RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GCG (Mus musculus)

Ensembl gene IDs: ENSMUSG00000000394

Ensembl transcript IDs: ENSMUST00000102733.10, ENSMUST00000136686.2

Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGCAATATAGCTTCAGGATATAGCTTTGAAATTGTACATCCCAAGTaGCTGGCACGAGATGTTGTGAAGATGGTTGTGAATGGTGAAATA +
Preference number: 1 (lower is better)
Translates to: SNIASGYSFEIVHPK*LARDVVKMVVNGEI
Trigger: TATTTCACCATTCACAACCATCTTCACAACATCTCGTGCCAGTCACTTGGGATGTACAATTTCAAAGCTATATCCTGAAGCTATATTGCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
3UTR-3UTR GCA 90 bp AAGAAGTTCTCTTTCCAGGTTTACCACTACGGTTACCAGGTGGTCATGTCTTCTGGAAATGTATTCATCTaGATGCAAAGCAATATAGCT +
Preference number: 2 (lower is better)
Translates to: KKFSFQVYHYGYQVVMSSGNVFI*MQSNIA
Trigger: AGCTATATTGCTTTGCATGCAGATGAATACATTTCC...AGAAGACATGACCACCTGGTAACCGTAGTGGTAAACCTGGAAAGAGAACTTCTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
3UTR-3UTR CAA 90 bp AAGAAGTTCTCTTTCCAGGTTTACCACTACGGTTACCAGGTGGTCATGTCTTCTGATATAGCTTTGAAATaGTACATCCCAAGTGACTGG +
Preference number: 3 (lower is better)
Translates to: KKFSFQVYHYGYQVVMSSDIALK*YIPSDW
Trigger: CCAGTCACTTGGGATGTACAATTTCAAAGCTATATC...AGAAGACATGACCACCTGGTAACCGTAGTGGTAAACCTGGAAAGAGAACTTCTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
3UTR TCA 72 bp GCTTCAGGATATAGCTTTGAAATTGTACATCCCAAGTaGCTGGCACGAGATGTTGTGAAGATGGTTGTGAAT +
Preference number: 3 (lower is better)
Translates to: ASGYSFEIVHPK*LARDVVKMVVN
Trigger: ATTCACAACCATCTTCACAACATCTCGTGCCAGTCACTTGGGATGTACAATTTCAAAGCTATATCCTGAAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS-3UTR TCA 90 bp GAAGTTCTCTTTCCAGGTTTACCACTACGGTTACCAGGTGGTCATGTCTTCTGTTGCTGTAGTCGCTGGTaGATGTGCCCTGTGAGTGGC +
Preference number: 4 (lower is better)
Translates to: EVLFPGLPLRLPGGHVFCCCSRW*MCPVSG
Trigger: GCCACTCACAGGGCACATTCACCAGCGACTACAGCA...ACAGAAGACATGACCACCTGGTAACCGTAGTGGTAAACCTGGAAAGAGAACTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS-3UTR TCA 90 bp GAAGTTCTCTTTCCAGGTTTACCACTACGGTTACCAGGTGGTCATGTCTTCTGTCTGGGAAGCTGGGAATaGTCTGGGGTTCTCCTCTGT +
Preference number: 4 (lower is better)
Translates to: EVLFPGLPLRLPGGHVFCLGSWE*SGVLLC
Trigger: ACAGAGGAGAACCCCAGATCATTCCCAGCTTCCCAG...ACAGAAGACATGACCACCTGGTAACCGTAGTGGTAAACCTGGAAAGAGAACTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS-3UTR TCA 90 bp AAAGGATTCAAGGAAGAAGTTCTCTTTCCAGGTTTACCACTACGGTTACCAGGTTTCTCCTCTGTGTCTTaGAGGGCGTGCTGCCAGCTG +
Preference number: 4 (lower is better)
Translates to: KGFKEEVLFPGLPLRLPGFSSVS*RACCQL
Trigger: CAGCTGGCAGCACGCCCTTCAAGACACAGAGGAGAA...ACCTGGTAACCGTAGTGGTAAACCTGGAAAGAGAACTTCTTCCTTGAATCCTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS-3UTR CCA 90 bp CAATCGTTGGGTTACACAATGCTAGAGGGAAATGTATTCATCTGCATGCAAAGCCACTGCACAAAATCTTaGGCACGGCGGGAGTCCAGG +
Preference number: 4 (lower is better)
Translates to: QSLGYTMLEGNVFICMQSHCTKS*ARRESR
Trigger: CCTGGACTCCCGCCGTGCCCAAGATTTTGTGCAGTG...GCTTTGCATGCAGATGAATACATTTCCCTCTAGCATTGTGTAACCCAACGATTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS-3UTR CCA 90 bp GAAGTTCTCTTTCCAGGTTTACCACTACGGTTACCAGGTGGTCATGTCTTCTGTCGAGTTCCTCGGCAATaGCGACTTCTTCTGGGAAGT +
Preference number: 4 (lower is better)
Translates to: EVLFPGLPLRLPGGHVFCRVPRQ*RLLLGS
Trigger: ACTTCCCAGAAGAAGTCGCCATTGCCGAGGAACTCG...ACAGAAGACATGACCACCTGGTAACCGTAGTGGTAAACCTGGAAAGAGAACTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS-3UTR CCA 90 bp GAAGTTCTCTTTCCAGGTTTACCACTACGGTTACCAGGTGGTCATGTCTTCTGTTCATGCGCTTCTGTCTaGGAAGCTGGGAATGATCTG +
Preference number: 4 (lower is better)
Translates to: EVLFPGLPLRLPGGHVFCSCASV*EAGNDL
Trigger: CAGATCATTCCCAGCTTCCCAGACAGAAGCGCATGA...ACAGAAGACATGACCACCTGGTAACCGTAGTGGTAAACCTGGAAAGAGAACTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS-3UTR GCA 90 bp CAATCGTTGGGTTACACAATGCTAGAGGGAAATGTATTCATCTGCATGCAAAGCTCATCAGGGTCCTCATaGGCTTCTGTCTGGGAAGCT +
Preference number: 4 (lower is better)
Translates to: QSLGYTMLEGNVFICMQSSSGSS*ASVWEA
Trigger: AGCTTCCCAGACAGAAGCGCATGAGGACCCTGATGA...GCTTTGCATGCAGATGAATACATTTCCCTCTAGCATTGTGTAACCCAACGATTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS-3UTR CCA 90 bp GAAGTTCTCTTTCCAGGTTTACCACTACGGTTACCAGGTGGTCATGTCTTCTGTAAGCTGGGAATGATCTaGGGTTCTCCTCTGTGTCTT +
Preference number: 4 (lower is better)
Translates to: EVLFPGLPLRLPGGHVFCKLGMI*GSPLCL
Trigger: AAGACACAGAGGAGAACCCCAGATCATTCCCAGCTT...ACAGAAGACATGACCACCTGGTAACCGTAGTGGTAAACCTGGAAAGAGAACTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS-3UTR CCA 90 bp GAAGTTCTCTTTCCAGGTTTACCACTACGGTTACCAGGTGGTCATGTCTTCTGTTGTTCCGGTTCCTCTTaGTGTTCATCAACCACTGCA +
Preference number: 4 (lower is better)
Translates to: EVLFPGLPLRLPGGHVFCCSGSS*CSSTTA
Trigger: TGCAGTGGTTGATGAACACCAAGAGGAACCGGAACA...ACAGAAGACATGACCACCTGGTAACCGTAGTGGTAAACCTGGAAAGAGAACTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS-3UTR TCA 90 bp AAAGGATTCAAGGAAGAAGTTCTCTTTCCAGGTTTACCACTACGGTTACCAGGTGGTGAATGTGCCCTGTaGGTGGCGTTTGTCTTCATT +
Preference number: 4 (lower is better)
Translates to: KGFKEEVLFPGLPLRLPGGECAL*VAFVFI
Trigger: AATGAAGACAAACGCCACTCACAGGGCACATTCACC...ACCTGGTAACCGTAGTGGTAAACCTGGAAAGAGAACTTCTTCCTTGAATCCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS-3UTR GCA 90 bp AAGGAAGAAGTTCTCTTTCCAGGTTTACCACTACGGTTACCAGGTGGTCATGTCAATGAATTCCTTTGCTaGCTGGCCCTCCAAGTAAGA +
Preference number: 4 (lower is better)
Translates to: KEEVLFPGLPLRLPGGHVNEFLC*LALQVR
Trigger: TCTTACTTGGAGGGCCAGGCAGCAAAGGAATTCATT...GACATGACCACCTGGTAACCGTAGTGGTAAACCTGGAAAGAGAACTTCTTCCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS-3UTR GCA 90 bp AAGAAGTTCTCTTTCCAGGTTTACCACTACGGTTACCAGGTGGTCATGTCTTCTAGCAATGAATTCCTTTaGTGCCTGGCCCTCCAAGTA +
Preference number: 4 (lower is better)
Translates to: KKFSFQVYHYGYQVVMSSSNEFL*CLALQV
Trigger: TACTTGGAGGGCCAGGCAGCAAAGGAATTCATTGCT...AGAAGACATGACCACCTGGTAACCGTAGTGGTAAACCTGGAAAGAGAACTTCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS-3UTR GCA 90 bp AAAGGATTCAAGGAAGAAGTTCTCTTTCCAGGTTTACCACTACGGTTACCAGGTTGCTGCCAGCTGCCTTaGACCAGCATTATAAGCAAT +
Preference number: 4 (lower is better)
Translates to: KGFKEEVLFPGLPLRLPGCCQLP*TSIISN
Trigger: ATTGCTTATAATGCTGGTGCAAGGCAGCTGGCAGCA...ACCTGGTAACCGTAGTGGTAAACCTGGAAAGAGAACTTCTTCCTTGAATCCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS-3UTR GCA 90 bp CAATCGTTGGGTTACACAATGCTAGAGGGAAATGTATTCATCTGCATGCAAAGCGTGTTCATCAACCACTaGACAAAATCTTGGGCACGG +
Preference number: 4 (lower is better)
Translates to: QSLGYTMLEGNVFICMQSVFINH*TKSWAR
Trigger: CCGTGCCCAAGATTTTGTGCAGTGGTTGATGAACAC...GCTTTGCATGCAGATGAATACATTTCCCTCTAGCATTGTGTAACCCAACGATTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS-3UTR CCA 90 bp AAAGGATTCAAGGAAGAAGTTCTCTTTCCAGGTTTACCACTACGGTTACCAGGTAATGTGCCCTGTGAGTaGCGTTTGTCTTCATTCATC +
Preference number: 4 (lower is better)
Translates to: KGFKEEVLFPGLPLRLPGNVPCE*RLSSFI
Trigger: GATGAATGAAGACAAACGCCACTCACAGGGCACATT...ACCTGGTAACCGTAGTGGTAAACCTGGAAAGAGAACTTCTTCCTTGAATCCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS-3UTR CCA 90 bp AAGAAGTTCTCTTTCCAGGTTTACCACTACGGTTACCAGGTGGTCATGTCTTCTCAAGATTATCCAGAATaGTGCTCATCTCGTCAGAGA +
Preference number: 4 (lower is better)
Translates to: KKFSFQVYHYGYQVVMSSQDYPE*CSSRQR
Trigger: TCTCTGACGAGATGAGCACCATTCTGGATAATCTTG...AGAAGACATGACCACCTGGTAACCGTAGTGGTAAACCTGGAAAGAGAACTTCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS-3UTR CCA 90 bp CAATCGTTGGGTTACACAATGCTAGAGGGAAATGTATTCATCTGCATGCAAAGCATTCATCATGACGTTTaGCAATGTTGTTCCGGTTCC +
Preference number: 4 (lower is better)
Translates to: QSLGYTMLEGNVFICMQSIHHDV*QCCSGS
Trigger: GGAACCGGAACAACATTGCCAAACGTCATGATGAAT...GCTTTGCATGCAGATGAATACATTTCCCTCTAGCATTGTGTAACCCAACGATTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS-3UTR TCA 90 bp AAAGGATTCAAGGAAGAAGTTCTCTTTCCAGGTTTACCACTACGGTTACCAGGTCTCTCAAATTCATCATaGCGTTTGGCAATGTTGTTC +
Preference number: 4 (lower is better)
Translates to: KGFKEEVLFPGLPLRLPGLSNSS*RLAMLF
Trigger: GAACAACATTGCCAAACGTCATGATGAATTTGAGAG...ACCTGGTAACCGTAGTGGTAAACCTGGAAAGAGAACTTCTTCCTTGAATCCTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS GCA 90 bp CCAGAATGGTGCTCATCTCGTCAGAGAAGGAGCCATCAGCGTGCCTaGGGCCGAGTTCCTCGGCAATGGCGACTTCTTCTGGGAAGTCTC +
Preference number: 5 (lower is better)
Translates to: PEWCSSRQRRSHQRA*GRVPRQWRLLLGSL
Trigger: GAGACTTCCCAGAAGAAGTCGCCATTGCCGAGGAACTCGGCCGCAGGCACGCTGATGGCTCCTTCTCTGACGAGATGAGCACCATTCTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS CCA 90 bp ATCAGCGTGCCTGCGGCCGAGTTCCTCGGCAATGGCGACTTCTTCTaGGAAGTCTCGCCTTCCTCGGCCTTTCACCAGCCAAGCAATGAA +
Preference number: 5 (lower is better)
Translates to: ISVPAAEFLGNGDFF*EVSPSSAFHQPSNE
Trigger: TTCATTGCTTGGCTGGTGAAAGGCCGAGGAAGGCGAGACTTCCCAGAAGAAGTCGCCATTGCCGAGGAACTCGGCCGCAGGCACGCTGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS CCA 90 bp CATCAGGGTCCTCATGCGCTTCTGTCTGGGAAGCTGGGAATGATCTaGGGTTCTCCTCTGTGTCTTGAAGGGCGTGCTGCCAGCTGCCTT +
Preference number: 5 (lower is better)
Translates to: HQGPHALLSGKLGMI*GSPLCLEGRAASCL
Trigger: AAGGCAGCTGGCAGCACGCCCTTCAAGACACAGAGGAGAACCCCAGATCATTCCCAGCTTCCCAGACAGAAGCGCATGAGGACCCTGATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS GCA 90 bp TTATCCAGAATGGTGCTCATCTCGTCAGAGAAGGAGCCATCAGCGTaGCTGCGGCCGAGTTCCTCGGCAATGGCGACTTCTTCTGGGAAG +
Preference number: 5 (lower is better)
Translates to: LSRMVLISSEKEPSA*LRPSSSAMATSSGK
Trigger: CTTCCCAGAAGAAGTCGCCATTGCCGAGGAACTCGGCCGCAGGCACGCTGATGGCTCCTTCTCTGACGAGATGAGCACCATTCTGGATAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS TCA 90 bp GCGGGAGTCCAGGTATTTGCTGTAGTCGCTGGTGAATGTGCCCTGTaGGTGGCGTTTGTCTTCATTCATCTCATCAGGGTCCTCATGCGC +
Preference number: 5 (lower is better)
Translates to: AGVQVFAVVAGECAL*VAFVFIHLIRVLMR
Trigger: GCGCATGAGGACCCTGATGAGATGAATGAAGACAAACGCCACTCACAGGGCACATTCACCAGCGACTACAGCAAATACCTGGACTCCCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS TCA 90 bp CTTCTGGGAAGTCTCGCCTTCCTCGGCCTTTCACCAGCCAAGCAATaGATTCCTTTGCTGCCTGGCCCTCCAAGTAAGAACTCACATCAC +
Preference number: 5 (lower is better)
Translates to: LLGSLAFLGLSPAKQ*IPLLPGPPSKNSHH
Trigger: GTGATGTGAGTTCTTACTTGGAGGGCCAGGCAGCAAAGGAATTCATTGCTTGGCTGGTGAAAGGCCGAGGAAGGCGAGACTTCCCAGAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS GCA 90 bp CCCTGTGAGTGGCGTTTGTCTTCATTCATCTCATCAGGGTCCTCATaGGCTTCTGTCTGGGAAGCTGGGAATGATCTGGGGTTCTCCTCT +
Preference number: 5 (lower is better)
Translates to: PCEWRLSSFISSGSS*ASVWEAGNDLGFSS
Trigger: AGAGGAGAACCCCAGATCATTCCCAGCTTCCCAGACAGAAGCGCATGAGGACCCTGATGAGATGAATGAAGACAAACGCCACTCACAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS GCA 90 bp TCGCCTTCCTCGGCCTTTCACCAGCCAAGCAATGAATTCCTTTGCTaGCTGGCCCTCCAAGTAAGAACTCACATCACTGGTAAAGGTCCC +
Preference number: 5 (lower is better)
Translates to: SPSSAFHQPSNEFLC*LALQVRTHITGKGP
Trigger: GGGACCTTTACCAGTGATGTGAGTTCTTACTTGGAGGGCCAGGCAGCAAAGGAATTCATTGCTTGGCTGGTGAAAGGCCGAGGAAGGCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS TCA 90 bp AATCTTGGGCACGGCGGGAGTCCAGGTATTTGCTGTAGTCGCTGGTaGATGTGCCCTGTGAGTGGCGTTTGTCTTCATTCATCTCATCAG +
Preference number: 5 (lower is better)
Translates to: NLGHGGSPGICCSRW*MCPVSGVCLHSSHQ
Trigger: CTGATGAGATGAATGAAGACAAACGCCACTCACAGGGCACATTCACCAGCGACTACAGCAAATACCTGGACTCCCGCCGTGCCCAAGATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS GCA 90 bp GTCTCGCCTTCCTCGGCCTTTCACCAGCCAAGCAATGAATTCCTTTaGTGCCTGGCCCTCCAAGTAAGAACTCACATCACTGGTAAAGGT +
Preference number: 5 (lower is better)
Translates to: VSPSSAFHQPSNEFL*CLALQVRTHITGKG
Trigger: ACCTTTACCAGTGATGTGAGTTCTTACTTGGAGGGCCAGGCAGCAAAGGAATTCATTGCTTGGCTGGTGAAAGGCCGAGGAAGGCGAGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS-3UTR CAA 90 bp AAGGAAGAAGTTCTCTTTCCAGGTTTACCACTACGGTTACCAGGTGGTCATGTCGTTCTCCTCTGTGTCTaGAAGGGCGTGCTGCCAGCT +
Preference number: 5 (lower is better)
Translates to: KEEVLFPGLPLRLPGGHVVLLCV*KGVLPA
Trigger: AGCTGGCAGCACGCCCTTCAAGACACAGAGGAGAAC...GACATGACCACCTGGTAACCGTAGTGGTAAACCTGGAAAGAGAACTTCTTCCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS-3UTR CAA 90 bp AAAGGATTCAAGGAAGAAGTTCTCTTTCCAGGTTTACCACTACGGTTACCAGGTCCACTGCACAAAATCTaGGGCACGGCGGGAGTCCAG +
Preference number: 5 (lower is better)
Translates to: KGFKEEVLFPGLPLRLPGPLHKI*GTAGVQ
Trigger: CTGGACTCCCGCCGTGCCCAAGATTTTGTGCAGTGG...ACCTGGTAACCGTAGTGGTAAACCTGGAAAGAGAACTTCTTCCTTGAATCCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS-3UTR CAA 90 bp GAAGTTCTCTTTCCAGGTTTACCACTACGGTTACCAGGTGGTCATGTCTTCTGTGTGCTGCCAGCTGCCTaGCACCAGCATTATAAGCAA +
Preference number: 5 (lower is better)
Translates to: EVLFPGLPLRLPGGHVFCVLPAA*HQHYKQ
Trigger: TTGCTTATAATGCTGGTGCAAGGCAGCTGGCAGCAC...ACAGAAGACATGACCACCTGGTAACCGTAGTGGTAAACCTGGAAAGAGAACTTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS-3UTR CAA 90 bp GAAGTTCTCTTTCCAGGTTTACCACTACGGTTACCAGGTGGTCATGTCTTCTGTCCCTGTGAGTGGCGTTaGTCTTCATTCATCTCATCA +
Preference number: 5 (lower is better)
Translates to: EVLFPGLPLRLPGGHVFCPCEWR*SSFISS
Trigger: TGATGAGATGAATGAAGACAAACGCCACTCACAGGG...ACAGAAGACATGACCACCTGGTAACCGTAGTGGTAAACCTGGAAAGAGAACTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS-3UTR CAA 90 bp AAGAAGTTCTCTTTCCAGGTTTACCACTACGGTTACCAGGTGGTCATGTCTTCTTTGTTCCGGTTCCTCTaGGTGTTCATCAACCACTGC +
Preference number: 5 (lower is better)
Translates to: KKFSFQVYHYGYQVVMSSLFRFL*VFINHC
Trigger: GCAGTGGTTGATGAACACCAAGAGGAACCGGAACAA...AGAAGACATGACCACCTGGTAACCGTAGTGGTAAACCTGGAAAGAGAACTTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS TCA 90 bp ACATCACTGGTAAAGGTCCCTTCAGCATGCCTCTCAAATTCATCATaGCGTTTGGCAATGTTGTTCCGGTTCCTCTTGGTGTTCATCAAC +
Preference number: 5 (lower is better)
Translates to: TSLVKVPSACLSNSS*RLAMLFRFLLVFIN
Trigger: GTTGATGAACACCAAGAGGAACCGGAACAACATTGCCAAACGTCATGATGAATTTGAGAGGCATGCTGAAGGGACCTTTACCAGTGATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS-3UTR CAA 90 bp AAGGAAGAAGTTCTCTTTCCAGGTTTACCACTACGGTTACCAGGTGGTCATGTCGTCAGTGATCTTGGTTaGAATCAGCCAGTTGATGAA +
Preference number: 5 (lower is better)
Translates to: KEEVLFPGLPLRLPGGHVVSDLG*NQPVDE
Trigger: TTCATCAACTGGCTGATTCAAACCAAGATCACTGAC...GACATGACCACCTGGTAACCGTAGTGGTAAACCTGGAAAGAGAACTTCTTCCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000102733.10
CDS CCA 72 bp AGCCATCAGCGTGCCTGCGGCCGAGTTCCTCGGCAATaGCGACTTCTTCTGGGAAGTCTCGCCTTCCTCGGC +
Preference number: 6 (lower is better)
Translates to: SHQRACGRVPRQ*RLLLGSLAFLG
Trigger: GCCGAGGAAGGCGAGACTTCCCAGAAGAAGTCGCCATTGCCGAGGAACTCGGCCGCAGGCACGCTGATGGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS CCA 72 bp CCTGCGGCCGAGTTCCTCGGCAATGGCGACTTCTTCTaGGAAGTCTCGCCTTCCTCGGCCTTTCACCAGCCA +
Preference number: 6 (lower is better)
Translates to: PAAEFLGNGDFF*EVSPSSAFHQP
Trigger: TGGCTGGTGAAAGGCCGAGGAAGGCGAGACTTCCCAGAAGAAGTCGCCATTGCCGAGGAACTCGGCCGCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS GCA 72 bp TGCTCATCTCGTCAGAGAAGGAGCCATCAGCGTGCCTaGGGCCGAGTTCCTCGGCAATGGCGACTTCTTCTG +
Preference number: 6 (lower is better)
Translates to: CSSRQRRSHQRA*GRVPRQWRLLL
Trigger: CAGAAGAAGTCGCCATTGCCGAGGAACTCGGCCGCAGGCACGCTGATGGCTCCTTCTCTGACGAGATGAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS CCA 72 bp CCTCATGCGCTTCTGTCTGGGAAGCTGGGAATGATCTaGGGTTCTCCTCTGTGTCTTGAAGGGCGTGCTGCC +
Preference number: 6 (lower is better)
Translates to: PHALLSGKLGMI*GSPLCLEGRAA
Trigger: GGCAGCACGCCCTTCAAGACACAGAGGAGAACCCCAGATCATTCCCAGCTTCCCAGACAGAAGCGCATGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS TCA 72 bp GAAGCTGGGAATGATCTGGGGTTCTCCTCTGTGTCTTaGAGGGCGTGCTGCCAGCTGCCTTGCACCAGCATT +
Preference number: 6 (lower is better)
Translates to: EAGNDLGFSSVS*RACCQLPCTSI
Trigger: AATGCTGGTGCAAGGCAGCTGGCAGCACGCCCTTCAAGACACAGAGGAGAACCCCAGATCATTCCCAGCTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS TCA 72 bp CACGGCGGGAGTCCAGGTATTTGCTGTAGTCGCTGGTaGATGTGCCCTGTGAGTGGCGTTTGTCTTCATTCA +
Preference number: 6 (lower is better)
Translates to: HGGSPGICCSRW*MCPVSGVCLHS
Trigger: TGAATGAAGACAAACGCCACTCACAGGGCACATTCACCAGCGACTACAGCAAATACCTGGACTCCCGCCGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS TCA 72 bp AGTCTCGCCTTCCTCGGCCTTTCACCAGCCAAGCAATaGATTCCTTTGCTGCCTGGCCCTCCAAGTAAGAAC +
Preference number: 6 (lower is better)
Translates to: SLAFLGLSPAKQ*IPLLPGPPSKN
Trigger: GTTCTTACTTGGAGGGCCAGGCAGCAAAGGAATTCATTGCTTGGCTGGTGAAAGGCCGAGGAAGGCGAGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS GCA 72 bp TGGCGTTTGTCTTCATTCATCTCATCAGGGTCCTCATaGGCTTCTGTCTGGGAAGCTGGGAATGATCTGGGG +
Preference number: 6 (lower is better)
Translates to: WRLSSFISSGSS*ASVWEAGNDLG
Trigger: CCCCAGATCATTCCCAGCTTCCCAGACAGAAGCGCATGAGGACCCTGATGAGATGAATGAAGACAAACGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS CAA 90 bp GTTGTTCCGGTTCCTCTTGGTGTTCATCAACCACTGCACAAAATCTaGGGCACGGCGGGAGTCCAGGTATTTGCTGTAGTCGCTGGTGAA +
Preference number: 6 (lower is better)
Translates to: VVPVPLGVHQPLHKI*GTAGVQVFAVVAGE
Trigger: TTCACCAGCGACTACAGCAAATACCTGGACTCCCGCCGTGCCCAAGATTTTGTGCAGTGGTTGATGAACACCAAGAGGAACCGGAACAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS GCA 72 bp ATGTTGTTCCGGTTCCTCTTGGTGTTCATCAACCACTaGACAAAATCTTGGGCACGGCGGGAGTCCAGGTAT +
Preference number: 6 (lower is better)
Translates to: MLFRFLLVFINH*TKSWARRESRY
Trigger: ATACCTGGACTCCCGCCGTGCCCAAGATTTTGTGCAGTGGTTGATGAACACCAAGAGGAACCGGAACAACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS GCA 72 bp TCGGCCTTTCACCAGCCAAGCAATGAATTCCTTTGCTaGCTGGCCCTCCAAGTAAGAACTCACATCACTGGT +
Preference number: 6 (lower is better)
Translates to: SAFHQPSNEFLC*LALQVRTHITG
Trigger: ACCAGTGATGTGAGTTCTTACTTGGAGGGCCAGGCAGCAAAGGAATTCATTGCTTGGCTGGTGAAAGGCCGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS CAA 72 bp GTTCCTCTTGGTGTTCATCAACCACTGCACAAAATCTaGGGCACGGCGGGAGTCCAGGTATTTGCTGTAGTC +
Preference number: 6 (lower is better)
Translates to: VPLGVHQPLHKI*GTAGVQVFAVV
Trigger: GACTACAGCAAATACCTGGACTCCCGCCGTGCCCAAGATTTTGTGCAGTGGTTGATGAACACCAAGAGGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS TCA 72 bp CAGGTATTTGCTGTAGTCGCTGGTGAATGTGCCCTGTaGGTGGCGTTTGTCTTCATTCATCTCATCAGGGTC +
Preference number: 6 (lower is better)
Translates to: QVFAVVAGECAL*VAFVFIHLIRV
Trigger: GACCCTGATGAGATGAATGAAGACAAACGCCACTCACAGGGCACATTCACCAGCGACTACAGCAAATACCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2
CDS TCA 72 bp GTAAAGGTCCCTTCAGCATGCCTCTCAAATTCATCATaGCGTTTGGCAATGTTGTTCCGGTTCCTCTTGGTG +
Preference number: 6 (lower is better)
Translates to: VKVPSACLSNSS*RLAMLFRFLLV
Trigger: CACCAAGAGGAACCGGAACAACATTGCCAAACGTCATGATGAATTTGAGAGGCATGCTGAAGGGACCTTTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000102733.10
ENSMUST00000136686.2