RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GCNT2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021360

Ensembl transcript IDs: ENSMUST00000067778.8, ENSMUST00000069958.15, ENSMUST00000110191.10, ENSMUST00000223570.2, ENSMUST00000225759.2

Found 237 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TGGGGCGGGGGAGTGCCCAGGCACAAGGACCTGTGTGAGGAGGTTTaGGCGTTCCTTTCAGTAGTGGACTCTCTCCCTCTGTCCCGTGGG +
Preference number: 1 (lower is better)
Translates to: WGGGVPRHKDLCEEV*AFLSVVDSLPLSRG
Trigger: CCCACGGGACAGAGGGAGAGAGTCCACTACTGAAAGGAACGCTCAAACCTCCTCACACAGGTCCTTGTGCCTGGGCACTCCCCCGCCCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR TCA 90 bp AGAAGAGAACACTCTGGAATAGAACACGGAAATGTCCGGCATCCCTaGGGCATCCTCTTCCTGCAGCCACCTCCCGTCTCACGGCACGTG +
Preference number: 1 (lower is better)
Translates to: RREHSGIEHGNVRHP*GILFLQPPPVSRHV
Trigger: CACGTGCCGTGAGACGGGAGGTGGCTGCAGGAAGAGGATGCCTCAGGGATGCCGGACATTTCCGTGTTCTATTCCAGAGTGTTCTCTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR GCA 90 bp CAAGATGCAGGTCCTCATGTGGCCCACCAGAGGGGTGAGTATGTGTaGGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTC +
Preference number: 1 (lower is better)
Translates to: QDAGPHVAHQRGEYV*GLFNKRRQEGVGGV
Trigger: GACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACACATACTCACCCCTCTGGTGGGCCACATGAGGACCTGCATCTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR CCA 90 bp GACAGTTTCATGCAGCCATCCTGTCAAATGTATTACAGTGCTCAGTaGATATTGCAAGCAGAGCCATGTTGCCAGATCCTCACGGTTCCC +
Preference number: 1 (lower is better)
Translates to: DSFMQPSCQMYYSAQ*ILQAEPCCQILTVP
Trigger: GGGAACCGTGAGGATCTGGCAACATGGCTCTGCTTGCAATATCCACTGAGCACTGTAATACATTTGACAGGATGGCTGCATGAAACTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR CCA 90 bp GCTGACGAATGGATGGATGGATGGATGGATGGATGGATGGATGGATaGATGGATGAGGGAACAAGGAAAAATGACACAGATGTCCACCTG +
Preference number: 1 (lower is better)
Translates to: ADEWMDGWMDGWMDG*MDEGTRKNDTDVHL
Trigger: CAGGTGGACATCTGTGTCATTTTTCCTTGTTCCCTCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATTCGTCAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR GCA 90 bp TCATGCAGCCATCCTGTCAAATGTATTACAGTGCTCAGTGGATATTaGAAGCAGAGCCATGTTGCCAGATCCTCACGGTTCCCTGAAAAC +
Preference number: 1 (lower is better)
Translates to: SCSHPVKCITVLSGY*KQSHVARSSRFPEN
Trigger: GTTTTCAGGGAACCGTGAGGATCTGGCAACATGGCTCTGCTTGCAATATCCACTGAGCACTGTAATACATTTGACAGGATGGCTGCATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR GCA 90 bp GGTCTTAGAATTTGCTTCCTACTGATCATGAACCATCCTAAGGCTTaGTACATCATCTGCAAGATGCAGGTCCTCATGTGGCCCACCAGA +
Preference number: 1 (lower is better)
Translates to: GLRICFLLIMNHPKA*YIICKMQVLMWPTR
Trigger: TCTGGTGGGCCACATGAGGACCTGCATCTTGCAGATGATGTAGCAAGCCTTAGGATGGTTCATGATCAGTAGGAAGCAAATTCTAAGACC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR CCA 90 bp ACGAATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATaGATGAGGGAACAAGGAAAAATGACACAGATGTCCACCTGTCAT +
Preference number: 1 (lower is better)
Translates to: TNGWMDGWMDGWMDG*MREQGKMTQMSTCH
Trigger: ATGACAGGTGGACATCTGTGTCATTTTTCCTTGTTCCCTCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATTCGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR CCA 90 bp GAATGTAGGCTGACGAATGGATGGATGGATGGATGGATGGATGGATaGATGGATGGATGGATGAGGGAACAAGGAAAAATGACACAGATG +
Preference number: 1 (lower is better)
Translates to: ECRLTNGWMDGWMDG*MDGWMREQGKMTQM
Trigger: CATCTGTGTCATTTTTCCTTGTTCCCTCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATTCGTCAGCCTACATTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR CCA 90 bp TTTCTCATTAATAACACTGAGACCATTCTTAAACTCCACCTTCTCTaGCGACACTACACACGGCTATACTTCATCTTCTCTCCACATCCC +
Preference number: 1 (lower is better)
Translates to: FLINNTETILKLHLL*RHYTRLYFIFSPHP
Trigger: GGGATGTGGAGAGAAGATGAAGTATAGCCGTGTGTAGTGTCGCCAGAGAAGGTGGAGTTTAAGAATGGTCTCAGTGTTATTAATGAGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp TCTGTCCCGTGGGACCCAGGAATTGAATGCAGGTCATCAGGTTTGGCTGCAAGCCGCCAGAGCCAGGTGTaGTTGTCCACACTCGGACTA +
Preference number: 2 (lower is better)
Translates to: SVPWDPGIECRSSGLAASRQSQV*LSTLGL
Trigger: TAGTCCGAGTGTGGACAACCACACCTGGCTCTGGCG...GCTTGCAGCCAAACCTGATGACCTGCATTCAATTCCTGGGTCCCACGGGACAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR TCA 90 bp TCTGTCCCGTGGGACCCAGGAATTGAATGCAGGTCATCAGGTTTGGCTGCAAGCCACAAGACCCGTGCGTaGTGCTGGAGATGGAACCTA +
Preference number: 2 (lower is better)
Translates to: SVPWDPGIECRSSGLAASHKTRA*CWRWNL
Trigger: TAGGTTCCATCTCCAGCATCACGCACGGGTCTTGTG...GCTTGCAGCCAAACCTGATGACCTGCATTCAATTCCTGGGTCCCACGGGACAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR CAA 90 bp CTTTCAGTAGTGGACTCTCTCCCTCTGTCCCGTGGGACCCAGGAATaGAATGCAGGTCATCAGGTTTGGCTGCAAGCACCCTCACCTACT +
Preference number: 2 (lower is better)
Translates to: LSVVDSLPLSRGTQE*NAGHQVWLQAPSPT
Trigger: AGTAGGTGAGGGTGCTTGCAGCCAAACCTGATGACCTGCATTCAATTCCTGGGTCCCACGGGACAGAGGGAGAGAGTCCACTACTGAAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR TCA 90 bp TCTTGCTTCCCTCGTGTCTGTCAGCATGTGTCTGGGGGAATCATAGACATTCAAAGACGGAGACGCAGATaGGCGTCAAGTGACCGCCAG +
Preference number: 2 (lower is better)
Translates to: SCFPRVCQHVSGGIIDIQRRRRR*ASSDRQ
Trigger: CTGGCGGTCACTTGACGCTCATCTGCGTCTCCGTCT...TTGAATGTCTATGATTCCCCCAGACACATGCTGACAGACACGAGGGAAGCAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR GCA 90 bp ATGTGTGTATGCATATGGGGCGGGGGAGTGCCCAGGCACAAGGACCTGTGTGAGTGCTGGACAGTTTCATaGAGCCATCCTGTCAAATGT +
Preference number: 2 (lower is better)
Translates to: MCVCIWGGGVPRHKDLCECWTVS*SHPVKC
Trigger: ACATTTGACAGGATGGCTGCATGAAACTGTCCAGCA...CTCACACAGGTCCTTGTGCCTGGGCACTCCCCCGCCCCATATGCATACACACAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp ATGTGTGTATGCATATGGGGCGGGGGAGTGCCCAGGCACAAGGACCTGTGTGAGTCGGTCACTTGTGAATaGCTTTGTTCTGTCCACAGA +
Preference number: 2 (lower is better)
Translates to: MCVCIWGGGVPRHKDLCESVTCE*LCSVHR
Trigger: TCTGTGGACAGAACAAAGCCATTCACAAGTGACCGA...CTCACACAGGTCCTTGTGCCTGGGCACTCCCCCGCCCCATATGCATACACACAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp TCTGTCCCGTGGGACCCAGGAATTGAATGCAGGTCATCAGGTTTGGCTGCAAGCCGTTCCAGTGTTCTCTaGGAGAAGAGAACACTCTGG +
Preference number: 2 (lower is better)
Translates to: SVPWDPGIECRSSGLAASRSSVL*EKRTLW
Trigger: CCAGAGTGTTCTCTTCTCCCAGAGAACACTGGAACG...GCTTGCAGCCAAACCTGATGACCTGCATTCAATTCCTGGGTCCCACGGGACAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp TCTGTCCCGTGGGACCCAGGAATTGAATGCAGGTCATCAGGTTTGGCTGCAAGCAAACTCCACCTTCTCTaGCGACACTACACACGGCTA +
Preference number: 2 (lower is better)
Translates to: SVPWDPGIECRSSGLAASKLHLL*RHYTRL
Trigger: TAGCCGTGTGTAGTGTCGCCAGAGAAGGTGGAGTTT...GCTTGCAGCCAAACCTGATGACCTGCATTCAATTCCTGGGTCCCACGGGACAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR TCA 90 bp GAGACAAGAAGGAGTTGGTGGAGTCACAAAGAGGCTCTAGCTTTCGTTTCCTCCCACAAGACCCGTGCGTaGTGCTGGAGATGGAACCTA +
Preference number: 2 (lower is better)
Translates to: ETRRSWWSHKEALAFVSSHKTRA*CWRWNL
Trigger: TAGGTTCCATCTCCAGCATCACGCACGGGTCTTGTG...GGAGGAAACGAAAGCTAGAGCCTCTTTGTGACTCCACCAACTCCTTCTTGTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR TCA 90 bp ATGTGTGTATGCATATGGGGCGGGGGAGTGCCCAGGCACAAGGACCTGTGTGAGACATCCCTAAAGAAATaGGAGACTCAGAAAGACACC +
Preference number: 2 (lower is better)
Translates to: MCVCIWGGGVPRHKDLCETSLKK*ETQKDT
Trigger: GGTGTCTTTCTGAGTCTCTCATTTCTTTAGGGATGT...CTCACACAGGTCCTTGTGCCTGGGCACTCCCCCGCCCCATATGCATACACACAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR TCA 90 bp TGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCACAAAGAAGACGGAGACGCAGATaGGCGTCAAGTGACCGCCAG +
Preference number: 2 (lower is better)
Translates to: CADSSIKGDKKELVESQRRRRRR*ASSDRQ
Trigger: CTGGCGGTCACTTGACGCTCATCTGCGTCTCCGTCT...TCTTTGTGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR GCA 90 bp TCTGTCCCGTGGGACCCAGGAATTGAATGCAGGTCATCAGGTTTGGCTGCAAGCTGCTGGACAGTTTCATaGAGCCATCCTGTCAAATGT +
Preference number: 2 (lower is better)
Translates to: SVPWDPGIECRSSGLAASCWTVS*SHPVKC
Trigger: ACATTTGACAGGATGGCTGCATGAAACTGTCCAGCA...GCTTGCAGCCAAACCTGATGACCTGCATTCAATTCCTGGGTCCCACGGGACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR GCA 90 bp AGTATGTGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCAGAGGCATCCTCTTCCTaGAGCCACCTCCCGTCTCAC +
Preference number: 2 (lower is better)
Translates to: SMCADSSIKGDKKELVESEASSS*SHLPSH
Trigger: GTGAGACGGGAGGTGGCTGCAGGAAGAGGATGCCTC...TGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACACATACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR GCA 90 bp TCTGTCCCGTGGGACCCAGGAATTGAATGCAGGTCATCAGGTTTGGCTGCAAGCAGAAAGAATCTGTCTTaGTTCCCTCGTGTCTGTCAG +
Preference number: 2 (lower is better)
Translates to: SVPWDPGIECRSSGLAASRKNLS*FPRVCQ
Trigger: CTGACAGACACGAGGGAAGCAAGACAGATTCTTTCT...GCTTGCAGCCAAACCTGATGACCTGCATTCAATTCCTGGGTCCCACGGGACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp TCTGTCCCGTGGGACCCAGGAATTGAATGCAGGTCATCAGGTTTGGCTGCAAGCTCGGTCACTTGTGAATaGCTTTGTTCTGTCCACAGA +
Preference number: 2 (lower is better)
Translates to: SVPWDPGIECRSSGLAASSVTCE*LCSVHR
Trigger: TCTGTGGACAGAACAAAGCCATTCACAAGTGACCGA...GCTTGCAGCCAAACCTGATGACCTGCATTCAATTCCTGGGTCCCACGGGACAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR GCA 90 bp TCTTGCTTCCCTCGTGTCTGTCAGCATGTGTCTGGGGGAATCATAGACATTCAAAGGAAGCTGTCTCTGTaGGCCTATGTGTGCCTGAGA +
Preference number: 2 (lower is better)
Translates to: SCFPRVCQHVSGGIIDIQRKLSL*AYVCLR
Trigger: TCTCAGGCACACATAGGCGCACAGAGACAGCTTCCT...TTGAATGTCTATGATTCCCCCAGACACATGCTGACAGACACGAGGGAAGCAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR GCA 90 bp GACACTACACACGGCTATACTTCATCTTCTCTCCACATCCCTAAAGAAATGAGAGAGGCATCCTCTTCCTaGAGCCACCTCCCGTCTCAC +
Preference number: 2 (lower is better)
Translates to: DTTHGYTSSSLHIPKEMREASSS*SHLPSH
Trigger: GTGAGACGGGAGGTGGCTGCAGGAAGAGGATGCCTC...TCTCATTTCTTTAGGGATGTGGAGAGAAGATGAAGTATAGCCGTGTGTAGTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR GCA 90 bp TCTGTCCCGTGGGACCCAGGAATTGAATGCAGGTCATCAGGTTTGGCTGCAAGCAACCATCCTAAGGCTTaGTACATCATCTGCAAGATG +
Preference number: 2 (lower is better)
Translates to: SVPWDPGIECRSSGLAASNHPKA*YIICKM
Trigger: CATCTTGCAGATGATGTAGCAAGCCTTAGGATGGTT...GCTTGCAGCCAAACCTGATGACCTGCATTCAATTCCTGGGTCCCACGGGACAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR GCA 90 bp ACCCTTTATTACCCGACACAACCCATTTTACTTTTCAGCAGAAGAGACAAGAGATATGGGGCGGGGGAGTaGCCAGGCACAAGGACCTGT +
Preference number: 2 (lower is better)
Translates to: TLYYPTQPILLFSRRDKRYGAGE*PGTRTC
Trigger: ACAGGTCCTTGTGCCTGGGCACTCCCCCGCCCCATA...TCTCTTGTCTCTTCTGCTGAAAAGTAAAATGGGTTGTGTCGGGTAATAAAGGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp TCTGTCCCGTGGGACCCAGGAATTGAATGCAGGTCATCAGGTTTGGCTGCAAGCTATTACAGTGCTCAGTaGATATTGCAAGCAGAGCCA +
Preference number: 2 (lower is better)
Translates to: SVPWDPGIECRSSGLAASYYSAQ*ILQAEP
Trigger: TGGCTCTGCTTGCAATATCCACTGAGCACTGTAATA...GCTTGCAGCCAAACCTGATGACCTGCATTCAATTCCTGGGTCCCACGGGACAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp ATGTGTGTATGCATATGGGGCGGGGGAGTGCCCAGGCACAAGGACCTGTGTGAGTGTCAGTCAAATGCTTaGACACTGAACTTACATAGT +
Preference number: 2 (lower is better)
Translates to: MCVCIWGGGVPRHKDLCECQSNA*TLNLHS
Trigger: ACTATGTAAGTTCAGTGTCCAAGCATTTGACTGACA...CTCACACAGGTCCTTGTGCCTGGGCACTCCCCCGCCCCATATGCATACACACAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR CAA 90 bp GCTGATACCACTCCCCAGAGTTTAACAGTGGAGAAAGAATCTGTCTaGCTTCCCTCGTGTCTGTCAGCATGTGTCTGGGGGAATCATAGA +
Preference number: 2 (lower is better)
Translates to: ADTTPQSLTVEKESV*LPSCLSACVWGNHR
Trigger: TCTATGATTCCCCCAGACACATGCTGACAGACACGAGGGAAGCAAGACAGATTCTTTCTCCACTGTTAAACTCTGGGGAGTGGTATCAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR TCA 90 bp ACCCTTTATTACCCGACACAACCCATTTTACTTTTCAGCAGAAGAGACAAGAGAAGACGGAGACGCAGATaGGCGTCAAGTGACCGCCAG +
Preference number: 2 (lower is better)
Translates to: TLYYPTQPILLFSRRDKRRRRRR*ASSDRQ
Trigger: CTGGCGGTCACTTGACGCTCATCTGCGTCTCCGTCT...TCTCTTGTCTCTTCTGCTGAAAAGTAAAATGGGTTGTGTCGGGTAATAAAGGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR TCA 90 bp TCTTGCTTCCCTCGTGTCTGTCAGCATGTGTCTGGGGGAATCATAGACATTCAAGCTGTCGGTCACTTGTaGATGGCTTTGTTCTGTCCA +
Preference number: 2 (lower is better)
Translates to: SCFPRVCQHVSGGIIDIQAVGHL*MALFCP
Trigger: TGGACAGAACAAAGCCATTCACAAGTGACCGACAGC...TTGAATGTCTATGATTCCCCCAGACACATGCTGACAGACACGAGGGAAGCAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR GCA 90 bp AAGAAGGAGTTGGTGGAGTCACAAAGAGGCTCTAGCTTTCGTTTCCTCCTTCCTGTGCTCAGTGGATATTaGAAGCAGAGCCATGTTGCC +
Preference number: 2 (lower is better)
Translates to: KKELVESQRGSSFRFLLPVLSGY*KQSHVA
Trigger: GGCAACATGGCTCTGCTTGCAATATCCACTGAGCAC...AGGAAGGAGGAAACGAAAGCTAGAGCCTCTTTGTGACTCCACCAACTCCTTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR GCA 90 bp TGGATGGATGGATGGATGGATGGATGGATGGATGAGGGAACAAGGAAAAATGACAGGAAGCTGTCTCTGTaGGCCTATGTGTGCCTGAGA +
Preference number: 2 (lower is better)
Translates to: WMDGWMDGWMDEGTRKNDRKLSL*AYVCLR
Trigger: TCTCAGGCACACATAGGCGCACAGAGACAGCTTCCT...GTCATTTTTCCTTGTTCCCTCATCCATCCATCCATCCATCCATCCATCCATCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR TCA 90 bp TGGATGGATGGATGGATGGATGGATGGATGGATGAGGGAACAAGGAAAAATGACGCTGTCGGTCACTTGTaGATGGCTTTGTTCTGTCCA +
Preference number: 2 (lower is better)
Translates to: WMDGWMDGWMDEGTRKNDAVGHL*MALFCP
Trigger: TGGACAGAACAAAGCCATTCACAAGTGACCGACAGC...GTCATTTTTCCTTGTTCCCTCATCCATCCATCCATCCATCCATCCATCCATCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR TCA 90 bp GAGACAAGAAGGAGTTGGTGGAGTCACAAAGAGGCTCTAGCTTTCGTTTCCTCCTTGTTGAATGTAGGCTaGCGAATGGATGGATGGATG +
Preference number: 2 (lower is better)
Translates to: ETRRSWWSHKEALAFVSSLLNVG*RMDGWM
Trigger: CATCCATCCATCCATTCGTCAGCCTACATTCAACAA...GGAGGAAACGAAAGCTAGAGCCTCTTTGTGACTCCACCAACTCCTTCTTGTCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR GCA 90 bp TGGATGGATGGATGGATGGATGGATGGATGGATGAGGGAACAAGGAAAAATGACGTGCTCAGTGGATATTaGAAGCAGAGCCATGTTGCC +
Preference number: 2 (lower is better)
Translates to: WMDGWMDGWMDEGTRKNDVLSGY*KQSHVA
Trigger: GGCAACATGGCTCTGCTTGCAATATCCACTGAGCAC...GTCATTTTTCCTTGTTCCCTCATCCATCCATCCATCCATCCATCCATCCATCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp TCTGTCCCGTGGGACCCAGGAATTGAATGCAGGTCATCAGGTTTGGCTGCAAGCTGTCAGTCAAATGCTTaGACACTGAACTTACATAGT +
Preference number: 2 (lower is better)
Translates to: SVPWDPGIECRSSGLAASCQSNA*TLNLHS
Trigger: ACTATGTAAGTTCAGTGTCCAAGCATTTGACTGACA...GCTTGCAGCCAAACCTGATGACCTGCATTCAATTCCTGGGTCCCACGGGACAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR TCA 90 bp ACCCTTTATTACCCGACACAACCCATTTTACTTTTCAGCAGAAGAGACAAGAGACACAAGACCCGTGCGTaGTGCTGGAGATGGAACCTA +
Preference number: 2 (lower is better)
Translates to: TLYYPTQPILLFSRRDKRHKTRA*CWRWNL
Trigger: TAGGTTCCATCTCCAGCATCACGCACGGGTCTTGTG...TCTCTTGTCTCTTCTGCTGAAAAGTAAAATGGGTTGTGTCGGGTAATAAAGGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR TCA 90 bp AGTATGTGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCAGCTGTCGGTCACTTGTaGATGGCTTTGTTCTGTCCA +
Preference number: 2 (lower is better)
Translates to: SMCADSSIKGDKKELVESAVGHL*MALFCP
Trigger: TGGACAGAACAAAGCCATTCACAAGTGACCGACAGC...TGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACACATACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR TCA 90 bp AAGAAGGAGTTGGTGGAGTCACAAAGAGGCTCTAGCTTTCGTTTCCTCCTTCCTTTGTTGAATGTAGGCTaGCGAATGGATGGATGGATG +
Preference number: 2 (lower is better)
Translates to: KKELVESQRGSSFRFLLPLLNVG*RMDGWM
Trigger: CATCCATCCATCCATTCGTCAGCCTACATTCAACAA...AGGAAGGAGGAAACGAAAGCTAGAGCCTCTTTGTGACTCCACCAACTCCTTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR TCA 90 bp ATTTACAGTAAAGAGGTGACCAACAATGGGCATGTAAACTTCTCCAGAAAAAGAGGCCCACCAGAGGGGTaGGTATGTGTGCGGACTCTT +
Preference number: 2 (lower is better)
Translates to: IYSKEVTNNGHVNFSRKRGPPEG*VCVRTL
Trigger: AAGAGTCCGCACACATACTCACCCCTCTGGTGGGCC...TCTTTTTCTGGAGAAGTTTACATGCCCATTGTTGGTCACCTCTTTACTGTAAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR GCA 90 bp GACACTACACACGGCTATACTTCATCTTCTCTCCACATCCCTAAAGAAATGAGAAGGAAGCTGTCTCTGTaGGCCTATGTGTGCCTGAGA +
Preference number: 2 (lower is better)
Translates to: DTTHGYTSSSLHIPKEMRRKLSL*AYVCLR
Trigger: TCTCAGGCACACATAGGCGCACAGAGACAGCTTCCT...TCTCATTTCTTTAGGGATGTGGAGAGAAGATGAAGTATAGCCGTGTGTAGTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp TGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCACAAAGACGTTCCAGTGTTCTCTaGGAGAAGAGAACACTCTGG +
Preference number: 2 (lower is better)
Translates to: CADSSIKGDKKELVESQRRSSVL*EKRTLW
Trigger: CCAGAGTGTTCTCTTCTCCCAGAGAACACTGGAACG...TCTTTGTGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR GCA 90 bp ACCCTTTATTACCCGACACAACCCATTTTACTTTTCAGCAGAAGAGACAAGAGAGCATGTATGTGTGTATaGATATGGGGCGGGGGAGTG +
Preference number: 2 (lower is better)
Translates to: TLYYPTQPILLFSRRDKRACMCV*IWGGGV
Trigger: CACTCCCCCGCCCCATATGCATACACACATACATGC...TCTCTTGTCTCTTCTGCTGAAAAGTAAAATGGGTTGTGTCGGGTAATAAAGGGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp AAGAAGGAGTTGGTGGAGTCACAAAGAGGCTCTAGCTTTCGTTTCCTCCTTCCTTATTACAGTGCTCAGTaGATATTGCAAGCAGAGCCA +
Preference number: 2 (lower is better)
Translates to: KKELVESQRGSSFRFLLPYYSAQ*ILQAEP
Trigger: TGGCTCTGCTTGCAATATCCACTGAGCACTGTAATA...AGGAAGGAGGAAACGAAAGCTAGAGCCTCTTTGTGACTCCACCAACTCCTTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp GAGACAAGAAGGAGTTGGTGGAGTCACAAAGAGGCTCTAGCTTTCGTTTCCTCCGAGAAGAGAACACTCTaGAATAGAACACGGAAATGT +
Preference number: 2 (lower is better)
Translates to: ETRRSWWSHKEALAFVSSEKRTL*NRTRKC
Trigger: ACATTTCCGTGTTCTATTCCAGAGTGTTCTCTTCTC...GGAGGAAACGAAAGCTAGAGCCTCTTTGTGACTCCACCAACTCCTTCTTGTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR CAA 90 bp GAACAAGGAAAAATGACACAGATGTCCACCTGTCATAAAAAGCTCTaGAGATCCAGGTGTTCCTGTCAGCAGCAATCATTGCAAGCTGGA +
Preference number: 2 (lower is better)
Translates to: EQGKMTQMSTCHKKL*RSRCSCQQQSLQAG
Trigger: TCCAGCTTGCAATGATTGCTGCTGACAGGAACACCTGGATCTCAAGAGCTTTTTATGACAGGTGGACATCTGTGTCATTTTTCCTTGTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR TCA 90 bp AAGAAGGAGTTGGTGGAGTCACAAAGAGGCTCTAGCTTTCGTTTCCTCCTTCCTTCCACCATTCTCCTTTaGACAGGGTATACTAATATG +
Preference number: 2 (lower is better)
Translates to: KKELVESQRGSSFRFLLPSTILL*TGYTNM
Trigger: CATATTAGTATACCCTGTTCAAAGGAGAATGGTGGA...AGGAAGGAGGAAACGAAAGCTAGAGCCTCTTTGTGACTCCACCAACTCCTTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR TCA 90 bp GACACTACACACGGCTATACTTCATCTTCTCTCCACATCCCTAAAGAAATGAGAGGGAACAAGGAAAAATaGCACAGATGTCCACCTGTC +
Preference number: 2 (lower is better)
Translates to: DTTHGYTSSSLHIPKEMRGNKEK*HRCPPV
Trigger: GACAGGTGGACATCTGTGTCATTTTTCCTTGTTCCC...TCTCATTTCTTTAGGGATGTGGAGAGAAGATGAAGTATAGCCGTGTGTAGTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp AGTATGTGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCATCGGTCACTTGTGAATaGCTTTGTTCTGTCCACAGA +
Preference number: 2 (lower is better)
Translates to: SMCADSSIKGDKKELVESSVTCE*LCSVHR
Trigger: TCTGTGGACAGAACAAAGCCATTCACAAGTGACCGA...TGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACACATACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp AAGAAGGAGTTGGTGGAGTCACAAAGAGGCTCTAGCTTTCGTTTCCTCCTTCCTGAGAAGAGAACACTCTaGAATAGAACACGGAAATGT +
Preference number: 2 (lower is better)
Translates to: KKELVESQRGSSFRFLLPEKRTL*NRTRKC
Trigger: ACATTTCCGTGTTCTATTCCAGAGTGTTCTCTTCTC...AGGAAGGAGGAAACGAAAGCTAGAGCCTCTTTGTGACTCCACCAACTCCTTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp GACACTACACACGGCTATACTTCATCTTCTCTCCACATCCCTAAAGAAATGAGAGAGACAAGAAGGAGTTaGTGGAGTCACAAAGAGGCT +
Preference number: 2 (lower is better)
Translates to: DTTHGYTSSSLHIPKEMRETRRS*WSHKEA
Trigger: AGCCTCTTTGTGACTCCACCAACTCCTTCTTGTCTC...TCTCATTTCTTTAGGGATGTGGAGAGAAGATGAAGTATAGCCGTGTGTAGTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp ACCCTTTATTACCCGACACAACCCATTTTACTTTTCAGCAGAAGAGACAAGAGAAAACTCCACCTTCTCTaGCGACACTACACACGGCTA +
Preference number: 2 (lower is better)
Translates to: TLYYPTQPILLFSRRDKRKLHLL*RHYTRL
Trigger: TAGCCGTGTGTAGTGTCGCCAGAGAAGGTGGAGTTT...TCTCTTGTCTCTTCTGCTGAAAAGTAAAATGGGTTGTGTCGGGTAATAAAGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR GCA 90 bp CAGTCCAATGACAGCACAAGAATGAAGTTGTGGAAAGTGACATCATTTAAAGCAGTGCTCAGTGGATATTaGAAGCAGAGCCATGTTGCC +
Preference number: 2 (lower is better)
Translates to: QSNDSTRMKLWKVTSFKAVLSGY*KQSHVA
Trigger: GGCAACATGGCTCTGCTTGCAATATCCACTGAGCAC...TGCTTTAAATGATGTCACTTTCCACAACTTCATTCTTGTGCTGTCATTGGACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp ACCCTTTATTACCCGACACAACCCATTTTACTTTTCAGCAGAAGAGACAAGAGAGAGACAAGAAGGAGTTaGTGGAGTCACAAAGAGGCT +
Preference number: 2 (lower is better)
Translates to: TLYYPTQPILLFSRRDKRETRRS*WSHKEA
Trigger: AGCCTCTTTGTGACTCCACCAACTCCTTCTTGTCTC...TCTCTTGTCTCTTCTGCTGAAAAGTAAAATGGGTTGTGTCGGGTAATAAAGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR TCA 90 bp ACCCTTTATTACCCGACACAACCCATTTTACTTTTCAGCAGAAGAGACAAGAGATTGTTGAATGTAGGCTaGCGAATGGATGGATGGATG +
Preference number: 2 (lower is better)
Translates to: TLYYPTQPILLFSRRDKRLLNVG*RMDGWM
Trigger: CATCCATCCATCCATTCGTCAGCCTACATTCAACAA...TCTCTTGTCTCTTCTGCTGAAAAGTAAAATGGGTTGTGTCGGGTAATAAAGGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR GCA 90 bp TGGATGGATGGATGGATGGATGGATGGATGGATGAGGGAACAAGGAAAAATGACTCAAATGTATTACAGTaGTCAGTGGATATTGCAAGC +
Preference number: 2 (lower is better)
Translates to: WMDGWMDGWMDEGTRKNDSNVLQ*SVDIAS
Trigger: GCTTGCAATATCCACTGAGCACTGTAATACATTTGA...GTCATTTTTCCTTGTTCCCTCATCCATCCATCCATCCATCCATCCATCCATCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR GCA 90 bp ACCCTTTATTACCCGACACAACCCATTTTACTTTTCAGCAGAAGAGACAAGAGAAGAAAGAATCTGTCTTaGTTCCCTCGTGTCTGTCAG +
Preference number: 2 (lower is better)
Translates to: TLYYPTQPILLFSRRDKRRKNLS*FPRVCQ
Trigger: CTGACAGACACGAGGGAAGCAAGACAGATTCTTTCT...TCTCTTGTCTCTTCTGCTGAAAAGTAAAATGGGTTGTGTCGGGTAATAAAGGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR GCA 90 bp ACCCTTTATTACCCGACACAACCCATTTTACTTTTCAGCAGAAGAGACAAGAGAAGGGGTGAGTATGTGTaGGGACTCTTCAATAAAAGG +
Preference number: 2 (lower is better)
Translates to: TLYYPTQPILLFSRRDKRRGEYV*GLFNKR
Trigger: CCTTTTATTGAAGAGTCCGCACACATACTCACCCCT...TCTCTTGTCTCTTCTGCTGAAAAGTAAAATGGGTTGTGTCGGGTAATAAAGGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR GCA 90 bp CAGTCCAATGACAGCACAAGAATGAAGTTGTGGAAAGTGACATCATTTAAAGCAGACCCAGGAATTGAATaGAGGTCATCAGGTTTGGCT +
Preference number: 2 (lower is better)
Translates to: QSNDSTRMKLWKVTSFKADPGIE*RSSGLA
Trigger: AGCCAAACCTGATGACCTGCATTCAATTCCTGGGTC...TGCTTTAAATGATGTCACTTTCCACAACTTCATTCTTGTGCTGTCATTGGACTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp TCTTGCTTCCCTCGTGTCTGTCAGCATGTGTCTGGGGGAATCATAGACATTCAAACTAATATGAGTATCTaGCACAGAGATCTGATACAT +
Preference number: 2 (lower is better)
Translates to: SCFPRVCQHVSGGIIDIQTNMSI*HRDLIH
Trigger: ATGTATCAGATCTCTGTGCCAGATACTCATATTAGT...TTGAATGTCTATGATTCCCCCAGACACATGCTGACAGACACGAGGGAAGCAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp ATTTACAGTAAAGAGGTGACCAACAATGGGCATGTAAACTTCTCCAGAAAAAGACGTTCCAGTGTTCTCTaGGAGAAGAGAACACTCTGG +
Preference number: 2 (lower is better)
Translates to: IYSKEVTNNGHVNFSRKRRSSVL*EKRTLW
Trigger: CCAGAGTGTTCTCTTCTCCCAGAGAACACTGGAACG...TCTTTTTCTGGAGAAGTTTACATGCCCATTGTTGGTCACCTCTTTACTGTAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR TCA 90 bp GACACTACACACGGCTATACTTCATCTTCTCTCCACATCCCTAAAGAAATGAGATCCACCATTCTCCTTTaGACAGGGTATACTAATATG +
Preference number: 2 (lower is better)
Translates to: DTTHGYTSSSLHIPKEMRSTILL*TGYTNM
Trigger: CATATTAGTATACCCTGTTCAAAGGAGAATGGTGGA...TCTCATTTCTTTAGGGATGTGGAGAGAAGATGAAGTATAGCCGTGTGTAGTGTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR GCA 90 bp AGTATGTGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCATCAAATGTATTACAGTaGTCAGTGGATATTGCAAGC +
Preference number: 2 (lower is better)
Translates to: SMCADSSIKGDKKELVESSNVLQ*SVDIAS
Trigger: GCTTGCAATATCCACTGAGCACTGTAATACATTTGA...TGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACACATACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp TGGATGGATGGATGGATGGATGGATGGATGGATGAGGGAACAAGGAAAAATGACACTAATATGAGTATCTaGCACAGAGATCTGATACAT +
Preference number: 2 (lower is better)
Translates to: WMDGWMDGWMDEGTRKNDTNMSI*HRDLIH
Trigger: ATGTATCAGATCTCTGTGCCAGATACTCATATTAGT...GTCATTTTTCCTTGTTCCCTCATCCATCCATCCATCCATCCATCCATCCATCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR GCA 90 bp CAGTCCAATGACAGCACAAGAATGAAGTTGTGGAAAGTGACATCATTTAAAGCAAACCATCCTAAGGCTTaGTACATCATCTGCAAGATG +
Preference number: 2 (lower is better)
Translates to: QSNDSTRMKLWKVTSFKANHPKA*YIICKM
Trigger: CATCTTGCAGATGATGTAGCAAGCCTTAGGATGGTT...TGCTTTAAATGATGTCACTTTCCACAACTTCATTCTTGTGCTGTCATTGGACTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp ACCCTTTATTACCCGACACAACCCATTTTACTTTTCAGCAGAAGAGACAAGAGAACTAATATGAGTATCTaGCACAGAGATCTGATACAT +
Preference number: 2 (lower is better)
Translates to: TLYYPTQPILLFSRRDKRTNMSI*HRDLIH
Trigger: ATGTATCAGATCTCTGTGCCAGATACTCATATTAGT...TCTCTTGTCTCTTCTGCTGAAAAGTAAAATGGGTTGTGTCGGGTAATAAAGGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR TCA 90 bp ATTTACAGTAAAGAGGTGACCAACAATGGGCATGTAAACTTCTCCAGAAAAAGAGAGTTTTACACGAAGTaGTTCCCTTTAAAGATGCAT +
Preference number: 2 (lower is better)
Translates to: IYSKEVTNNGHVNFSRKREFYTK*FPLKMH
Trigger: ATGCATCTTTAAAGGGAATCACTTCGTGTAAAACTC...TCTTTTTCTGGAGAAGTTTACATGCCCATTGTTGGTCACCTCTTTACTGTAAAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp ATTTACAGTAAAGAGGTGACCAACAATGGGCATGTAAACTTCTCCAGAAAAAGAAAGACCAGAGTCTCTTaGAAAAGAAAGCTCTTCTTT +
Preference number: 2 (lower is better)
Translates to: IYSKEVTNNGHVNFSRKRKTRVS*KRKLFF
Trigger: AAAGAAGAGCTTTCTTTTCCAAGAGACTCTGGTCTT...TCTTTTTCTGGAGAAGTTTACATGCCCATTGTTGGTCACCTCTTTACTGTAAAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp GATTTCCTCAGACAGTATTATCCACCATTCTCCTTTGAACAGGGTATACTAATAAAGACCAGAGTCTCTTaGAAAAGAAAGCTCTTCTTT +
Preference number: 2 (lower is better)
Translates to: DFLRQYYPPFSFEQGILIKTRVS*KRKLFF
Trigger: AAAGAAGAGCTTTCTTTTCCAAGAGACTCTGGTCTT...TATTAGTATACCCTGTTCAAAGGAGAATGGTGGATAATACTGTCTGAGGAAATC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CCA 90 bp ATTTACAGTAAAGAGGTGACCAACAATGGGCATGTAAACTTCTCCAGAAAAAGATGTCAGTCAAATGCTTaGACACTGAACTTACATAGT +
Preference number: 2 (lower is better)
Translates to: IYSKEVTNNGHVNFSRKRCQSNA*TLNLHS
Trigger: ACTATGTAAGTTCAGTGTCCAAGCATTTGACTGACA...TCTTTTTCTGGAGAAGTTTACATGCCCATTGTTGGTCACCTCTTTACTGTAAAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR GCA 72 bp ACGGAAATGTCCGGCATCCCTGAGGCATCCTCTTCCTaGAGCCACCTCCCGTCTCACGGCACGTGCTGTCGG +
Preference number: 3 (lower is better)
Translates to: TEMSGIPEASSS*SHLPSHGTCCR
Trigger: CCGACAGCACGTGCCGTGAGACGGGAGGTGGCTGCAGGAAGAGGATGCCTCAGGGATGCCGGACATTTCCGT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR TCA 72 bp ATGGGGCGGGGGAGTGCCCAGGCACAAGGACCTGTGTaGGGAGGTTTGAGCGTTCCTTTCAGTAGTGGACTC +
Preference number: 3 (lower is better)
Translates to: MGRGSAQAQGPV*GGLSVPFSSGL
Trigger: GAGTCCACTACTGAAAGGAACGCTCAAACCTCCTCACACAGGTCCTTGTGCCTGGGCACTCCCCCGCCCCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CAA 90 bp ATGTGTGTATGCATATGGGGCGGGGGAGTGCCCAGGCACAAGGACCTGTGTGAGTGCAGGTCATCAGGTTaGGCTGCAAGCACCCTCACC +
Preference number: 3 (lower is better)
Translates to: MCVCIWGGGVPRHKDLCECRSSG*AASTLT
Trigger: GGTGAGGGTGCTTGCAGCCAAACCTGATGACCTGCA...CTCACACAGGTCCTTGTGCCTGGGCACTCCCCCGCCCCATATGCATACACACAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR TCA 72 bp GGAGTGCCCAGGCACAAGGACCTGTGTGAGGAGGTTTaGGCGTTCCTTTCAGTAGTGGACTCTCTCCCTCTG +
Preference number: 3 (lower is better)
Translates to: GVPRHKDLCEEV*AFLSVVDSLPL
Trigger: CAGAGGGAGAGAGTCCACTACTGAAAGGAACGCTCAAACCTCCTCACACAGGTCCTTGTGCCTGGGCACTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR TCA 72 bp ACCTCCCGTCTCACGGCACGTGCTGTCGGTCACTTGTaGATGGCTTTGTTCTGTCCACAGAACTGCAGACAC +
Preference number: 3 (lower is better)
Translates to: TSRLTARAVGHL*MALFCPQNCRH
Trigger: GTGTCTGCAGTTCTGTGGACAGAACAAAGCCATTCACAAGTGACCGACAGCACGTGCCGTGAGACGGGAGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR CCA 72 bp GCTTGCTACATCATCTGCAAGATGCAGGTCCTCATGTaGCCCACCAGAGGGGTGAGTATGTGTGCGGACTCT +
Preference number: 3 (lower is better)
Translates to: ACYIICKMQVLM*PTRGVSMCADS
Trigger: AGAGTCCGCACACATACTCACCCCTCTGGTGGGCCACATGAGGACCTGCATCTTGCAGATGATGTAGCAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR CCA 72 bp CGTGGGACCCAGGAATTGAATGCAGGTCATCAGGTTTaGCTGCAAGCACCCTCACCTACTGAGTCCCAACCT +
Preference number: 3 (lower is better)
Translates to: RGTQELNAGHQV*LQAPSPTESQP
Trigger: AGGTTGGGACTCAGTAGGTGAGGGTGCTTGCAGCCAAACCTGATGACCTGCATTCAATTCCTGGGTCCCACG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR CCA 72 bp CCCGTCTCACGGCACGTGCTGTCGGTCACTTGTGAATaGCTTTGTTCTGTCCACAGAACTGCAGACACAAGT +
Preference number: 3 (lower is better)
Translates to: PVSRHVLSVTCE*LCSVHRTADTS
Trigger: ACTTGTGTCTGCAGTTCTGTGGACAGAACAAAGCCATTCACAAGTGACCGACAGCACGTGCCGTGAGACGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CAA 90 bp TCTGTCCCGTGGGACCCAGGAATTGAATGCAGGTCATCAGGTTTGGCTGCAAGCAGTGCTCAGTGGATATaGCAAGCAGAGCCATGTTGC +
Preference number: 3 (lower is better)
Translates to: SVPWDPGIECRSSGLAASSAQWI*QAEPCC
Trigger: GCAACATGGCTCTGCTTGCAATATCCACTGAGCACT...GCTTGCAGCCAAACCTGATGACCTGCATTCAATTCCTGGGTCCCACGGGACAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR CCA 72 bp GGACGTTCCAGTGTTCTCTGGGAGAAGAGAACACTCTaGAATAGAACACGGAAATGTCCGGCATCCCTGAGG +
Preference number: 3 (lower is better)
Translates to: GRSSVLWEKRTL*NRTRKCPASLR
Trigger: CCTCAGGGATGCCGGACATTTCCGTGTTCTATTCCAGAGTGTTCTCTTCTCCCAGAGAACACTGGAACGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CAA 90 bp TCTTGCTTCCCTCGTGTCTGTCAGCATGTGTCTGGGGGAATCATAGACATTCAAGCAAGCAGAGCCATGTaGCCAGATCCTCACGGTTCC +
Preference number: 3 (lower is better)
Translates to: SCFPRVCQHVSGGIIDIQASRAM*PDPHGS
Trigger: GGAACCGTGAGGATCTGGCAACATGGCTCTGCTTGC...TTGAATGTCTATGATTCCCCCAGACACATGCTGACAGACACGAGGGAAGCAAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CAA 90 bp ATGTGTGTATGCATATGGGGCGGGGGAGTGCCCAGGCACAAGGACCTGTGTGAGAGAGATCTGATACATTaGAATTTATCACCGACCACC +
Preference number: 3 (lower is better)
Translates to: MCVCIWGGGVPRHKDLCERDLIH*NLSPTT
Trigger: GGTGGTCGGTGATAAATTCAAATGTATCAGATCTCT...CTCACACAGGTCCTTGTGCCTGGGCACTCCCCCGCCCCATATGCATACACACAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR GCA 72 bp GGTCCTCATGTGGCCCACCAGAGGGGTGAGTATGTGTaGGGACTCTTCAATAAAAGGAGACAAGAAGGAGTT +
Preference number: 3 (lower is better)
Translates to: GPHVAHQRGEYV*GLFNKRRQEGV
Trigger: AACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACACATACTCACCCCTCTGGTGGGCCACATGAGGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR CCA 72 bp CACAGGTTCCAGACCCACACAGTAGCACCTTTCCTGTaGGAAAGAAAGAATTCCTTCATCCCTGTGAGGACG +
Preference number: 3 (lower is better)
Translates to: HRFQTHTVAPFL*ERKNSFIPVRT
Trigger: CGTCCTCACAGGGATGAAGGAATTCTTTCTTTCCCACAGGAAAGGTGCTACTGTGTGGGTCTGGAACCTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CAA 90 bp GAGACAAGAAGGAGTTGGTGGAGTCACAAAGAGGCTCTAGCTTTCGTTTCCTCCCAAGACCAGAGTCTCTaGGAAAAGAAAGCTCTTCTT +
Preference number: 3 (lower is better)
Translates to: ETRRSWWSHKEALAFVSSQDQSL*EKKALL
Trigger: AAGAAGAGCTTTCTTTTCCAAGAGACTCTGGTCTTG...GGAGGAAACGAAAGCTAGAGCCTCTTTGTGACTCCACCAACTCCTTCTTGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR TCA 72 bp TTTGTTCTGTCCACAGAACTGCAGACACAAGTAAACTaGAGATGTCGGTGTTCACAAGACCCGTGCGTGATG +
Preference number: 3 (lower is better)
Translates to: FVLSTELQTQVN*RCRCSQDPCVM
Trigger: CATCACGCACGGGTCTTGTGAACACCGACATCTTCAGTTTACTTGTGTCTGCAGTTCTGTGGACAGAACAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR TCA 72 bp CTTTCCTGTGGGAAAGAAAGAATTCCTTCATCCCTGTaGGGACGTTCCAGTGTTCTCTGGGAGAAGAGAACA +
Preference number: 3 (lower is better)
Translates to: LSCGKERIPSSL*GRSSVLWEKRT
Trigger: TGTTCTCTTCTCCCAGAGAACACTGGAACGTCCTCACAGGGATGAAGGAATTCTTTCTTTCCCACAGGAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR GCA 72 bp CATCCTGTCAAATGTATTACAGTGCTCAGTGGATATTaGAAGCAGAGCCATGTTGCCAGATCCTCACGGTTC +
Preference number: 3 (lower is better)
Translates to: HPVKCITVLSGY*KQSHVARSSRF
Trigger: GAACCGTGAGGATCTGGCAACATGGCTCTGCTTGCAATATCCACTGAGCACTGTAATACATTTGACAGGATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR CCA 72 bp ATGCAGCCATCCTGTCAAATGTATTACAGTGCTCAGTaGATATTGCAAGCAGAGCCATGTTGCCAGATCCTC +
Preference number: 3 (lower is better)
Translates to: MQPSCQMYYSAQ*ILQAEPCCQIL
Trigger: GAGGATCTGGCAACATGGCTCTGCTTGCAATATCCACTGAGCACTGTAATACATTTGACAGGATGGCTGCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR CCA 72 bp CTGACGAATGGATGGATGGATGGATGGATGGATGGATaGATGGATGGATGGATGAGGGAACAAGGAAAAATG +
Preference number: 3 (lower is better)
Translates to: LTNGWMDGWMDG*MDGWMREQGKM
Trigger: CATTTTTCCTTGTTCCCTCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATTCGTCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CAA 90 bp TCTTGCTTCCCTCGTGTCTGTCAGCATGTGTCTGGGGGAATCATAGACATTCAACAAGACCAGAGTCTCTaGGAAAAGAAAGCTCTTCTT +
Preference number: 3 (lower is better)
Translates to: SCFPRVCQHVSGGIIDIQQDQSL*EKKALL
Trigger: AAGAAGAGCTTTCTTTTCCAAGAGACTCTGGTCTTG...TTGAATGTCTATGATTCCCCCAGACACATGCTGACAGACACGAGGGAAGCAAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CAA 90 bp ATTTACAGTAAAGAGGTGACCAACAATGGGCATGTAAACTTCTCCAGAAAAAGAGCAAGCAGAGCCATGTaGCCAGATCCTCACGGTTCC +
Preference number: 3 (lower is better)
Translates to: IYSKEVTNNGHVNFSRKRASRAM*PDPHGS
Trigger: GGAACCGTGAGGATCTGGCAACATGGCTCTGCTTGC...TCTTTTTCTGGAGAAGTTTACATGCCCATTGTTGGTCACCTCTTTACTGTAAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR GCA 72 bp CAGTTTCATGCAGCCATCCTGTCAAATGTATTACAGTaGTCAGTGGATATTGCAAGCAGAGCCATGTTGCCA +
Preference number: 3 (lower is better)
Translates to: QFHAAILSNVLQ*SVDIASRAMLP
Trigger: TGGCAACATGGCTCTGCTTGCAATATCCACTGAGCACTGTAATACATTTGACAGGATGGCTGCATGAAACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR GCA 72 bp ATTTGCTTCCTACTGATCATGAACCATCCTAAGGCTTaGTACATCATCTGCAAGATGCAGGTCCTCATGTGG +
Preference number: 3 (lower is better)
Translates to: ICFLLIMNHPKA*YIICKMQVLMW
Trigger: CCACATGAGGACCTGCATCTTGCAGATGATGTAGCAAGCCTTAGGATGGTTCATGATCAGTAGGAAGCAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR CCA 72 bp TGGATGGATGGATGGATGGATGGATGGATGGATGGATaGATGGATGAGGGAACAAGGAAAAATGACACAGAT +
Preference number: 3 (lower is better)
Translates to: WMDGWMDGWMDG*MDEGTRKNDTD
Trigger: ATCTGTGTCATTTTTCCTTGTTCCCTCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CAA 90 bp ACCCTTTATTACCCGACACAACCCATTTTACTTTTCAGCAGAAGAGACAAGAGAAGTGCTCAGTGGATATaGCAAGCAGAGCCATGTTGC +
Preference number: 3 (lower is better)
Translates to: TLYYPTQPILLFSRRDKRSAQWI*QAEPCC
Trigger: GCAACATGGCTCTGCTTGCAATATCCACTGAGCACT...TCTCTTGTCTCTTCTGCTGAAAAGTAAAATGGGTTGTGTCGGGTAATAAAGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CAA 90 bp AGTATGTGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCACAAGACCAGAGTCTCTaGGAAAAGAAAGCTCTTCTT +
Preference number: 3 (lower is better)
Translates to: SMCADSSIKGDKKELVESQDQSL*EKKALL
Trigger: AAGAAGAGCTTTCTTTTCCAAGAGACTCTGGTCTTG...TGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACACATACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR CCA 72 bp AATAACACTGAGACCATTCTTAAACTCCACCTTCTCTaGCGACACTACACACGGCTATACTTCATCTTCTCT +
Preference number: 3 (lower is better)
Translates to: NNTETILKLHLL*RHYTRLYFIFS
Trigger: AGAGAAGATGAAGTATAGCCGTGTGTAGTGTCGCCAGAGAAGGTGGAGTTTAAGAATGGTCTCAGTGTTATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CAA 90 bp ATTTACAGTAAAGAGGTGACCAACAATGGGCATGTAAACTTCTCCAGAAAAAGAAGTGCTCAGTGGATATaGCAAGCAGAGCCATGTTGC +
Preference number: 3 (lower is better)
Translates to: IYSKEVTNNGHVNFSRKRSAQWI*QAEPCC
Trigger: GCAACATGGCTCTGCTTGCAATATCCACTGAGCACT...TCTTTTTCTGGAGAAGTTTACATGCCCATTGTTGGTCACCTCTTTACTGTAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR-3UTR CAA 90 bp GACACTACACACGGCTATACTTCATCTTCTCTCCACATCCCTAAAGAAATGAGAAGAGATCTGATACATTaGAATTTATCACCGACCACC +
Preference number: 3 (lower is better)
Translates to: DTTHGYTSSSLHIPKEMRRDLIH*NLSPTT
Trigger: GGTGGTCGGTGATAAATTCAAATGTATCAGATCTCT...TCTCATTTCTTTAGGGATGTGGAGAGAAGATGAAGTATAGCCGTGTGTAGTGTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR TCA 72 bp GAATGTGGAACGAGAGCTTCCTTCTCAAATAAGTTCTaGTTTCCTCAGACAGTATTATCCACCATTCTCCTT +
Preference number: 3 (lower is better)
Translates to: ECGTRASFSNKF*FPQTVLSTILL
Trigger: AAGGAGAATGGTGGATAATACTGTCTGAGGAAATCAGAACTTATTTGAGAAGGAAGCTCTCGTTCCACATTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR CCA 72 bp AACATTCAGTCCAATGACAGCACAAGAATGAAGTTGTaGAAAGTGACATCATTTAAAGCATGTGGGGTTTTT +
Preference number: 3 (lower is better)
Translates to: NIQSNDSTRMKL*KVTSFKACGVF
Trigger: AAAAACCCCACATGCTTTAAATGATGTCACTTTCCACAACTTCATTCTTGTGCTGTCATTGGACTGAATGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR TCA 72 bp TTTTCAGCAGAAGAGACAAGAGAGTTTTACACGAAGTaGTTCCCTTTAAAGATGCATAACATTCAGTCCAAT +
Preference number: 3 (lower is better)
Translates to: FSAEETREFYTK*FPLKMHNIQSN
Trigger: ATTGGACTGAATGTTATGCATCTTTAAAGGGAATCACTTCGTGTAAAACTCTCTTGTCTCTTCTGCTGAAAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS-3UTR CCA 90 bp TCTGTCCCGTGGGACCCAGGAATTGAATGCAGGTCATCAGGTTTGGCTGCAAGCGAGGTTGTGGGGAGGTaGGGGCTTCAGAGCCGTGGT +
Preference number: 4 (lower is better)
Translates to: SVPWDPGIECRSSGLAASEVVGR*GLQSRG
Trigger: ACCACGGCTCTGAAGCCCCCACCTCCCCACAACCTC...GCTTGCAGCCAAACCTGATGACCTGCATTCAATTCCTGGGTCCCACGGGACAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069958.15
CDS-3UTR TCA 90 bp ATGTGTGTATGCATATGGGGCGGGGGAGTGCCCAGGCACAAGGACCTGTGTGAGGGCTTTTCCCGTCGATaGAAGATGAGCACACTTGAG +
Preference number: 4 (lower is better)
Translates to: MCVCIWGGGVPRHKDLCEGFSRR*KMSTLE
Trigger: CTCAAGTGTGCTCATCTTTCATCGACGGGAAAAGCC...CTCACACAGGTCCTTGTGCCTGGGCACTCCCCCGCCCCATATGCATACACACAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000069958.15
CDS-3UTR CCA 90 bp GAGACAAGAAGGAGTTGGTGGAGTCACAAAGAGGCTCTAGCTTTCGTTTCCTCCCGTCCAGGATGCGTTTaGTGGCATGGAGCCAGGGAC +
Preference number: 4 (lower is better)
Translates to: ETRRSWWSHKEALAFVSSRPGCV*WHGARD
Trigger: GTCCCTGGCTCCATGCCACCAAACGCATCCTGGACG...GGAGGAAACGAAAGCTAGAGCCTCTTTGTGACTCCACCAACTCCTTCTTGTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS-3UTR CCA 90 bp AACAATCAGCCCCCTATGTTTTTCTCTGAGCACAGGAGCACAAGAACCTCTTTTCAGCCACAGGCAGGGTaGCCCCAGAGCGGGAGACCT +
Preference number: 4 (lower is better)
Translates to: NNQPPMFFSEHRSTRTSFQPQAG*PQSGRP
Trigger: AGGTCTCCCGCTCTGGGGCCACCCTGCCTGTGGCTG...AAAAGAGGTTCTTGTGCTCCTGTGCTCAGAGAAAAACATAGGGGGCTGATTGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000223570.2
ENSMUST00000225759.2
CDS-3UTR GCA 90 bp ATGTGTGTATGCATATGGGGCGGGGGAGTGCCCAGGCACAAGGACCTGTGTGAGTTGAGGCATGAAGATTaGCCTGAAGAGCCTTGCAAA +
Preference number: 4 (lower is better)
Translates to: MCVCIWGGGVPRHKDLCELRHED*PEEPCK
Trigger: TTTGCAAGGCTCTTCAGGGCAATCTTCATGCCTCAA...CTCACACAGGTCCTTGTGCCTGGGCACTCCCCCGCCCCATATGCATACACACAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000069958.15
CDS-3UTR CCA 90 bp AAGAAGGAGTTGGTGGAGTCACAAAGAGGCTCTAGCTTTCGTTTCCTCCTTCCTCGTCCAGGATGCGTTTaGTGGCATGGAGCCAGGGAC +
Preference number: 4 (lower is better)
Translates to: KKELVESQRGSSFRFLLPRPGCV*WHGARD
Trigger: GTCCCTGGCTCCATGCCACCAAACGCATCCTGGACG...AGGAAGGAGGAAACGAAAGCTAGAGCCTCTTTGTGACTCCACCAACTCCTTCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS-3UTR CCA 90 bp GAGACAAGAAGGAGTTGGTGGAGTCACAAAGAGGCTCTAGCTTTCGTTTCCTCCATGCGTTTGGTGGCATaGAGCCAGGGACTCCTGGAA +
Preference number: 4 (lower is better)
Translates to: ETRRSWWSHKEALAFVSSMRLVA*SQGLLE
Trigger: TTCCAGGAGTCCCTGGCTCCATGCCACCAAACGCAT...GGAGGAAACGAAAGCTAGAGCCTCTTTGTGACTCCACCAACTCCTTCTTGTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
CDS-3UTR CCA 90 bp TGGATGGATGGATGGATGGATGGATGGATGGATGAGGGAACAAGGAAAAATGACCGTCCAGGATGCGTTTaGTGGCATGGAGCCAGGGAC +
Preference number: 4 (lower is better)
Translates to: WMDGWMDGWMDEGTRKNDRPGCV*WHGARD
Trigger: GTCCCTGGCTCCATGCCACCAAACGCATCCTGGACG...GTCATTTTTCCTTGTTCCCTCATCCATCCATCCATCCATCCATCCATCCATCCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS-3UTR CCA 90 bp TCTGTCCCGTGGGACCCAGGAATTGAATGCAGGTCATCAGGTTTGGCTGCAAGCAGGCCAGGAAGGCATTaGGGAAACAGCTTAGTAACT +
Preference number: 4 (lower is better)
Translates to: SVPWDPGIECRSSGLAASRPGRH*GNSLVT
Trigger: AGTTACTAAGCTGTTTCCCCAATGCCTTCCTGGCCT...GCTTGCAGCCAAACCTGATGACCTGCATTCAATTCCTGGGTCCCACGGGACAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067778.8
ENSMUST00000110191.10
CDS-3UTR CCA 90 bp ATGTGTGTATGCATATGGGGCGGGGGAGTGCCCAGGCACAAGGACCTGTGTGAGCTAAGACTGAAATATTaGAAACCGCCCTCGGGAAAT +
Preference number: 4 (lower is better)
Translates to: MCVCIWGGGVPRHKDLCELRLKY*KPPSGN
Trigger: ATTTCCCGAGGGCGGTTTCCAATATTTCAGTCTTAG...CTCACACAGGTCCTTGTGCCTGGGCACTCCCCCGCCCCATATGCATACACACAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS-3UTR CCA 90 bp AACAATCAGCCCCCTATGTTTTTCTCTGAGCACAGGAGCACAAGAACCTCTTTTCGTCCAGGATGCGTTTaGTGGCATGGAGCCAGGGAC +
Preference number: 4 (lower is better)
Translates to: NNQPPMFFSEHRSTRTSFRPGCV*WHGARD
Trigger: GTCCCTGGCTCCATGCCACCAAACGCATCCTGGACG...AAAAGAGGTTCTTGTGCTCCTGTGCTCAGAGAAAAACATAGGGGGCTGATTGTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000225759.2
3UTR CAA 72 bp CTCTTGAGATCCAGGTGTTCCTGTCAGCAGCAATCATaGCAAGCTGGAAGCTGTCCTGATGCCGCTAAAGCT +
Preference number: 4 (lower is better)
Translates to: LLRSRCSCQQQS*QAGSCPDAAKA
Trigger: AGCTTTAGCGGCATCAGGACAGCTTCCAGCTTGCAATGATTGCTGCTGACAGGAACACCTGGATCTCAAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR CAA 72 bp ACTCCCCAGAGTTTAACAGTGGAGAAAGAATCTGTCTaGCTTCCCTCGTGTCTGTCAGCATGTGTCTGGGGG +
Preference number: 4 (lower is better)
Translates to: TPQSLTVEKESV*LPSCLSACVWG
Trigger: CCCCCAGACACATGCTGACAGACACGAGGGAAGCAAGACAGATTCTTTCTCCACTGTTAAACTCTGGGGAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS-3UTR TCA 90 bp GAGACAAGAAGGAGTTGGTGGAGTCACAAAGAGGCTCTAGCTTTCGTTTCCTCCAAAGATGAGCACACTTaGGCCAGCATCACCGAGTCT +
Preference number: 4 (lower is better)
Translates to: ETRRSWWSHKEALAFVSSKDEHT*ASITES
Trigger: AGACTCGGTGATGCTGGCTCAAGTGTGCTCATCTTT...GGAGGAAACGAAAGCTAGAGCCTCTTTGTGACTCCACCAACTCCTTCTTGTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069958.15
CDS-3UTR TCA 90 bp TCTTGCTTCCCTCGTGTCTGTCAGCATGTGTCTGGGGGAATCATAGACATTCAAAGGTGGACAGGTCTTTaGTGCAGTTCAGGTCAGCCT +
Preference number: 4 (lower is better)
Translates to: SCFPRVCQHVSGGIIDIQRWTGL*CSSGQP
Trigger: AGGCTGACCTGAACTGCATCAAAGACCTGTCCACCT...TTGAATGTCTATGATTCCCCCAGACACATGCTGACAGACACGAGGGAAGCAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000069958.15
CDS-3UTR TCA 90 bp TGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCACAAAGACCTGCCCGCAGGTGTTaGGGACATATTTCCAGGGGA +
Preference number: 4 (lower is better)
Translates to: CADSSIKGDKKELVESQRPARRC*GHISRG
Trigger: TCCCCTGGAAATATGTCCTCAACACCTGCGGGCAGG...TCTTTGTGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067778.8
ENSMUST00000110191.10
CDS-3UTR TCA 90 bp AACAATCAGCCCCCTATGTTTTTCTCTGAGCACAGGAGCACAAGAACCTCTTTTCCTGCCCGCAGGTGTTaGGGACATATTTCCAGGGGA +
Preference number: 4 (lower is better)
Translates to: NNQPPMFFSEHRSTRTSFPARRC*GHISRG
Trigger: TCCCCTGGAAATATGTCCTCAACACCTGCGGGCAGG...AAAAGAGGTTCTTGTGCTCCTGTGCTCAGAGAAAAACATAGGGGGCTGATTGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000225759.2
CDS-3UTR CCA 90 bp TGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCACAAAGAGCTGCTGGTAGAGGTTaGGCAGGCTTAGCTGGCTGT +
Preference number: 4 (lower is better)
Translates to: CADSSIKGDKKELVESQRAAGRG*AGLAGC
Trigger: ACAGCCAGCTAAGCCTGCCCAACCTCTACCAGCAGC...TCTTTGTGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067778.8
CDS-3UTR CCA 90 bp AACAATCAGCCCCCTATGTTTTTCTCTGAGCACAGGAGCACAAGAACCTCTTTTGCTGCTGGTAGAGGTTaGGCAGGCTTAGCTGGCTGT +
Preference number: 4 (lower is better)
Translates to: NNQPPMFFSEHRSTRTSFAAGRG*AGLAGC
Trigger: ACAGCCAGCTAAGCCTGCCCAACCTCTACCAGCAGC...AAAAGAGGTTCTTGTGCTCCTGTGCTCAGAGAAAAACATAGGGGGCTGATTGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000225759.2
CDS-3UTR CCA 90 bp TTAAACAATCAGCCCCCTATGTTTTTCTCTGAGCACAGGAGCACAAGAACCTCTCGGGAGACCTTACCATaGCAGCCTCCATGCTTCGCT +
Preference number: 4 (lower is better)
Translates to: LNNQPPMFFSEHRSTRTSRETLP*QPPCFA
Trigger: AGCGAAGCATGGAGGCTGCCATGGTAAGGTCTCCCG...AGAGGTTCTTGTGCTCCTGTGCTCAGAGAAAAACATAGGGGGCTGATTGTTTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000223570.2
CDS-3UTR CCA 90 bp AACAATCAGCCCCCTATGTTTTTCTCTGAGCACAGGAGCACAAGAACCTCTTTTCGGGAGACCTTACCATaGCAGCCTCCATGCTTCGCT +
Preference number: 4 (lower is better)
Translates to: NNQPPMFFSEHRSTRTSFRETLP*QPPCFA
Trigger: AGCGAAGCATGGAGGCTGCCATGGTAAGGTCTCCCG...AAAAGAGGTTCTTGTGCTCCTGTGCTCAGAGAAAAACATAGGGGGCTGATTGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000223570.2
ENSMUST00000225759.2
CDS-3UTR TCA 90 bp AAGAAGGAGTTGGTGGAGTCACAAAGAGGCTCTAGCTTTCGTTTCCTCCTTCCTCGATCTCACTCTGGTTaGGTGTTCTTTCTCGAAGCC +
Preference number: 4 (lower is better)
Translates to: KKELVESQRGSSFRFLLPRSHSG*VFFLEA
Trigger: GGCTTCGAGAAAGAACACTCAACCAGAGTGAGATCG...AGGAAGGAGGAAACGAAAGCTAGAGCCTCTTTGTGACTCCACCAACTCCTTCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS-3UTR TCA 90 bp GACACTACACACGGCTATACTTCATCTTCTCTCCACATCCCTAAAGAAATGAGACCTGCCCGCAGGTGTTaGGGACATATTTCCAGGGGA +
Preference number: 4 (lower is better)
Translates to: DTTHGYTSSSLHIPKEMRPARRC*GHISRG
Trigger: TCCCCTGGAAATATGTCCTCAACACCTGCGGGCAGG...TCTCATTTCTTTAGGGATGTGGAGAGAAGATGAAGTATAGCCGTGTGTAGTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067778.8
ENSMUST00000110191.10
CDS-3UTR CCA 90 bp ATTTACAGTAAAGAGGTGACCAACAATGGGCATGTAAACTTCTCCAGAAAAAGAGTCCTTCCAATGGCGTaGGCTGGAGGCAGCACCCCG +
Preference number: 4 (lower is better)
Translates to: IYSKEVTNNGHVNFSRKRVLPMA*AGGSTP
Trigger: CGGGGTGCTGCCTCCAGCCCACGCCATTGGAAGGAC...TCTTTTTCTGGAGAAGTTTACATGCCCATTGTTGGTCACCTCTTTACTGTAAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000069958.15
CDS-3UTR CCA 90 bp AGTATGTGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCAATGCGTTTGGTGGCATaGAGCCAGGGACTCCTGGAA +
Preference number: 4 (lower is better)
Translates to: SMCADSSIKGDKKELVESMRLVA*SQGLLE
Trigger: TTCCAGGAGTCCCTGGCTCCATGCCACCAAACGCAT...TGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACACATACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
CDS-3UTR CCA 90 bp GACACTACACACGGCTATACTTCATCTTCTCTCCACATCCCTAAAGAAATGAGAATGCGTTTGGTGGCATaGAGCCAGGGACTCCAGGGA +
Preference number: 4 (lower is better)
Translates to: DTTHGYTSSSLHIPKEMRMRLVA*SQGLQG
Trigger: TCCCTGGAGTCCCTGGCTCCATGCCACCAAACGCAT...TCTCATTTCTTTAGGGATGTGGAGAGAAGATGAAGTATAGCCGTGTGTAGTGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS-3UTR TCA 90 bp TCTTGCTTCCCTCGTGTCTGTCAGCATGTGTCTGGGGGAATCATAGACATTCAAGAGATAAAGGGGCAGTaGTATAGTGGCTTTGGGTCA +
Preference number: 4 (lower is better)
Translates to: SCFPRVCQHVSGGIIDIQEIKGQ*YSGFGS
Trigger: TGACCCAAAGCCACTATATCACTGCCCCTTTATCTC...TTGAATGTCTATGATTCCCCCAGACACATGCTGACAGACACGAGGGAAGCAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000069958.15
CDS-3UTR TCA 90 bp TGGATGGATGGATGGATGGATGGATGGATGGATGAGGGAACAAGGAAAAATGACCGATCTCACTCTGGTTaGGTGTTCTTTCTCGAAGCC +
Preference number: 4 (lower is better)
Translates to: WMDGWMDGWMDEGTRKNDRSHSG*VFFLEA
Trigger: GGCTTCGAGAAAGAACACTCAACCAGAGTGAGATCG...GTCATTTTTCCTTGTTCCCTCATCCATCCATCCATCCATCCATCCATCCATCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS-3UTR TCA 90 bp AAGAAGGAGTTGGTGGAGTCACAAAGAGGCTCTAGCTTTCGTTTCCTCCTTCCTGCATGTAAATGGCCCTaGAGAGTCTCTCGAAAGTGT +
Preference number: 4 (lower is better)
Translates to: KKELVESQRGSSFRFLLPACKWP*RVSRKC
Trigger: ACACTTTCGAGAGACTCTTCAGGGCCATTTACATGC...AGGAAGGAGGAAACGAAAGCTAGAGCCTCTTTGTGACTCCACCAACTCCTTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS-3UTR CCA 90 bp AGTATGTGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCAGGAGCCAGGGACTCCTaGAATCCTATTGAGTGTCAC +
Preference number: 4 (lower is better)
Translates to: SMCADSSIKGDKKELVESGARDS*NPIECH
Trigger: GTGACACTCAATAGGATTCCAGGAGTCCCTGGCTCC...TGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACACATACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067778.8
CDS-3UTR CCA 90 bp AACAATCAGCCCCCTATGTTTTTCTCTGAGCACAGGAGCACAAGAACCTCTTTTGGAGCCAGGGACTCCTaGAATCCTATTGAGTGTCAC +
Preference number: 4 (lower is better)
Translates to: NNQPPMFFSEHRSTRTSFGARDS*NPIECH
Trigger: GTGACACTCAATAGGATTCCAGGAGTCCCTGGCTCC...AAAAGAGGTTCTTGTGCTCCTGTGCTCAGAGAAAAACATAGGGGGCTGATTGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000225759.2
CDS-3UTR TCA 90 bp AGTATGTGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCACGATCTCACTCTGGTTaGGTGTTCTTTCTCGAAGCC +
Preference number: 4 (lower is better)
Translates to: SMCADSSIKGDKKELVESRSHSG*VFFLEA
Trigger: GGCTTCGAGAAAGAACACTCAACCAGAGTGAGATCG...TGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACACATACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS-3UTR CCA 90 bp TGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCACAAAGACAAATCAACCGCCCGTaGGTCACGGAGAACAAAGTT +
Preference number: 4 (lower is better)
Translates to: CADSSIKGDKKELVESQRQINRP*VTENKV
Trigger: AACTTTGTTCTCCGTGACCCACGGGCGGTTGATTTG...TCTTTGTGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069958.15
CDS-3UTR TCA 90 bp GACACTACACACGGCTATACTTCATCTTCTCTCCACATCCCTAAAGAAATGAGACAGCATCACCGAGTCTaGGATGTTCAGCTTCTGGTA +
Preference number: 4 (lower is better)
Translates to: DTTHGYTSSSLHIPKEMRQHHRV*DVQLLV
Trigger: TACCAGAAGCTGAACATCTCAGACTCGGTGATGCTG...TCTCATTTCTTTAGGGATGTGGAGAGAAGATGAAGTATAGCCGTGTGTAGTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069958.15
CDS-3UTR TCA 90 bp AGTATGTGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCAGTTCCACGGCACCTTTaGATTCAGCTGTTGCCTTTT +
Preference number: 4 (lower is better)
Translates to: SMCADSSIKGDKKELVESVPRHL*IQLLPF
Trigger: AAAAGGCAACAGCTGAATTCAAAGGTGCCGTGGAAC...TGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACACATACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069958.15
CDS-3UTR GCA 90 bp AACAATCAGCCCCCTATGTTTTTCTCTGAGCACAGGAGCACAAGAACCTCTTTTCCACCAGATCTTTCATaGAGTTCAGATCAGCCTGGA +
Preference number: 4 (lower is better)
Translates to: NNQPPMFFSEHRSTRTSFPPDLS*SSDQPG
Trigger: TCCAGGCTGATCTGAACTGCATGAAAGATCTGGTGG...AAAAGAGGTTCTTGTGCTCCTGTGCTCAGAGAAAAACATAGGGGGCTGATTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000225759.2
CDS-3UTR GCA 90 bp ATTTACAGTAAAGAGGTGACCAACAATGGGCATGTAAACTTCTCCAGAAAAAGATCTTCCAACTGCATGTaGAGGAGGCAGCACCCCTGG +
Preference number: 4 (lower is better)
Translates to: IYSKEVTNNGHVNFSRKRSSNCM*RRQHPW
Trigger: CCAGGGGTGCTGCCTCCTGCACATGCAGTTGGAAGA...TCTTTTTCTGGAGAAGTTTACATGCCCATTGTTGGTCACCTCTTTACTGTAAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS-3UTR CCA 90 bp AACAATCAGCCCCCTATGTTTTTCTCTGAGCACAGGAGCACAAGAACCTCTTTTAGGCCAGGAAGGCATTaGGGAAACAGCTTAGTAACT +
Preference number: 4 (lower is better)
Translates to: NNQPPMFFSEHRSTRTSFRPGRH*GNSLVT
Trigger: AGTTACTAAGCTGTTTCCCCAATGCCTTCCTGGCCT...AAAAGAGGTTCTTGTGCTCCTGTGCTCAGAGAAAAACATAGGGGGCTGATTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000225759.2
CDS-3UTR CCA 90 bp GATTTCCTCAGACAGTATTATCCACCATTCTCCTTTGAACAGGGTATACTAATAAGGAGGCAGCACCCCTaGGGTGAGGTTCTTCCCAAT +
Preference number: 4 (lower is better)
Translates to: DFLRQYYPPFSFEQGILIRRQHP*GEVLPN
Trigger: ATTGGGAAGAACCTCACCCCAGGGGTGCTGCCTCCT...TATTAGTATACCCTGTTCAAAGGAGAATGGTGGATAATACTGTCTGAGGAAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
3UTR CAA 72 bp TTACAGTGCTCAGTGGATATTGCAAGCAGAGCCATGTaGCCAGATCCTCACGGTTCCCTGAAAACCATTTTT +
Preference number: 4 (lower is better)
Translates to: LQCSVDIASRAM*PDPHGSLKTIF
Trigger: AAAAATGGTTTTCAGGGAACCGTGAGGATCTGGCAACATGGCTCTGCTTGCAATATCCACTGAGCACTGTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR CAA 72 bp TGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTaGGTGGAGTCACAAAGAGGCTCTAGCTTTCGTTTC +
Preference number: 4 (lower is better)
Translates to: CADSSIKGDKKE*VESQRGSSFRF
Trigger: GAAACGAAAGCTAGAGCCTCTTTGTGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS-3UTR TCA 90 bp AAGAAGGAGTTGGTGGAGTCACAAAGAGGCTCTAGCTTTCGTTTCCTCCTTCCTCAAGAAGGCTTCTCGTaGATCATTAGTTTGTTTCTC +
Preference number: 4 (lower is better)
Translates to: KKELVESQRGSSFRFLLPQEGFS*IISLFL
Trigger: GAGAAACAAACTAATGATTCACGAGAAGCCTTCTTG...AGGAAGGAGGAAACGAAAGCTAGAGCCTCTTTGTGACTCCACCAACTCCTTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069958.15
CDS-3UTR TCA 90 bp TGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCACAAAGAAAATCGACCTCTTCCTaGGATAAAGGGGCAGTGATA +
Preference number: 4 (lower is better)
Translates to: CADSSIKGDKKELVESQRKSTSS*DKGAVI
Trigger: TATCACTGCCCCTTTATCTCAGGAAGAGGTCGATTT...TCTTTGTGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000069958.15
CDS-3UTR TCA 90 bp CAAGACCAGAGTCTCTTGGAAAAGAAAGCTCTTCTTTACGTCTTCAATTTCCATAGCCAAAATAAATGGTaGGGTTGTGGGGAGGTGGGG +
Preference number: 4 (lower is better)
Translates to: QDQSLLEKKALLYVFNFHSQNKW*GCGEVG
Trigger: CCCCACCTCCCCACAACCTCACCATTTATTTTGGCT...ATGGAAATTGAAGACGTAAAGAAGAGCTTTCTTTTCCAAGAGACTCTGGTCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000069958.15
CDS-3UTR TCA 90 bp TGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCACAAAGAGCATGTAAATGGCCCTaGAGAGCCTTTCAAAGGTAT +
Preference number: 4 (lower is better)
Translates to: CADSSIKGDKKELVESQRACKWP*RAFQRY
Trigger: ATACCTTTGAAAGGCTCTTCAGGGCCATTTACATGC...TCTTTGTGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067778.8
CDS-3UTR TCA 90 bp AACAATCAGCCCCCTATGTTTTTCTCTGAGCACAGGAGCACAAGAACCTCTTTTGCATGTAAATGGCCCTaGAGAGCCTTTCAAAGGTAT +
Preference number: 4 (lower is better)
Translates to: NNQPPMFFSEHRSTRTSFACKWP*RAFQRY
Trigger: ATACCTTTGAAAGGCTCTTCAGGGCCATTTACATGC...AAAAGAGGTTCTTGTGCTCCTGTGCTCAGAGAAAAACATAGGGGGCTGATTGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000225759.2
CDS-3UTR GCA 90 bp ACCCTTTATTACCCGACACAACCCATTTTACTTTTCAGCAGAAGAGACAAGAGATCCCCACTGAACATCTaGAAGCAGACTTCCGCTAAG +
Preference number: 4 (lower is better)
Translates to: TLYYPTQPILLFSRRDKRSPLNI*KQTSAK
Trigger: CTTAGCGGAAGTCTGCTTGCAGATGTTCAGTGGGGA...TCTCTTGTCTCTTCTGCTGAAAAGTAAAATGGGTTGTGTCGGGTAATAAAGGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS-3UTR GCA 90 bp CAAGACCAGAGTCTCTTGGAAAAGAAAGCTCTTCTTTACGTCTTCAATTTCCATCTTGGTTCTTCCAACTaGATGTGCAGGAGGCAGCAC +
Preference number: 4 (lower is better)
Translates to: QDQSLLEKKALLYVFNFHLGSSN*MCRRQH
Trigger: GTGCTGCCTCCTGCACATGCAGTTGGAAGAACCAAG...ATGGAAATTGAAGACGTAAAGAAGAGCTTTCTTTTCCAAGAGACTCTGGTCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS-3UTR CCA 90 bp GACACTACACACGGCTATACTTCATCTTCTCTCCACATCCCTAAAGAAATGAGATCTAACAGCTCCTGGTaGACGTACTTGGTTCTTCCA +
Preference number: 4 (lower is better)
Translates to: DTTHGYTSSSLHIPKEMRSNSSW*TYLVLP
Trigger: TGGAAGAACCAAGTACGTCCACCAGGAGCTGTTAGA...TCTCATTTCTTTAGGGATGTGGAGAGAAGATGAAGTATAGCCGTGTGTAGTGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS-3UTR TCA 90 bp GACACTACACACGGCTATACTTCATCTTCTCTCCACATCCCTAAAGAAATGAGAAGCCCTTTCAGGTACTaGACTATCTCCTTGTTGGTT +
Preference number: 4 (lower is better)
Translates to: DTTHGYTSSSLHIPKEMRSPFRY*TISLLV
Trigger: AACCAACAAGGAGATAGTTCAGTACCTGAAAGGGCT...TCTCATTTCTTTAGGGATGTGGAGAGAAGATGAAGTATAGCCGTGTGTAGTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069958.15
CDS-3UTR TCA 90 bp GACACTACACACGGCTATACTTCATCTTCTCTCCACATCCCTAAAGAAATGAGAAAAAACTCTCCCCACTaGACATCTGCAAGCAGACTT +
Preference number: 4 (lower is better)
Translates to: DTTHGYTSSSLHIPKEMRKNSPH*TSASRL
Trigger: AAGTCTGCTTGCAGATGTTCAGTGGGGAGAGTTTTT...TCTCATTTCTTTAGGGATGTGGAGAGAAGATGAAGTATAGCCGTGTGTAGTGTC
43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS-3UTR GCA 90 bp TGGATGGATGGATGGATGGATGGATGGATGGATGAGGGAACAAGGAAAAATGACTTCCATAGATACAAATaGCATGGACGTAGTGACCAT +
Preference number: 4 (lower is better)
Translates to: WMDGWMDGWMDEGTRKNDFHRYK*HGRSDH
Trigger: ATGGTCACTACGTCCATGGCATTTGTATCTATGGAA...GTCATTTTTCCTTGTTCCCTCATCCATCCATCCATCCATCCATCCATCCATCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS-3UTR GCA 90 bp AACAATCAGCCCCCTATGTTTTTCTCTGAGCACAGGAGCACAAGAACCTCTTTTATCCGTCTTTGCCTTTaGGTTCCTGGTGTACATATT +
Preference number: 4 (lower is better)
Translates to: NNQPPMFFSEHRSTRTSFIRLCL*VPGVHI
Trigger: AATATGTACACCAGGAACGCAAAGGCAAAGACGGAT...AAAAGAGGTTCTTGTGCTCCTGTGCTCAGAGAAAAACATAGGGGGCTGATTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000225759.2
CDS-3UTR GCA 90 bp GACACTACACACGGCTATACTTCATCTTCTCTCCACATCCCTAAAGAAATGAGACCACCAGATCTTTCATaGAGTTCAGATCAGCTTGGA +
Preference number: 4 (lower is better)
Translates to: DTTHGYTSSSLHIPKEMRPPDLS*SSDQLG
Trigger: TCCAAGCTGATCTGAACTGCATGAAAGATCTGGTGG...TCTCATTTCTTTAGGGATGTGGAGAGAAGATGAAGTATAGCCGTGTGTAGTGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS-3UTR GCA 90 bp AGTATGTGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCATTCCATAGATACAAATaGCATGGACGTAGTGACCAT +
Preference number: 4 (lower is better)
Translates to: SMCADSSIKGDKKELVESFHRYK*HGRSDH
Trigger: ATGGTCACTACGTCCATGGCATTTGTATCTATGGAA...TGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACACATACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS-3UTR GCA 90 bp CAGTCCAATGACAGCACAAGAATGAAGTTGTGGAAAGTGACATCATTTAAAGCACCACCAGATCTTTCATaGAGTTCAGATCAGCCTGGA +
Preference number: 4 (lower is better)
Translates to: QSNDSTRMKLWKVTSFKAPPDLS*SSDQPG
Trigger: TCCAGGCTGATCTGAACTGCATGAAAGATCTGGTGG...TGCTTTAAATGATGTCACTTTCCACAACTTCATTCTTGTGCTGTCATTGGACTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067778.8
CDS-3UTR CCA 90 bp CAAGACCAGAGTCTCTTGGAAAAGAAAGCTCTTCTTTACGTCTTCAATTTCCATAGGCCAGGAAGGCATTaGGGAAACAGCTTAGTAACT +
Preference number: 4 (lower is better)
Translates to: QDQSLLEKKALLYVFNFHRPGRH*GNSLVT
Trigger: AGTTACTAAGCTGTTTCCCCAATGCCTTCCTGGCCT...ATGGAAATTGAAGACGTAAAGAAGAGCTTTCTTTTCCAAGAGACTCTGGTCTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067778.8
ENSMUST00000110191.10
CDS-3UTR CCA 90 bp TGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCACAAAGACAGTTGGTGTGGAGGTaGAGTCTTCAAAATATTTGT +
Preference number: 4 (lower is better)
Translates to: CADSSIKGDKKELVESQRQLVWR*SLQNIC
Trigger: ACAAATATTTTGAAGACTCCACCTCCACACCAACTG...TCTTTGTGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000067778.8
CDS-3UTR CCA 90 bp AACAATCAGCCCCCTATGTTTTTCTCTGAGCACAGGAGCACAAGAACCTCTTTTCAGTTGGTGTGGAGGTaGAGTCTTCAAAATATTTGT +
Preference number: 4 (lower is better)
Translates to: NNQPPMFFSEHRSTRTSFQLVWR*SLQNIC
Trigger: ACAAATATTTTGAAGACTCCACCTCCACACCAACTG...AAAAGAGGTTCTTGTGCTCCTGTGCTCAGAGAAAAACATAGGGGGCTGATTGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000225759.2
CDS-3UTR CCA 90 bp ATTTACAGTAAAGAGGTGACCAACAATGGGCATGTAAACTTCTCCAGAAAAAGAATTTCCAGGGGATCTTaGAGGCCACCAGATCTTTCA +
Preference number: 4 (lower is better)
Translates to: IYSKEVTNNGHVNFSRKRISRGS*RPPDLS
Trigger: TGAAAGATCTGGTGGCCTCCAAGATCCCCTGGAAAT...TCTTTTTCTGGAGAAGTTTACATGCCCATTGTTGGTCACCTCTTTACTGTAAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS-3UTR CCA 90 bp GACACTACACACGGCTATACTTCATCTTCTCTCCACATCCCTAAAGAAATGAGAAAGTCTACTGAACGCTaGTCTTTGAGGACAAAGTTA +
Preference number: 4 (lower is better)
Translates to: DTTHGYTSSSLHIPKEMRKSTER*SLRTKL
Trigger: TAACTTTGTCCTCAAAGACCAGCGTTCAGTAGACTT...TCTCATTTCTTTAGGGATGTGGAGAGAAGATGAAGTATAGCCGTGTGTAGTGTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS-3UTR GCA 90 bp CAGTCCAATGACAGCACAAGAATGAAGTTGTGGAAAGTGACATCATTTAAAGCAATCCGTCTTTGCCTTTaGGTTCCTGGTGTACATATT +
Preference number: 4 (lower is better)
Translates to: QSNDSTRMKLWKVTSFKAIRLCL*VPGVHI
Trigger: AATATGTACACCAGGAACGCAAAGGCAAAGACGGAT...TGCTTTAAATGATGTCACTTTCCACAACTTCATTCTTGTGCTGTCATTGGACTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000067778.8
CDS-3UTR GCA 90 bp GATTTCCTCAGACAGTATTATCCACCATTCTCCTTTGAACAGGGTATACTAATATTAGCAAACAGGCTTTaGGAATTAATCAGCCACTGC +
Preference number: 4 (lower is better)
Translates to: DFLRQYYPPFSFEQGILILANRL*ELISHC
Trigger: GCAGTGGCTGATTAATTCGCAAAGCCTGTTTGCTAA...TATTAGTATACCCTGTTCAAAGGAGAATGGTGGATAATACTGTCTGAGGAAATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
3UTR CAA 72 bp CATAACATTCAGTCCAATGACAGCACAAGAATGAAGTaGTGGAAAGTGACATCATTTAAAGCATGTGGGGTT +
Preference number: 4 (lower is better)
Translates to: HNIQSNDSTRMK*WKVTSFKACGV
Trigger: AACCCCACATGCTTTAAATGATGTCACTTTCCACAACTTCATTCTTGTGCTGTCATTGGACTGAATGTTATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS-3UTR GCA 90 bp GATTTCCTCAGACAGTATTATCCACCATTCTCCTTTGAACAGGGTATACTAATATTCCATAGATACAAATaGCATGGACGTAGTGACCAT +
Preference number: 4 (lower is better)
Translates to: DFLRQYYPPFSFEQGILIFHRYK*HGRSDH
Trigger: ATGGTCACTACGTCCATGGCATTTGTATCTATGGAA...TATTAGTATACCCTGTTCAAAGGAGAATGGTGGATAATACTGTCTGAGGAAATC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS-3UTR CCA 90 bp GATTTCCTCAGACAGTATTATCCACCATTCTCCTTTGAACAGGGTATACTAATAGAACTATTTCTTTGTTaGTTTTCAGAGGAAAGTCCT +
Preference number: 4 (lower is better)
Translates to: DFLRQYYPPFSFEQGILIELFLC*FSEESP
Trigger: AGGACTTTCCTCTGAAAACCAACAAAGAAATAGTTC...TATTAGTATACCCTGTTCAAAGGAGAATGGTGGATAATACTGTCTGAGGAAATC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS GCA 90 bp GGCAGGGTGGCCCCAGAGCGGGAGACCTTACCATGGCAGCCTCCATaGTTCGCTTCCATGTCCATCCACTTCACAGCTCTGAGGTTACCC +
Preference number: 5 (lower is better)
Translates to: GRVAPERETLPWQPP*FASMSIHFTALRLP
Trigger: GGGTAACCTCAGAGCTGTGAAGTGGATGGACATGGAAGCGAAGCATGGAGGCTGCCATGGTAAGGTCTCCCGCTCTGGGGCCACCCTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000223570.2
ENSMUST00000225759.2
CDS TCA 90 bp GGCAGCCTCCATGCTTCGCTTCCATGTCCATCCACTTCACAGCTCTaGGGTTACCCGTCCAGGATGCGTTTGGTGGCATGGAGCCAGGGA +
Preference number: 5 (lower is better)
Translates to: GSLHASLPCPSTSQL*GYPSRMRLVAWSQG
Trigger: TCCCTGGCTCCATGCCACCAAACGCATCCTGGACGGGTAACCTCAGAGCTGTGAAGTGGATGGACATGGAAGCGAAGCATGGAGGCTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
ENSMUST00000225759.2
CDS CCA 90 bp GTCCATCCACTTCACAGCTCTGAGGTTACCCGTCCAGGATGCGTTTaGTGGCATGGAGCCAGGGACTCCTGGAATCCTATTGAGCGTCAC +
Preference number: 5 (lower is better)
Translates to: VHPLHSSEVTRPGCV*WHGARDSWNPIERH
Trigger: GTGACGCTCAATAGGATTCCAGGAGTCCCTGGCTCCATGCCACCAAACGCATCCTGGACGGGTAACCTCAGAGCTGTGAAGTGGATGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069958.15
CDS CCA 90 bp CATCCACTTCACAGCTCTGAGGTTACCCGTCCAGGATGCGTTTGGTaGCATGGAGCCAGGGACTCCAGGGATCCTATTGAGTGTCACCCA +
Preference number: 5 (lower is better)
Translates to: HPLHSSEVTRPGCVW*HGARDSRDPIECHP
Trigger: TGGGTGACACTCAATAGGATCCCTGGAGTCCCTGGCTCCATGCCACCAAACGCATCCTGGACGGGTAACCTCAGAGCTGTGAAGTGGATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS CCA 90 bp GTCCATCCACTTCACAGCTCTGAGGTTACCCGTCCAGGATGCGTTTaGTGGCATGGAGCCAGGGACTCCTGGAATCCTATTGAGTGTCAC +
Preference number: 5 (lower is better)
Translates to: VHPLHSSEVTRPGCV*WHGARDSWNPIECH
Trigger: GTGACACTCAATAGGATTCCAGGAGTCCCTGGCTCCATGCCACCAAACGCATCCTGGACGGGTAACCTCAGAGCTGTGAAGTGGATGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067778.8
ENSMUST00000225759.2
CDS GCA 90 bp TTCCATGTCCATCCACTTCACAGCTCTGAGGTTACCCGTCCAGGATaGGTTTGGTGGCATGGAGCCAGGGACTCCTGGAATCCTATTGAG +
Preference number: 5 (lower is better)
Translates to: FHVHPLHSSEVTRPG*VWWHGARDSWNPIE
Trigger: CTCAATAGGATTCCAGGAGTCCCTGGCTCCATGCCACCAAACGCATCCTGGACGGGTAACCTCAGAGCTGTGAAGTGGATGGACATGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000225759.2
CDS-3UTR CAA 90 bp ATGTGTGTATGCATATGGGGCGGGGGAGTGCCCAGGCACAAGGACCTGTGTGAGGTTAGCAAACAGGCTTaGCGAATTAATCAGCCACTG +
Preference number: 5 (lower is better)
Translates to: MCVCIWGGGVPRHKDLCEVSKQA*RINQPL
Trigger: CAGTGGCTGATTAATTCGCAAAGCCTGTTTGCTAAC...CTCACACAGGTCCTTGTGCCTGGGCACTCCCCCGCCCCATATGCATACACACAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS-3UTR CAA 90 bp TCTGTCCCGTGGGACCCAGGAATTGAATGCAGGTCATCAGGTTTGGCTGCAAGCGGGGAGCTTTTAATCTaGCTGTATTGTGCACGTAGG +
Preference number: 5 (lower is better)
Translates to: SVPWDPGIECRSSGLAASGELLI*LYCARR
Trigger: CCTACGTGCACAATACAGCAAGATTAAAAGCTCCCC...GCTTGCAGCCAAACCTGATGACCTGCATTCAATTCCTGGGTCCCACGGGACAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS-3UTR CAA 90 bp GAGACAAGAAGGAGTTGGTGGAGTCACAAAGAGGCTCTAGCTTTCGTTTCCTCCGCGATCTCACTCTGGTaGAGTGTTCTTTCTCGAAGC +
Preference number: 5 (lower is better)
Translates to: ETRRSWWSHKEALAFVSSAISLW*SVLSRS
Trigger: GCTTCGAGAAAGAACACTCAACCAGAGTGAGATCGC...GGAGGAAACGAAAGCTAGAGCCTCTTTGTGACTCCACCAACTCCTTCTTGTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS-3UTR CAA 90 bp AAGAAGGAGTTGGTGGAGTCACAAAGAGGCTCTAGCTTTCGTTTCCTCCTTCCTGAGGCCAGGAAGGCATaGGGGAAACAGCTTAGTAAC +
Preference number: 5 (lower is better)
Translates to: KKELVESQRGSSFRFLLPEARKA*GKQLSN
Trigger: GTTACTAAGCTGTTTCCCCAATGCCTTCCTGGCCTC...AGGAAGGAGGAAACGAAAGCTAGAGCCTCTTTGTGACTCCACCAACTCCTTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067778.8
ENSMUST00000110191.10
CDS-3UTR CAA 90 bp TGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCACAAAGATCCTGCCCGCAGGTGTaGAGGACATATTTCCAGGGG +
Preference number: 5 (lower is better)
Translates to: CADSSIKGDKKELVESQRSCPQV*RTYFQG
Trigger: CCCCTGGAAATATGTCCTCAACACCTGCGGGCAGGA...TCTTTGTGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067778.8
ENSMUST00000110191.10
CDS-3UTR CAA 90 bp AACAATCAGCCCCCTATGTTTTTCTCTGAGCACAGGAGCACAAGAACCTCTTTTTCCTGCCCGCAGGTGTaGAGGACATATTTCCAGGGG +
Preference number: 5 (lower is better)
Translates to: NNQPPMFFSEHRSTRTSFSCPQV*RTYFQG
Trigger: CCCCTGGAAATATGTCCTCAACACCTGCGGGCAGGA...AAAAGAGGTTCTTGTGCTCCTGTGCTCAGAGAAAAACATAGGGGGCTGATTGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000225759.2
CDS-3UTR CAA 90 bp TGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCACAAAGAGAGGTGGACAGGTCTTaGATGCAGTTCAGGTCAGCC +
Preference number: 5 (lower is better)
Translates to: CADSSIKGDKKELVESQREVDRS*MQFRSA
Trigger: GGCTGACCTGAACTGCATCAAAGACCTGTCCACCTC...TCTTTGTGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069958.15
CDS-3UTR CAA 90 bp TCTGTCCCGTGGGACCCAGGAATTGAATGCAGGTCATCAGGTTTGGCTGCAAGCGTGTTGAGTTCAAATTaGTTAGCAAACAGGCTTTGC +
Preference number: 5 (lower is better)
Translates to: SVPWDPGIECRSSGLAASVLSSN*LANRLC
Trigger: GCAAAGCCTGTTTGCTAACAAATTTGAACTCAACAC...GCTTGCAGCCAAACCTGATGACCTGCATTCAATTCCTGGGTCCCACGGGACAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS TCA 90 bp GAATCATTAGTTTGTTTCTCCACAGGAACCGGCTTTTCCCGTCGATaGAAGATGAGCACACTTGAGCCAGCATCACCGAGTCTGAGATGT +
Preference number: 5 (lower is better)
Translates to: ESLVCFSTGTGFSRR*KMSTLEPASPSLRC
Trigger: ACATCTCAGACTCGGTGATGCTGGCTCAAGTGTGCTCATCTTTCATCGACGGGAAAAGCCGGTTCCTGTGGAGAAACAAACTAATGATTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069958.15
CDS-3UTR CAA 90 bp AACAATCAGCCCCCTATGTTTTTCTCTGAGCACAGGAGCACAAGAACCTCTTTTGAGGCCAGGAAGGCATaGGGGAAACAGCTTAGTAAC +
Preference number: 5 (lower is better)
Translates to: NNQPPMFFSEHRSTRTSFEARKA*GKQLSN
Trigger: GTTACTAAGCTGTTTCCCCAATGCCTTCCTGGCCTC...AAAAGAGGTTCTTGTGCTCCTGTGCTCAGAGAAAAACATAGGGGGCTGATTGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000225759.2
CDS-3UTR CAA 90 bp AACAATCAGCCCCCTATGTTTTTCTCTGAGCACAGGAGCACAAGAACCTCTTTTTATTTCCAGGGGACCTaGGAGGCCACCAGATCTTTC +
Preference number: 5 (lower is better)
Translates to: NNQPPMFFSEHRSTRTSFYFQGT*EATRSF
Trigger: GAAAGATCTGGTGGCCTCCAAGGTCCCCTGGAAATA...AAAAGAGGTTCTTGTGCTCCTGTGCTCAGAGAAAAACATAGGGGGCTGATTGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000225759.2
CDS-3UTR CAA 90 bp GACACTACACACGGCTATACTTCATCTTCTCTCCACATCCCTAAAGAAATGAGATATTTCCAGGGGACCTaGGAGGCCACCAGATCTTTC +
Preference number: 5 (lower is better)
Translates to: DTTHGYTSSSLHIPKEMRYFQGT*EATRSF
Trigger: GAAAGATCTGGTGGCCTCCAAGGTCCCCTGGAAATA...TCTCATTTCTTTAGGGATGTGGAGAGAAGATGAAGTATAGCCGTGTGTAGTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067778.8
CDS-3UTR CAA 90 bp CAGTCCAATGACAGCACAAGAATGAAGTTGTGGAAAGTGACATCATTTAAAGCATCCTGCCCGCAGGTGTaGAGGACATATTTCCAGGGG +
Preference number: 5 (lower is better)
Translates to: QSNDSTRMKLWKVTSFKASCPQV*RTYFQG
Trigger: CCCCTGGAAATATGTCCTCAACACCTGCGGGCAGGA...TGCTTTAAATGATGTCACTTTCCACAACTTCATTCTTGTGCTGTCATTGGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067778.8
ENSMUST00000110191.10
CDS TCA 90 bp CATACGCCAAAGGAAAATCGACCTCTTCCTGAGATAAAGGGGCAGTaGTATAGTGGCTTTGGGTCACATATTCTGTGCAAGAAGGCTTCT +
Preference number: 5 (lower is better)
Translates to: HTPKENRPLPEIKGQ*YSGFGSHILCKKAS
Trigger: AGAAGCCTTCTTGCACAGAATATGTGACCCAAAGCCACTATATCACTGCCCCTTTATCTCAGGAAGAGGTCGATTTTCCTTTGGCGTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069958.15
CDS-3UTR CAA 90 bp TGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCACAAAGATCATTCAGGATAAAGTaGACAAAGTCCCGGGTGAGG +
Preference number: 5 (lower is better)
Translates to: CADSSIKGDKKELVESQRSFRIK*TKSRVR
Trigger: CCTCACCCGGGACTTTGTCAACTTTATCCTGAATGA...TCTTTGTGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000067778.8
CDS-3UTR CAA 90 bp AACAATCAGCCCCCTATGTTTTTCTCTGAGCACAGGAGCACAAGAACCTCTTTTTCATTCAGGATAAAGTaGACAAAGTCCCGGGTGAGG +
Preference number: 5 (lower is better)
Translates to: NNQPPMFFSEHRSTRTSFSFRIK*TKSRVR
Trigger: CCTCACCCGGGACTTTGTCAACTTTATCCTGAATGA...AAAAGAGGTTCTTGTGCTCCTGTGCTCAGAGAAAAACATAGGGGGCTGATTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000225759.2
CDS-3UTR CAA 90 bp GACACTACACACGGCTATACTTCATCTTCTCTCCACATCCCTAAAGAAATGAGATCCTGGTGGACGTACTaGGTTCTTCCAACTGCATGT +
Preference number: 5 (lower is better)
Translates to: DTTHGYTSSSLHIPKEMRSWWTY*VLPTAC
Trigger: ACATGCAGTTGGAAGAACCAAGTACGTCCACCAGGA...TCTCATTTCTTTAGGGATGTGGAGAGAAGATGAAGTATAGCCGTGTGTAGTGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS-3UTR CAA 90 bp TGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCACAAAGAGGACTATACGTGTCCTaGGACCAGGAGATTAAGTCT +
Preference number: 5 (lower is better)
Translates to: CADSSIKGDKKELVESQRGLYVS*DQEIKS
Trigger: AGACTTAATCTCCTGGTCCAAGGACACGTATAGTCC...TCTTTGTGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS-3UTR CAA 90 bp AGTATGTGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCAGTTAGCAAACAGGCTTaGCGAATTAATCAGCCACTG +
Preference number: 5 (lower is better)
Translates to: SMCADSSIKGDKKELVESVSKQA*RINQPL
Trigger: CAGTGGCTGATTAATTCGCAAAGCCTGTTTGCTAAC...TGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACACATACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS-3UTR CAA 90 bp TGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCACAAAGAGGACTGAAAGTATCTTaGGACCAATGGAGCAAATCA +
Preference number: 5 (lower is better)
Translates to: CADSSIKGDKKELVESQRGLKVS*DQWSKS
Trigger: TGATTTGCTCCATTGGTCCAAAGATACTTTCAGTCC...TCTTTGTGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000069958.15
CDS-3UTR CAA 90 bp TCTTGCTTCCCTCGTGTCTGTCAGCATGTGTCTGGGGGAATCATAGACATTCAAGTAAGAGGGTATGTGTaGAGTTCAAATTTGTTAGCA +
Preference number: 5 (lower is better)
Translates to: SCFPRVCQHVSGGIIDIQVRGYV*SSNLLA
Trigger: TGCTAACAAATTTGAACTCAACACATACCCTCTTAC...TTGAATGTCTATGATTCCCCCAGACACATGCTGACAGACACGAGGGAAGCAAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS-3UTR CAA 90 bp AAGAAGGAGTTGGTGGAGTCACAAAGAGGCTCTAGCTTTCGTTTCCTCCTTCCTGTAAGAGGGTATGTGTaGAGTTCAAATTTGTTAGCA +
Preference number: 5 (lower is better)
Translates to: KKELVESQRGSSFRFLLPVRGYV*SSNLLA
Trigger: TGCTAACAAATTTGAACTCAACACATACCCTCTTAC...AGGAAGGAGGAAACGAAAGCTAGAGCCTCTTTGTGACTCCACCAACTCCTTCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS-3UTR CAA 90 bp GATTTCCTCAGACAGTATTATCCACCATTCTCCTTTGAACAGGGTATACTAATAGAGGCCAGGAAGGCATaGGGGAAACAGCTTAGTAAC +
Preference number: 5 (lower is better)
Translates to: DFLRQYYPPFSFEQGILIEARKA*GKQLSN
Trigger: GTTACTAAGCTGTTTCCCCAATGCCTTCCTGGCCTC...TATTAGTATACCCTGTTCAAAGGAGAATGGTGGATAATACTGTCTGAGGAAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067778.8
ENSMUST00000110191.10
CDS-3UTR CAA 90 bp GACACTACACACGGCTATACTTCATCTTCTCTCCACATCCCTAAAGAAATGAGAAGTGATATAGTGGCTTaGGGTCACATATTCTGTGCA +
Preference number: 5 (lower is better)
Translates to: DTTHGYTSSSLHIPKEMRSDIVA*GHIFCA
Trigger: TGCACAGAATATGTGACCCAAAGCCACTATATCACT...TCTCATTTCTTTAGGGATGTGGAGAGAAGATGAAGTATAGCCGTGTGTAGTGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069958.15
CDS-3UTR CAA 90 bp TGTGCGGACTCTTCAATAAAAGGAGACAAGAAGGAGTTGGTGGAGTCACAAAGAGTGTTGAGTTCAAATTaGTTAGCAAACAGGCTTTGC +
Preference number: 5 (lower is better)
Translates to: CADSSIKGDKKELVESQRVLSSN*LANRLC
Trigger: GCAAAGCCTGTTTGCTAACAAATTTGAACTCAACAC...TCTTTGTGACTCCACCAACTCCTTCTTGTCTCCTTTTATTGAAGAGTCCGCACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS-3UTR CAA 90 bp ATTTACAGTAAAGAGGTGACCAACAATGGGCATGTAAACTTCTCCAGAAAAAGAGCGATCTCACTCTGGTaGAGTGTTCTTTCTCGAAGC +
Preference number: 5 (lower is better)
Translates to: IYSKEVTNNGHVNFSRKRAISLW*SVLSRS
Trigger: GCTTCGAGAAAGAACACTCAACCAGAGTGAGATCGC...TCTTTTTCTGGAGAAGTTTACATGCCCATTGTTGGTCACCTCTTTACTGTAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS-3UTR CAA 90 bp GATTTCCTCAGACAGTATTATCCACCATTCTCCTTTGAACAGGGTATACTAATAGCGATCTCACTCTGGTaGAGTGTTCTTTCTCGAAGC +
Preference number: 5 (lower is better)
Translates to: DFLRQYYPPFSFEQGILIAISLW*SVLSRS
Trigger: GCTTCGAGAAAGAACACTCAACCAGAGTGAGATCGC...TATTAGTATACCCTGTTCAAAGGAGAATGGTGGATAATACTGTCTGAGGAAATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS-3UTR CAA 90 bp ACCCTTTATTACCCGACACAACCCATTTTACTTTTCAGCAGAAGAGACAAGAGAACTGAACGCTGGTCTTaGAGGACAAAGTTAGCAAAT +
Preference number: 5 (lower is better)
Translates to: TLYYPTQPILLFSRRDKRTERWS*RTKLAN
Trigger: ATTTGCTAACTTTGTCCTCAAAGACCAGCGTTCAGT...TCTCTTGTCTCTTCTGCTGAAAAGTAAAATGGGTTGTGTCGGGTAATAAAGGGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS-3UTR CAA 90 bp CAAGACCAGAGTCTCTTGGAAAAGAAAGCTCTTCTTTACGTCTTCAATTTCCATGTGTTGAGTTCAAATTaGTTAGCAAACAGGCTTTGC +
Preference number: 5 (lower is better)
Translates to: QDQSLLEKKALLYVFNFHVLSSN*LANRLC
Trigger: GCAAAGCCTGTTTGCTAACAAATTTGAACTCAACAC...ATGGAAATTGAAGACGTAAAGAAGAGCTTTCTTTTCCAAGAGACTCTGGTCTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS-3UTR CAA 90 bp CAGTCCAATGACAGCACAAGAATGAAGTTGTGGAAAGTGACATCATTTAAAGCAGTAAGAGGGTATGTGTaGAGTTCAAATTTGTTAGCA +
Preference number: 5 (lower is better)
Translates to: QSNDSTRMKLWKVTSFKAVRGYV*SSNLLA
Trigger: TGCTAACAAATTTGAACTCAACACATACCCTCTTAC...TGCTTTAAATGATGTCACTTTCCACAACTTCATTCTTGTGCTGTCATTGGACTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS GCA 72 bp GCCCCAGAGCGGGAGACCTTACCATGGCAGCCTCCATaGTTCGCTTCCATGTCCATCCACTTCACAGCTCTG +
Preference number: 6 (lower is better)
Translates to: APERETLPWQPP*FASMSIHFTAL
Trigger: CAGAGCTGTGAAGTGGATGGACATGGAAGCGAAGCATGGAGGCTGCCATGGTAAGGTCTCCCGCTCTGGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000223570.2
ENSMUST00000225759.2
CDS CCA 72 bp CACAGCTCTGAGGTTACCCGTCCAGGATGCGTTTGGTaGCATGGAGCCAGGGACTCCAGGGATCCTATTGAG +
Preference number: 6 (lower is better)
Translates to: HSSEVTRPGCVW*HGARDSRDPIE
Trigger: CTCAATAGGATCCCTGGAGTCCCTGGCTCCATGCCACCAAACGCATCCTGGACGGGTAACCTCAGAGCTGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS CAA 72 bp GGAGGCCACCAGATCTTTCATGCAGTTCAGATCAGCTaGGAGCCGGGAGAAGCCACCATAGACCACCGGCTC +
Preference number: 6 (lower is better)
Translates to: GGHQIFHAVQIS*EPGEATIDHRL
Trigger: GAGCCGGTGGTCTATGGTGGCTTCTCCCGGCTCCAAGCTGATCTGAACTGCATGAAAGATCTGGTGGCCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS CAA 90 bp GGGGATCTTGGAGGCCACCAGATCTTTCATGCAGTTCAGATCAGCTaGGAGCCGGGAGAAGCCACCATAGACCACCGGCTCCATCCTAGA +
Preference number: 6 (lower is better)
Translates to: GDLGGHQIFHAVQIS*EPGEATIDHRLHPR
Trigger: TCTAGGATGGAGCCGGTGGTCTATGGTGGCTTCTCCCGGCTCCAAGCTGATCTGAACTGCATGAAAGATCTGGTGGCCTCCAAGATCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS CCA 72 bp CACAGCTCTGAGGTTACCCGTCCAGGATGCGTTTGGTaGCATGGAGCCAGGGACTCCTGGAATCCTATTGAG +
Preference number: 6 (lower is better)
Translates to: HSSEVTRPGCVW*HGARDSWNPIE
Trigger: CTCAATAGGATTCCAGGAGTCCCTGGCTCCATGCCACCAAACGCATCCTGGACGGGTAACCTCAGAGCTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000225759.2
CDS TCA 72 bp CATGCTTCGCTTCCATGTCCATCCACTTCACAGCTCTaGGGTTACCCGTCCAGGATGCGTTTGGTGGCATGG +
Preference number: 6 (lower is better)
Translates to: HASLPCPSTSQL*GYPSRMRLVAW
Trigger: CCATGCCACCAAACGCATCCTGGACGGGTAACCTCAGAGCTGTGAAGTGGATGGACATGGAAGCGAAGCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
ENSMUST00000225759.2
CDS CCA 72 bp CTTCACAGCTCTGAGGTTACCCGTCCAGGATGCGTTTaGTGGCATGGAGCCAGGGACTCCTGGAATCCTATT +
Preference number: 6 (lower is better)
Translates to: LHSSEVTRPGCV*WHGARDSWNPI
Trigger: AATAGGATTCCAGGAGTCCCTGGCTCCATGCCACCAAACGCATCCTGGACGGGTAACCTCAGAGCTGTGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000225759.2
CDS GCA 72 bp GAGGCCAGGAAGGCATTGGGGAAACAGCTTAGTAACTaGCGCACCGCTTCTTTGAAGGTGTCTGTCGCCTTA +
Preference number: 6 (lower is better)
Translates to: EARKALGKQLSN*RTASLKVSVAL
Trigger: TAAGGCGACAGACACCTTCAAAGAAGCGGTGCGGCAGTTACTAAGCTGTTTCCCCAATGCCTTCCTGGCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067778.8
ENSMUST00000225759.2
CDS GCA 72 bp ATTTCCAGGGGATCTTGGAGGCCACCAGATCTTTCATaGAGTTCAGATCAGCTTGGAGCCGGGAGAAGCCAC +
Preference number: 6 (lower is better)
Translates to: ISRGSWRPPDLS*SSDQLGAGRSH
Trigger: GTGGCTTCTCCCGGCTCCAAGCTGATCTGAACTGCATGAAAGATCTGGTGGCCTCCAAGATCCCCTGGAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS GCA 72 bp GAGGCCAGGAAGGCATTGGGGAAACAGCTTAGTAACTaGCGCACCTCTTCTTTGAAGGTGTCTGTCGCCTTA +
Preference number: 6 (lower is better)
Translates to: EARKALGKQLSN*RTSSLKVSVAL
Trigger: TAAGGCGACAGACACCTTCAAAGAAGAGGTGCGGCAGTTACTAAGCTGTTTCCCCAATGCCTTCCTGGCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS TCA 72 bp TGGGGAAACAGCTTAGTAACTGCCGCACCGCTTCTTTaGAGGTGTCTGTCGCCTTACTATCCACATGCACAC +
Preference number: 6 (lower is better)
Translates to: WGNSLVTAAPLL*RCLSPYYPHAH
Trigger: GTGTGCATGTGGATAGTAAGGCGACAGACACCTTCAAAGAAGCGGTGCGGCAGTTACTAAGCTGTTTCCCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067778.8
ENSMUST00000225759.2
CDS GCA 72 bp TCAGCCACTGCAAGTCTCCGTTTCCATAGATACAAATaGCATGGACGTAGTGACCATGGCAGCCTCCATGCT +
Preference number: 6 (lower is better)
Translates to: SATASLRFHRYK*HGRSDHGSLHA
Trigger: AGCATGGAGGCTGCCATGGTCACTACGTCCATGGCATTTGTATCTATGGAAACGGAGACTTGCAGTGGCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS CCA 72 bp CAGAAATACCAGCTCGGCTGTATGGCGATCTCACTCTaGTTGAGTGTTCTTTCTCGAAGCCTCAGTTCCAGG +
Preference number: 6 (lower is better)
Translates to: QKYQLGCMAISL*LSVLSRSLSSR
Trigger: CCTGGAACTGAGGCTTCGAGAAAGAACACTCAACCAGAGTGAGATCGCCATACAGCCGAGCTGGTATTTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS TCA 72 bp TCCGTGCGCTGTCCGCTGTATAAAAACTCTCCCCACTaGACATCTGCAAGCAGACTTCCGCTAAGACTGAAA +
Preference number: 6 (lower is better)
Translates to: SVRCPLYKNSPH*TSASRLPLRLK
Trigger: TTTCAGTCTTAGCGGAAGTCTGCTTGCAGATGTTCAGTGGGGAGAGTTTTTATACAGCGGACAGCGCACGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS CAA 72 bp AAATACCAGCTCGGCTGTATGGCGATCTCACTCTGGTaGAGTGTTCTTTCTCGAAGCCTCAGTTCCAGGCAT +
Preference number: 6 (lower is better)
Translates to: KYQLGCMAISLW*SVLSRSLSSRH
Trigger: ATGCCTGGAACTGAGGCTTCGAGAAAGAACACTCAACCAGAGTGAGATCGCCATACAGCCGAGCTGGTATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS CAA 72 bp TTGGGGAAACAGCTTAGTAACTGCCGCACCGCTTCTTaGAAGGTGTCTGTCGCCTTACTATCCACATGCACA +
Preference number: 6 (lower is better)
Translates to: LGKQLSNCRTAS*KVSVALLSTCT
Trigger: TGTGCATGTGGATAGTAAGGCGACAGACACCTTCAAAGAAGCGGTGCGGCAGTTACTAAGCTGTTTCCCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067778.8
ENSMUST00000225759.2
CDS CAA 90 bp GAAGCGGGCTTCTTCTTCAGAGAGAGTCTCTGTTATGTAGTGGTTTaGAATCTTGTACTCGGGGCAGGTGAAGTTTTCCAGGGTGGTTTT +
Preference number: 6 (lower is better)
Translates to: EAGFFFRESLCYVVV*NLVLGAGEVFQGGF
Trigger: AAAACCACCCTGGAAAACTTCACCTGCCCCGAGTACAAGATTCAAAACCACTACATAACAGAGACTCTCTCTGAAGAAGAAGCCCGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS CCA 72 bp GTGTCCTTGGACCAGGAGATTAAGTCTACTGAACGCTaGTCTTTGAGGACAAAGTTAGCAAATTCCCGTGTG +
Preference number: 6 (lower is better)
Translates to: VSLDQEIKSTER*SLRTKLANSRV
Trigger: CACACGGGAATTTGCTAACTTTGTCCTCAAAGACCAGCGTTCAGTAGACTTAATCTCCTGGTCCAAGGACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS CAA 90 bp TCTCGAAGCCTCAGTTCCAGGCATTCCACGGTAAGAGGGTATGTGTaGAGTTCAAATTTGTTAGCAAACAGGCTTTGCGAATTAATCAGC +
Preference number: 6 (lower is better)
Translates to: SRSLSSRHSTVRGYV*SSNLLANRLCELIS
Trigger: GCTGATTAATTCGCAAAGCCTGTTTGCTAACAAATTTGAACTCAACACATACCCTCTTACCGTGGAATGCCTGGAACTGAGGCTTCGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS TCA 72 bp CTTTGGGTCACATATTCTGTGCAAGAAGGCTTCTCGTaGATCATTAGTTTGTTTCTCCACAGGAACCGGCTT +
Preference number: 6 (lower is better)
Translates to: LWVTYSVQEGFS*IISLFLHRNRL
Trigger: AAGCCGGTTCCTGTGGAGAAACAAACTAATGATTCACGAGAAGCCTTCTTGCACAGAATATGTGACCCAAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000069958.15
CDS TCA 72 bp AAGGAAAATCGACCTCTTCCTGAGATAAAGGGGCAGTaGTATAGTGGCTTTGGGTCACATATTCTGTGCAAG +
Preference number: 6 (lower is better)
Translates to: KENRPLPEIKGQ*YSGFGSHILCK
Trigger: CTTGCACAGAATATGTGACCCAAAGCCACTATATCACTGCCCCTTTATCTCAGGAAGAGGTCGATTTTCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000069958.15
CDS CCA 72 bp ACATCTGCAAGCAGACTTCCGCTAAGACTGAAATATTaGAAACCGCCCTCGGGAAATGATAGTTCTTCCATA +
Preference number: 6 (lower is better)
Translates to: TSASRLPLRLKY*KPPSGNDSSSI
Trigger: TATGGAAGAACTATCATTTCCCGAGGGCGGTTTCCAATATTTCAGTCTTAGCGGAAGTCTGCTTGCAGATGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS CAA 72 bp CTCAGTTCCAGGCATTCCACGGTAAGAGGGTATGTGTaGAGTTCAAATTTGTTAGCAAACAGGCTTTGCGAA +
Preference number: 6 (lower is better)
Translates to: LSSRHSTVRGYV*SSNLLANRLCE
Trigger: TTCGCAAAGCCTGTTTGCTAACAAATTTGAACTCAACACATACCCTCTTACCGTGGAATGCCTGGAACTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS CAA 90 bp AGTTCCAGGCATTCCACGGTAAGAGGGTATGTGTTGAGTTCAAATTaGTTAGCAAACAGGCTTTGCGAATTAATCAGCCACTGCAAGTCT +
Preference number: 6 (lower is better)
Translates to: SSRHSTVRGYVLSSN*LANRLCELISHCKS
Trigger: AGACTTGCAGTGGCTGATTAATTCGCAAAGCCTGTTTGCTAACAAATTTGAACTCAACACATACCCTCTTACCGTGGAATGCCTGGAACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS CAA 72 bp TTCTTCTTCAGAGAGAGTCTCTGTTATGTAGTGGTTTaGAATCTTGTACTCGGGGCAGGTGAAGTTTTCCAG +
Preference number: 6 (lower is better)
Translates to: FFFRESLCYVVV*NLVLGAGEVFQ
Trigger: CTGGAAAACTTCACCTGCCCCGAGTACAAGATTCAAAACCACTACATAACAGAGACTCTCTCTGAAGAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110191.10
CDS CAA 72 bp CATTCCACGGTAAGAGGGTATGTGTTGAGTTCAAATTaGTTAGCAAACAGGCTTTGCGAATTAATCAGCCAC +
Preference number: 6 (lower is better)
Translates to: HSTVRGYVLSSN*LANRLCELISH
Trigger: GTGGCTGATTAATTCGCAAAGCCTGTTTGCTAACAAATTTGAACTCAACACATACCCTCTTACCGTGGAATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS CAA 90 bp GGTAAGAGGGTATGTGTTGAGTTCAAATTTGTTAGCAAACAGGCTTaGCGAATTAATCAGCCACTGCAAGTCTCCGTTTCCATAGATACA +
Preference number: 6 (lower is better)
Translates to: GKRVCVEFKFVSKQA*RINQPLQVSVSIDT
Trigger: TGTATCTATGGAAACGGAGACTTGCAGTGGCTGATTAATTCGCAAAGCCTGTTTGCTAACAAATTTGAACTCAACACATACCCTCTTACC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067778.8
ENSMUST00000069958.15
ENSMUST00000110191.10
CDS CCA 72 bp TTATGCATAAAATATCCGTCTTTGCCTTTGCGTTCCTaGTGTACATATTTAGTCCGTACAACTATGTACGCA +
Preference number: 6 (lower is better)
Translates to: LCIKYPSLPLRS*CTYLVRTTMYA
Trigger: TGCGTACATAGTTGTACGGACTAAATATGTACACCAGGAACGCAAAGGCAAAGACGGATATTTTATGCATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067778.8
ENSMUST00000225759.2