Pregenerated sensors for GCHFR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046814Ensembl transcript IDs: ENSMUST00000057454.4
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATCCAGGGACTGTCCTCGTCCTCGGGTTGGCTTGCCTTCAGCATGTaGCCTACAGCAAGAGCCAGGGTCAGGCCTAGCTGGGGGAAGCTG | + |
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Preference number: 1 (lower is better) Translates to: IQGLSSSSGWLAFSM*PTARARVRPSWGKL Trigger: CAGCTTCCCCCAGCTAGGCCTGACCCTGGCTCTTGCTGTAGGCCACATGCTGAAGGCAAGCCAACCCGAGGACGAGGACAGTCCCTGGAT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| 3UTR-3UTR GCA 90 bp | GGACTGTCCTCGTCCTCGGGTTGGCTTGCCTTCAGCATGTGGCCTACAGCAAGAGGCAGGAGCCTGCTGTaGCCAACCAGCTGGAGCGAG | + |
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Preference number: 2 (lower is better) Translates to: GLSSSSGWLAFSMWPTARGRSLL*PTSWSE Trigger: CTCGCTCCAGCTGGTTGGGCACAGCAGGCTCCTGCC...TCTTGCTGTAGGCCACATGCTGAAGGCAAGCCAACCCGAGGACGAGGACAGTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| 3UTR-3UTR CCA 90 bp | TTGCCTTCAGCATGTGGCCTACAGCAAGAGCCAGGGTCAGGCCTAGCTGGGGGAAGGGAGTTGACAATTTaGAAAGAGATAGGCAGGGCA | + |
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Preference number: 2 (lower is better) Translates to: LPSACGLQQEPGSGLAGGRELTI*KEIGRA Trigger: TGCCCTGCCTATCTCTTTCCAAATTGTCAACTCCCT...TCCCCCAGCTAGGCCTGACCCTGGCTCTTGCTGTAGGCCACATGCTGAAGGCAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| 3UTR-3UTR CCA 90 bp | GCAAGGGAGTTGACAATTTGGAAAGAGATAGGCAGGGCAAACAGTGATGCAAGGTGTGGGCAGGGCACATaGCGGTCTCTGAACAGGTCA | + |
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Preference number: 2 (lower is better) Translates to: ARELTIWKEIGRANSDARCGQGT*RSLNRS Trigger: TGACCTGTTCAGAGACCGCCATGTGCCCTGCCCACA...CCTTGCATCACTGTTTGCCCTGCCTATCTCTTTCCAAATTGTCAACTCCCTTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| 3UTR CCA 72 bp | AAAGAGATAGGCAGGGCAAACAGTGATGCAAGGATGTaGGCAGGGCACATGGCGGTCTCTGAACAGGTCAGC | + |
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Preference number: 3 (lower is better) Translates to: KEIGRANSDARM*AGHMAVSEQVS Trigger: GCTGACCTGTTCAGAGACCGCCATGTGCCCTGCCCACATCCTTGCATCACTGTTTGCCCTGCCTATCTCTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| 3UTR-3UTR CAA 90 bp | TGTGCCCAACCAGCTGGAGCGAGGTCCCTTAGGCTGTTCACAGCCCACCAGTATAAGGGAGTTGACAATTaGGAAAGAGATAGGCAGGGC | + |
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Preference number: 3 (lower is better) Translates to: CAQPAGARSLRLFTAHQYKGVDN*ERDRQG Trigger: GCCCTGCCTATCTCTTTCCAAATTGTCAACTCCCTT...ATACTGGTGGGCTGTGAACAGCCTAAGGGACCTCGCTCCAGCTGGTTGGGCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| 3UTR TCA 72 bp | GTTGACAATTTGGAAAGAGATAGGCAGGGCAAACAGTaGTGCAAGGATGTGGGCAGGGCACATGGCGGTCTC | + |
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Preference number: 3 (lower is better) Translates to: VDNLERDRQGKQ*CKDVGRAHGGL Trigger: GAGACCGCCATGTGCCCTGCCCACATCCTTGCATCACTGTTTGCCCTGCCTATCTCTTTCCAAATTGTCAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| 3UTR-3UTR CAA 90 bp | TCCTCGGGTTGGCTTGCCTTCAGCATGTGGCCTACAGCAAGAGCCAGGGTCAGGTATTGGGCAAGGGAGTaGACAATTTGGAAAGAGATA | + |
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Preference number: 3 (lower is better) Translates to: SSGWLAFSMWPTARARVRYWARE*TIWKEI Trigger: TATCTCTTTCCAAATTGTCAACTCCCTTGCCCAATA...CCTGACCCTGGCTCTTGCTGTAGGCCACATGCTGAAGGCAAGCCAACCCGAGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| CDS-3UTR CCA 90 bp | AAGCTGAAAGCACCAGGGCAGGAGCCTGCTGTGCCCAACCAGCTGGAGCGAGGTCATCACCCACCATGGTaGGGCCCACCTCCATACGGA | + |
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Preference number: 4 (lower is better) Translates to: KLKAPGQEPAVPNQLERGHHPPW*GPPPYG Trigger: TCCGTATGGAGGTGGGCCCCACCATGGTGGGTGATG...ACCTCGCTCCAGCTGGTTGGGCACAGCAGGCTCCTGCCCTGGTGCTTTCAGCTT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| CDS-3UTR CCA 90 bp | GTCCTCGTCCTCGGGTTGGCTTGCCTTCAGCATGTGGCCTACAGCAAGAGCCAGCACCACACCAGCGTCTaGCCCACCCCTGTCATGCTC | + |
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Preference number: 4 (lower is better) Translates to: VLVLGLACLQHVAYSKSQHHTSV*PTPVML Trigger: GAGCATGACAGGGGTGGGCCAGACGCTGGTGTGGTG...CTGGCTCTTGCTGTAGGCCACATGCTGAAGGCAAGCCAACCCGAGGACGAGGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| CDS-3UTR GCA 90 bp | CAACCAGCTGGAGCGAGGTCCCTTAGGCTGTTCACAGCCCACCAGTATTGGGCATTGGAGGCCCCCAGGTaGTGCATCAGCTCCGGATCC | + |
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Preference number: 4 (lower is better) Translates to: QPAGARSLRLFTAHQYWALEAPR*CISSGS Trigger: GGATCCGGAGCTGATGCAGCACCTGGGGGCCTCCAA...TGCCCAATACTGGTGGGCTGTGAACAGCCTAAGGGACCTCGCTCCAGCTGGTTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| CDS-3UTR CCA 90 bp | AAGCTGAAAGCACCAGGGCAGGAGCCTGCTGTGCCCAACCAGCTGGAGCGAGGTCCAAGACACTTCTCTTaGAGGCCCCCAGGTGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: KLKAPGQEPAVPNQLERGPRHFS*RPPGAA Trigger: TGCAGCACCTGGGGGCCTCCAAGAGAAGTGTCTTGG...ACCTCGCTCCAGCTGGTTGGGCACAGCAGGCTCCTGCCCTGGTGCTTTCAGCTT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| CDS-3UTR CCA 90 bp | TGGCTTGCCTTCAGCATGTGGCCTACAGCAAGAGCCAGGGTCAGGCCTAGCTGGGTTCATCACCCACCATaGTGGGGCCCACCTCCATAC | + |
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Preference number: 4 (lower is better) Translates to: WLAFSMWPTARARVRPSWVHHPP*WGPPPY Trigger: GTATGGAGGTGGGCCCCACCATGGTGGGTGATGAAC...CCAGCTAGGCCTGACCCTGGCTCTTGCTGTAGGCCACATGCTGAAGGCAAGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| CDS-3UTR GCA 90 bp | TCCTCGGGTTGGCTTGCCTTCAGCATGTGGCCTACAGCAAGAGCCAGGGTCAGGGCACTCGGAAGCCCTTaGATTCCAGCTTGTCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: SSGWLAFSMWPTARARVRALGSP*IPACPG Trigger: TCCTGGACAAGCTGGAATGCAAGGGCTTCCGAGTGC...CCTGACCCTGGCTCTTGCTGTAGGCCACATGCTGAAGGCAAGCCAACCCGAGGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| 3UTR CAA 72 bp | AGGCTGTTCACAGCCCACCAGTATTGGGCAAGGGAGTaGACAATTTGGAAAGAGATAGGCAGGGCAAACAGT | + |
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Preference number: 4 (lower is better) Translates to: RLFTAHQYWARE*TIWKEIGRANS Trigger: ACTGTTTGCCCTGCCTATCTCTTTCCAAATTGTCAACTCCCTTGCCCAATACTGGTGGGCTGTGAACAGCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| CDS-3UTR CAA 90 bp | GAAGCTGAAAGCACCAGGGCAGGAGCCTGCTGTGCCCAACCAGCTGGAGCGAGGCCCAAGACACTTCTCTaGGAGGCCCCCAGGTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: EAESTRAGACCAQPAGARPKTLL*EAPRCC Trigger: GCAGCACCTGGGGGCCTCCAAGAGAAGTGTCTTGGG...CCTCGCTCCAGCTGGTTGGGCACAGCAGGCTCCTGCCCTGGTGCTTTCAGCTTC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| CDS-3UTR CAA 90 bp | AAGCTGAAAGCACCAGGGCAGGAGCCTGCTGTGCCCAACCAGCTGGAGCGAGGTAGCACTCGGAAGCCCTaGCATTCCAGCTTGTCCAGG | + |
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Preference number: 5 (lower is better) Translates to: KLKAPGQEPAVPNQLERGSTRKP*HSSLSR Trigger: CCTGGACAAGCTGGAATGCAAGGGCTTCCGAGTGCT...ACCTCGCTCCAGCTGGTTGGGCACAGCAGGCTCCTGCCCTGGTGCTTTCAGCTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| CDS GCA 90 bp | ATTCCTTGTGCAGACACCACACCAGCGTCTGGCCCACCCCTGTCATaGTCAGCACTCGGAAGCCCTTGCATTCCAGCTTGTCCAGGACTA | + |
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Preference number: 5 (lower is better) Translates to: IPCADTTPASGPPLS*SALGSPCIPACPGL Trigger: TAGTCCTGGACAAGCTGGAATGCAAGGGCTTCCGAGTGCTGAGCATGACAGGGGTGGGCCAGACGCTGGTGTGGTGTCTGCACAAGGAAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| CDS-3UTR CAA 90 bp | TGTGCCCAACCAGCTGGAGCGAGGTCCCTTAGGCTGTTCACAGCCCACCAGTATCCCTTGCATTCCAGCTaGTCCAGGACTATGCGAGGA | + |
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Preference number: 5 (lower is better) Translates to: CAQPAGARSLRLFTAHQYPLHSS*SRTMRG Trigger: TCCTCGCATAGTCCTGGACAAGCTGGAATGCAAGGG...ATACTGGTGGGCTGTGAACAGCCTAAGGGACCTCGCTCCAGCTGGTTGGGCACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| CDS CAA 90 bp | ACCAGCGTCTGGCCCACCCCTGTCATGCTCAGCACTCGGAAGCCCTaGCATTCCAGCTTGTCCAGGACTATGCGAGGAGGGTCGTTGACG | + |
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Preference number: 6 (lower is better) Translates to: TSVWPTPVMLSTRKP*HSSLSRTMRGGSLT Trigger: CGTCAACGACCCTCCTCGCATAGTCCTGGACAAGCTGGAATGCAAGGGCTTCCGAGTGCTGAGCATGACAGGGGTGGGCCAGACGCTGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| CDS GCA 72 bp | GGCCCACCCCTGTCATGCTCAGCACTCGGAAGCCCTTaGATTCCAGCTTGTCCAGGACTATGCGAGGAGGGT | + |
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Preference number: 6 (lower is better) Translates to: GPPLSCSALGSP*IPACPGLCEEG Trigger: ACCCTCCTCGCATAGTCCTGGACAAGCTGGAATGCAAGGGCTTCCGAGTGCTGAGCATGACAGGGGTGGGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| CDS GCA 72 bp | GCAGACACCACACCAGCGTCTGGCCCACCCCTGTCATaGTCAGCACTCGGAAGCCCTTGCATTCCAGCTTGT | + |
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Preference number: 6 (lower is better) Translates to: ADTTPASGPPLS*SALGSPCIPAC Trigger: ACAAGCTGGAATGCAAGGGCTTCCGAGTGCTGAGCATGACAGGGGTGGGCCAGACGCTGGTGTGGTGTCTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| CDS CAA 72 bp | TGGCCCACCCCTGTCATGCTCAGCACTCGGAAGCCCTaGCATTCCAGCTTGTCCAGGACTATGCGAGGAGGG | + |
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Preference number: 6 (lower is better) Translates to: WPTPVMLSTRKP*HSSLSRTMRGG Trigger: CCCTCCTCGCATAGTCCTGGACAAGCTGGAATGCAAGGGCTTCCGAGTGCTGAGCATGACAGGGGTGGGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| CDS GCA 72 bp | TTTCCCAAGACACTTCTCTTGGAGGCCCCCAGGTGCTaGATCAGCTCCGGATCCGAGTGTTCATCACCCACC | + |
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Preference number: 6 (lower is better) Translates to: FPKTLLLEAPRC*ISSGSECSSPT Trigger: GGTGGGTGATGAACACTCGGATCCGGAGCTGATGCAGCACCTGGGGGCCTCCAAGAGAAGTGTCTTGGGAAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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| CDS TCA 72 bp | ATTCCAGCTTGTCCAGGACTATGCGAGGAGGGTCGTTaGCGTAGTATTCGTAAAAGTTGTTTCCCAAGACAC | + |
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Preference number: 6 (lower is better) Translates to: IPACPGLCEEGR*RSIRKSCFPRH Trigger: GTGTCTTGGGAAACAACTTTTACGAATACTACGTCAACGACCCTCCTCGCATAGTCCTGGACAAGCTGGAAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000057454.4 |
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