Pregenerated sensors for GCSAM (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022659Ensembl transcript IDs: ENSMUST00000023339.5, ENSMUST00000161347.9
Found 88 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GATTACATATCAGATGCAGCCATCCAATGTATGGACGCAGTAGATTaGGCTTATAAGTTTGTGGATTGGGCTGAAAGGAGGGCAAAAGGA | + |
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Preference number: 1 (lower is better) Translates to: DYISDAAIQCMDAVD*AYKFVDWAERRAKG Trigger: TCCTTTTGCCCTCCTTTCAGCCCAATCCACAAACTTATAAGCTCAATCTACTGCGTCCATACATTGGATGGCTGCATCTGATATGTAATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR TCA 90 bp | CCACAAGCCACATGTTACATTTTGTACAGCATTTCTTATCTTCAATaGCACATCCTTTGGACCCAAGTGACTTCTGGCCAAACACTACAC | + |
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Preference number: 1 (lower is better) Translates to: PQATCYILYSISYLQ*HILWTQVTSGQTLH Trigger: GTGTAGTGTTTGGCCAGAAGTCACTTGGGTCCAAAGGATGTGTCATTGAAGATAAGAAATGCTGTACAAAATGTAACATGTGGCTTGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR TCA 90 bp | AATGGGGTTAAAATCTTTCCAGAAACTTTCCACTTTGTCAGTTCCTaGCATTGTGGTGGTTCTACTGAGATTTATGTGGCAGCATTTGAG | + |
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Preference number: 1 (lower is better) Translates to: NGVKIFPETFHFVSS*HCGGSTEIYVAAFE Trigger: CTCAAATGCTGCCACATAAATCTCAGTAGAACCACCACAATGTCAGGAACTGACAAAGTGGAAAGTTTCTGGAAAGATTTTAACCCCATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
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| 3UTR-3UTR CCA 90 bp | GTGGTGGTTCTACTGAGATTTATGTGGCAGCATTTGAGCTGTCTCTTCATGGATGATCTCCCTGACCTATaGCTGCCTCAGCTAGAGTCC | + |
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Preference number: 2 (lower is better) Translates to: VVVLLRFMWQHLSCLFMDDLPDL*LPQLES Trigger: GGACTCTAGCTGAGGCAGCCATAGGTCAGGGAGATC...ATCCATGAAGAGACAGCTCAAATGCTGCCACATAAATCTCAGTAGAACCACCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
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| 3UTR-3UTR CCA 90 bp | GAGTCATGGAGACTAAGTAGCATTTCTCCATTACCTCCACTTCAGAACCTACCTTGTGGTACACCCCAGTaGAGATACCAGGAGCCCTTC | + |
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Preference number: 2 (lower is better) Translates to: ESWRLSSISPLPPLQNLPCGTPQ*RYQEPF Trigger: GAAGGGCTCCTGGTATCTCCACTGGGGTGTACCACA...AGGTAGGTTCTGAAGTGGAGGTAATGGAGAAATGCTACTTAGTCTCCATGACTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR CAA 90 bp | GTTCCTGACATTGTGGTGGTTCTACTGAGATTTATGTGGCAGCATTaGAGCTGTCTCTTCATGGATGATCCCTTGCCTACCGTGGAAGAC | + |
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Preference number: 2 (lower is better) Translates to: VPDIVVVLLRFMWQH*SCLFMDDPLPTVED Trigger: GTCTTCCACGGTAGGCAAGGGATCATCCATGAAGAGACAGCTCAAATGCTGCCACATAAATCTCAGTAGAACCACCACAATGTCAGGAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
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| 3UTR-3UTR TCA 90 bp | AATATTTTCCCGCCAGCTCATTGTTCTCTGCTCCTAATGAGTGTGTCAATAACCCTGTCTCTTCATGGATaGTCCCTTGCCTACCGTGGA | + |
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Preference number: 2 (lower is better) Translates to: NIFPPAHCSLLLMSVSITLSLHG*SLAYRG Trigger: TCCACGGTAGGCAAGGGATCATCCATGAAGAGACAG...GGTTATTGACACACTCATTAGGAGCAGAGAACAATGAGCTGGCGGGAAAATATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR CAA 90 bp | AGATTTATGTGGCAGCATTTGAGCTGTCTCTTCATGGATGATCCCTaGCCTACCGTGGAAGACGTTCTGAGAATGTTTTCCTGTACCATA | + |
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Preference number: 2 (lower is better) Translates to: RFMWQHLSCLFMDDP*PTVEDVLRMFSCTI Trigger: TATGGTACAGGAAAACATTCTCAGAACGTCTTCCACGGTAGGCAAGGGATCATCCATGAAGAGACAGCTCAAATGCTGCCACATAAATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
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| 3UTR-3UTR TCA 90 bp | TTCCAGAAACTTTCCACTTTGTCAGTTCCTGACATTGTGGTGGTTCTACTGAGACCGTGGAAGACGTTCTaGGAATGTTTTCCTGTACCA | + |
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Preference number: 2 (lower is better) Translates to: FQKLSTLSVPDIVVVLLRPWKTF*ECFPVP Trigger: TGGTACAGGAAAACATTCTCAGAACGTCTTCCACGG...TCTCAGTAGAACCACCACAATGTCAGGAACTGACAAAGTGGAAAGTTTCTGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
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| 3UTR-3UTR CCA 90 bp | GAGTCATGGAGACTAAGTAGCATTTCTCCATTACCTCCACTTCAGAACCTACCTGAGCTTATAAGTTTGTaGATTGGGCTGAAAGGAGGG | + |
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Preference number: 2 (lower is better) Translates to: ESWRLSSISPLPPLQNLPELISL*IGLKGG Trigger: CCCTCCTTTCAGCCCAATCCACAAACTTATAAGCTC...AGGTAGGTTCTGAAGTGGAGGTAATGGAGAAATGCTACTTAGTCTCCATGACTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR-3UTR TCA 90 bp | AAAAGGTATGTGTTAGTTCTCTCATGTGGACATTGCATGCATGCTGGACCATTTCCGTGGAAGACGTTCTaGGAATGTTTTCCTGTACCA | + |
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Preference number: 2 (lower is better) Translates to: KRYVLVLSCGHCMHAGPFPWKTF*ECFPVP Trigger: TGGTACAGGAAAACATTCTCAGAACGTCTTCCACGG...AAATGGTCCAGCATGCATGCAATGTCCACATGAGAGAACTAACACATACCTTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
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| 3UTR-3UTR TCA 90 bp | CACAGAGAAAAGGTATGTGTTAGTTCTCTCATGTGGACATTGCATGCATGCTGGTTGTGGTGGTTCTACTaGGATTTATGTGGCAGCATT | + |
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Preference number: 2 (lower is better) Translates to: HREKVCVSSLMWTLHACWLWWFY*DLCGSI Trigger: AATGCTGCCACATAAATCTCAGTAGAACCACCACAA...CCAGCATGCATGCAATGTCCACATGAGAGAACTAACACATACCTTTTCTCTGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
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| 3UTR-3UTR CCA 90 bp | TTTTATCCCAGCATCCTAAAGCAAACTAGAATGGATGATTACATATCAGATGCAGATCTCCCTGACCTATaGCTGCCTCAGCTAGAGTCC | + |
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Preference number: 2 (lower is better) Translates to: FYPSILKQTRMDDYISDADLPDL*LPQLES Trigger: GGACTCTAGCTGAGGCAGCCATAGGTCAGGGAGATC...TGCATCTGATATGTAATCATCCATTCTAGTTTGCTTTAGGATGCTGGGATAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR-3UTR TCA 90 bp | AATATTTTCCCGCCAGCTCATTGTTCTCTGCTCCTAATGAGTGTGTCAATAACCTTTGTAAGAACTTACTaGGAAGAGCAGAGCCTTTTG | + |
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Preference number: 2 (lower is better) Translates to: NIFPPAHCSLLLMSVSITFVRTY*EEQSLL Trigger: CAAAAGGCTCTGCTCTTCTCAGTAAGTTCTTACAAA...GGTTATTGACACACTCATTAGGAGCAGAGAACAATGAGCTGGCGGGAAAATATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR-3UTR CCA 90 bp | CATTGTATCGTACTGGGAATATTTCCACTGCCTTTCTGCCACAAAGGTTTAGCATGCAGAGTAAAGTTGTaGGGACAATTTGTAAGAACT | + |
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Preference number: 2 (lower is better) Translates to: HCIVLGIFPLPFCHKGLACRVKL*GQFVRT Trigger: AGTTCTTACAAATTGTCCCCACAACTTTACTCTGCA...TGCTAAACCTTTGTGGCAGAAAGGCAGTGGAAATATTCCCAGTACGATACAATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR-3UTR CCA 90 bp | GTTAGTTCTCTCATGTGGACATTGCATGCATGCTGGACCATTTACTCTATCAGATGCAGAGTAAAGTTGTaGGGACAATTTGTAAGAACT | + |
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Preference number: 2 (lower is better) Translates to: VSSLMWTLHACWTIYSIRCRVKL*GQFVRT Trigger: AGTTCTTACAAATTGTCCCCACAACTTTACTCTGCA...TCTGATAGAGTAAATGGTCCAGCATGCATGCAATGTCCACATGAGAGAACTAAC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
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| 3UTR CAA 90 bp | ATGTTACATTTTGTACAGCATTTCTTATCTTCAATGACACATCCTTaGGACCCAAGTGACTTCTGGCCAAACACTACACTTAGGCTTCTA | + |
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Preference number: 2 (lower is better) Translates to: MLHFVQHFLSSMTHP*DPSDFWPNTTLRLL Trigger: TAGAAGCCTAAGTGTAGTGTTTGGCCAGAAGTCACTTGGGTCCAAAGGATGTGTCATTGAAGATAAGAAATGCTGTACAAAATGTAACAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR-3UTR TCA 90 bp | ATTCTTTGCTATCATTTATCCTCAGGGTCTATGATAGATGATATAATGGCGAGGCCTCAACGAACATCTTaGCATCTTAGCATCCCTAAA | + |
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Preference number: 2 (lower is better) Translates to: ILCYHLSSGSMIDDIMARPQRTS*HLSIPK Trigger: TTTAGGGATGCTAAGATGTCAAGATGTTCGTTGAGG...CCTCGCCATTATATCATCTATCATAGACCCTGAGGATAAATGATAGCAAAGAAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR-3UTR CCA 90 bp | ATAAAACAACACCTTGCGGATGCAGGTGTGAATGTACAAATAGTCTCATTTGCTCGAATGTTAGACCCATaGAATAAAAGGAATATTGCC | + |
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Preference number: 2 (lower is better) Translates to: IKQHLADAGVNVQIVSFARMLDP*NKRNIA Trigger: GGCAATATTCCTTTTATTCCATGGGTCTAACATTCG...AGCAAATGAGACTATTTGTACATTCACACCTGCATCCGCAAGGTGTTGTTTTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR-3UTR CCA 90 bp | GAGCTACCTCTGTGGGGCATTTTAAGTAGAAAGTTATTCGTCTTTGATAACAAATGCTTATCTCCTTTGTaGTTTAATATTTTCCCGCCA | + |
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Preference number: 2 (lower is better) Translates to: ELPLWGILSRKLFVFDNKCLSPL*FNIFPP Trigger: TGGCGGGAAAATATTAAACCACAAAGGAGATAAGCA...TTTGTTATCAAAGACGAATAACTTTCTACTTAAAATGCCCCACAGAGGTAGCTC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR TCA 72 bp | TGGGTGTTTCTTTGGGGCTTCGTCTTGATTTATGATTaGCGTGGGAGGGCCACTCCCCTGCGTTGCCACCCC | + |
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Preference number: 3 (lower is better) Translates to: WVFLWGFVLIYD*RGRATPLRCHP Trigger: GGGGTGGCAACGCAGGGGAGTGGCCCTCCCACGTCAATCATAAATCAAGACGAAGCCCCAAAGAAACACCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR TCA 72 bp | CCTGTGGGTGTTTCTTTGGGGCTTCGTCTTGATTTATaGTTGACGTGGGAGGGCCACTCCCCTGCGTTGCCA | + |
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Preference number: 3 (lower is better) Translates to: PVGVSLGLRLDL*LTWEGHSPALP Trigger: TGGCAACGCAGGGGAGTGGCCCTCCCACGTCAATCATAAATCAAGACGAAGCCCCAAAGAAACACCCACAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR TCA 72 bp | GGCTTGACCTGTGGGTGTTTCTTTGGGGCTTCGTCTTaGTTTATGATTGACGTGGGAGGGCCACTCCCCTGC | + |
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Preference number: 3 (lower is better) Translates to: GLTCGCFFGASS*FMIDVGGPLPC Trigger: GCAGGGGAGTGGCCCTCCCACGTCAATCATAAATCAAGACGAAGCCCCAAAGAAACACCCACAGGTCAAGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR CCA 72 bp | ACTGAGAAGAGCAGAGCCTTTTGTGGTACACCCCAGTaGAGATACCAGGAGCCCTTCCTGCCACAGATTATT | + |
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Preference number: 3 (lower is better) Translates to: TEKSRAFCGTPQ*RYQEPFLPQII Trigger: AATAATCTGTGGCAGGAAGGGCTCCTGGTATCTCCACTGGGGTGTACCACAAAAGGCTCTGCTCTTCTCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
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| 3UTR TCA 72 bp | GAAGGGCCTCTAGAAGAAATAAACAAAGGATCTCCCTaGCCTATGGCTGCCTCAGCTAGAGTCCCTAACTCC | + |
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Preference number: 3 (lower is better) Translates to: EGPLEEINKGSP*PMAASARVPNS Trigger: GGAGTTAGGGACTCTAGCTGAGGCAGCCATAGGTCAGGGAGATCCTTTGTTTATTTCTTCTAGAGGCCCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
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| 3UTR CCA 72 bp | GGGAAGAAGGAACACCAGTTTAGCAATCTACTCCATTaGCTTGACCTGTGGGTGTTTCTTTGGGGCTTCGTC | + |
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Preference number: 3 (lower is better) Translates to: GKKEHQFSNLLH*LDLWVFLWGFV Trigger: GACGAAGCCCCAAAGAAACACCCACAGGTCAAGCCAATGGAGTAGATTGCTAAACTGGTGTTCCTTCTTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR-3UTR CAA 90 bp | GTGGTGGTTCTACTGAGATTTATGTGGCAGCATTTGAGCTGTCTCTTCATGGATGAAGAGCAGAGCCTTTaGTGGTACACCCCAGTGGAG | + |
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Preference number: 3 (lower is better) Translates to: VVVLLRFMWQHLSCLFMDEEQSL*WYTPVE Trigger: CTCCACTGGGGTGTACCACAAAAGGCTCTGCTCTTC...ATCCATGAAGAGACAGCTCAAATGCTGCCACATAAATCTCAGTAGAACCACCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
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| 3UTR TCA 72 bp | ATTTATGTGGCAGCATTTGAGCTGTCTCTTCATGGATaGTCCCTTGCCTACCGTGGAAGACGTTCTGAGAAT | + |
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Preference number: 3 (lower is better) Translates to: IYVAAFELSLHG*SLAYRGRRSEN Trigger: ATTCTCAGAACGTCTTCCACGGTAGGCAAGGGATCATCCATGAAGAGACAGCTCAAATGCTGCCACATAAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
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| 3UTR TCA 72 bp | TGTCTAATTTTTGAGTATTTGACTATTGTTAGACTCTaGGAGGCTTGCAGAGTCTGCCCTACGAAGGGCCTC | + |
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Preference number: 3 (lower is better) Translates to: CLIFEYLTIVRL*EACRVCPTKGL Trigger: GAGGCCCTTCGTAGGGCAGACTCTGCAAGCCTCTCAGAGTCTAACAATAGTCAAATACTCAAAAATTAGACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
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| 3UTR CCA 72 bp | CACCAGTTTAGCAATCTACTCCATTGGCTTGACCTGTaGGTGTTTCTTTGGGGCTTCGTCTTGATTTATGAT | + |
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Preference number: 3 (lower is better) Translates to: HQFSNLLHWLDL*VFLWGFVLIYD Trigger: ATCATAAATCAAGACGAAGCCCCAAAGAAACACCCACAGGTCAAGCCAATGGAGTAGATTGCTAAACTGGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR CCA 72 bp | GCTCACAGAGAAAAGGTATGTGTTAGTTCTCTCATGTaGACATTGCATGCATGCTGGACCATTTACTCTATC | + |
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Preference number: 3 (lower is better) Translates to: AHREKVCVSSLM*TLHACWTIYSI Trigger: GATAGAGTAAATGGTCCAGCATGCATGCAATGTCCACATGAGAGAACTAACACATACCTTTTCTCTGTGAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
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| 3UTR CCA 72 bp | ATGCTAGGCAAGGACCCTACTACTGAGCTACCTCTGTaGGGCATTTTAAGTAGAAAGTTATTCGTCTTTGAT | + |
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Preference number: 3 (lower is better) Translates to: MLGKDPTTELPL*GILSRKLFVFD Trigger: ATCAAAGACGAATAACTTTCTACTTAAAATGCCCCACAGAGGTAGCTCAGTAGTAGGGTCCTTGCCTAGCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR-3UTR CAA 90 bp | TTCCAAGTCATGGGGACCATGAAGCCAAGGACACTGTGTAAAGGACGAATGTTAGGAATAAAAGGAATATaGCCAGTTTCCATAGCAAGT | + |
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Preference number: 3 (lower is better) Translates to: FQVMGTMKPRTLCKGRMLGIKGI*PVSIAS Trigger: ACTTGCTATGGAAACTGGCAATATTCCTTTTATTCC...TAACATTCGTCCTTTACACAGTGTCCTTGGCTTCATGGTCCCCATGACTTGGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
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| 3UTR-3UTR CAA 90 bp | GAGCTACCTCTGTGGGGCATTTTAAGTAGAAAGTTATTCGTCTTTGATAACAAATTTCCCGCCAGCTCATaGTTCTCTGCTCCTAATGAG | + |
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Preference number: 3 (lower is better) Translates to: ELPLWGILSRKLFVFDNKFPASS*FSAPNE Trigger: CTCATTAGGAGCAGAGAACAATGAGCTGGCGGGAAA...TTTGTTATCAAAGACGAATAACTTTCTACTTAAAATGCCCCACAGAGGTAGCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR GCA 72 bp | GAGAAAAGGTATGTGTTAGTTCTCTCATGTGGACATTaGATGCATGCTGGACCATTTACTCTATCAGATAGC | + |
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Preference number: 3 (lower is better) Translates to: EKRYVLVLSCGH*MHAGPFTLSDS Trigger: GCTATCTGATAGAGTAAATGGTCCAGCATGCATGCAATGTCCACATGAGAGAACTAACACATACCTTTTCTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
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| 3UTR CCA 72 bp | CCAAGGACACTGTGTAAAGGACGAATGTTAGACCCATaGAATAAAAGGAATATTGCCAGTTTCCATAGCAAG | + |
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Preference number: 3 (lower is better) Translates to: PRTLCKGRMLDP*NKRNIASFHSK Trigger: CTTGCTATGGAAACTGGCAATATTCCTTTTATTCCATGGGTCTAACATTCGTCCTTTACACAGTGTCCTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
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| 3UTR CCA 72 bp | TCTTCAATGACACATCCTTTGGACCCAAGTGACTTCTaGCCAAACACTACACTTAGGCTTCTAAATGAAAGA | + |
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Preference number: 3 (lower is better) Translates to: SSMTHPLDPSDF*PNTTLRLLNER Trigger: TCTTTCATTTAGAAGCCTAAGTGTAGTGTTTGGCCAGAAGTCACTTGGGTCCAAAGGATGTGTCATTGAAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR-3UTR CAA 90 bp | GAGTCATGGAGACTAAGTAGCATTTCTCCATTACCTCCACTTCAGAACCTACCTTCTTGCTTATCTCCTTaGTGGTTTAATATTTTCCCG | + |
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Preference number: 3 (lower is better) Translates to: ESWRLSSISPLPPLQNLPSCLSP*WFNIFP Trigger: CGGGAAAATATTAAACCACAAAGGAGATAAGCAAGA...AGGTAGGTTCTGAAGTGGAGGTAATGGAGAAATGCTACTTAGTCTCCATGACTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR-3UTR CAA 90 bp | TTTTATCCCAGCATCCTAAAGCAAACTAGAATGGATGATTACATATCAGATGCACTCTGTCTGTCTGTCTaGTACATGCTAGGCAAGGAC | + |
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Preference number: 3 (lower is better) Translates to: FYPSILKQTRMDDYISDALCLSV*YMLGKD Trigger: GTCCTTGCCTAGCATGTACAAGACAGACAGACAGAG...TGCATCTGATATGTAATCATCCATTCTAGTTTGCTTTAGGATGCTGGGATAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR-3UTR CAA 90 bp | CCCAGCATCCTAAAGCAAACTAGAATGGATGATTACATATCAGATGCAGCCATCGGAATAAAAGGAATATaGCCAGTTTCCATAGCAAGT | + |
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Preference number: 3 (lower is better) Translates to: PSILKQTRMDDYISDAAIGIKGI*PVSIAS Trigger: ACTTGCTATGGAAACTGGCAATATTCCTTTTATTCC...GATGGCTGCATCTGATATGTAATCATCCATTCTAGTTTGCTTTAGGATGCTGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR-3UTR CAA 90 bp | ATAAAACAACACCTTGCGGATGCAGGTGTGAATGTACAAATAGTCTCATTTGCTCAGAAACTTTCCACTTaGTCAGTTCCTGACATTGTG | + |
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Preference number: 3 (lower is better) Translates to: IKQHLADAGVNVQIVSFAQKLST*SVPDIV Trigger: CACAATGTCAGGAACTGACAAAGTGGAAAGTTTCTG...AGCAAATGAGACTATTTGTACATTCACACCTGCATCCGCAAGGTGTTGTTTTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR-3UTR CAA 90 bp | ATTCTTTGCTATCATTTATCCTCAGGGTCTATGATAGATGATATAATGGCGAGGGGCACTTGGCCTGTTTaGTATTTTCTCTGTCTCTCT | + |
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Preference number: 3 (lower is better) Translates to: ILCYHLSSGSMIDDIMARGTWPV*YFLCLS Trigger: AGAGAGACAGAGAAAATACAAAACAGGCCAAGTGCC...CCTCGCCATTATATCATCTATCATAGACCCTGAGGATAAATGATAGCAAAGAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR TCA 72 bp | TGTGTTTCAATAAACGTTTATCTACAAAAATACAGGTaGTGGGCTAGATTGGGCCAGTCAGTAGGTTGTGCA | + |
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Preference number: 3 (lower is better) Translates to: CVSINVYLQKYR*WARLGQSVGCA Trigger: TGCACAACCTACTGACTGGCCCAATCTAGCCCATCACCTGTATTTTTGTAGATAAACGTTTATTGAAACACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
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| 3UTR GCA 72 bp | CTAACCACTTGTTGCAGCAGCATGTCTTTTTCCATATaGTTTAAAAGGCGTCTGTTTCTCTCTATTCTTTGC | + |
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Preference number: 3 (lower is better) Translates to: LTTCCSSMSFSI*FKRRLFLSILC Trigger: GCAAAGAATAGAGAGAAACAGACGCCTTTTAAAGCATATGGAAAAAGACATGCTGCTGCAACAAGTGGTTAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR TCA 72 bp | AAAATCTTTCCAGAAACTTTCCACTTTGTCAGTTCCTaGCATTGTGGTGGTTCTACTGAGATTTATGTGGCA | + |
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Preference number: 3 (lower is better) Translates to: KIFPETFHFVSS*HCGGSTEIYVA Trigger: TGCCACATAAATCTCAGTAGAACCACCACAATGTCAGGAACTGACAAAGTGGAAAGTTTCTGGAAAGATTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
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| 3UTR CCA 72 bp | ATGAATTGCAAACAAATACAGCTCATTGTATCGTACTaGGAATATTTCCACTGCCTTTCTGCCACAAAGGTT | + |
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Preference number: 3 (lower is better) Translates to: MNCKQIQLIVSY*EYFHCLSATKV Trigger: AACCTTTGTGGCAGAAAGGCAGTGGAAATATTCCCAGTACGATACAATGAGCTGTATTTGTTTGCAATTCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
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| 3UTR GCA 72 bp | ATATGCTTTAAAAGGCGTCTGTTTCTCTCTATTCTTTaGTATCATTTATCCTCAGGGTCTATGATAGATGAT | + |
|
Preference number: 3 (lower is better) Translates to: ICFKRRLFLSIL*YHLSSGSMIDD Trigger: ATCATCTATCATAGACCCTGAGGATAAATGATAGCAAAGAATAGAGAGAAACAGACGCCTTTTAAAGCATAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
||
| CDS-3UTR TCA 90 bp | CACAGAGAAAAGGTATGTGTTAGTTCTCTCATGTGGACATTGCATGCATGCTGGCTCAGCAGGGTTCACTaGTGGCCTTCCCCTGACAGC | + |
|
Preference number: 4 (lower is better) Translates to: HREKVCVSSLMWTLHACWLSRVH*WPSPDS Trigger: GCTGTCAGGGGAAGGCCATCAGTGAACCCTGCTGAG...CCAGCATGCATGCAATGTCCACATGAGAGAACTAACACATACCTTTTCTCTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
||
| CDS-3UTR TCA 90 bp | GTTAGTTCTCTCATGTGGACATTGCATGCATGCTGGACCATTTACTCTATCAGACTCAGCAGGGTTCACTaGTGGCCTTCCCCTGACAGC | + |
|
Preference number: 4 (lower is better) Translates to: VSSLMWTLHACWTIYSIRLSRVH*WPSPDS Trigger: GCTGTCAGGGGAAGGCCATCAGTGAACCCTGCTGAG...TCTGATAGAGTAAATGGTCCAGCATGCATGCAATGTCCACATGAGAGAACTAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
||
| CDS-3UTR CCA 90 bp | TTCCAAGTCATGGGGACCATGAAGCCAAGGACACTGTGTAAAGGACGAATGTTATGTCCAGCTGCCATCTaGTTGTCCTCTGCAAACAGT | + |
|
Preference number: 4 (lower is better) Translates to: FQVMGTMKPRTLCKGRMLCPAAI*LSSANS Trigger: ACTGTTTGCAGAGGACAACCAGATGGCAGCTGGACA...TAACATTCGTCCTTTACACAGTGTCCTTGGCTTCATGGTCCCCATGACTTGGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161347.9 |
||
| CDS-3UTR TCA 90 bp | GCCTCAGCTAGAGTCCCTAACTCCTACTTTTATCTGTCAGTGCTAAACAAACTCAACAACTCCAGCCCCTaGAGTATCTGGTTGTCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: ASARVPNSYFYLSVLNKLNNSSP*SIWLSS Trigger: AGAGGACAACCAGATACTTCAGGGGCTGGAGTTGTT...GAGTTTGTTTAGCACTGACAGATAAAAGTAGGAGTTAGGGACTCTAGCTGAGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
||
| CDS-3UTR TCA 90 bp | GAGTCATGGAGACTAAGTAGCATTTCTCCATTACCTCCACTTCAGAACCTACCTGTCCTGAACGGGAGCTaGAGTCATCCCTTCATTTTG | + |
|
Preference number: 4 (lower is better) Translates to: ESWRLSSISPLPPLQNLPVLNGS*SHPFIL Trigger: CAAAATGAAGGGATGACTTCAGCTCCCGTTCAGGAC...AGGTAGGTTCTGAAGTGGAGGTAATGGAGAAATGCTACTTAGTCTCCATGACTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
||
| CDS-3UTR TCA 90 bp | AAAAGGTATGTGTTAGTTCTCTCATGTGGACATTGCATGCATGCTGGACCATTTAGCGGCCGTGGCTGTTaGAAGGCATGTGAGGAGAAT | + |
|
Preference number: 4 (lower is better) Translates to: KRYVLVLSCGHCMHAGPFSGRGC*KACEEN Trigger: ATTCTCCTCACATGCCTTTCAACAGCCACGGCCGCT...AAATGGTCCAGCATGCATGCAATGTCCACATGAGAGAACTAACACATACCTTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
||
| CDS-3UTR TCA 90 bp | GTGGTGGTTCTACTGAGATTTATGTGGCAGCATTTGAGCTGTCTCTTCATGGATTTCTTCCCTTGGCACTaGGTCTCAGATTCCAAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: VVVLLRFMWQHLSCLFMDFFPWH*VSDSKV Trigger: CACCTTGGAATCTGAGACTCAGTGCCAAGGGAAGAA...ATCCATGAAGAGACAGCTCAAATGCTGCCACATAAATCTCAGTAGAACCACCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161347.9 |
||
| 3UTR CAA 72 bp | CCACTGCACTTACTCTTAGTGGGCACTTGGCCTGTTTaGTATTTTCTCTGTCTCTCTCTGTCTCTCTCTGTC | + |
|
Preference number: 4 (lower is better) Translates to: PLHLLLVGTWPV*YFLCLSLSLSV Trigger: GACAGAGAGAGACAGAGAGAGACAGAGAAAATACAAAACAGGCCAAGTGCCCACTAAGAGTAAGTGCAGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
||
| CDS-3UTR TCA 90 bp | ATAGCAAGTGGTACTAAGCTGGAATTTAACAGTGATGAGGAATTCTCTCGGGGTGTCCTGAACGGGAGCTaGAGTCATCCCTTCATTTTG | + |
|
Preference number: 4 (lower is better) Translates to: IASGTKLEFNSDEEFSRGVLNGS*SHPFIL Trigger: CAAAATGAAGGGATGACTTCAGCTCCCGTTCAGGAC...ACCCCGAGAGAATTCCTCATCACTGTTAAATTCCAGCTTAGTACCACTTGCTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
||
| CDS-3UTR TCA 90 bp | ATGTTAGACCCATGGAATAAAAGGAATATTGCCAGTTTCCATAGCAAGTGGTACAGCGGCCGTGGCTGTTaGAAGGCATGTGAGGAGAAT | + |
|
Preference number: 4 (lower is better) Translates to: MLDPWNKRNIASFHSKWYSGRGC*KACEEN Trigger: ATTCTCCTCACATGCCTTTCAACAGCCACGGCCGCT...GTACCACTTGCTATGGAAACTGGCAATATTCCTTTTATTCCATGGGTCTAACAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
||
| CDS-3UTR GCA 90 bp | GTTAGTTCTCTCATGTGGACATTGCATGCATGCTGGACCATTTACTCTATCAGATTCCAAGGTGTTTCCTaGATGTCCAGCTGCCATCTG | + |
|
Preference number: 4 (lower is better) Translates to: VSSLMWTLHACWTIYSIRFQGVS*MSSCHL Trigger: CAGATGGCAGCTGGACATGCAGGAAACACCTTGGAA...TCTGATAGAGTAAATGGTCCAGCATGCATGCAATGTCCACATGAGAGAACTAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161347.9 |
||
| CDS-3UTR CCA 90 bp | GTTAGTTCTCTCATGTGGACATTGCATGCATGCTGGACCATTTACTCTATCAGACATATTCATCATCTGTaGAAGGTAGGGGCTGAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: VSSLMWTLHACWTIYSIRHIHHL*KVGAEG Trigger: CCCCTCAGCCCCTACCTTCCACAGATGATGAATATG...TCTGATAGAGTAAATGGTCCAGCATGCATGCAATGTCCACATGAGAGAACTAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
||
| CDS-3UTR CCA 90 bp | ATAGCAAGTGGTACTAAGCTGGAATTTAACAGTGATGAGGAATTCTCTCGGGGTCATATTCATCATCTGTaGAAGGTAGGGGCTGAGGGG | + |
|
Preference number: 4 (lower is better) Translates to: IASGTKLEFNSDEEFSRGHIHHL*KVGAEG Trigger: CCCCTCAGCCCCTACCTTCCACAGATGATGAATATG...ACCCCGAGAGAATTCCTCATCACTGTTAAATTCCAGCTTAGTACCACTTGCTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
||
| 3UTR CAA 72 bp | ATTGTGGTGGTTCTACTGAGATTTATGTGGCAGCATTaGAGCTGTCTCTTCATGGATGATCCCTTGCCTACC | + |
|
Preference number: 4 (lower is better) Translates to: IVVVLLRFMWQH*SCLFMDDPLPT Trigger: GGTAGGCAAGGGATCATCCATGAAGAGACAGCTCAAATGCTGCCACATAAATCTCAGTAGAACCACCACAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
||
| CDS-3UTR TCA 90 bp | GTTAGTTCTCTCATGTGGACATTGCATGCATGCTGGACCATTTACTCTATCAGAAACAACTCCAGCCCCTaGAGTATCTGCATGTTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: VSSLMWTLHACWTIYSIRNNSSP*SICMFF Trigger: GAAGAACATGCAGATACTTCAGGGGCTGGAGTTGTT...TCTGATAGAGTAAATGGTCCAGCATGCATGCAATGTCCACATGAGAGAACTAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161347.9 |
||
| CDS-3UTR GCA 90 bp | TTCCAAGTCATGGGGACCATGAAGCCAAGGACACTGTGTAAAGGACGAATGTTAGTCATCCCTTCATTTTaGTTTGGAGACTCTTGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: FQVMGTMKPRTLCKGRMLVIPSF*FGDSCL Trigger: CAGACAAGAGTCTCCAAAGCAAAATGAAGGGATGAC...TAACATTCGTCCTTTACACAGTGTCCTTGGCTTCATGGTCCCCATGACTTGGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
||
| CDS-3UTR TCA 90 bp | TTCCAGAAACTTTCCACTTTGTCAGTTCCTGACATTGTGGTGGTTCTACTGAGAAGTCTCTGTTCCTCTTaGAGACTCTTTGTGTCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: FQKLSTLSVPDIVVVLLRSLCSS*RLFVSL Trigger: GAGAGACACAAAGAGTCTTCAAGAGGAACAGAGACT...TCTCAGTAGAACCACCACAATGTCAGGAACTGACAAAGTGGAAAGTTTCTGGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
||
| CDS-3UTR CCA 90 bp | GTGGTGGTTCTACTGAGATTTATGTGGCAGCATTTGAGCTGTCTCTTCATGGATCCCTTCATTTTGCTTTaGAGACTCTTGTCTGGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: VVVLLRFMWQHLSCLFMDPFILL*RLLSGF Trigger: AAAGCCAGACAAGAGTCTCCAAAGCAAAATGAAGGG...ATCCATGAAGAGACAGCTCAAATGCTGCCACATAAATCTCAGTAGAACCACCAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
||
| CDS-3UTR TCA 90 bp | AAAAGGTATGTGTTAGTTCTCTCATGTGGACATTGCATGCATGCTGGACCATTTAGTCTCTGTTCCTCTTaGAGACTCTTTGTGTCTCTC | + |
|
Preference number: 4 (lower is better) Translates to: KRYVLVLSCGHCMHAGPFSLCSS*RLFVSL Trigger: GAGAGACACAAAGAGTCTTCAAGAGGAACAGAGACT...AAATGGTCCAGCATGCATGCAATGTCCACATGAGAGAACTAACACATACCTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
||
| CDS-3UTR GCA 90 bp | GTTAGTTCTCTCATGTGGACATTGCATGCATGCTGGACCATTTACTCTATCAGAGTCATCCCTTCATTTTaGTTTGGAGACTCTTGTCTG | + |
|
Preference number: 4 (lower is better) Translates to: VSSLMWTLHACWTIYSIRVIPSF*FGDSCL Trigger: CAGACAAGAGTCTCCAAAGCAAAATGAAGGGATGAC...TCTGATAGAGTAAATGGTCCAGCATGCATGCAATGTCCACATGAGAGAACTAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
||
| 3UTR CAA 72 bp | TTTGTACAGCATTTCTTATCTTCAATGACACATCCTTaGGACCCAAGTGACTTCTGGCCAAACACTACACTT | + |
|
Preference number: 4 (lower is better) Translates to: FVQHFLSSMTHP*DPSDFWPNTTL Trigger: AAGTGTAGTGTTTGGCCAGAAGTCACTTGGGTCCAAAGGATGTGTCATTGAAGATAAGAAATGCTGTACAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
||
| CDS-3UTR CCA 90 bp | GAGCTACCTCTGTGGGGCATTTTAAGTAGAAAGTTATTCGTCTTTGATAACAAACCCTTCATTTTGCTTTaGAGACTCTTGTCTGGCTTT | + |
|
Preference number: 4 (lower is better) Translates to: ELPLWGILSRKLFVFDNKPFILL*RLLSGF Trigger: AAAGCCAGACAAGAGTCTCCAAAGCAAAATGAAGGG...TTTGTTATCAAAGACGAATAACTTTCTACTTAAAATGCCCCACAGAGGTAGCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
||
| CDS GCA 90 bp | CATGTTCTTCCCTTGGCACTGAGTCTCAGATTCCAAGGTGTTTCCTaGATGTCCAGCTGCCATCTGGTTGTCCTCTGCAAACAGTTCCCC | + |
|
Preference number: 5 (lower is better) Translates to: HVLPLALSLRFQGVS*MSSCHLVVLCKQFP Trigger: GGGGAACTGTTTGCAGAGGACAACCAGATGGCAGCTGGACATGCAGGAAACACCTTGGAATCTGAGACTCAGTGCCAAGGGAAGAACATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161347.9 |
||
| CDS TCA 90 bp | TGTTCTCGTAGAACCCCTCAGCAGGGTTCACTGATGGCCTTCCCCTaGCAGCTTCGTGATCAACAAGGATGTAGCACAACTCTTCTGTGT | + |
|
Preference number: 5 (lower is better) Translates to: CSRRTPQQGSLMAFP*QLRDQQGCSTTLLC Trigger: ACACAGAAGAGTTGTGCTACATCCTTGTTGATCACGAAGCTGTCAGGGGAAGGCCATCAGTGAACCCTGCTGAGGGGTTCTACGAGAACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
||
| CDS TCA 90 bp | GTGCGTATGTTTTTCCAAGGAAGGCAGGAGCATCCTTCAACGCTGTaGCAACAACTCCAGCCCCTGAAGTATCTGGTTGTCCTCTGCAAA | + |
|
Preference number: 5 (lower is better) Translates to: VRMFFQGRQEHPSTL*QQLQPLKYLVVLCK Trigger: TTTGCAGAGGACAACCAGATACTTCAGGGGCTGGAGTTGTTGTCACAGCGTTGAAGGATGCTCCTGCCTTCCTTGGAAAAACATACGCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
||
| CDS TCA 90 bp | GTGCGTATGTTTTTCCAAGGAAGGCAGGAGCATCCTTCAACGCTGTaGCAACAACTCCAGCCCCTGAAGTATCTGCATGTTCTTCCCTTG | + |
|
Preference number: 5 (lower is better) Translates to: VRMFFQGRQEHPSTL*QQLQPLKYLHVLPL Trigger: CAAGGGAAGAACATGCAGATACTTCAGGGGCTGGAGTTGTTGTCACAGCGTTGAAGGATGCTCCTGCCTTCCTTGGAAAAACATACGCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161347.9 |
||
| CDS-3UTR CAA 90 bp | ACTCTGAGAGGCTTGCAGAGTCTGCCCTACGAAGGGCCTCTAGAAGAAATAAACCTGCATGTTCTTCCCTaGGCACTGAGTCTCAGATTC | + |
|
Preference number: 5 (lower is better) Translates to: TLRGLQSLPYEGPLEEINLHVLP*ALSLRF Trigger: GAATCTGAGACTCAGTGCCAAGGGAAGAACATGCAG...GTTTATTTCTTCTAGAGGCCCTTCGTAGGGCAGACTCTGCAAGCCTCTCAGAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161347.9 |
||
| CDS TCA 90 bp | TGTCTCGTAGGGGGTTGTAAGCGGCCGTGGCTGTTGAAAGGCATGTaGGGAGAATCTGCTGGGCATAAGAAGTTCATATTCATCATCTGT | + |
|
Preference number: 5 (lower is better) Translates to: CLVGGCKRPWLLKGM*GESAGHKKFIFIIC Trigger: ACAGATGATGAATATGAACTTCTTATGCCCAGCAGATTCTCCTCACATGCCTTTCAACAGCCACGGCCGCTTACAACCCCCTACGAGACA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
||
| CDS TCA 90 bp | GGGAGAAGGGAAACGGAGAACCGAATACTCAGTCTCTGTTCCTCTTaGAGACTCTTTGTGTCTCTCAGCCTTGTTAGAGATGTTCTCGTA | + |
|
Preference number: 5 (lower is better) Translates to: GRRETENRILSLCSS*RLFVSLSLVRDVLV Trigger: TACGAGAACATCTCTAACAAGGCTGAGAGACACAAAGAGTCTTCAAGAGGAACAGAGACTGAGTATTCGGTTCTCCGTTTCCCTTCTCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
||
| CDS-3UTR CAA 90 bp | TTCCAAGTCATGGGGACCATGAAGCCAAGGACACTGTGTAAAGGACGAATGTTATTGCTTTGGAGACTCTaGTCTGGCTTTAAATGTGCG | + |
|
Preference number: 5 (lower is better) Translates to: FQVMGTMKPRTLCKGRMLLLWRL*SGFKCA Trigger: CGCACATTTAAAGCCAGACAAGAGTCTCCAAAGCAA...TAACATTCGTCCTTTACACAGTGTCCTTGGCTTCATGGTCCCCATGACTTGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
||
| CDS-3UTR CAA 90 bp | ATGCTGGACCATTTACTCTATCAGATAGCACACTCAGCAGCAACACTGACTTGGCCTCTTGAAGACTCTTaGTGTCTCTCAGCCTTGTTA | + |
|
Preference number: 5 (lower is better) Translates to: MLDHLLYQIAHSAATLTWPLEDS*CLSALL Trigger: TAACAAGGCTGAGAGACACAAAGAGTCTTCAAGAGG...CCAAGTCAGTGTTGCTGCTGAGTGTGCTATCTGATAGAGTAAATGGTCCAGCAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
||
| CDS-3UTR CAA 90 bp | TTCCAAGTCATGGGGACCATGAAGCCAAGGACACTGTGTAAAGGACGAATGTTACCTCTTGAAGACTCTTaGTGTCTCTCAGCCTTGTTA | + |
|
Preference number: 5 (lower is better) Translates to: FQVMGTMKPRTLCKGRMLPLEDS*CLSALL Trigger: TAACAAGGCTGAGAGACACAAAGAGTCTTCAAGAGG...TAACATTCGTCCTTTACACAGTGTCCTTGGCTTCATGGTCCCCATGACTTGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
||
| CDS-3UTR CAA 90 bp | AGTAAAGTTGTGGGGACAATTTGTAAGAACTTACTGAGAAGAGCAGAGCCTTTTCCAGCTGCCATCTGGTaGTCCTCTGCAAACAGTTCC | + |
|
Preference number: 5 (lower is better) Translates to: SKVVGTICKNLLRRAEPFPAAIW*SSANSS Trigger: GGAACTGTTTGCAGAGGACAACCAGATGGCAGCTGG...AAAAGGCTCTGCTCTTCTCAGTAAGTTCTTACAAATTGTCCCCACAACTTTACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161347.9 |
||
| CDS-3UTR CAA 90 bp | ATAGCAAGTGGTACTAAGCTGGAATTTAACAGTGATGAGGAATTCTCTCGGGGTTTGCTTTGGAGACTCTaGTCTGGCTTTAAATGTGCG | + |
|
Preference number: 5 (lower is better) Translates to: IASGTKLEFNSDEEFSRGLLWRL*SGFKCA Trigger: CGCACATTTAAAGCCAGACAAGAGTCTCCAAAGCAA...ACCCCGAGAGAATTCCTCATCACTGTTAAATTCCAGCTTAGTACCACTTGCTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
||
| CDS-3UTR CAA 90 bp | AATATTTTCCCGCCAGCTCATTGTTCTCTGCTCCTAATGAGTGTGTCAATAACCCAGTCTCTGTTCCTCTaGAAGACTCTTTGTGTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: NIFPPAHCSLLLMSVSITQSLFL*KTLCVS Trigger: AGAGACACAAAGAGTCTTCAAGAGGAACAGAGACTG...GGTTATTGACACACTCATTAGGAGCAGAGAACAATGAGCTGGCGGGAAAATATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
||
| CDS GCA 72 bp | CCCTTGGCACTGAGTCTCAGATTCCAAGGTGTTTCCTaGATGTCCAGCTGCCATCTGGTTGTCCTCTGCAAA | + |
|
Preference number: 6 (lower is better) Translates to: PLALSLRFQGVS*MSSCHLVVLCK Trigger: TTTGCAGAGGACAACCAGATGGCAGCTGGACATGCAGGAAACACCTTGGAATCTGAGACTCAGTGCCAAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161347.9 |
||
| CDS TCA 72 bp | AGCATCCTTCAACGCTGTGACAACAACTCCAGCCCCTaGAGTATCTGGTTGTCCTCTGCAAACAGTTCCCCA | + |
|
Preference number: 6 (lower is better) Translates to: SILQRCDNNSSP*SIWLSSANSSP Trigger: TGGGGAACTGTTTGCAGAGGACAACCAGATACTTCAGGGGCTGGAGTTGTTGTCACAGCGTTGAAGGATGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
||
| CDS TCA 72 bp | GGGGGTTGTAAGCGGCCGTGGCTGTTGAAAGGCATGTaGGGAGAATCTGCTGGGCATAAGAAGTTCATATTC | + |
|
Preference number: 6 (lower is better) Translates to: GGCKRPWLLKGM*GESAGHKKFIF Trigger: GAATATGAACTTCTTATGCCCAGCAGATTCTCCTCACATGCCTTTCAACAGCCACGGCCGCTTACAACCCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023339.5 ENSMUST00000161347.9 |
||
| CDS CAA 72 bp | CAACTCCAGCCCCTGAAGTATCTGCATGTTCTTCCCTaGGCACTGAGTCTCAGATTCCAAGGTGTTTCCTGC | + |
|
Preference number: 6 (lower is better) Translates to: QLQPLKYLHVLP*ALSLRFQGVSC Trigger: GCAGGAAACACCTTGGAATCTGAGACTCAGTGCCAAGGGAAGAACATGCAGATACTTCAGGGGCTGGAGTTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161347.9 |
||
| CDS TCA 72 bp | TTTTTCCAAGGAAGGCAGGAGCATCCTTCAACGCTGTaGCAACAACTCCAGCCCCTGAAGTATCTGGTTGTC | + |
|
Preference number: 6 (lower is better) Translates to: FFQGRQEHPSTL*QQLQPLKYLVV Trigger: GACAACCAGATACTTCAGGGGCTGGAGTTGTTGTCACAGCGTTGAAGGATGCTCCTGCCTTCCTTGGAAAAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023339.5 |
||
| CDS TCA 72 bp | TTTTTCCAAGGAAGGCAGGAGCATCCTTCAACGCTGTaGCAACAACTCCAGCCCCTGAAGTATCTGCATGTT | + |
|
Preference number: 6 (lower is better) Translates to: FFQGRQEHPSTL*QQLQPLKYLHV Trigger: AACATGCAGATACTTCAGGGGCTGGAGTTGTTGTCACAGCGTTGAAGGATGCTCCTGCCTTCCTTGGAAAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000161347.9 |
||