RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GCSH (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034424

Ensembl transcript IDs: ENSMUST00000040484.6

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTTGAACTAACTAACATCTGCCTGTTGCGTGCTGGGATTAGAAGGTaGTCCGTCACCAAAACCAGCCTCATAACCACGTTTCACAGCAGA +
Preference number: 1 (lower is better)
Translates to: LELTNICLLRAGIRR*SVTKTSLITTFHSR
Trigger: TCTGCTGTGAAACGTGGTTATGAGGCTGGTTTTGGTGACGGACCACCTTCTAATCCCAGCACGCAACAGGCAGATGTTAGTTAGTTCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040484.6
3UTR GCA 90 bp AAAGAGGATGAATGTTTTATTTGTTTCGCAGTGTTGCAAAGCCGGTaGTTCACGGTGGGAAAACAACAGTCAACACAGCACATGGTGAAA +
Preference number: 1 (lower is better)
Translates to: KEDECFICFAVLQSR*FTVGKQQSTQHMVK
Trigger: TTTCACCATGTGCTGTGTTGACTGTTGTTTTCCCACCGTGAAGCACCGGCTTTGCAACACTGCGAAACAAATAAAACATTCATCCTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040484.6
3UTR GCA 90 bp TCACAATCAACAAAGAGGATGAATGTTTTATTTGTTTCGCAGTGTTaGAAAGCCGGTGCTTCACGGTGGGAAAACAACAGTCAACACAGC +
Preference number: 1 (lower is better)
Translates to: SQSTKRMNVLFVSQC*KAGASRWENNSQHS
Trigger: GCTGTGTTGACTGTTGTTTTCCCACCGTGAAGCACCGGCTTTGCAACACTGCGAAACAAATAAAACATTCATCCTCTTTGTTGATTGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040484.6
3UTR-3UTR TCA 90 bp AAGCCGGTGCTTCACGGTGGGAAAACAACAGTCAACACAGCACATGGTGAAACAGTACTCTCCTGCCTCTaGCACTGTACAACACTTCCT +
Preference number: 2 (lower is better)
Translates to: KPVLHGGKTTVNTAHGETVLSCL*HCTTLP
Trigger: AGGAAGTGTTGTACAGTGTCAGAGGCAGGAGAGTAC...TGTTTCACCATGTGCTGTGTTGACTGTTGTTTTCCCACCGTGAAGCACCGGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040484.6
3UTR-3UTR GCA 90 bp AAGCCGGTGCTTCACGGTGGGAAAACAACAGTCAACACAGCACATGGTGAAACACTAACATCTGCCTGTTaGGTGCTGGGATTAGAAGGT +
Preference number: 2 (lower is better)
Translates to: KPVLHGGKTTVNTAHGETLTSAC*VLGLEG
Trigger: ACCTTCTAATCCCAGCACGCAACAGGCAGATGTTAG...TGTTTCACCATGTGCTGTGTTGACTGTTGTTTTCCCACCGTGAAGCACCGGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040484.6
3UTR-3UTR CCA 90 bp AGCCGGTGCTTCACGGTGGGAAAACAACAGTCAACACAGCACATGGTGAAACAATTAAGACAAGCATGCTaGAGCACGTCACATCCAGTT +
Preference number: 2 (lower is better)
Translates to: SRCFTVGKQQSTQHMVKQLRQAC*STSHPV
Trigger: AACTGGATGTGACGTGCTCCAGCATGCTTGTCTTAA...TTGTTTCACCATGTGCTGTGTTGACTGTTGTTTTCCCACCGTGAAGCACCGGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040484.6
3UTR-3UTR CCA 90 bp TTCACGGTGGGAAAACAACAGTCAACACAGCACATGGTGAAACAAAGACAGTACCCATGTAGCTGTGGCTaGTCTAGAACTTGTTGTGTA +
Preference number: 2 (lower is better)
Translates to: FTVGKQQSTQHMVKQRQYPCSCG*SRTCCV
Trigger: TACACAACAAGTTCTAGACCAGCCACAGCTACATGG...GTACTGTCTTTGTTTCACCATGTGCTGTGTTGACTGTTGTTTTCCCACCGTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040484.6
3UTR CCA 72 bp ACTAACATCTGCCTGTTGCGTGCTGGGATTAGAAGGTaGTCCGTCACCAAAACCAGCCTCATAACCACGTTT +
Preference number: 3 (lower is better)
Translates to: TNICLLRAGIRR*SVTKTSLITTF
Trigger: AAACGTGGTTATGAGGCTGGTTTTGGTGACGGACCACCTTCTAATCCCAGCACGCAACAGGCAGATGTTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040484.6
3UTR GCA 72 bp GAATGTTTTATTTGTTTCGCAGTGTTGCAAAGCCGGTaGTTCACGGTGGGAAAACAACAGTCAACACAGCAC +
Preference number: 3 (lower is better)
Translates to: ECFICFAVLQSR*FTVGKQQSTQH
Trigger: GTGCTGTGTTGACTGTTGTTTTCCCACCGTGAAGCACCGGCTTTGCAACACTGCGAAACAAATAAAACATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040484.6
3UTR GCA 72 bp ACAAAGAGGATGAATGTTTTATTTGTTTCGCAGTGTTaGAAAGCCGGTGCTTCACGGTGGGAAAACAACAGT +
Preference number: 3 (lower is better)
Translates to: TKRMNVLFVSQC*KAGASRWENNS
Trigger: ACTGTTGTTTTCCCACCGTGAAGCACCGGCTTTGCAACACTGCGAAACAAATAAAACATTCATCCTCTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040484.6
3UTR-3UTR CAA 90 bp CACCAGACACTGGAACATCCTATAATTAAAATCAACCCTTCTAAAACTAGCAGTACTAACATCTGCCTGTaGCGTGCTGGGATTAGAAGG +
Preference number: 3 (lower is better)
Translates to: HQTLEHPIIKINPSKTSSTNICL*RAGIRR
Trigger: CCTTCTAATCCCAGCACGCAACAGGCAGATGTTAGT...ACTGCTAGTTTTAGAAGGGTTGATTTTAATTATAGGATGTTCCAGTGTCTGGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040484.6
CDS-3UTR TCA 90 bp GAGGATGAATGTTTTATTTGTTTCGCAGTGTTGCAAAGCCGGTGCTTCACGGTGAGATCCGGTGCGCAGTaGGCGGACGGCGGCGGCGCT +
Preference number: 4 (lower is better)
Translates to: EDECFICFAVLQSRCFTVRSGAQ*ADGGGA
Trigger: AGCGCCGCCGCCGTCCGCTCACTGCGCACCGGATCT...CACCGTGAAGCACCGGCTTTGCAACACTGCGAAACAAATAAAACATTCATCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040484.6
CDS-3UTR TCA 90 bp TTCACGGTGGGAAAACAACAGTCAACACAGCACATGGTGAAACAAAGACAGTACCAATTCATCCATCTCTaGAGGGTCACTCAGTGTCAT +
Preference number: 4 (lower is better)
Translates to: FTVGKQQSTQHMVKQRQYQFIHL*RVTQCH
Trigger: ATGACACTGAGTGACCCTTCAGAGATGGATGAATTG...GTACTGTCTTTGTTTCACCATGTGCTGTGTTGACTGTTGTTTTCCCACCGTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000040484.6
3UTR CAA 72 bp AACAAAGAGGATGAATGTTTTATTTGTTTCGCAGTGTaGCAAAGCCGGTGCTTCACGGTGGGAAAACAACAG +
Preference number: 4 (lower is better)
Translates to: NKEDECFICFAV*QSRCFTVGKQQ
Trigger: CTGTTGTTTTCCCACCGTGAAGCACCGGCTTTGCAACACTGCGAAACAAATAAAACATTCATCCTCTTTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040484.6
CDS-3UTR TCA 90 bp CACCAGACACTGGAACATCCTATAATTAAAATCAACCCTTCTAAAACTAGCAGTTTCGGTTACCTCTCCTaGCAGAGGAGAGTAGAGTTC +
Preference number: 4 (lower is better)
Translates to: HQTLEHPIIKINPSKTSSFGYLS*QRRVEF
Trigger: GAACTCTACTCTCCTCTGTCAGGAGAGGTAACCGAA...ACTGCTAGTTTTAGAAGGGTTGATTTTAATTATAGGATGTTCCAGTGTCTGGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000040484.6
CDS TCA 72 bp TTTACGCACCGACAGCAAAGCAGATCCGGTGCGCAGTaGGCGGACGGCGGCGGCGCTCGGTACACAGGGCCG +
Preference number: 6 (lower is better)
Translates to: FTHRQQSRSGAQ*ADGGGARYTGP
Trigger: CGGCCCTGTGTACCGAGCGCCGCCGCCGTCCGCTCACTGCGCACCGGATCTGCTTTGCTGTCGGTGCGTAAA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000040484.6