGCTTCAAAGTGTTCGGCAGAAGTTGAGTATT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR-3UTR CCA 90 bp TCTCTCTCTCTCTTTCTCTCTCAAAATAAAACAAAGTACGACCTAAATGTGTACCTCATTGGTCCATACTaGAGTTTCCTAATTTTCTTA +
Preference number: 2 (lower is better)
Translates to: SLSLFLSQNKTKYDLNVYLIGPY*SFLIFL
Trigger: TAAGAAAATTAGGAAACTCCAGTATGGACCAATGAG...GTACACATTTAGGTCGTACTTTGTTTTATTTTGAGAGAGAAAGAGAGAGAGAGA
34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
3UTR GCA 72 bp AACAGCCCAATGGGAGGCACTGTCATGAAATTACAATaGTCCCAGACTGGAGTGGAGAAGCAGCGCACTCCC +
Preference number: 3 (lower is better)
Translates to: NSPMGGTVMKLQ*SQTGVEKQRTP
Trigger: GGGAGTGCGCTGCTTCTCCACTCCAGTCTGGGAGCATTGTAATTTCATGACAGTGCCTCCCATTGGGCTGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR GCA 72 bp CACACTGATGGAACGGGTACAATGTGCATCCCAGTGTaGCTGGAAGGCTTCTCATGTGTCTGCTTCCAAAGG +
Preference number: 3 (lower is better)
Translates to: HTDGTGTMCIPV*LEGFSCVCFQR
Trigger: CCTTTGGAAGCAGACACATGAGAAGCCTTCCAGGCACACTGGGATGCACATTGTACCCGTTCCATCAGTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR GCA 72 bp TTGCATTTCACTAAACATGGACTAGGCCCACAACACTaGATCTCAGTGCTGGAGATGGGCAGGAAGGTGGGG +
Preference number: 3 (lower is better)
Translates to: LHFTKHGLGPQH*ISVLEMGRKVG
Trigger: CCCCACCTTCCTGCCCATCTCCAGCACTGAGATGCAGTGTTGTGGGCCTAGTCCATGTTTAGTGAAATGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR CCA 72 bp GAGAAGCAGCGCACTCCCTTCAAACAATTTACCAAGTaGGCACTGGAAGGAGACACAGGAACAGAAGTCATC +
Preference number: 3 (lower is better)
Translates to: EKQRTPFKQFTK*ALEGDTGTEVI
Trigger: GATGACTTCTGTTCCTGTGTCTCCTTCCAGTGCCCACTTGGTAAATTGTTTGAAGGGAGTGCGCTGCTTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR CCA 72 bp ATATACTTTCTGATTGGTCCCTGGGCACAAGGAAGATaGCGGAATCATGTCTTCCCAGGAGAATGTCGCAGA +
Preference number: 3 (lower is better)
Translates to: IYFLIGPWAQGR*RNHVFPGECRR
Trigger: TCTGCGACATTCTCCTGGGAAGACATGATTCCGCCATCTTCCTTGTGCCCAGGGACCAATCAGAAAGTATAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR-3UTR CAA 90 bp GAGGGGAATCTGGCAGCTCATTTTGATATTTCTGATGTGCTAGCAATGCTGGACTGGGTAGATTCAGCATaGCAAAGAACCCTGTCCCCT +
Preference number: 3 (lower is better)
Translates to: EGNLAAHFDISDVLAMLDWVDSA*QRTLSP
Trigger: AGGGGACAGGGTTCTTTGCAATGCTGAATCTACCCA...GTCCAGCATTGCTAGCACATCAGAAATATCAAAATGAGCTGCCAGATTCCCCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
3UTR CCA 72 bp GATAGGAGGGTGAACTGTACAGCAATGATTATGCGTTaGGTAGATTCAGCATTGCAAAGAACCCTGTCCCCT +
Preference number: 3 (lower is better)
Translates to: DRRVNCTAMIMR*VDSALQRTLSP
Trigger: AGGGGACAGGGTTCTTTGCAATGCTGAATCTACCCAACGCATAATCATTGCTGTACAGTTCACCCTCCTATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR CCA 72 bp TGCCAGATCTGGCACTCATGTTGCCTCTGTTTGCTTTaGGGGATATTTGAGGGCATACCTCAAAATCAGCAA +
Preference number: 3 (lower is better)
Translates to: CQIWHSCCLCLL*GIFEGIPQNQQ
Trigger: TTGCTGATTTTGAGGTATGCCCTCAAATATCCCCCAAAGCAAACAGAGGCAACATGAGTGCCAGATCTGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR CCA 72 bp GATTCATTTAGAAAGGCCCCCTCCTGGCATACCCTCTaGGACTGTGAAGTCTTTGACAGTGTAAGTAAAGAA +
Preference number: 3 (lower is better)
Translates to: DSFRKAPSWHTL*DCEVFDSVSKE
Trigger: TTCTTTACTTACACTGTCAAAGACTTCACAGTCCCAGAGGGTATGCCAGGAGGGGGCCTTTCTAAATGAATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR-3UTR CAA 90 bp AACAGAAGCAACTGGAACACCTCACAGCCAGGAATCAAGATGACTTTGAAGTACACTATTGGAAGCGCATaGCCAGCTGTTAACAATGTC +
Preference number: 3 (lower is better)
Translates to: NRSNWNTSQPGIKMTLKYTIGSA*PAVNNV
Trigger: GACATTGTTAACAGCTGGCAATGCGCTTCCAATAGT...GTACTTCAAAGTCATCTTGATTCCTGGCTGTGAGGTGTTCCAGTTGCTTCTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR-3UTR CAA 90 bp TATGGAATAGGCAGGACAACCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTATAAAAATCTGCTCATaGGTCCATACTGGAGTTTCC +
Preference number: 3 (lower is better)
Translates to: YGIGRTTFLPSFLPSFLPIKICS*VHTGVS
Trigger: GGAAACTCCAGTATGGACCAATGAGCAGATTTTTAT...AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGTTGTCCTGCCTATTCCATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR GCA 72 bp GCCTTGCAGAGCCTTATCCATAATGCTTTAGGGACTTaGACTTGGCTTTTAAGTTCTAGCACATTGATAGGA +
Preference number: 3 (lower is better)
Translates to: ALQSLIHNALGT*TWLLSSSTLIG
Trigger: TCCTATCAATGTGCTAGAACTTAAAAGCCAAGTGCAAGTCCCTAAAGCATTATGGATAAGGCTCTGCAAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR GCA 72 bp AGATTTAGAACATATTGCCAGATCTGGCACTCATGTTaGCTCTGTTTGCTTTGGGGGATATTTGAGGGCATA +
Preference number: 3 (lower is better)
Translates to: RFRTYCQIWHSC*LCLLWGIFEGI
Trigger: TATGCCCTCAAATATCCCCCAAAGCAAACAGAGGCAACATGAGTGCCAGATCTGGCAATATGTTCTAAATCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR GCA 72 bp TATCAAGAGTTTTCTCTCAGTGACCTCTCCCCTGTCTaGTTCTTCCCACGACATTATAAAGTGTATTGTGCA +
Preference number: 3 (lower is better)
Translates to: YQEFSLSDLSPV*FFPRHYKVYCA
Trigger: TGCACAATACACTTTATAATGTCGTGGGAAGAAGCAGACAGGGGAGAGGTCACTGAGAGAAAACTCTTGATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR-3UTR CAA 90 bp ATCAGGACTAATCTGAATCTCAACAGGATGGTGTTACATTACCACTGCTATTCCACTATTGGAAGCGCATaGCCAGCTGTTAACAATGTC +
Preference number: 3 (lower is better)
Translates to: IRTNLNLNRMVLHYHCYSTIGSA*PAVNNV
Trigger: GACATTGTTAACAGCTGGCAATGCGCTTCCAATAGT...GGAATAGCAGTGGTAATGTAACACCATCCTGTTGAGATTCAGATTAGTCCTGAT
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
3UTR-3UTR CAA 90 bp TCTCTCTCTCTCTTTCTCTCTCAAAATAAAACAAAGTACGACCTAAATGTGTACTGGGTAGATTCAGCATaGCAAAGAACCCTGTCCCCT +
Preference number: 3 (lower is better)
Translates to: SLSLFLSQNKTKYDLNVYWVDSA*QRTLSP
Trigger: AGGGGACAGGGTTCTTTGCAATGCTGAATCTACCCA...GTACACATTTAGGTCGTACTTTGTTTTATTTTGAGAGAGAAAGAGAGAGAGAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
3UTR-3UTR CAA 90 bp ACTCTTTTCAAATATTTGAATAGTCCAGCAACAGCAACCTTAAAAGATGTCCACAGACAGCCTAAACAGTaGCCAGCCTCAGAGAGAAAT +
Preference number: 3 (lower is better)
Translates to: TLFKYLNSPATATLKDVHRQPKQ*PASERN
Trigger: ATTTCTCTCTGAGGCTGGCAACTGTTTAGGCTGTCT...GTGGACATCTTTTAAGGTTGCTGTTGCTGGACTATTCAAATATTTGAAAAGAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR TCA 72 bp AGTAATTCAACTGGCAGCACATTATCAGGACTAATCTaGATCTCAACAGGATGGTGTTACATTACCACTGCT +
Preference number: 3 (lower is better)
Translates to: SNSTGSTLSGLI*ISTGWCYITTA
Trigger: AGCAGTGGTAATGTAACACCATCCTGTTGAGATTCAGATTAGTCCTGATAATGTGCTGCCAGTTGAATTACT
40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
3UTR CCA 72 bp GTGCCCTCTCATAAAAATCTGCTCATTGGTCCATACTaGAGTTTCCTAATTTTCTTAGTCATTAGCACAGAG +
Preference number: 3 (lower is better)
Translates to: VPSHKNLLIGPY*SFLIFLVISTE
Trigger: CTCTGTGCTAATGACTAAGAAAATTAGGAAACTCCAGTATGGACCAATGAGCAGATTTTTATGAGAGGGCAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR-3UTR CAA 90 bp TCTCCTTTTACGAGACTGTTCTCTATATTAAATTTCCAAGCACAACCAATGACTACTATTGGAAGCGCATaGCCAGCTGTTAACAATGTC +
Preference number: 3 (lower is better)
Translates to: SPFTRLFSILNFQAQPMTTIGSA*PAVNNV
Trigger: GACATTGTTAACAGCTGGCAATGCGCTTCCAATAGT...AGTCATTGGTTGTGCTTGGAAATTTAATATAGAGAACAGTCTCGTAAAAGGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR-3UTR CAA 90 bp TTTGACAGTGTAAGTAAAGAACCAGGTAAGATAACACAACAGAGGAATCCAGCCAGCATAGAACTATATTaGAAAAGCGTGTGGCATTCA +
Preference number: 3 (lower is better)
Translates to: FDSVSKEPGKITQQRNPASIELY*KSVWHS
Trigger: TGAATGCCACACGCTTTTCAAATATAGTTCTATGCT...GGCTGGATTCCTCTGTTGTGTTATCTTACCTGGTTCTTTACTTACACTGTCAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR TCA 72 bp CTGCCACGTGGTTATGACCTGGTTTTAGTTCTAATATaGGAAGGGACACCATATACGTTAGAAAAGCTAAAA +
Preference number: 3 (lower is better)
Translates to: LPRGYDLVLVLI*EGTPYTLEKLK
Trigger: TTTTAGCTTTTCTAACGTATATGGTGTCCCTTCTCATATTAGAACTAAAACCAGGTCATAACCACGTGGCAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
3UTR TCA 72 bp AATCAGAAGGTTAGCAATAATGTAAGGGACACCTTCTaGTGGGCTTTTTGGGTAAGAAATAGACAGATAAGT +
Preference number: 3 (lower is better)
Translates to: NQKVSNNVRDTF*WAFWVRNRQIS
Trigger: ACTTATCTGTCTATTTCTTACCCAAAAAGCCCATCAGAAGGTGTCCCTTACATTATTGCTAACCTTCTGATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR GCA 72 bp AAGAACTGTGTGTTCTTAGATGTGAGAACTAACTACTaGCTAATGGGTTTCTCTGTTATAAGATACAATGGA +
Preference number: 3 (lower is better)
Translates to: KNCVFLDVRTNY*LMGFSVIRYNG
Trigger: TCCATTGTATCTTATAACAGAGAAACCCATTAGGCAGTAGTTAGTTCTCACATCTAAGAACACACAGTTCTT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR TCA 90 bp CTGATTGGTCCCTGGGCACAAGGAAGATGGCGGAATCATGTCTTCCCAGGAGAACCAGCAAAGGCATACTaGGGGGCATGGATGTGGGTA +
Preference number: 4 (lower is better)
Translates to: LIGPWAQGRWRNHVFPGEPAKAY*GAWMWV
Trigger: TACCCACATCCATGCCCCTCAGTATGCCTTTGCTGG...TTCTCCTGGGAAGACATGATTCCGCCATCTTCCTTGTGCCCAGGGACCAATCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR TCA 90 bp TCCCTGGGCACAAGGAAGATGGCGGAATCATGTCTTCCCAGGAGAATGTCGCAGATCTCTCTGTCTCCTTaGCTGACTCCTCGGTGGTCT +
Preference number: 4 (lower is better)
Translates to: SLGTRKMAESCLPRRMSQISLSP*LTPRWS
Trigger: AGACCACCGAGGAGTCAGTCAAGGAGACAGAGAGAT...CTGCGACATTCTCCTGGGAAGACATGATTCCGCCATCTTCCTTGTGCCCAGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR TCA 90 bp AATCTAAACAGCCCAATGGGAGGCACTGTCATGAAATTACAATGCTCCCAGACTCTCACGCCGAGGAGGTaGTCGCGAAGCACCTCCATG +
Preference number: 4 (lower is better)
Translates to: NLNSPMGGTVMKLQCSQTLTPRR*SRSTSM
Trigger: CATGGAGGTGCTTCGCGATCACCTCCTCGGCGTGAG...AGTCTGGGAGCATTGTAATTTCATGACAGTGCCTCCCATTGGGCTGTTTAGATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS-3UTR TCA 90 bp TCCCTGGGCACAAGGAAGATGGCGGAATCATGTCTTCCCAGGAGAATGTCGCAGATCAATGGGAGAGTCTaGTGCTCTGGGGTTGATCAA +
Preference number: 4 (lower is better)
Translates to: SLGTRKMAESCLPRRMSQINGRV*CSGVDQ
Trigger: TTGATCAACCCCAGAGCATCAGACTCTCCCATTGAT...CTGCGACATTCTCCTGGGAAGACATGATTCCGCCATCTTCCTTGTGCCCAGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp ATGCTGGACATGCAGACTAAAGCCAGGGGTTGGATTTACTCACCGATATCCCACAGCAAGCCGTGGTGGTaGCGTTCTTCAGTGTTCTCC +
Preference number: 4 (lower is better)
Translates to: MLDMQTKARGWIYSPISHSKPWW*RSSVFS
Trigger: GGAGAACACTGAAGAACGGCACCACCACGGCTTGCT...GTGGGATATCGGTGAGTAAATCCAACCCCTGGCTTTAGTCTGCATGTCCAGCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp CTGATTGGTCCCTGGGCACAAGGAAGATGGCGGAATCATGTCTTCCCAGGAGAAGGGTCTTGGCGATGTTaGCAAGTTCACTCATCAGAG +
Preference number: 4 (lower is better)
Translates to: LIGPWAQGRWRNHVFPGEGSWRC*QVHSSE
Trigger: CTCTGATGAGTGAACTTGGCAACATCGCCAAGACCC...TTCTCCTGGGAAGACATGATTCCGCCATCTTCCTTGTGCCCAGGGACCAATCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp GTCCCTGGGCACAAGGAAGATGGCGGAATCATGTCTTCCCAGGAGAATGTCGCAAGAGTTGGGACAATGTaGAATGGATGCTCCTCGTTC +
Preference number: 4 (lower is better)
Translates to: VPGHKEDGGIMSSQENVARVGTM*NGCSSF
Trigger: GAACGAGGAGCATCCATTGCACATTGTCCCAACTCT...TGCGACATTCTCCTGGGAAGACATGATTCCGCCATCTTCCTTGTGCCCAGGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CCA 90 bp TGGGCACTGGAAGGAGACACAGGAACAGAAGTCATCCAAAGAACACGGTACTTTCAGGTCCAGGTGGAGTaGACGAAAGTCCCTCGGAAG +
Preference number: 4 (lower is better)
Translates to: WALEGDTGTEVIQRTRYFQVQVE*TKVPRK
Trigger: CTTCCGAGGGACTTTCGTCCACTCCACCTGGACCTG...AAAGTACCGTGTTCTTTGGATGACTTCTGTTCCTGTGTCTCCTTCCAGTGCCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS-3UTR CCA 90 bp GTCCCTGGGCACAAGGAAGATGGCGGAATCATGTCTTCCCAGGAGAATGTCGCAAGAAAGGGTAAAGCGTaGGGTCACTATGGGTTTCAC +
Preference number: 4 (lower is better)
Translates to: VPGHKEDGGIMSSQENVARKGKA*GHYGFH
Trigger: GTGAAACCCATAGTGACCCCACGCTTTACCCTTTCT...TGCGACATTCTCCTGGGAAGACATGATTCCGCCATCTTCCTTGTGCCCAGGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR TCA 90 bp ATGCTGGACATGCAGACTAAAGCCAGGGGTTGGATTTACTCACCGATATCCCACCGCAAGGATCAGGGATaGGTCAGTGTGAATTGTTCC +
Preference number: 4 (lower is better)
Translates to: MLDMQTKARGWIYSPISHRKDQG*VSVNCS
Trigger: GGAACAATTCACACTGACTCATCCCTGATCCTTGCG...GTGGGATATCGGTGAGTAAATCCAACCCCTGGCTTTAGTCTGCATGTCCAGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp TCTGGCACTCATGTTGCCTCTGTTTGCTTTGGGGGATATTTGAGGGCATACCTCGGGTCTTGGCGATGTTaGCAAGTTCACTCATCAGAG +
Preference number: 4 (lower is better)
Translates to: SGTHVASVCFGGYLRAYLGSWRC*QVHSSE
Trigger: CTCTGATGAGTGAACTTGGCAACATCGCCAAGACCC...GAGGTATGCCCTCAAATATCCCCCAAAGCAAACAGAGGCAACATGAGTGCCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS-3UTR CCA 90 bp TCCCTGGGCACAAGGAAGATGGCGGAATCATGTCTTCCCAGGAGAATGTCGCAGTCACTTATATGGCTCTaGATGTACAGATCATGGGTC +
Preference number: 4 (lower is better)
Translates to: SLGTRKMAESCLPRRMSQSLIWL*MYRSWV
Trigger: GACCCATGATCTGTACATCCAGAGCCATATAAGTGA...CTGCGACATTCTCCTGGGAAGACATGATTCCGCCATCTTCCTTGTGCCCAGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR TCA 90 bp AATCTAAACAGCCCAATGGGAGGCACTGTCATGAAATTACAATGCTCCCAGACTCCAGCAAAGGCATACTaGGGGGCATGGATGTGGGTA +
Preference number: 4 (lower is better)
Translates to: NLNSPMGGTVMKLQCSQTPAKAY*GAWMWV
Trigger: TACCCACATCCATGCCCCTCAGTATGCCTTTGCTGG...AGTCTGGGAGCATTGTAATTTCATGACAGTGCCTCCCATTGGGCTGTTTAGATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR TCA 90 bp CTGATTGGTCCCTGGGCACAAGGAAGATGGCGGAATCATGTCTTCCCAGGAGAACTTTTGCAGCATTTCTaGCACAAATCTCTCTGTCTC +
Preference number: 4 (lower is better)
Translates to: LIGPWAQGRWRNHVFPGELLQHF*HKSLCL
Trigger: GAGACAGAGAGATTTGTGTCAGAAATGCTGCAAAAG...TTCTCCTGGGAAGACATGATTCCGCCATCTTCCTTGTGCCCAGGGACCAATCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp AAAAGCGTGTGGCATTCAGGTTCTGACATTCATCCCAAGAAGGGAAAGCATAACAGCAAGCCGTGGTGGTaGCGTTCTTCAGTGTTCTCC +
Preference number: 4 (lower is better)
Translates to: KSVWHSGSDIHPKKGKHNSKPWW*RSSVFS
Trigger: GGAGAACACTGAAGAACGGCACCACCACGGCTTGCT...GTTATGCTTTCCCTTCTTGGGATGAATGTCAGAACCTGAATGCCACACGCTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp CTGATTGGTCCCTGGGCACAAGGAAGATGGCGGAATCATGTCTTCCCAGGAGAATACTTTGCCCACAAATaGTCGCTGCCCAAATTTATC +
Preference number: 4 (lower is better)
Translates to: LIGPWAQGRWRNHVFPGEYFAHK*SLPKFI
Trigger: GATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTA...TTCTCCTGGGAAGACATGATTCCGCCATCTTCCTTGTGCCCAGGGACCAATCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp TGGGCACTGGAAGGAGACACAGGAACAGAAGTCATCCAAAGAACACGGTACTTTGGGTCTTGGCGATGTTaGCAAGTTCACTCATCAGAG +
Preference number: 4 (lower is better)
Translates to: WALEGDTGTEVIQRTRYFGSWRC*QVHSSE
Trigger: CTCTGATGAGTGAACTTGGCAACATCGCCAAGACCC...AAAGTACCGTGTTCTTTGGATGACTTCTGTTCCTGTGTCTCCTTCCAGTGCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CCA 90 bp TTTGACAGTGTAAGTAAAGAACCAGGTAAGATAACACAACAGAGGAATCCAGCCTGGGGCAGGTCCAGGTaGAGTGGACGAAAGTCCCTC +
Preference number: 4 (lower is better)
Translates to: FDSVSKEPGKITQQRNPAWGRSR*SGRKSL
Trigger: GAGGGACTTTCGTCCACTCCACCTGGACCTGCCCCA...GGCTGGATTCCTCTGTTGTGTTATCTTACCTGGTTCTTTACTTACACTGTCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS-3UTR CCA 90 bp TCTGGCACTCATGTTGCCTCTGTTTGCTTTGGGGGATATTTGAGGGCATACCTCAGAAAGGGTAAAGCGTaGGGTCACTATGGGTTTCAC +
Preference number: 4 (lower is better)
Translates to: SGTHVASVCFGGYLRAYLRKGKA*GHYGFH
Trigger: GTGAAACCCATAGTGACCCCACGCTTTACCCTTTCT...GAGGTATGCCCTCAAATATCCCCCAAAGCAAACAGAGGCAACATGAGTGCCAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR CAA 72 bp CCCTTCAAGAGGACAAGTGTGGGGTCTGTAAACCCTTaGGCAAGAGTCAAAACAGACAGCCTAAACAGTTGC +
Preference number: 4 (lower is better)
Translates to: PFKRTSVGSVNP*ARVKTDSLNSC
Trigger: GCAACTGTTTAGGCTGTCTGTTTTGACTCTTGCCAAAGGGTTTACAGACCCCACACTTGTCCTCTTGAAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR TCA 90 bp CGAGCACAATGCAAATCTAAACAGCCCAATGGGAGGCACTGTCATGAAATTACAATCTCTCTGTCTCCTTaGCTGACTCCTCGGTGGTCT +
Preference number: 4 (lower is better)
Translates to: RAQCKSKQPNGRHCHEITISLSP*LTPRWS
Trigger: AGACCACCGAGGAGTCAGTCAAGGAGACAGAGAGAT...TGTAATTTCATGACAGTGCCTCCCATTGGGCTGTTTAGATTTGCATTGTGCTCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR TCA 90 bp TATGGAATAGGCAGGACAACCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTCTGATGCTCTGGGGTTaGTCAAGAGGGCATCAAATT +
Preference number: 4 (lower is better)
Translates to: YGIGRTTFLPSFLPSFLPLMLWG*SRGHQI
Trigger: AATTTGATGCCCTCTTGATCAACCCCAGAGCATCAG...AGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGTTGTCCTGCCTATTCCATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS-3UTR GCA 90 bp TGGGCACTGGAAGGAGACACAGGAACAGAAGTCATCCAAAGAACACGGTACTTTAGAGTTGGGACAATGTaGAATGGATGCTCCTCGTTC +
Preference number: 4 (lower is better)
Translates to: WALEGDTGTEVIQRTRYFRVGTM*NGCSSF
Trigger: GAACGAGGAGCATCCATTGCACATTGTCCCAACTCT...AAAGTACCGTGTTCTTTGGATGACTTCTGTTCCTGTGTCTCCTTCCAGTGCCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CCA 90 bp GTCCCTGGGCACAAGGAAGATGGCGGAATCATGTCTTCCCAGGAGAATGTCGCACGATTTTCACTTATATaGCTCTGGATGTACAGATCA +
Preference number: 4 (lower is better)
Translates to: VPGHKEDGGIMSSQENVARFSLI*LWMYRS
Trigger: TGATCTGTACATCCAGAGCCATATAAGTGAAAATCG...TGCGACATTCTCCTGGGAAGACATGATTCCGCCATCTTCCTTGTGCCCAGGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR TCA 90 bp TCTGGCACTCATGTTGCCTCTGTTTGCTTTGGGGGATATTTGAGGGCATACCTCCTTTTGCAGCATTTCTaGCACAAATCTCTCTGTCTC +
Preference number: 4 (lower is better)
Translates to: SGTHVASVCFGGYLRAYLLLQHF*HKSLCL
Trigger: GAGACAGAGAGATTTGTGTCAGAAATGCTGCAAAAG...GAGGTATGCCCTCAAATATCCCCCAAAGCAAACAGAGGCAACATGAGTGCCAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS-3UTR GCA 90 bp ATGCTGGACATGCAGACTAAAGCCAGGGGTTGGATTTACTCACCGATATCCCACAAGGTAGCAGCCATGTaGCATTACTGTCTTGTTTGT +
Preference number: 4 (lower is better)
Translates to: MLDMQTKARGWIYSPISHKVAAM*HYCLVC
Trigger: ACAAACAAGACAGTAATGGCACATGGCTGCTACCTT...GTGGGATATCGGTGAGTAAATCCAACCCCTGGCTTTAGTCTGCATGTCCAGCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp TCTGGCACTCATGTTGCCTCTGTTTGCTTTGGGGGATATTTGAGGGCATACCTCATTGGAAACCATGACTaGTCTTCTGATGGCATCAAG +
Preference number: 4 (lower is better)
Translates to: SGTHVASVCFGGYLRAYLIGNHD*SSDGIK
Trigger: CTTGATGCCATCAGAAGAGCAGTCATGGTTTCCAAT...GAGGTATGCCCTCAAATATCCCCCAAAGCAAACAGAGGCAACATGAGTGCCAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS-3UTR CCA 90 bp ATAGACAATGTCGATCTAGAAGCATGTTTTAAATCCAGTAGGTTCTCCTTTTACCGCGAAGCACCTCCATaGGGCAGGTCCAGGTGGAGT +
Preference number: 4 (lower is better)
Translates to: IDNVDLEACFKSSRFSFYREAPP*GRSRWS
Trigger: ACTCCACCTGGACCTGCCCCATGGAGGTGCTTCGCG...GTAAAAGGAGAACCTACTGGATTTAAAACATGCTTCTAGATCGACATTGTCTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS-3UTR CCA 90 bp TCCCTGGGCACAAGGAAGATGGCGGAATCATGTCTTCCCAGGAGAATGTCGCAGGGAACCTTTGTTCTGTaGGAAATGTATACTTATTCA +
Preference number: 4 (lower is better)
Translates to: SLGTRKMAESCLPRRMSQGTFVL*EMYTYS
Trigger: TGAATAAGTATACATTTCCCACAGAACAAAGGTTCC...CTGCGACATTCTCCTGGGAAGACATGATTCCGCCATCTTCCTTGTGCCCAGGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR TCA 90 bp CAGTACATTAACAATAAGCAAAATCATACAGATACCGAGGGGAAGGATGTCCCCCGCAAGGATCAGGGATaGGTCAGTGTGAATTGTTCC +
Preference number: 4 (lower is better)
Translates to: QYINNKQNHTDTEGKDVPRKDQG*VSVNCS
Trigger: GGAACAATTCACACTGACTCATCCCTGATCCTTGCG...GGGGACATCCTTCCCCTCGGTATCTGTATGATTTTGCTTATTGTTAATGTACTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS-3UTR TCA 90 bp AAACAAACACACACAGAGCTCTTTCAGTATACTGGCCTTGCAGAGCCTTATCCACTGATGCTCTGGGGTTaGTCAAGAGGGCATCAAATT +
Preference number: 4 (lower is better)
Translates to: KQTHTELFQYTGLAEPYPLMLWG*SRGHQI
Trigger: AATTTGATGCCCTCTTGATCAACCCCAGAGCATCAG...TGGATAAGGCTCTGCAAGGCCAGTATACTGAAAGAGCTCTGTGTGTGTTTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR TCA 90 bp AAACAAACACACACAGAGCTCTTTCAGTATACTGGCCTTGCAGAGCCTTATCCAATCAATGGGAGAGTCTaGTGCTCTGGGGTTGATCAA +
Preference number: 4 (lower is better)
Translates to: KQTHTELFQYTGLAEPYPINGRV*CSGVDQ
Trigger: TTGATCAACCCCAGAGCATCAGACTCTCCCATTGAT...TGGATAAGGCTCTGCAAGGCCAGTATACTGAAAGAGCTCTGTGTGTGTTTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp TCTGTGCGAGCACAATGCAAATCTAAACAGCCCAATGGGAGGCACTGTCATGAAATTGGAAACCATGACTaGTCTTCTGATGGCATCAAG +
Preference number: 4 (lower is better)
Translates to: SVRAQCKSKQPNGRHCHEIGNHD*SSDGIK
Trigger: CTTGATGCCATCAGAAGAGCAGTCATGGTTTCCAAT...TTCATGACAGTGCCTCCCATTGGGCTGTTTAGATTTGCATTGTGCTCGCACAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR CAA 72 bp GGCACTCATGTTGCCTCTGTTTGCTTTGGGGGATATTaGAGGGCATACCTCAAAATCAGCAAAGCAATGAAG +
Preference number: 4 (lower is better)
Translates to: GTHVASVCFGGY*RAYLKISKAMK
Trigger: CTTCATTGCTTTGCTGATTTTGAGGTATGCCCTCAAATATCCCCCAAAGCAAACAGAGGCAACATGAGTGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS-3UTR TCA 90 bp AGTAGGTTCTCCTTTTACGAGACTGTTCTCTATATTAAATTTCCAAGCACAACCCCAGCAAAGGCATACTaGGGGGCATGGATGTGGGTA +
Preference number: 4 (lower is better)
Translates to: SRFSFYETVLYIKFPSTTPAKAY*GAWMWV
Trigger: TACCCACATCCATGCCCCTCAGTATGCCTTTGCTGG...GGTTGTGCTTGGAAATTTAATATAGAGAACAGTCTCGTAAAAGGAGAACCTACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp GAGGGGAATCTGGCAGCTCATTTTGATATTTCTGATGTGCTAGCAATGCTGGACAAGGTAGCAGCCATGTaGCATTACTGTCTTGTTTGT +
Preference number: 4 (lower is better)
Translates to: EGNLAAHFDISDVLAMLDKVAAM*HYCLVC
Trigger: ACAAACAAGACAGTAATGGCACATGGCTGCTACCTT...GTCCAGCATTGCTAGCACATCAGAAATATCAAAATGAGCTGCCAGATTCCCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp TCTGTGCGAGCACAATGCAAATCTAAACAGCCCAATGGGAGGCACTGTCATGAAGGGCATCAAATTCCTTaGCAACTTCAAAGTTTCCAA +
Preference number: 4 (lower is better)
Translates to: SVRAQCKSKQPNGRHCHEGHQIP*QLQSFQ
Trigger: TTGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCC...TTCATGACAGTGCCTCCCATTGGGCTGTTTAGATTTGCATTGTGCTCGCACAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR CAA 72 bp ACATATTGCCAGATCTGGCACTCATGTTGCCTCTGTTaGCTTTGGGGGATATTTGAGGGCATACCTCAAAAT +
Preference number: 4 (lower is better)
Translates to: TYCQIWHSCCLC*LWGIFEGIPQN
Trigger: ATTTTGAGGTATGCCCTCAAATATCCCCCAAAGCAAACAGAGGCAACATGAGTGCCAGATCTGGCAATATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS-3UTR TCA 90 bp GAGGGGAATCTGGCAGCTCATTTTGATATTTCTGATGTGCTAGCAATGCTGGACGCCAGTTTTTCTTGCTaGGATGATTCTTCTAGAAAC +
Preference number: 4 (lower is better)
Translates to: EGNLAAHFDISDVLAMLDASFSC*DDSSRN
Trigger: GTTTCTAGAAGAATCATCTCAGCAAGAAAAACTGGC...GTCCAGCATTGCTAGCACATCAGAAATATCAAAATGAGCTGCCAGATTCCCCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR TCA 90 bp AGTAGGTTCTCCTTTTACGAGACTGTTCTCTATATTAAATTTCCAAGCACAACCATCTCTCTGTCTCCTTaGCTGACTCCTCGGTGGTCT +
Preference number: 4 (lower is better)
Translates to: SRFSFYETVLYIKFPSTTISLSP*LTPRWS
Trigger: AGACCACCGAGGAGTCAGTCAAGGAGACAGAGAGAT...GGTTGTGCTTGGAAATTTAATATAGAGAACAGTCTCGTAAAAGGAGAACCTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp AATACTCAACTTCTGCCGAACACTTTGAAGCATAGAACTATATTTGAAAAGCGTAGCAAGCCGTGGTGGTaGCGTTCTTCAGTGTTCTCC +
Preference number: 4 (lower is better)
Translates to: NTQLLPNTLKHRTIFEKRSKPWW*RSSVFS
Trigger: GGAGAACACTGAAGAACGGCACCACCACGGCTTGCT...ACGCTTTTCAAATATAGTTCTATGCTTCAAAGTGTTCGGCAGAAGTTGAGTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp AATCTAAACAGCCCAATGGGAGGCACTGTCATGAAATTACAATGCTCCCAGACTAAGGTAGCAGCCATGTaGCATTACTGTCTTGTTTGT +
Preference number: 4 (lower is better)
Translates to: NLNSPMGGTVMKLQCSQTKVAAM*HYCLVC
Trigger: ACAAACAAGACAGTAATGGCACATGGCTGCTACCTT...AGTCTGGGAGCATTGTAATTTCATGACAGTGCCTCCCATTGGGCTGTTTAGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp AAAAGCGTGTGGCATTCAGGTTCTGACATTCATCCCAAGAAGGGAAAGCATAACATTGGAAACCATGACTaGTCTTCTGATGGCATCAAG +
Preference number: 4 (lower is better)
Translates to: KSVWHSGSDIHPKKGKHNIGNHD*SSDGIK
Trigger: CTTGATGCCATCAGAAGAGCAGTCATGGTTTCCAAT...GTTATGCTTTCCCTTCTTGGGATGAATGTCAGAACCTGAATGCCACACGCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CCA 90 bp AAACAAACACACACAGAGCTCTTTCAGTATACTGGCCTTGCAGAGCCTTATCCATCACTTATATGGCTCTaGATGTACAGATCATGGGTC +
Preference number: 4 (lower is better)
Translates to: KQTHTELFQYTGLAEPYPSLIWL*MYRSWV
Trigger: GACCCATGATCTGTACATCCAGAGCCATATAAGTGA...TGGATAAGGCTCTGCAAGGCCAGTATACTGAAAGAGCTCTGTGTGTGTTTGTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR TCA 90 bp TCTCCTTTTACGAGACTGTTCTCTATATTAAATTTCCAAGCACAACCAATGACTCAACAAGGCCTGGCATaGAGAACTCATGGTGGCTCA +
Preference number: 4 (lower is better)
Translates to: SPFTRLFSILNFQAQPMTQQGLA*RTHGGS
Trigger: TGAGCCACCATGAGTTCTTCATGCCAGGCCTTGTTG...AGTCATTGGTTGTGCTTGGAAATTTAATATAGAGAACAGTCTCGTAAAAGGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR TCA 90 bp TCTCTCTCTCTCTTTCTCTCTCAAAATAAAACAAAGTACGACCTAAATGTGTACCAACAAGGCCTGGCATaGAGAACTCATGGTGGCTCA +
Preference number: 4 (lower is better)
Translates to: SLSLFLSQNKTKYDLNVYQQGLA*RTHGGS
Trigger: TGAGCCACCATGAGTTCTTCATGCCAGGCCTTGTTG...GTACACATTTAGGTCGTACTTTGTTTTATTTTGAGAGAGAAAGAGAGAGAGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR CCA 90 bp CAGTACATTAACAATAAGCAAAATCATACAGATACCGAGGGGAAGGATGTCCCCTTCTCTGATCTCACATaGTTTGAAGCACCACTCCTT +
Preference number: 4 (lower is better)
Translates to: QYINNKQNHTDTEGKDVPFSDLT*FEAPLL
Trigger: AAGGAGTGGTGCTTCAAACCATGTGAGATCAGAGAA...GGGGACATCCTTCCCCTCGGTATCTGTATGATTTTGCTTATTGTTAATGTACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS-3UTR CCA 90 bp GAGGGGAATCTGGCAGCTCATTTTGATATTTCTGATGTGCTAGCAATGCTGGACCGATTTTCACTTATATaGCTCTGGATGTACAGATCA +
Preference number: 4 (lower is better)
Translates to: EGNLAAHFDISDVLAMLDRFSLI*LWMYRS
Trigger: TGATCTGTACATCCAGAGCCATATAAGTGAAAATCG...GTCCAGCATTGCTAGCACATCAGAAATATCAAAATGAGCTGCCAGATTCCCCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR TCA 90 bp ATAGACAATGTCGATCTAGAAGCATGTTTTAAATCCAGTAGGTTCTCCTTTTACCGCAAGGATCAGGGATaGGTCAGTGTGAATTGTTCC +
Preference number: 4 (lower is better)
Translates to: IDNVDLEACFKSSRFSFYRKDQG*VSVNCS
Trigger: GGAACAATTCACACTGACTCATCCCTGATCCTTGCG...GTAAAAGGAGAACCTACTGGATTTAAAACATGCTTCTAGATCGACATTGTCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR TCA 90 bp ATCAGGACTAATCTGAATCTCAACAGGATGGTGTTACATTACCACTGCTATTCCCTTTTGCAGCATTTCTaGCACAAATCTCTCTGTCTC +
Preference number: 4 (lower is better)
Translates to: IRTNLNLNRMVLHYHCYSLLQHF*HKSLCL
Trigger: GAGACAGAGAGATTTGTGTCAGAAATGCTGCAAAAG...GGAATAGCAGTGGTAATGTAACACCATCCTGTTGAGATTCAGATTAGTCCTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR TCA 90 bp CACAAAGTGCAAATGTCCATAGACAATGTCGATCTAGAAGCATGTTTTAAATCCCTGATGCTCTGGGGTTaGTCAAGAGGGCATCAAATT +
Preference number: 4 (lower is better)
Translates to: HKVQMSIDNVDLEACFKSLMLWG*SRGHQI
Trigger: AATTTGATGCCCTCTTGATCAACCCCAGAGCATCAG...GGATTTAAAACATGCTTCTAGATCGACATTGTCTATGGACATTTGCACTTTGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CCA 90 bp AGTAGGTTCTCCTTTTACGAGACTGTTCTCTATATTAAATTTCCAAGCACAACCAGAAAGGGTAAAGCGTaGGGTCACTATGGGTTTCAC +
Preference number: 4 (lower is better)
Translates to: SRFSFYETVLYIKFPSTTRKGKA*GHYGFH
Trigger: GTGAAACCCATAGTGACCCCACGCTTTACCCTTTCT...GGTTGTGCTTGGAAATTTAATATAGAGAACAGTCTCGTAAAAGGAGAACCTACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp ATCAGGACTAATCTGAATCTCAACAGGATGGTGTTACATTACCACTGCTATTCCCCCACAAATGCTCGCTaGCCAAATTTATCTGTAATT +
Preference number: 4 (lower is better)
Translates to: IRTNLNLNRMVLHYHCYSPTNAR*PNLSVI
Trigger: AATTACAGATAAATTTGGGCAGCGAGCATTTGTGGG...GGAATAGCAGTGGTAATGTAACACCATCCTGTTGAGATTCAGATTAGTCCTGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp AAAAGCGTGTGGCATTCAGGTTCTGACATTCATCCCAAGAAGGGAAAGCATAACTATCATTCAAATCCATaGATACTTTGCCCACAAATG +
Preference number: 4 (lower is better)
Translates to: KSVWHSGSDIHPKKGKHNYHSNP*ILCPQM
Trigger: CATTTGTGGGCAAAGTATGCATGGATTTGAATGATA...GTTATGCTTTCCCTTCTTGGGATGAATGTCAGAACCTGAATGCCACACGCTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp AATCTAAACAGCCCAATGGGAGGCACTGTCATGAAATTACAATGCTCCCAGACTTATCATTCAAATCCATaGATACTTTGCCCACAAATG +
Preference number: 4 (lower is better)
Translates to: NLNSPMGGTVMKLQCSQTYHSNP*ILCPQM
Trigger: CATTTGTGGGCAAAGTATGCATGGATTTGAATGATA...AGTCTGGGAGCATTGTAATTTCATGACAGTGCCTCCCATTGGGCTGTTTAGATT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp TCTCTCTCTCTCTTTCTCTCTCAAAATAAAACAAAGTACGACCTAAATGTGTACAGAGTTGGGACAATGTaGAATGGATGCTCCTCGTTC +
Preference number: 4 (lower is better)
Translates to: SLSLFLSQNKTKYDLNVYRVGTM*NGCSSF
Trigger: GAACGAGGAGCATCCATTGCACATTGTCCCAACTCT...GTACACATTTAGGTCGTACTTTGTTTTATTTTGAGAGAGAAAGAGAGAGAGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp ATCAGGACTAATCTGAATCTCAACAGGATGGTGTTACATTACCACTGCTATTCCGGGCATCAAATTCCTTaGCAACTTCAAAGTTTCCAA +
Preference number: 4 (lower is better)
Translates to: IRTNLNLNRMVLHYHCYSGHQIP*QLQSFQ
Trigger: TTGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCC...GGAATAGCAGTGGTAATGTAACACCATCCTGTTGAGATTCAGATTAGTCCTGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR CCA 90 bp ATAGACAATGTCGATCTAGAAGCATGTTTTAAATCCAGTAGGTTCTCCTTTTACGGTATCAACAAGGCCTaGCATGAAGAACTCATGGTG +
Preference number: 4 (lower is better)
Translates to: IDNVDLEACFKSSRFSFYGINKA*HEELMV
Trigger: CACCATGAGTTCTTCATGCCAGGCCTTGTTGATACC...GTAAAAGGAGAACCTACTGGATTTAAAACATGCTTCTAGATCGACATTGTCTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR CCA 90 bp AATACTCAACTTCTGCCGAACACTTTGAAGCATAGAACTATATTTGAAAAGCGTGGTATCAACAAGGCCTaGCATGAAGAACTCATGGTG +
Preference number: 4 (lower is better)
Translates to: NTQLLPNTLKHRTIFEKRGINKA*HEELMV
Trigger: CACCATGAGTTCTTCATGCCAGGCCTTGTTGATACC...ACGCTTTTCAAATATAGTTCTATGCTTCAAAGTGTTCGGCAGAAGTTGAGTATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp CAGTACATTAACAATAAGCAAAATCATACAGATACCGAGGGGAAGGATGTCCCCTATCATTCAAATCCATaGATACTTTGCCCACAAATG +
Preference number: 4 (lower is better)
Translates to: QYINNKQNHTDTEGKDVPYHSNP*ILCPQM
Trigger: CATTTGTGGGCAAAGTATGCATGGATTTGAATGATA...GGGGACATCCTTCCCCTCGGTATCTGTATGATTTTGCTTATTGTTAATGTACTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
3UTR CAA 72 bp AAACCATTCAAACATAAAGTGACAACTGGGATAGGCTaGGAACAGTGCCTATCCATAATTAGGAAAGTCAAC +
Preference number: 4 (lower is better)
Translates to: KPFKHKVTTGIG*EQCLSIIRKVN
Trigger: GTTGACTTTCCTAATTATGGATAGGCACTGTTCCAAGCCTATCCCAGTTGTCACTTTATGTTTGAATGGTTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS-3UTR TCA 90 bp AGTAGGTTCTCCTTTTACGAGACTGTTCTCTATATTAAATTTCCAAGCACAACCGCCAGTTTTTCTTGCTaGGATGATTCTTCTAGAAAC +
Preference number: 4 (lower is better)
Translates to: SRFSFYETVLYIKFPSTTASFSC*DDSSRN
Trigger: GTTTCTAGAAGAATCATCTCAGCAAGAAAAACTGGC...GGTTGTGCTTGGAAATTTAATATAGAGAACAGTCTCGTAAAAGGAGAACCTACT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp ATAGACAATGTCGATCTAGAAGCATGTTTTAAATCCAGTAGGTTCTCCTTTTACTACTTTGCCCACAAATaGTCGCTGCCCAAATTTATC +
Preference number: 4 (lower is better)
Translates to: IDNVDLEACFKSSRFSFYYFAHK*SLPKFI
Trigger: GATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTA...GTAAAAGGAGAACCTACTGGATTTAAAACATGCTTCTAGATCGACATTGTCTAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp TCTCTCTCTCTCTTTCTCTCTCAAAATAAAACAAAGTACGACCTAAATGTGTACTACTTTGCCCACAAATaGTCGCTGCCCAAATTTATC +
Preference number: 4 (lower is better)
Translates to: SLSLFLSQNKTKYDLNVYYFAHK*SLPKFI
Trigger: GATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTA...GTACACATTTAGGTCGTACTTTGTTTTATTTTGAGAGAGAAAGAGAGAGAGAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR CCA 90 bp AATACTCAACTTCTGCCGAACACTTTGAAGCATAGAACTATATTTGAAAAGCGTTTCTCTGATCTCACATaGTTTGAAGCACCACTCCTT +
Preference number: 4 (lower is better)
Translates to: NTQLLPNTLKHRTIFEKRFSDLT*FEAPLL
Trigger: AAGGAGTGGTGCTTCAAACCATGTGAGATCAGAGAA...ACGCTTTTCAAATATAGTTCTATGCTTCAAAGTGTTCGGCAGAAGTTGAGTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp ATAGACAATGTCGATCTAGAAGCATGTTTTAAATCCAGTAGGTTCTCCTTTTACCCCACAAATGCTCGCTaGCCAAATTTATCTGTAATT +
Preference number: 4 (lower is better)
Translates to: IDNVDLEACFKSSRFSFYPTNAR*PNLSVI
Trigger: AATTACAGATAAATTTGGGCAGCGAGCATTTGTGGG...GTAAAAGGAGAACCTACTGGATTTAAAACATGCTTCTAGATCGACATTGTCTAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR GCA 90 bp AATACTCAACTTCTGCCGAACACTTTGAAGCATAGAACTATATTTGAAAAGCGTGGGCATCAAATTCCTTaGCAACTTCAAAGTTTCCAA +
Preference number: 4 (lower is better)
Translates to: NTQLLPNTLKHRTIFEKRGHQIP*QLQSFQ
Trigger: TTGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCC...ACGCTTTTCAAATATAGTTCTATGCTTCAAAGTGTTCGGCAGAAGTTGAGTATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CCA 90 bp CACAAAGTGCAAATGTCCATAGACAATGTCGATCTAGAAGCATGTTTTAAATCCCGATTTTCACTTATATaGCTCTGGATGTACAGATCA +
Preference number: 4 (lower is better)
Translates to: HKVQMSIDNVDLEACFKSRFSLI*LWMYRS
Trigger: TGATCTGTACATCCAGAGCCATATAAGTGAAAATCG...GGATTTAAAACATGCTTCTAGATCGACATTGTCTATGGACATTTGCACTTTGTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CCA 90 bp CACAAAGTGCAAATGTCCATAGACAATGTCGATCTAGAAGCATGTTTTAAATCCGGAACCTTTGTTCTGTaGGAAATGTATACTTATTCA +
Preference number: 4 (lower is better)
Translates to: HKVQMSIDNVDLEACFKSGTFVL*EMYTYS
Trigger: TGAATAAGTATACATTTCCCACAGAACAAAGGTTCC...GGATTTAAAACATGCTTCTAGATCGACATTGTCTATGGACATTTGCACTTTGTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
3UTR CAA 72 bp ACATTACCACTGCTATTCCTGCTTCCAGAATTACATTaGCCTATATTACTGCATGTGAGTCTTAAGTTTAAA +
Preference number: 4 (lower is better)
Translates to: TLPLLFLLPELH*PILLHVSLKFK
Trigger: TTTAAACTTAAGACTCACATGCAGTAATATAGGCAAATGTAATTCTGGAAGCAGGAATAGCAGTGGTAATGT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
3UTR CAA 72 bp TACCTGTTAACAGCTAAGATGACTCTTTTCAAATATTaGAATAGTCCAGCAACAGCAACCTTAAAAGATGTC +
Preference number: 4 (lower is better)
Translates to: YLLTAKMTLFKY*NSPATATLKDV
Trigger: GACATCTTTTAAGGTTGCTGTTGCTGGACTATTCAAATATTTGAAAAGAGTCATCTTAGCTGTTAACAGGTA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS-3UTR CCA 90 bp TCTCTCTCTCTCTTTCTCTCTCAAAATAAAACAAAGTACGACCTAAATGTGTACGGAACCTTTGTTCTGTaGGAAATGTATACTTATTCA +
Preference number: 4 (lower is better)
Translates to: SLSLFLSQNKTKYDLNVYGTFVL*EMYTYS
Trigger: TGAATAAGTATACATTTCCCACAGAACAAAGGTTCC...GTACACATTTAGGTCGTACTTTGTTTTATTTTGAGAGAGAAAGAGAGAGAGAGA
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS CCA 90 bp TGCCGCTGTCGCTCACGCCGAGGAGGTGATCGCGAAGCACCTCCATaGGGCAGGTCCAGGTGGAGTGGACGAAAGTCCCTCGGAAGACGA +
Preference number: 5 (lower is better)
Translates to: CRCRSRRGGDREAPP*GRSRWSGRKSLGRR
Trigger: TCGTCTTCCGAGGGACTTTCGTCCACTCCACCTGGACCTGCCCCATGGAGGTGCTTCGCGATCACCTCCTCGGCGTGAGCGACAGCGGCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS TCA 90 bp TCTTCTAGAAACACTATTTTGCCGCTGTCGCTCACGCCGAGGAGGTaGTCGCGAAGCACCTCCATGGGGCAGGTCCAGGTGGAGTGGACG +
Preference number: 5 (lower is better)
Translates to: SSRNTILPLSLTPRR*SRSTSMGQVQVEWT
Trigger: CGTCCACTCCACCTGGACCTGCCCCATGGAGGTGCTTCGCGATCACCTCCTCGGCGTGAGCGACAGCGGCAAAATAGTGTTTCTAGAAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS TCA 90 bp CACTCCAAAAGCGGCAGGTCAACGTTGCTTCCAGCAAAGGCATACTaGGGGGCATGGATGTGGGTATCAACAAGGCCTGGCATGAAGAAC +
Preference number: 5 (lower is better)
Translates to: HSKSGRSTLLPAKAY*GAWMWVSTRPGMKN
Trigger: GTTCTTCATGCCAGGCCTTGTTGATACCCACATCCATGCCCCTCAGTATGCCTTTGCTGGAAGCAACGTTGACCTGCCGCTTTTGGAGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp GTCCCTGGGCACAAGGAAGATGGCGGAATCATGTCTTCCCAGGAGAATGTCGCATGGGTCTTGGCGATGTaGCCAAGTTCACTCATCAGA +
Preference number: 5 (lower is better)
Translates to: VPGHKEDGGIMSSQENVAWVLAM*PSSLIR
Trigger: TCTGATGAGTGAACTTGGCAACATCGCCAAGACCCA...TGCGACATTCTCCTGGGAAGACATGATTCCGCCATCTTCCTTGTGCCCAGGGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp TGGGCACTGGAAGGAGACACAGGAACAGAAGTCATCCAAAGAACACGGTACTTTAATCTCTCTGTCTCCTaGACTGACTCCTCGGTGGTC +
Preference number: 5 (lower is better)
Translates to: WALEGDTGTEVIQRTRYFNLSVS*TDSSVV
Trigger: GACCACCGAGGAGTCAGTCAAGGAGACAGAGAGATT...AAAGTACCGTGTTCTTTGGATGACTTCTGTTCCTGTGTCTCCTTCCAGTGCCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp CTGATTGGTCCCTGGGCACAAGGAAGATGGCGGAATCATGTCTTCCCAGGAGAAAGCGACAGATTAGAGTaGGGACAATGTGCAATGGAT +
Preference number: 5 (lower is better)
Translates to: LIGPWAQGRWRNHVFPGESDRLE*GQCAMD
Trigger: ATCCATTGCACATTGTCCCAACTCTAATCTGTCGCT...TTCTCCTGGGAAGACATGATTCCGCCATCTTCCTTGTGCCCAGGGACCAATCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp GTCCCTGGGCACAAGGAAGATGGCGGAATCATGTCTTCCCAGGAGAATGTCGCAAGGGCATCAAATTCCTaGCCAACTTCAAAGTTTCCA +
Preference number: 5 (lower is better)
Translates to: VPGHKEDGGIMSSQENVARASNS*PTSKFP
Trigger: TGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCCT...TGCGACATTCTCCTGGGAAGACATGATTCCGCCATCTTCCTTGTGCCCAGGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS TCA 90 bp TGCTCGCTGCCCAAATTTATCTGTAATTTCCGCAAGGATCAGGGATaGGTCAGTGTGAATTGTTCCAAAGTAGCAAGCCGTGGTGGTGCC +
Preference number: 5 (lower is better)
Translates to: CSLPKFICNFRKDQG*VSVNCSKVASRGGA
Trigger: GGCACCACCACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAGATAAATTTGGGCAGCGAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS GCA 90 bp GAAATGTATACTTATTCAGCCACTCCAAAAGCGGCAGGTCAACGTTaGTTCCAGCAAAGGCATACTGAGGGGCATGGATGTGGGTATCAA +
Preference number: 5 (lower is better)
Translates to: EMYTYSATPKAAGQR*FQQRHTEGHGCGYQ
Trigger: TTGATACCCACATCCATGCCCCTCAGTATGCCTTTGCTGGAAGCAACGTTGACCTGCCGCTTTTGGAGTGGCTGAATAAGTATACATTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS CCA 90 bp GCCAAGTTCACTCATCAGAGTCTCCGTGCAAGAAAGGGTAAAGCGTaGGGTCACTATGGGTTTCACCCTTGGATAATTCTTTTGCAGCAT +
Preference number: 5 (lower is better)
Translates to: AKFTHQSLRARKGKA*GHYGFHPWIILLQH
Trigger: ATGCTGCAAAAGAATTATCCAAGGGTGAAACCCATAGTGACCCCACGCTTTACCCTTTCTTGCACGGAGACTCTGATGAGTGAACTTGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp AAACAAACACACACAGAGCTCTTTCAGTATACTGGCCTTGCAGAGCCTTATCCACTGATCTCACATGGTTaGAAGCACCACTCCTTGGCC +
Preference number: 5 (lower is better)
Translates to: KQTHTELFQYTGLAEPYPLISHG*KHHSLA
Trigger: GGCCAAGGAGTGGTGCTTCAAACCATGTGAGATCAG...TGGATAAGGCTCTGCAAGGCCAGTATACTGAAAGAGCTCTGTGTGTGTTTGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp AACAGAAGCAACTGGAACACCTCACAGCCAGGAATCAAGATGACTTTGAAGTACAATCTCTCTGTCTCCTaGACTGACTCCTCGGTGGTC +
Preference number: 5 (lower is better)
Translates to: NRSNWNTSQPGIKMTLKYNLSVS*TDSSVV
Trigger: GACCACCGAGGAGTCAGTCAAGGAGACAGAGAGATT...GTACTTCAAAGTCATCTTGATTCCTGGCTGTGAGGTGTTCCAGTTGCTTCTGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp AAACAAACACACACAGAGCTCTTTCAGTATACTGGCCTTGCAGAGCCTTATCCAAATCTCTCTGTCTCCTaGACTGACTCCTCGGTGGTC +
Preference number: 5 (lower is better)
Translates to: KQTHTELFQYTGLAEPYPNLSVS*TDSSVV
Trigger: GACCACCGAGGAGTCAGTCAAGGAGACAGAGAGATT...TGGATAAGGCTCTGCAAGGCCAGTATACTGAAAGAGCTCTGTGTGTGTTTGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS CCA 90 bp TGTAGACTTCTTCAGCCACATCAGTGCTCCGGAACCTTTGTTCTGTaGGAAATGTATACTTATTCAGCCACTCCAAAAGCGGCAGGTCAA +
Preference number: 5 (lower is better)
Translates to: CRLLQPHQCSGTFVL*EMYTYSATPKAAGQ
Trigger: TTGACCTGCCGCTTTTGGAGTGGCTGAATAAGTATACATTTCCCACAGAACAAAGGTTCCGGAGCACTGATGTGGCTGAAGAAGTCTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp CGAGCACAATGCAAATCTAAACAGCCCAATGGGAGGCACTGTCATGAAATTACATGGGTCTTGGCGATGTaGCCAAGTTCACTCATCAGA +
Preference number: 5 (lower is better)
Translates to: RAQCKSKQPNGRHCHEITWVLAM*PSSLIR
Trigger: TCTGATGAGTGAACTTGGCAACATCGCCAAGACCCA...TGTAATTTCATGACAGTGCCTCCCATTGGGCTGTTTAGATTTGCATTGTGCTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp TCTGTGCGAGCACAATGCAAATCTAAACAGCCCAATGGGAGGCACTGTCATGAAAGCGACAGATTAGAGTaGGGACAATGTGCAATGGAT +
Preference number: 5 (lower is better)
Translates to: SVRAQCKSKQPNGRHCHESDRLE*GQCAMD
Trigger: ATCCATTGCACATTGTCCCAACTCTAATCTGTCGCT...TTCATGACAGTGCCTCCCATTGGGCTGTTTAGATTTGCATTGTGCTCGCACAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS CCA 90 bp CACGATTTTCACTTATATGGCTCTGGATGTACAGATCATGGGTCTTaGCGATGTTGCCAAGTTCACTCATCAGAGTCTCCGTGCAAGAAA +
Preference number: 5 (lower is better)
Translates to: HDFHLYGSGCTDHGS*RCCQVHSSESPCKK
Trigger: TTTCTTGCACGGAGACTCTGATGAGTGAACTTGGCAACATCGCCAAGACCCATGATCTGTACATCCAGAGCCATATAAGTGAAAATCGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp AACAGAAGCAACTGGAACACCTCACAGCCAGGAATCAAGATGACTTTGAAGTACAAATCCATGCATACTTaGCCCACAAATGCTCGCTGC +
Preference number: 5 (lower is better)
Translates to: NRSNWNTSQPGIKMTLKYKSMHT*PTNARC
Trigger: GCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTT...GTACTTCAAAGTCATCTTGATTCCTGGCTGTGAGGTGTTCCAGTTGCTTCTGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp CGAGCACAATGCAAATCTAAACAGCCCAATGGGAGGCACTGTCATGAAATTACATCCTCGGTGGTCTCCTaGTATTCTGGAACAGTATCA +
Preference number: 5 (lower is better)
Translates to: RAQCKSKQPNGRHCHEITSSVVS*YSGTVS
Trigger: TGATACTGTTCCAGAATACAAGGAGACCACCGAGGA...TGTAATTTCATGACAGTGCCTCCCATTGGGCTGTTTAGATTTGCATTGTGCTCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS CCA 90 bp ATTTCTTCACGATTTTCACTTATATGGCTCTGGATGTACAGATCATaGGTCTTGGCGATGTTGCCAAGTTCACTCATCAGAGTCTCCGTG +
Preference number: 5 (lower is better)
Translates to: ISSRFSLIWLWMYRS*VLAMLPSSLIRVSV
Trigger: CACGGAGACTCTGATGAGTGAACTTGGCAACATCGCCAAGACCCATGATCTGTACATCCAGAGCCATATAAGTGAAAATCGTGAAGAAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp AACAGAAGCAACTGGAACACCTCACAGCCAGGAATCAAGATGACTTTGAAGTACAGTGCTCCGGAACCTTaGTTCTGTGGGAAATGTATA +
Preference number: 5 (lower is better)
Translates to: NRSNWNTSQPGIKMTLKYSAPEP*FCGKCI
Trigger: TATACATTTCCCACAGAACAAAGGTTCCGGAGCACT...GTACTTCAAAGTCATCTTGATTCCTGGCTGTGAGGTGTTCCAGTTGCTTCTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp AACAGAAGCAACTGGAACACCTCACAGCCAGGAATCAAGATGACTTTGAAGTACATGAGTCAGTGTGAATaGTTCCAAAGTAGCAAGCCG +
Preference number: 5 (lower is better)
Translates to: NRSNWNTSQPGIKMTLKYMSQCE*FQSSKP
Trigger: CGGCTTGCTACTTTGGAACAATTCACACTGACTCAT...GTACTTCAAAGTCATCTTGATTCCTGGCTGTGAGGTGTTCCAGTTGCTTCTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp CTCTCCCCTGTCTGCTTCTTCCCACGACATTATAAAGTGTATTGTGCAAAATCAAAATCCATGCATACTTaGCCCACAAATGCTCGCTGC +
Preference number: 5 (lower is better)
Translates to: LSPVCFFPRHYKVYCAKSKSMHT*PTNARC
Trigger: GCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTT...TGATTTTGCACAATACACTTTATAATGTCGTGGGAAGAAGCAGACAGGGGAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS-3UTR CAA 90 bp CTCTCCCCTGTCTGCTTCTTCCCACGACATTATAAAGTGTATTGTGCAAAATCATCCTCGGTGGTCTCCTaGTATTCTGGAACAGTATCA +
Preference number: 5 (lower is better)
Translates to: LSPVCFFPRHYKVYCAKSSSVVS*YSGTVS
Trigger: TGATACTGTTCCAGAATACAAGGAGACCACCGAGGA...TGATTTTGCACAATACACTTTATAATGTCGTGGGAAGAAGCAGACAGGGGAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS-3UTR CAA 90 bp GAGGGGAATCTGGCAGCTCATTTTGATATTTCTGATGTGCTAGCAATGCTGGACCTATGGGTTTCACCCTaGGATAATTCTTTTGCAGCA +
Preference number: 5 (lower is better)
Translates to: EGNLAAHFDISDVLAMLDLWVSP*DNSFAA
Trigger: TGCTGCAAAAGAATTATCCAAGGGTGAAACCCATAG...GTCCAGCATTGCTAGCACATCAGAAATATCAAAATGAGCTGCCAGATTCCCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS CCA 90 bp CTTTTCACGGCTTCAATTTCTTCACGATTTTCACTTATATGGCTCTaGATGTACAGATCATGGGTCTTGGCGATGTTGCCAAGTTCACTC +
Preference number: 5 (lower is better)
Translates to: LFTASISSRFSLIWL*MYRSWVLAMLPSSL
Trigger: GAGTGAACTTGGCAACATCGCCAAGACCCATGATCTGTACATCCAGAGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp AGTAGGTTCTCCTTTTACGAGACTGTTCTCTATATTAAATTTCCAAGCACAACCCTGATCTCACATGGTTaGAAGCACCACTCCTTGGCC +
Preference number: 5 (lower is better)
Translates to: SRFSFYETVLYIKFPSTTLISHG*KHHSLA
Trigger: GGCCAAGGAGTGGTGCTTCAAACCATGTGAGATCAG...GGTTGTGCTTGGAAATTTAATATAGAGAACAGTCTCGTAAAAGGAGAACCTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp ATCAGGACTAATCTGAATCTCAACAGGATGGTGTTACATTACCACTGCTATTCCTCCTCGGTGGTCTCCTaGTATTCTGGAACAGTATCA +
Preference number: 5 (lower is better)
Translates to: IRTNLNLNRMVLHYHCYSSSVVS*YSGTVS
Trigger: TGATACTGTTCCAGAATACAAGGAGACCACCGAGGA...GGAATAGCAGTGGTAATGTAACACCATCCTGTTGAGATTCAGATTAGTCCTGAT
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp AAAAGCGTGTGGCATTCAGGTTCTGACATTCATCCCAAGAAGGGAAAGCATAACCTATGGGTTTCACCCTaGGATAATTCTTTTGCAGCA +
Preference number: 5 (lower is better)
Translates to: KSVWHSGSDIHPKKGKHNLWVSP*DNSFAA
Trigger: TGCTGCAAAAGAATTATCCAAGGGTGAAACCCATAG...GTTATGCTTTCCCTTCTTGGGATGAATGTCAGAACCTGAATGCCACACGCTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp CTCTCCCCTGTCTGCTTCTTCCCACGACATTATAAAGTGTATTGTGCAAAATCAAGCGACAGATTAGAGTaGGGACAATGTGCAATGGAT +
Preference number: 5 (lower is better)
Translates to: LSPVCFFPRHYKVYCAKSSDRLE*GQCAMD
Trigger: ATCCATTGCACATTGTCCCAACTCTAATCTGTCGCT...TGATTTTGCACAATACACTTTATAATGTCGTGGGAAGAAGCAGACAGGGGAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS-3UTR CAA 90 bp AATCTAAACAGCCCAATGGGAGGCACTGTCATGAAATTACAATGCTCCCAGACTAGGGCATCAAATTCCTaGCCAACTTCAAAGTTTCCA +
Preference number: 5 (lower is better)
Translates to: NLNSPMGGTVMKLQCSQTRASNS*PTSKFP
Trigger: TGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCCT...AGTCTGGGAGCATTGTAATTTCATGACAGTGCCTCCCATTGGGCTGTTTAGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS GCA 90 bp ACAGTATCATTCAAATCCATGCATACTTTGCCCACAAATGCTCGCTaGCCAAATTTATCTGTAATTTCCGCAAGGATCAGGGATGAGTCA +
Preference number: 5 (lower is better)
Translates to: TVSFKSMHTLPTNAR*PNLSVISARIRDES
Trigger: TGACTCATCCCTGATCCTTGCGGAAATTACAGATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS GCA 90 bp TTCTGGAACAGTATCATTCAAATCCATGCATACTTTGCCCACAAATaGTCGCTGCCCAAATTTATCTGTAATTTCCGCAAGGATCAGGGA +
Preference number: 5 (lower is better)
Translates to: FWNSIIQIHAYFAHK*SLPKFICNFRKDQG
Trigger: TCCCTGATCCTTGCGGAAATTACAGATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp AATACTCAACTTCTGCCGAACACTTTGAAGCATAGAACTATATTTGAAAAGCGTTCTAGAAACACTATTTaGCCGCTGTCGCTCACGCCG +
Preference number: 5 (lower is better)
Translates to: NTQLLPNTLKHRTIFEKRSRNTI*PLSLTP
Trigger: CGGCGTGAGCGACAGCGGCAAAATAGTGTTTCTAGA...ACGCTTTTCAAATATAGTTCTATGCTTCAAAGTGTTCGGCAGAAGTTGAGTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS CCA 90 bp TATAAGCTTTTCACGGCTTCAATTTCTTCACGATTTTCACTTATATaGCTCTGGATGTACAGATCATGGGTCTTGGCGATGTTGCCAAGT +
Preference number: 5 (lower is better)
Translates to: YKLFTASISSRFSLI*LWMYRSWVLAMLPS
Trigger: ACTTGGCAACATCGCCAAGACCCATGATCTGTACATCCAGAGCCATATAAGTGAAAATCGTGAAGAAATTGAAGCCGTGAAAAGCTTATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp ATAGACAATGTCGATCTAGAAGCATGTTTTAAATCCAGTAGGTTCTCCTTTTACTGGGTCTTGGCGATGTaGCCAAGTTCACTCATCAGA +
Preference number: 5 (lower is better)
Translates to: IDNVDLEACFKSSRFSFYWVLAM*PSSLIR
Trigger: TCTGATGAGTGAACTTGGCAACATCGCCAAGACCCA...GTAAAAGGAGAACCTACTGGATTTAAAACATGCTTCTAGATCGACATTGTCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp ATCAGGACTAATCTGAATCTCAACAGGATGGTGTTACATTACCACTGCTATTCCAGGGCATCAAATTCCTaGCCAACTTCAAAGTTTCCA +
Preference number: 5 (lower is better)
Translates to: IRTNLNLNRMVLHYHCYSRASNS*PTSKFP
Trigger: TGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCCT...GGAATAGCAGTGGTAATGTAACACCATCCTGTTGAGATTCAGATTAGTCCTGAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp AGTAGGTTCTCCTTTTACGAGACTGTTCTCTATATTAAATTTCCAAGCACAACCATGAGTCAGTGTGAATaGTTCCAAAGTAGCAAGCCG +
Preference number: 5 (lower is better)
Translates to: SRFSFYETVLYIKFPSTTMSQCE*FQSSKP
Trigger: CGGCTTGCTACTTTGGAACAATTCACACTGACTCAT...GGTTGTGCTTGGAAATTTAATATAGAGAACAGTCTCGTAAAAGGAGAACCTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp TCTCCTTTTACGAGACTGTTCTCTATATTAAATTTCCAAGCACAACCAATGACTAAATCCATGCATACTTaGCCCACAAATGCTCGCTGC +
Preference number: 5 (lower is better)
Translates to: SPFTRLFSILNFQAQPMTKSMHT*PTNARC
Trigger: GCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTT...AGTCATTGGTTGTGCTTGGAAATTTAATATAGAGAACAGTCTCGTAAAAGGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp AATACTCAACTTCTGCCGAACACTTTGAAGCATAGAACTATATTTGAAAAGCGTAGTGCTCCGGAACCTTaGTTCTGTGGGAAATGTATA +
Preference number: 5 (lower is better)
Translates to: NTQLLPNTLKHRTIFEKRSAPEP*FCGKCI
Trigger: TATACATTTCCCACAGAACAAAGGTTCCGGAGCACT...ACGCTTTTCAAATATAGTTCTATGCTTCAAAGTGTTCGGCAGAAGTTGAGTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp TCTCCTTTTACGAGACTGTTCTCTATATTAAATTTCCAAGCACAACCAATGACTATGAGTCAGTGTGAATaGTTCCAAAGTAGCAAGCCG +
Preference number: 5 (lower is better)
Translates to: SPFTRLFSILNFQAQPMTMSQCE*FQSSKP
Trigger: CGGCTTGCTACTTTGGAACAATTCACACTGACTCAT...AGTCATTGGTTGTGCTTGGAAATTTAATATAGAGAACAGTCTCGTAAAAGGAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS-3UTR CAA 90 bp ACTCTTTTCAAATATTTGAATAGTCCAGCAACAGCAACCTTAAAAGATGTCCACCTATGGGTTTCACCCTaGGATAATTCTTTTGCAGCA +
Preference number: 5 (lower is better)
Translates to: TLFKYLNSPATATLKDVHLWVSP*DNSFAA
Trigger: TGCTGCAAAAGAATTATCCAAGGGTGAAACCCATAG...GTGGACATCTTTTAAGGTTGCTGTTGCTGGACTATTCAAATATTTGAAAAGAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS CCA 72 bp TCGCGAAGCACCTCCATGGGGCAGGTCCAGGTGGAGTaGACGAAAGTCCCTCGGAAGACGAGCGCCAGCGGC +
Preference number: 6 (lower is better)
Translates to: SRSTSMGQVQVE*TKVPRKTSASG
Trigger: GCCGCTGGCGCTCGTCTTCCGAGGGACTTTCGTCCACTCCACCTGGACCTGCCCCATGGAGGTGCTTCGCGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS CCA 72 bp CGCTCACGCCGAGGAGGTGATCGCGAAGCACCTCCATaGGGCAGGTCCAGGTGGAGTGGACGAAAGTCCCTC +
Preference number: 6 (lower is better)
Translates to: RSRRGGDREAPP*GRSRWSGRKSL
Trigger: GAGGGACTTTCGTCCACTCCACCTGGACCTGCCCCATGGAGGTGCTTCGCGATCACCTCCTCGGCGTGAGCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS TCA 72 bp AACACTATTTTGCCGCTGTCGCTCACGCCGAGGAGGTaGTCGCGAAGCACCTCCATGGGGCAGGTCCAGGTG +
Preference number: 6 (lower is better)
Translates to: NTILPLSLTPRR*SRSTSMGQVQV
Trigger: CACCTGGACCTGCCCCATGGAGGTGCTTCGCGATCACCTCCTCGGCGTGAGCGACAGCGGCAAAATAGTGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000087600.10
CDS TCA 72 bp AGCGGCAGGTCAACGTTGCTTCCAGCAAAGGCATACTaGGGGGCATGGATGTGGGTATCAACAAGGCCTGGC +
Preference number: 6 (lower is better)
Translates to: SGRSTLLPAKAY*GAWMWVSTRPG
Trigger: GCCAGGCCTTGTTGATACCCACATCCATGCCCCTCAGTATGCCTTTGCTGGAAGCAACGTTGACCTGCCGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS CAA 90 bp GGAGAGTCTGATGCTCTGGGGTTGATCAAGAGGGCATCAAATTCCTaGCCAACTTCAAAGTTTCCAATCTCGCTATCAAGCCCCAGGGCT +
Preference number: 6 (lower is better)
Translates to: GESDALGLIKRASNS*PTSKFPISLSSPRA
Trigger: AGCCCTGGGGCTTGATAGCGAGATTGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCCTCTTGATCAACCCCAGAGCATCAGACTCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS CCA 72 bp ATACTGAGGGGCATGGATGTGGGTATCAACAAGGCCTaGCATGAAGAACTCATGGTGGCTCAGTTCTCTGAT +
Preference number: 6 (lower is better)
Translates to: ILRGMDVGINKA*HEELMVAQFSD
Trigger: ATCAGAGAACTGAGCCACCATGAGTTCTTCATGCCAGGCCTTGTTGATACCCACATCCATGCCCCTCAGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087600.10
ENSMUST00000237823.2
CDS CAA 72 bp ACGTTCAGTAAGCCACTGCTCAGCGACAGATTAGAGTaGGGACAATGTGCAATGGATGCTCCTCGTTCACTG +
Preference number: 6 (lower is better)
Translates to: TFSKPLLSDRLE*GQCAMDAPRSL
Trigger: CAGTGAACGAGGAGCATCCATTGCACATTGTCCCAACTCTAATCTGTCGCTGAGCAGTGGCTTACTGAACGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS GCA 72 bp GCCACTGCTCAGCGACAGATTAGAGTTGGGACAATGTaGAATGGATGCTCCTCGTTCACTGAAGATGTTAAG +
Preference number: 6 (lower is better)
Translates to: ATAQRQIRVGTM*NGCSSFTEDVK
Trigger: CTTAACATCTTCAGTGAACGAGGAGCATCCATTGCACATTGTCCCAACTCTAATCTGTCGCTGAGCAGTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS CCA 72 bp CACTTATATGGCTCTGGATGTACAGATCATGGGTCTTaGCGATGTTGCCAAGTTCACTCATCAGAGTCTCCG +
Preference number: 6 (lower is better)
Translates to: HLYGSGCTDHGS*RCCQVHSSESP
Trigger: CGGAGACTCTGATGAGTGAACTTGGCAACATCGCCAAGACCCATGATCTGTACATCCAGAGCCATATAAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS CAA 90 bp ACCTCAAGCACGTTCAGTAAGCCACTGCTCAGCGACAGATTAGAGTaGGGACAATGTGCAATGGATGCTCCTCGTTCACTGAAGATGTTA +
Preference number: 6 (lower is better)
Translates to: TSSTFSKPLLSDRLE*GQCAMDAPRSLKML
Trigger: TAACATCTTCAGTGAACGAGGAGCATCCATTGCACATTGTCCCAACTCTAATCTGTCGCTGAGCAGTGGCTTACTGAACGTGCTTGAGGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS CCA 72 bp CTTCAGCCACATCAGTGCTCCGGAACCTTTGTTCTGTaGGAAATGTATACTTATTCAGCCACTCCAAAAGCG +
Preference number: 6 (lower is better)
Translates to: LQPHQCSGTFVL*EMYTYSATPKA
Trigger: CGCTTTTGGAGTGGCTGAATAAGTATACATTTCCCACAGAACAAAGGTTCCGGAGCACTGATGTGGCTGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS CCA 72 bp ACTCATCAGAGTCTCCGTGCAAGAAAGGGTAAAGCGTaGGGTCACTATGGGTTTCACCCTTGGATAATTCTT +
Preference number: 6 (lower is better)
Translates to: THQSLRARKGKA*GHYGFHPWIIL
Trigger: AAGAATTATCCAAGGGTGAAACCCATAGTGACCCCACGCTTTACCCTTTCTTGCACGGAGACTCTGATGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS CAA 72 bp TCACTTATATGGCTCTGGATGTACAGATCATGGGTCTaGGCGATGTTGCCAAGTTCACTCATCAGAGTCTCC +
Preference number: 6 (lower is better)
Translates to: SLIWLWMYRSWV*AMLPSSLIRVS
Trigger: GGAGACTCTGATGAGTGAACTTGGCAACATCGCCAAGACCCATGATCTGTACATCCAGAGCCATATAAGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS CAA 90 bp AACTCTAGTGTAGACTTCTTCAGCCACATCAGTGCTCCGGAACCTTaGTTCTGTGGGAAATGTATACTTATTCAGCCACTCCAAAAGCGG +
Preference number: 6 (lower is better)
Translates to: NSSVDFFSHISAPEP*FCGKCILIQPLQKR
Trigger: CCGCTTTTGGAGTGGCTGAATAAGTATACATTTCCCACAGAACAAAGGTTCCGGAGCACTGATGTGGCTGAAGAAGTCTACACTAGAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS CAA 90 bp GACACAAATCTCTCTGTCTCCTTGACTGACTCCTCGGTGGTCTCCTaGTATTCTGGAACAGTATCATTCAAATCCATGCATACTTTGCCC +
Preference number: 6 (lower is better)
Translates to: DTNLSVSLTDSSVVS*YSGTVSFKSMHTLP
Trigger: GGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGAGATTTGTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS CAA 90 bp TCACGATTTTCACTTATATGGCTCTGGATGTACAGATCATGGGTCTaGGCGATGTTGCCAAGTTCACTCATCAGAGTCTCCGTGCAAGAA +
Preference number: 6 (lower is better)
Translates to: SRFSLIWLWMYRSWV*AMLPSSLIRVSVQE
Trigger: TTCTTGCACGGAGACTCTGATGAGTGAACTTGGCAACATCGCCAAGACCCATGATCTGTACATCCAGAGCCATATAAGTGAAAATCGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS TCA 72 bp TTTGCAGCATTTCTGACACAAATCTCTCTGTCTCCTTaGCTGACTCCTCGGTGGTCTCCTTGTATTCTGGAA +
Preference number: 6 (lower is better)
Translates to: FAAFLTQISLSP*LTPRWSPCILE
Trigger: TTCCAGAATACAAGGAGACCACCGAGGAGTCAGTCAAGGAGACAGAGAGATTTGTGTCAGAAATGCTGCAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS CAA 72 bp GATGCTCTGGGGTTGATCAAGAGGGCATCAAATTCCTaGCCAACTTCAAAGTTTCCAATCTCGCTATCAAGC +
Preference number: 6 (lower is better)
Translates to: DALGLIKRASNS*PTSKFPISLSS
Trigger: GCTTGATAGCGAGATTGGAAACTTTGAAGTTGGCAAGGAATTTGATGCCCTCTTGATCAACCCCAGAGCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS CAA 90 bp CCCAGGGCTTGGCTTCCTCCAAGAGTGGCTAGTCTGAAGACTTCTTaGAGGGTGAGGTTTTTCTCATTTACCTTATTAATTAAGAGGACA +
Preference number: 6 (lower is better)
Translates to: PRAWLPPRVASLKTS*RVRFFSFTLLIKRT
Trigger: TGTCCTCTTAATTAATAAGGTAAATGAGAAAAACCTCACCCTCAAAGAAGTCTTCAGACTAGCCACTCTTGGAGGAAGCCAAGCCCTGGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS TCA 72 bp AAAACAGATCAATGGGAGAGTCTGATGCTCTGGGGTTaGTCAAGAGGGCATCAAATTCCTTGCCAACTTCAA +
Preference number: 6 (lower is better)
Translates to: KTDQWESLMLWG*SRGHQIPCQLQ
Trigger: TTGAAGTTGGCAAGGAATTTGATGCCCTCTTGATCAACCCCAGAGCATCAGACTCTCCCATTGATCTGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS CCA 72 bp CGATTTTCACTTATATGGCTCTGGATGTACAGATCATaGGTCTTGGCGATGTTGCCAAGTTCACTCATCAGA +
Preference number: 6 (lower is better)
Translates to: RFSLIWLWMYRS*VLAMLPSSLIR
Trigger: TCTGATGAGTGAACTTGGCAACATCGCCAAGACCCATGATCTGTACATCCAGAGCCATATAAGTGAAAATCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS TCA 72 bp CCCAAATTTATCTGTAATTTCCGCAAGGATCAGGGATaGGTCAGTGTGAATTGTTCCAAAGTAGCAAGCCGT +
Preference number: 6 (lower is better)
Translates to: PKFICNFRKDQG*VSVNCSKVASR
Trigger: ACGGCTTGCTACTTTGGAACAATTCACACTGACTCATCCCTGATCCTTGCGGAAATTACAGATAAATTTGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS GCA 72 bp TTCAAATCCATGCATACTTTGCCCACAAATGCTCGCTaGCCAAATTTATCTGTAATTTCCGCAAGGATCAGG +
Preference number: 6 (lower is better)
Translates to: FKSMHTLPTNAR*PNLSVISARIR
Trigger: CCTGATCCTTGCGGAAATTACAGATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS GCA 72 bp TCTCCTTGTATTCTGGAACAGTATCATTCAAATCCATaGATACTTTGCCCACAAATGCTCGCTGCCCAAATT +
Preference number: 6 (lower is better)
Translates to: SPCILEQYHSNP*ILCPQMLAAQI
Trigger: AATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS CAA 90 bp GTCTCCTTGTATTCTGGAACAGTATCATTCAAATCCATGCATACTTaGCCCACAAATGCTCGCTGCCCAAATTTATCTGTAATTTCCGCA +
Preference number: 6 (lower is better)
Translates to: VSLYSGTVSFKSMHT*PTNARCPNLSVISA
Trigger: TGCGGAAATTACAGATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATACAAGGAGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS CAA 72 bp TGGCTTCCTCCAAGAGTGGCTAGTCTGAAGACTTCTTaGAGGGTGAGGTTTTTCTCATTTACCTTATTAATT +
Preference number: 6 (lower is better)
Translates to: WLPPRVASLKTS*RVRFFSFTLLI
Trigger: AATTAATAAGGTAAATGAGAAAAACCTCACCCTCAAAGAAGTCTTCAGACTAGCCACTCTTGGAGGAAGCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2
CDS CAA 72 bp TATTCTGGAACAGTATCATTCAAATCCATGCATACTTaGCCCACAAATGCTCGCTGCCCAAATTTATCTGTA +
Preference number: 6 (lower is better)
Translates to: YSGTVSFKSMHT*PTNARCPNLSV
Trigger: TACAGATAAATTTGGGCAGCGAGCATTTGTGGGCAAAGTATGCATGGATTTGAATGATACTGTTCCAGAATA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000087600.10
ENSMUST00000121725.8
ENSMUST00000237823.2