Pregenerated sensors for GCDH (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003809Ensembl transcript IDs: ENSMUST00000003907.14, ENSMUST00000109745.8, ENSMUST00000142748.2
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GCTCAAACTCTGTGTGCTATTCCAGCATGGCACAACCCCCAGGCATGTTTATCCCCTTCTCACAAGGTCTaGTCCATCTCAGTGGCTCCT | + |
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Preference number: 2 (lower is better) Translates to: AQTLCAIPAWHNPQACLSPSHKV*SISVAP Trigger: AGGAGCCACTGAGATGGAGCAGACCTTGTGAGAAGG...GGATAAACATGCCTGGGGGTTGTGCCATGCTGGAATAGCACACAGAGTTTGAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| 3UTR-3UTR TCA 90 bp | CTCAAACTCTGTGTGCTATTCCAGCATGGCACAACCCCCAGGCATGTTTATCCCCCATACATTTCTTCTTaGGCAGACTCAGGGCAAAGT | + |
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Preference number: 2 (lower is better) Translates to: LKLCVLFQHGTTPRHVYPPYISS*ADSGQS Trigger: ACTTTGCCCTGAGTCTGCTCAAGAAGAAATGTATGG...GGGATAAACATGCCTGGGGGTTGTGCCATGCTGGAATAGCACACAGAGTTTGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| 3UTR-3UTR TCA 90 bp | GCTCAAACTCTGTGTGCTATTCCAGCATGGCACAACCCCCAGGCATGTTTATCCCCAGTTAAAAAGGGCTaGGGGCCATACAGAGAATTA | + |
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Preference number: 2 (lower is better) Translates to: AQTLCAIPAWHNPQACLSPVKKG*GPYREL Trigger: TAATTCTCTGTATGGCCCTCAGCCCTTTTTAACTGG...GGATAAACATGCCTGGGGGTTGTGCCATGCTGGAATAGCACACAGAGTTTGAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| 3UTR-3UTR TCA 90 bp | AACTCTGTGTGCTATTCCAGCATGGCACAACCCCCAGGCATGTTTATCCCTCCTCCAGTTAAAAAGGGCTaGGGGCCATACAGAGAATTA | + |
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Preference number: 2 (lower is better) Translates to: NSVCYSSMAQPPGMFIPPPVKKG*GPYREL Trigger: TAATTCTCTGTATGGCCCTCAGCCCTTTTTAACTGG...AGGAGGGATAAACATGCCTGGGGGTTGTGCCATGCTGGAATAGCACACAGAGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| 3UTR-3UTR TCA 90 bp | TCTTATCTGTTCAGTGCACATAGAAGGCACTGCCCCTGGGATAGAGGCAAGGTACCATACATTTCTTCTTaGGCAGACTCAGGGCAAAGT | + |
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Preference number: 2 (lower is better) Translates to: SYLFSAHRRHCPWDRGKVPYISS*ADSGQS Trigger: ACTTTGCCCTGAGTCTGCTCAAGAAGAAATGTATGG...TACCTTGCCTCTATCCCAGGGGCAGTGCCTTCTATGTGCACTGAACAGATAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| 3UTR-3UTR GCA 90 bp | GGAGTAAGGCACAGGCTCTTTATTTTCATCTCTTATCTGTTCAGTGCACATAGACCTTCTCACAAGGTCTaGTCCATCTCAGTGGCTCCT | + |
|
Preference number: 2 (lower is better) Translates to: GVRHRLFIFISYLFSAHRPSHKV*SISVAP Trigger: AGGAGCCACTGAGATGGAGCAGACCTTGTGAGAAGG...TCTATGTGCACTGAACAGATAAGAGATGAAAATAAAGAGCCTGTGCCTTACTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| 3UTR TCA 72 bp | GCATGGCACAACCCCCAGGCATGTTTATCCCTCCTATaGGAAATTCCCCAAACCACCTCTCCATGGTTACCA | + |
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Preference number: 3 (lower is better) Translates to: AWHNPQACLSLL*EIPQTTSPWLP Trigger: TGGTAACCATGGAGAGGTGGTTTGGGGAATTTCTCATAGGAGGGATAAACATGCCTGGGGGTTGTGCCATGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| 3UTR GCA 72 bp | CCCTGGGATAGAGGCAAGGTAAACTGTAAAGTCCATTaGACCTTCTCACAAGGTCTGCTCCATCTCAGTGGC | + |
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Preference number: 3 (lower is better) Translates to: PWDRGKVNCKVH*TFSQGLLHLSG Trigger: GCCACTGAGATGGAGCAGACCTTGTGAGAAGGTGCAATGGACTTTACAGTTTACCTTGCCTCTATCCCAGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| 3UTR-3UTR CAA 90 bp | CTCAAACTCTGTGTGCTATTCCAGCATGGCACAACCCCCAGGCATGTTTATCCCCTGTGTTACTCCCCTTaGTCTCACCCAGTTCCAAAA | + |
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Preference number: 3 (lower is better) Translates to: LKLCVLFQHGTTPRHVYPLCYSP*SHPVPK Trigger: TTTTGGAACTGGGTGAGACAAAGGGGAGTAACACAG...GGGATAAACATGCCTGGGGGTTGTGCCATGCTGGAATAGCACACAGAGTTTGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| 3UTR-3UTR CAA 90 bp | CTCAAACTCTGTGTGCTATTCCAGCATGGCACAACCCCCAGGCATGTTTATCCCTCCATACATTTCTTCTaGAGCAGACTCAGGGCAAAG | + |
|
Preference number: 3 (lower is better) Translates to: LKLCVLFQHGTTPRHVYPSIHFF*SRLRAK Trigger: CTTTGCCCTGAGTCTGCTCAAGAAGAAATGTATGGA...GGGATAAACATGCCTGGGGGTTGTGCCATGCTGGAATAGCACACAGAGTTTGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| 3UTR-3UTR CAA 90 bp | CATAGAAGGCACTGCCCCTGGGATAGAGGCAAGGTAAACTGTAAAGTCCATTGCTCCATACATTTCTTCTaGAGCAGACTCAGGGCAAAG | + |
|
Preference number: 3 (lower is better) Translates to: HRRHCPWDRGKVNCKVHCSIHFF*SRLRAK Trigger: CTTTGCCCTGAGTCTGCTCAAGAAGAAATGTATGGA...GCAATGGACTTTACAGTTTACCTTGCCTCTATCCCAGGGGCAGTGCCTTCTATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| 3UTR-3UTR CAA 90 bp | GGAGTAAGGCACAGGCTCTTTATTTTCATCTCTTATCTGTTCAGTGCACATAGACTGTGTTACTCCCCTTaGTCTCACCCAGTTCCAAAA | + |
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Preference number: 3 (lower is better) Translates to: GVRHRLFIFISYLFSAHRLCYSP*SHPVPK Trigger: TTTTGGAACTGGGTGAGACAAAGGGGAGTAACACAG...TCTATGTGCACTGAACAGATAAGAGATGAAAATAAAGAGCCTGTGCCTTACTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| 3UTR TCA 72 bp | AGAGCATATCTGAATGTCTTCCAGAAAGAAATGTCCTaGATCTCAAATCAGTGTCTCACTTTCCACCATAAA | + |
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Preference number: 3 (lower is better) Translates to: RAYLNVFQKEMS*ISNQCLTFHHK Trigger: TTTATGGTGGAAAGTGAGACACTGATTTGAGATTCAGGACATTTCTTTCTGGAAGACATTCAGATATGCTCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR CCA 90 bp | TCTCTTATCTGTTCAGTGCACATAGAAGGCACTGCCCCTGGGATAGAGGCAAGGGATTGTGGCGAGCTCTaGTCTCCATGCCACCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: SLICSVHIEGTAPGIEARDCGEL*SPCHLG Trigger: ACCCAGGTGGCATGGAGACCAGAGCTCGCCACAATC...CCTTGCCTCTATCCCAGGGGCAGTGCCTTCTATGTGCACTGAACAGATAAGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR TCA 90 bp | GCTCAAACTCTGTGTGCTATTCCAGCATGGCACAACCCCCAGGCATGTTTATCCGCTGCTCCTCCAGTATaGGTGGGTCCTTCCAGTCAA | + |
|
Preference number: 4 (lower is better) Translates to: AQTLCAIPAWHNPQACLSAAPPV*VGPSSQ Trigger: TTGACTGGAAGGACCCACTCATACTGGAGGAGCAGC...GGATAAACATGCCTGGGGGTTGTGCCATGCTGGAATAGCACACAGAGTTTGAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR TCA 90 bp | TCTCTTATCTGTTCAGTGCACATAGAAGGCACTGCCCCTGGGATAGAGGCAAGGGCTGCTCCTCCAGTATaGGTGGGTCCTTCCAGTCAA | + |
|
Preference number: 4 (lower is better) Translates to: SLICSVHIEGTAPGIEARAAPPV*VGPSSQ Trigger: TTGACTGGAAGGACCCACTCATACTGGAGGAGCAGC...CCTTGCCTCTATCCCAGGGGCAGTGCCTTCTATGTGCACTGAACAGATAAGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR TCA 90 bp | TCTCTTATCTGTTCAGTGCACATAGAAGGCACTGCCCCTGGGATAGAGGCAAGGTCTGCCAACTTCTTCTaGACCAGCTGGTTCCTGGCC | + |
|
Preference number: 4 (lower is better) Translates to: SLICSVHIEGTAPGIEARSANFF*TSWFLA Trigger: GGCCAGGAACCAGCTGGTTCAGAAGAAGTTGGCAGA...CCTTGCCTCTATCCCAGGGGCAGTGCCTTCTATGTGCACTGAACAGATAAGAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR GCA 90 bp | TCTTATCTGTTCAGTGCACATAGAAGGCACTGCCCCTGGGATAGAGGCAAGGTAGAGCTCTGGTCTCCATaGCACCTGGGTCACTCCCAT | + |
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Preference number: 4 (lower is better) Translates to: SYLFSAHRRHCPWDRGKVELWSP*HLGHSH Trigger: ATGGGAGTGACCCAGGTGGCATGGAGACCAGAGCTC...TACCTTGCCTCTATCCCAGGGGCAGTGCCTTCTATGTGCACTGAACAGATAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR GCA 90 bp | AAACTCTGTGTGCTATTCCAGCATGGCACAACCCCCAGGCATGTTTATCCCTCCCTGTCTAGGGCATACTaGCGGGCTGTGTGCAAACAG | + |
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Preference number: 4 (lower is better) Translates to: KLCVLFQHGTTPRHVYPSLSRAY*RAVCKQ Trigger: CTGTTTGCACACAGCCCGGCAGTATGCCCTAGACAG...GGAGGGATAAACATGCCTGGGGGTTGTGCCATGCTGGAATAGCACACAGAGTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR TCA 90 bp | AACTCTGTGTGCTATTCCAGCATGGCACAACCCCCAGGCATGTTTATCCCTCCTAGGTCTTGGTCCCACTaGGAGTGTAGCTCTGGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: NSVCYSSMAQPPGMFIPPRSWSH*ECSSGL Trigger: CAAACCAGAGCTACACTCTCAGTGGGACCAAGACCT...AGGAGGGATAAACATGCCTGGGGGTTGTGCCATGCTGGAATAGCACACAGAGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR TCA 90 bp | TCTCTTATCTGTTCAGTGCACATAGAAGGCACTGCCCCTGGGATAGAGGCAAGGGGGGTAGCCTTGTCCTaGTCCTTTAAACGGCCAAGT | + |
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Preference number: 4 (lower is better) Translates to: SLICSVHIEGTAPGIEARGVALS*SFKRPS Trigger: ACTTGGCCGTTTAAAGGATCAGGACAAGGCTACCCC...CCTTGCCTCTATCCCAGGGGCAGTGCCTTCTATGTGCACTGAACAGATAAGAGA 52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR TCA 90 bp | AACTCTGTGTGCTATTCCAGCATGGCACAACCCCCAGGCATGTTTATCCCTCCTTATAGATGGGGTGCATaGCAAGGGAGGACTGAACAC | + |
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Preference number: 4 (lower is better) Translates to: NSVCYSSMAQPPGMFIPPYRWGA*QGRTEH Trigger: GTGTTCAGTCCTCCCTTGTCATGCACCCCATCTATA...AGGAGGGATAAACATGCCTGGGGGTTGTGCCATGCTGGAATAGCACACAGAGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR TCA 90 bp | CTCAAACTCTGTGTGCTATTCCAGCATGGCACAACCCCCAGGCATGTTTATCCCTATAGATGGGGTGCATaGCAAGGGAGGACTGAACAC | + |
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Preference number: 4 (lower is better) Translates to: LKLCVLFQHGTTPRHVYPYRWGA*QGRTEH Trigger: GTGTTCAGTCCTCCCTTGTCATGCACCCCATCTATA...GGGATAAACATGCCTGGGGGTTGTGCCATGCTGGAATAGCACACAGAGTTTGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR TCA 90 bp | CTCAAACTCTGTGTGCTATTCCAGCATGGCACAACCCCCAGGCATGTTTATCCCAGTGTAGCTCTGGTTTaGTGGATTGTGGCGAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: LKLCVLFQHGTTPRHVYPSVALV*WIVASS Trigger: AGAGCTCGCCACAATCCATCAAACCAGAGCTACACT...GGGATAAACATGCCTGGGGGTTGTGCCATGCTGGAATAGCACACAGAGTTTGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR TCA 90 bp | CATAGAAGGCACTGCCCCTGGGATAGAGGCAAGGTAAACTGTAAAGTCCATTGCAGGTCTTGGTCCCACTaGGAGTGTAGCTCTGGTTTG | + |
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Preference number: 4 (lower is better) Translates to: HRRHCPWDRGKVNCKVHCRSWSH*ECSSGL Trigger: CAAACCAGAGCTACACTCTCAGTGGGACCAAGACCT...GCAATGGACTTTACAGTTTACCTTGCCTCTATCCCAGGGGCAGTGCCTTCTATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR CCA 90 bp | GGCTCTTTATTTTCATCTCTTATCTGTTCAGTGCACATAGAAGGCACTGCCCCTGGTCTCCATGCCACCTaGGTCACTCCCATGGTTGGG | + |
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Preference number: 4 (lower is better) Translates to: GSLFSSLICSVHIEGTAPGLHAT*VTPMVG Trigger: CCCAACCATGGGAGTGACCCAGGTGGCATGGAGACC...AGGGGCAGTGCCTTCTATGTGCACTGAACAGATAAGAGATGAAAATAAAGAGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR CCA 90 bp | TCTCTTATCTGTTCAGTGCACATAGAAGGCACTGCCCCTGGGATAGAGGCAAGGAAGGGGACTCCAAACTaGATCCTGTCTAGGGCATAC | + |
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Preference number: 4 (lower is better) Translates to: SLICSVHIEGTAPGIEARKGTPN*ILSRAY Trigger: GTATGCCCTAGACAGGATCCAGTTTGGAGTCCCCTT...CCTTGCCTCTATCCCAGGGGCAGTGCCTTCTATGTGCACTGAACAGATAAGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR CCA 90 bp | GGCTCTTTATTTTCATCTCTTATCTGTTCAGTGCACATAGAAGGCACTGCCCCTGATTGTGGCGAGCTCTaGTCTCCATGCCACCTGGGT | + |
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Preference number: 4 (lower is better) Translates to: GSLFSSLICSVHIEGTAPDCGEL*SPCHLG Trigger: ACCCAGGTGGCATGGAGACCAGAGCTCGCCACAATC...AGGGGCAGTGCCTTCTATGTGCACTGAACAGATAAGAGATGAAAATAAAGAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR CCA 90 bp | CATAGAAGGCACTGCCCCTGGGATAGAGGCAAGGTAAACTGTAAAGTCCATTGCTGGTTTGATGGATTGTaGCGAGCTCTGGTCTCCATG | + |
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Preference number: 4 (lower is better) Translates to: HRRHCPWDRGKVNCKVHCWFDGL*RALVSM Trigger: CATGGAGACCAGAGCTCGCCACAATCCATCAAACCA...GCAATGGACTTTACAGTTTACCTTGCCTCTATCCCAGGGGCAGTGCCTTCTATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR CCA 90 bp | GGCTCTTTATTTTCATCTCTTATCTGTTCAGTGCACATAGAAGGCACTGCCCCTAGGATGTCTCGTGCCTaGCGGGCAATATCCAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: GSLFSSLICSVHIEGTAPRMSRA*RAISRA Trigger: AGCCCTGGATATTGCCCGCCAGGCACGAGACATCCT...AGGGGCAGTGCCTTCTATGTGCACTGAACAGATAAGAGATGAAAATAAAGAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR TCA 90 bp | GCTCAAACTCTGTGTGCTATTCCAGCATGGCACAACCCCCAGGCATGTTTATCCCCAAGGATCAGAGCATaGATGTCATGTGTACCTTCA | + |
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Preference number: 4 (lower is better) Translates to: AQTLCAIPAWHNPQACLSPRIRA*MSCVPS Trigger: TGAAGGTACACATGACATTCATGCTCTGATCCTTGG...GGATAAACATGCCTGGGGGTTGTGCCATGCTGGAATAGCACACAGAGTTTGAGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR GCA 90 bp | CTCAAACTCTGTGTGCTATTCCAGCATGGCACAACCCCCAGGCATGTTTATCCCTTTAAACGGCCAAGTTaGAAACAAGCATGGAGTCCC | + |
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Preference number: 4 (lower is better) Translates to: LKLCVLFQHGTTPRHVYPFKRPS*KQAWSP Trigger: GGGACTCCATGCTTGTTTGCAACTTGGCCGTTTAAA...GGGATAAACATGCCTGGGGGTTGTGCCATGCTGGAATAGCACACAGAGTTTGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR CCA 90 bp | AGGCACAGGCTCTTTATTTTCATCTCTTATCTGTTCAGTGCACATAGAAGGCACAGGATGTCTCGTGCCTaGCGGGCAATATCCAGGGCT | + |
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Preference number: 4 (lower is better) Translates to: RHRLFIFISYLFSAHRRHRMSRA*RAISRA Trigger: AGCCCTGGATATTGCCCGCCAGGCACGAGACATCCT...GTGCCTTCTATGTGCACTGAACAGATAAGAGATGAAAATAAAGAGCCTGTGCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR CCA 90 bp | GAATGTCTTCCAGAAAGAAATGTCCTGAATCTCAAATCAGTGTCTCACTTTCCAGGTCTCCATGCCACCTaGGTCACTCCCATGGTTGGG | + |
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Preference number: 4 (lower is better) Translates to: ECLPERNVLNLKSVSHFPGLHAT*VTPMVG Trigger: CCCAACCATGGGAGTGACCCAGGTGGCATGGAGACC...TGGAAAGTGAGACACTGATTTGAGATTCAGGACATTTCTTTCTGGAAGACATTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR TCA 90 bp | GGCTCTTTATTTTCATCTCTTATCTGTTCAGTGCACATAGAAGGCACTGCCCCTATGACAAGGGAGGACTaGACACTCATCATCGACCTG | + |
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Preference number: 4 (lower is better) Translates to: GSLFSSLICSVHIEGTAPMTRED*TLIIDL Trigger: CAGGTCGATGATGAGTGTTCAGTCCTCCCTTGTCAT...AGGGGCAGTGCCTTCTATGTGCACTGAACAGATAAGAGATGAAAATAAAGAGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR CCA 90 bp | GGAGTAAGGCACAGGCTCTTTATTTTCATCTCTTATCTGTTCAGTGCACATAGAGAACCAGCTGGTTCCTaGCCAAGGGGACTCCAAACT | + |
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Preference number: 4 (lower is better) Translates to: GVRHRLFIFISYLFSAHREPAGS*PRGLQT Trigger: AGTTTGGAGTCCCCTTGGCCAGGAACCAGCTGGTTC...TCTATGTGCACTGAACAGATAAGAGATGAAAATAAAGAGCCTGTGCCTTACTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR GCA 90 bp | AGCATATCTGAATGTCTTCCAGAAAGAAATGTCCTGAATCTCAAATCAGTGTCTGAGCTCTGGTCTCCATaGCACCTGGGTCACTCCCAT | + |
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Preference number: 4 (lower is better) Translates to: SISECLPERNVLNLKSVSELWSP*HLGHSH Trigger: ATGGGAGTGACCCAGGTGGCATGGAGACCAGAGCTC...AGACACTGATTTGAGATTCAGGACATTTCTTTCTGGAAGACATTCAGATATGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR GCA 90 bp | CAGTGTCTCACTTTCCACCATAAAAGTTGTGTCCATACATTTCTTCTTGAGCAGTACTGCCGGGCTGTGTaGAAACAGAACTCAGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: QCLTFHHKSCVHTFLLEQYCRAV*KQNSAA Trigger: AGCTGCTGAGTTCTGTTTGCACACAGCCCGGCAGTA...CTGCTCAAGAAGAAATGTATGGACACAACTTTTATGGTGGAAAGTGAGACACTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR TCA 90 bp | GAATGTCTTCCAGAAAGAAATGTCCTGAATCTCAAATCAGTGTCTCACTTTCCATACGGAAGGTGTCCCTaGTCAGTTTCTCATCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: ECLPERNVLNLKSVSHFPYGRCP*SVSHRQ Trigger: CTGCCGATGAGAAACTGATCAGGGACACCTTCCGTA...TGGAAAGTGAGACACTGATTTGAGATTCAGGACATTTCTTTCTGGAAGACATTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR CCA 90 bp | CAGTGTCTCACTTTCCACCATAAAAGTTGTGTCCATACATTTCTTCTTGAGCAGAAGGGGACTCCAAACTaGATCCTGTCTAGGGCATAC | + |
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Preference number: 4 (lower is better) Translates to: QCLTFHHKSCVHTFLLEQKGTPN*ILSRAY Trigger: GTATGCCCTAGACAGGATCCAGTTTGGAGTCCCCTT...CTGCTCAAGAAGAAATGTATGGACACAACTTTTATGGTGGAAAGTGAGACACTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR TCA 90 bp | TCAAATCAGTGTCTCACTTTCCACCATAAAAGTTGTGTCCATACATTTCTTCTTTCTGCCAACTTCTTCTaGACCAGCTGGTTCCTGGCC | + |
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Preference number: 4 (lower is better) Translates to: SNQCLTFHHKSCVHTFLLSANFF*TSWFLA Trigger: GGCCAGGAACCAGCTGGTTCAGAAGAAGTTGGCAGA...AAGAAGAAATGTATGGACACAACTTTTATGGTGGAAAGTGAGACACTGATTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR TCA 90 bp | AGGCACAGGCTCTTTATTTTCATCTCTTATCTGTTCAGTGCACATAGAAGGCACCCAAGGATCAGAGCATaGATGTCATGTGTACCTTCA | + |
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Preference number: 4 (lower is better) Translates to: RHRLFIFISYLFSAHRRHPRIRA*MSCVPS Trigger: TGAAGGTACACATGACATTCATGCTCTGATCCTTGG...GTGCCTTCTATGTGCACTGAACAGATAAGAGATGAAAATAAAGAGCCTGTGCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR GCA 90 bp | TCAAATCAGTGTCTCACTTTCCACCATAAAAGTTGTGTCCATACATTTCTTCTTCTGTCTAGGGCATACTaGCGGGCTGTGTGCAAACAG | + |
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Preference number: 4 (lower is better) Translates to: SNQCLTFHHKSCVHTFLLLSRAY*RAVCKQ Trigger: CTGTTTGCACACAGCCCGGCAGTATGCCCTAGACAG...AAGAAGAAATGTATGGACACAACTTTTATGGTGGAAAGTGAGACACTGATTTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR TCA 90 bp | TCAAATCAGTGTCTCACTTTCCACCATAAAAGTTGTGTCCATACATTTCTTCTTTACGGAAGGTGTCCCTaGTCAGTTTCTCATCGGCAG | + |
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Preference number: 4 (lower is better) Translates to: SNQCLTFHHKSCVHTFLLYGRCP*SVSHRQ Trigger: CTGCCGATGAGAAACTGATCAGGGACACCTTCCGTA...AAGAAGAAATGTATGGACACAACTTTTATGGTGGAAAGTGAGACACTGATTTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR TCA 90 bp | AGCATATCTGAATGTCTTCCAGAAAGAAATGTCCTGAATCTCAAATCAGTGTCTAGTGTAGCTCTGGTTTaGTGGATTGTGGCGAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: SISECLPERNVLNLKSVSSVALV*WIVASS Trigger: AGAGCTCGCCACAATCCATCAAACCAGAGCTACACT...AGACACTGATTTGAGATTCAGGACATTTCTTTCTGGAAGACATTCAGATATGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR GCA 90 bp | GAATGTCTTCCAGAAAGAAATGTCCTGAATCTCAAATCAGTGTCTCACTTTCCATTTAAACGGCCAAGTTaGAAACAAGCATGGAGTCCC | + |
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Preference number: 4 (lower is better) Translates to: ECLPERNVLNLKSVSHFPFKRPS*KQAWSP Trigger: GGGACTCCATGCTTGTTTGCAACTTGGCCGTTTAAA...TGGAAAGTGAGACACTGATTTGAGATTCAGGACATTTCTTTCTGGAAGACATTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR CCA 90 bp | AGCATATCTGAATGTCTTCCAGAAAGAAATGTCCTGAATCTCAAATCAGTGTCTGCATGCCGGATGACATaGTACTCATCAGAAATCCCA | + |
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Preference number: 4 (lower is better) Translates to: SISECLPERNVLNLKSVSACRMT*YSSEIP Trigger: TGGGATTTCTGATGAGTACCATGTCATCCGGCATGC...AGACACTGATTTGAGATTCAGGACATTTCTTTCTGGAAGACATTCAGATATGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR GCA 90 bp | TCACTTTCCACCATAAAAGTTGTGTCCATACATTTCTTCTTGAGCAGACTCAGGTTCATAAGTGTTCACTaGCTCCAGATTCATAGCATG | + |
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Preference number: 4 (lower is better) Translates to: SLSTIKVVSIHFFLSRLRFISVH*LQIHSM Trigger: CATGCTATGAATCTGGAGGCAGTGAACACTTATGAA...CCTGAGTCTGCTCAAGAAGAAATGTATGGACACAACTTTTATGGTGGAAAGTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR GCA 90 bp | GGAGTAAGGCACAGGCTCTTTATTTTCATCTCTTATCTGTTCAGTGCACATAGATTCATAAGTGTTCACTaGCTCCAGATTCATAGCATG | + |
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Preference number: 4 (lower is better) Translates to: GVRHRLFIFISYLFSAHRFISVH*LQIHSM Trigger: CATGCTATGAATCTGGAGGCAGTGAACACTTATGAA...TCTATGTGCACTGAACAGATAAGAGATGAAAATAAAGAGCCTGTGCCTTACTCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| 3UTR CAA 72 bp | CTTTCCACCATAAAAGTTGTGTCCATACATTTCTTCTaGAGCAGACTCAGGGCAAAGTATTTCTCTGTTGAA | + |
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Preference number: 4 (lower is better) Translates to: LSTIKVVSIHFF*SRLRAKYFSVE Trigger: TTCAACAGAGAAATACTTTGCCCTGAGTCTGCTCAAGAAGAAATGTATGGACACAACTTTTATGGTGGAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS CCA 90 bp | GATCTGTGTCTTCTCGGTGTGGGCGGCCGCCGAGCTCCAGGTACGTaGAAAACGCGGGAAGCGCAGGCCGGACCTGCGGCTCAGCAACCG | + |
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Preference number: 5 (lower is better) Translates to: DLCLLGVGGRRAPGT*KTREAQAGPAAQQP Trigger: CGGTTGCTGAGCCGCAGGTCCGGCCTGCGCTTCCCGCGTTTTCCACGTACCTGGAGCTCGGCGGCCGCCCACACCGAGAAGACACAGATC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 ENSMUST00000142748.2 |
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| CDS CCA 90 bp | ACGGGGCGAGAGGATTTGGCCGGTCGGATCTGTGTCTTCTCGGTGTaGGCGGCCGCCGAGCTCCAGGTACGTGGAAAACGCGGGAAGCGC | + |
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Preference number: 5 (lower is better) Translates to: TGREDLAGRICVFSV*AAAELQVRGKRGKR Trigger: GCGCTTCCCGCGTTTTCCACGTACCTGGAGCTCGGCGGCCGCCCACACCGAGAAGACACAGATCCGACCGGCCAAATCCTCTCGCCCCGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 ENSMUST00000142748.2 |
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| CDS CCA 90 bp | CCTGATCAGTTTCTCATCGGCAGTCAGCTGCTCCTCCAGTATGAGTaGGTCCTTCCAGTCAAACACGGGGCGAGAGGATTTGGCCGGTCG | + |
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Preference number: 5 (lower is better) Translates to: PDQFLIGSQLLLQYE*VLPVKHGARGFGRS Trigger: CGACCGGCCAAATCCTCTCGCCCCGTGTTTGACTGGAAGGACCCACTCATACTGGAGGAGCAGCTGACTGCCGATGAGAAACTGATCAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS TCA 90 bp | GTTGGTGATCCAGGTCTTGGTCCCACTGAGAGTGTAGCTCTGGTTTaGTGGATTGTGGCGAGCTCTGGTCTCCATGCCACCTGGGTCACT | + |
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Preference number: 5 (lower is better) Translates to: VGDPGLGPTESVALV*WIVASSGLHATWVT Trigger: AGTGACCCAGGTGGCATGGAGACCAGAGCTCGCCACAATCCATCAAACCAGAGCTACACTCTCAGTGGGACCAAGACCTGGATCACCAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR CAA 90 bp | TCTCTTATCTGTTCAGTGCACATAGAAGGCACTGCCCCTGGGATAGAGGCAAGGGGGTCACTCCCATGGTaGGGCTCTGTAAGTCCAAAG | + |
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Preference number: 5 (lower is better) Translates to: SLICSVHIEGTAPGIEARGSLPW*GSVSPK Trigger: CTTTGGACTTACAGAGCCCAACCATGGGAGTGACCC...CCTTGCCTCTATCCCAGGGGCAGTGCCTTCTATGTGCACTGAACAGATAAGAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS GCA 90 bp | GACATGGTACTCATCAGAAATCCCATTTCCTCCCAGGATGTCTCGTaGCTGGCGGGCAATATCCAGGGCTTTTCCACAGTTGTTTCTCTT | + |
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Preference number: 5 (lower is better) Translates to: DMVLIRNPISSQDVS*LAGNIQGFSTVVSL Trigger: AAGAGAAACAACTGTGGAAAAGCCCTGGATATTGCCCGCCAGGCACGAGACATCCTGGGAGGAAATGGGATTTCTGATGAGTACCATGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS CCA 90 bp | TGGTACTCATCAGAAATCCCATTTCCTCCCAGGATGTCTCGTGCCTaGCGGGCAATATCCAGGGCTTTTCCACAGTTGTTTCTCTTCAAC | + |
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Preference number: 5 (lower is better) Translates to: WYSSEIPFPPRMSRA*RAISRAFPQLFLFN Trigger: GTTGAAGAGAAACAACTGTGGAAAAGCCCTGGATATTGCCCGCCAGGCACGAGACATCCTGGGAGGAAATGGGATTTCTGATGAGTACCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR CAA 90 bp | GGCTCTTTATTTTCATCTCTTATCTGTTCAGTGCACATAGAAGGCACTGCCCCTGGGTCACTCCCATGGTaGGGCTCTGTAAGTCCAAAG | + |
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Preference number: 5 (lower is better) Translates to: GSLFSSLICSVHIEGTAPGSLPW*GSVSPK Trigger: CTTTGGACTTACAGAGCCCAACCATGGGAGTGACCC...AGGGGCAGTGCCTTCTATGTGCACTGAACAGATAAGAGATGAAAATAAAGAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR CAA 90 bp | AACTCTGTGTGCTATTCCAGCATGGCACAACCCCCAGGCATGTTTATCCCTCCTAGGGCTTTTCCACAGTaGTTTCTCTTCAACATGGAG | + |
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Preference number: 5 (lower is better) Translates to: NSVCYSSMAQPPGMFIPPRAFPQ*FLFNME Trigger: CTCCATGTTGAAGAGAAACAACTGTGGAAAAGCCCT...AGGAGGGATAAACATGCCTGGGGGTTGTGCCATGCTGGAATAGCACACAGAGTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS TCA 90 bp | TTGTTTCTCTTCAACATGGAGACCATCTCTGGGGTAGCCTTGTCCTaGTCCTTTAAACGGCCAAGTTGCAAACAAGCATGGAGTCCCAGT | + |
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Preference number: 5 (lower is better) Translates to: LFLFNMETISGVALS*SFKRPSCKQAWSPS Trigger: ACTGGGACTCCATGCTTGTTTGCAACTTGGCCGTTTAAAGGATCAGGACAAGGCTACCCCAGAGATGGTCTCCATGTTGAAGAGAAACAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS-3UTR CAA 90 bp | GGCTCTTTATTTTCATCTCTTATCTGTTCAGTGCACATAGAAGGCACTGCCCCTAGGGCTTTTCCACAGTaGTTTCTCTTCAACATGGAG | + |
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Preference number: 5 (lower is better) Translates to: GSLFSSLICSVHIEGTAPRAFPQ*FLFNME Trigger: CTCCATGTTGAAGAGAAACAACTGTGGAAAAGCCCT...AGGGGCAGTGCCTTCTATGTGCACTGAACAGATAAGAGATGAAAATAAAGAGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS CCA 72 bp | CTTCTCGGTGTGGGCGGCCGCCGAGCTCCAGGTACGTaGAAAACGCGGGAAGCGCAGGCCGGACCTGCGGCT | + |
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Preference number: 6 (lower is better) Translates to: LLGVGGRRAPGT*KTREAQAGPAA Trigger: AGCCGCAGGTCCGGCCTGCGCTTCCCGCGTTTTCCACGTACCTGGAGCTCGGCGGCCGCCCACACCGAGAAG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 ENSMUST00000142748.2 |
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| CDS CCA 72 bp | GAGGATTTGGCCGGTCGGATCTGTGTCTTCTCGGTGTaGGCGGCCGCCGAGCTCCAGGTACGTGGAAAACGC | + |
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Preference number: 6 (lower is better) Translates to: EDLAGRICVFSV*AAAELQVRGKR Trigger: GCGTTTTCCACGTACCTGGAGCTCGGCGGCCGCCCACACCGAGAAGACACAGATCCGACCGGCCAAATCCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 ENSMUST00000142748.2 |
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| CDS CAA 90 bp | TTGTGGCGAGCTCTGGTCTCCATGCCACCTGGGTCACTCCCATGGTaGGGCTCTGTAAGTCCAAAGCAGCCCAGAAGTTCACCCTTGGCC | + |
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Preference number: 6 (lower is better) Translates to: LWRALVSMPPGSLPW*GSVSPKQPRSSPLA Trigger: GGCCAAGGGTGAACTTCTGGGCTGCTTTGGACTTACAGAGCCCAACCATGGGAGTGACCCAGGTGGCATGGAGACCAGAGCTCGCCACAA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS TCA 72 bp | TCAGTTTCTCATCGGCAGTCAGCTGCTCCTCCAGTATaGGTGGGTCCTTCCAGTCAAACACGGGGCGAGAGG | + |
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Preference number: 6 (lower is better) Translates to: SVSHRQSAAPPV*VGPSSQTRGER Trigger: CCTCTCGCCCCGTGTTTGACTGGAAGGACCCACTCATACTGGAGGAGCAGCTGACTGCCGATGAGAAACTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS TCA 72 bp | CCAGGTCTTGGTCCCACTGAGAGTGTAGCTCTGGTTTaGTGGATTGTGGCGAGCTCTGGTCTCCATGCCACC | + |
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Preference number: 6 (lower is better) Translates to: PGLGPTESVALV*WIVASSGLHAT Trigger: GGTGGCATGGAGACCAGAGCTCGCCACAATCCATCAAACCAGAGCTACACTCTCAGTGGGACCAAGACCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS CAA 72 bp | GCTCTGGTCTCCATGCCACCTGGGTCACTCCCATGGTaGGGCTCTGTAAGTCCAAAGCAGCCCAGAAGTTCA | + |
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Preference number: 6 (lower is better) Translates to: ALVSMPPGSLPW*GSVSPKQPRSS Trigger: TGAACTTCTGGGCTGCTTTGGACTTACAGAGCCCAACCATGGGAGTGACCCAGGTGGCATGGAGACCAGAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS CAA 72 bp | GGCTCTGTAAGTCCAAAGCAGCCCAGAAGTTCACCCTaGGCCAGTCCGGGCAGATATTTCTGTCGCTGTTCC | + |
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Preference number: 6 (lower is better) Translates to: GSVSPKQPRSSP*ASPGRYFCRCS Trigger: GGAACAGCGACAGAAATATCTGCCCGGACTGGCCAAGGGTGAACTTCTGGGCTGCTTTGGACTTACAGAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS CAA 90 bp | AGGATGTCTCGTGCCTGGCGGGCAATATCCAGGGCTTTTCCACAGTaGTTTCTCTTCAACATGGAGACCATCTCTGGGGTAGCCTTGTCC | + |
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Preference number: 6 (lower is better) Translates to: RMSRAWRAISRAFPQ*FLFNMETISGVALS Trigger: GGACAAGGCTACCCCAGAGATGGTCTCCATGTTGAAGAGAAACAACTGTGGAAAAGCCCTGGATATTGCCCGCCAGGCACGAGACATCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS TCA 72 bp | GCTGTTCCTCGCTCCCATAGGTATAGATGGGGTGCATaGCAAGGGAGGACTGAACACTCATCATCGACCTGT | + |
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Preference number: 6 (lower is better) Translates to: AVPRSHRYRWGA*QGRTEHSSSTC Trigger: ACAGGTCGATGATGAGTGTTCAGTCCTCCCTTGTCATGCACCCCATCTATACCTATGGGAGCGAGGAACAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS GCA 72 bp | AAGGTGTCCCTGATCAGTTTCTCATCGGCAGTCAGCTaGTCCTCCAGTATGAGTGGGTCCTTCCAGTCAAAC | + |
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Preference number: 6 (lower is better) Translates to: KVSLISFSSAVS*SSSMSGSFQSN Trigger: GTTTGACTGGAAGGACCCACTCATACTGGAGGAGCAGCTGACTGCCGATGAGAAACTGATCAGGGACACCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS GCA 72 bp | CTCATCAGAAATCCCATTTCCTCCCAGGATGTCTCGTaGCTGGCGGGCAATATCCAGGGCTTTTCCACAGTT | + |
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Preference number: 6 (lower is better) Translates to: LIRNPISSQDVS*LAGNIQGFSTV Trigger: AACTGTGGAAAAGCCCTGGATATTGCCCGCCAGGCACGAGACATCCTGGGAGGAAATGGGATTTCTGATGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS CCA 72 bp | TCAGAAATCCCATTTCCTCCCAGGATGTCTCGTGCCTaGCGGGCAATATCCAGGGCTTTTCCACAGTTGTTT | + |
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Preference number: 6 (lower is better) Translates to: SEIPFPPRMSRA*RAISRAFPQLF Trigger: AAACAACTGTGGAAAAGCCCTGGATATTGCCCGCCAGGCACGAGACATCCTGGGAGGAAATGGGATTTCTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS TCA 72 bp | TTCAACATGGAGACCATCTCTGGGGTAGCCTTGTCCTaGTCCTTTAAACGGCCAAGTTGCAAACAAGCATGG | + |
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Preference number: 6 (lower is better) Translates to: FNMETISGVALS*SFKRPSCKQAW Trigger: CCATGCTTGTTTGCAACTTGGCCGTTTAAAGGATCAGGACAAGGCTACCCCAGAGATGGTCTCCATGTTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS CCA 72 bp | TTCACTGCCTCCAGATTCATAGCATGCCGGATGACATaGTACTCATCAGAAATCCCATTTCCTCCCAGGATG | + |
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Preference number: 6 (lower is better) Translates to: FTASRFIACRMT*YSSEIPFPPRM Trigger: CATCCTGGGAGGAAATGGGATTTCTGATGAGTACCATGTCATCCGGCATGCTATGAATCTGGAGGCAGTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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| CDS GCA 72 bp | AGCATGAATGTCATGTGTACCTTCATAAGTGTTCACTaGCTCCAGATTCATAGCATGCCGGATGACATGGTA | + |
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Preference number: 6 (lower is better) Translates to: SMNVMCTFISVH*LQIHSMPDDMV Trigger: TACCATGTCATCCGGCATGCTATGAATCTGGAGGCAGTGAACACTTATGAAGGTACACATGACATTCATGCT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003907.14 ENSMUST00000109745.8 |
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