Pregenerated sensors for GC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035540Ensembl transcript IDs: ENSMUST00000049209.13, ENSMUST00000200534.2
Found 92 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGAATTATCTTGGTGATCTTCTTGGAAGGCCATCTCTGTGGTGCTTaGTTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAG | + |
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Preference number: 1 (lower is better) Translates to: GIILVIFLEGHLCGA*FCYQWQFSRVVQFK Trigger: CTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCAAGAAGATCACCAAGATAATTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| 3UTR GCA 90 bp | AAATGGAATTATCTTGGTGATCTTCTTGGAAGGCCATCTCTGTGGTaGTTGATTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTT | + |
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Preference number: 1 (lower is better) Translates to: KWNYLGDLLGRPSLW*LILLPVAIFQSGSV Trigger: AACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCAAGAAGATCACCAAGATAATTCCATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| 3UTR CAA 90 bp | TGGAATTATCTTGGTGATCTTCTTGGAAGGCCATCTCTGTGGTGCTaGATTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAA | + |
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Preference number: 2 (lower is better) Translates to: WNYLGDLLGRPSLWC*ILLPVAIFQSGSVQ Trigger: TTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCAAGAAGATCACCAAGATAATTCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| 3UTR TCA 72 bp | TTGGTGATCTTCTTGGAAGGCCATCTCTGTGGTGCTTaGTTTTGTTACCAGTGGCAATTTTCCAGAGTGGTT | + |
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Preference number: 3 (lower is better) Translates to: LVIFLEGHLCGA*FCYQWQFSRVV Trigger: AACCACTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCAAGAAGATCACCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR GCA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGCCAGCCCCTCCTTGGTaGAACACTCAGGAGTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: WKAISVVLDFVTSGNFPEPAPPW*NTQEFQ Trigger: CTGGAACTCCTGAGTGTTGCACCAAGGAGGGGCTGG...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR TCA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTCCTGCGGCTGGTGACTaGGGGCAGCCATGCAGAGTT | + |
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Preference number: 4 (lower is better) Translates to: FCYQWQFSRVVQFKIQASPAAGD*GQPCRV Trigger: AACTCTGCATGGCTGCCCTCAGTCACCAGCCGCAGG...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR TCA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGGGGGACTCTGAGTGCTaGAACAGGCAACAGAATCCT | + |
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Preference number: 4 (lower is better) Translates to: WKAISVVLDFVTSGNFPEGDSEC*NRQQNP Trigger: AGGATTCTGTTGCCTGTTTCAGCACTCAGAGTCCCC...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CCA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGCTGCCGGAGAGGTGTTaGGTGTTTTTGTCCTTAGCC | + |
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Preference number: 4 (lower is better) Translates to: WKAISVVLDFVTSGNFPELPERC*VFLSLA Trigger: GGCTAAGGACAAAAACACCCAACACCTCTCCGGCAG...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR TCA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGCCTTCACAAGCTGGTTaGCCTGCTCAAATGTGCTAC | + |
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Preference number: 4 (lower is better) Translates to: WKAISVVLDFVTSGNFPEPSQAG*PAQMCY Trigger: GTAGCACATTTGAGCAGGTCAACCAGCTTGTGAAGG...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR TCA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGTTCTGCATCAATCTGTaGGCTGCAGTAGAGAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: WKAISVVLDFVTSGNFPEFCINL*AAVERR Trigger: CCTCCTCTCTACTGCAGCTCACAGATTGATGCAGAA...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CCA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTACAGCTCTGAGGTCCTaGTGTCGTAGCAGGTGGGGT | + |
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Preference number: 4 (lower is better) Translates to: FCYQWQFSRVVQFKIQASTALRS*CRSRWG Trigger: ACCCCACCTGCTACGACACCAGGACCTCAGAGCTGT...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CCA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTGCTCCAGCCCCTCCTTaGTGCAACACTCAGGAGTTC | + |
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Preference number: 4 (lower is better) Translates to: FCYQWQFSRVVQFKIQASAPAPP*CNTQEF Trigger: GAACTCCTGAGTGTTGCACCAAGGAGGGGCTGGAGC...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CCA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTGCTCAGGCAGCTCACTaGCCATGCAATCCTCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: FCYQWQFSRVVQFKIQASAQAAH*PCNPLR Trigger: CCTCAGAGGATTGCATGGCCAGTGAGCTGCCTGAGC...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR TCA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTTCAGGAGTTCCAGGGTaGACCGGAAAGGGAGCATCA | + |
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Preference number: 4 (lower is better) Translates to: FCYQWQFSRVVQFKIQASSGVPG*TGKGAS Trigger: TGATGCTCCCTTTCCGGTTCACCCTGGAACTCCTGA...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR TCA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGCATGGTGGTGAGAAGTaGCAAATGCTTCATCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: WKAISVVLDFVTSGNFPEHGGEK*QMLHLE Trigger: CTCCAGATGAAGCATTTGTCACTTCTCACCACCATG...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR GCA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGGCATACAGTTGGGTTTaGAGAAGTACAGCAGGATCC | + |
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Preference number: 4 (lower is better) Translates to: WKAISVVLDFVTSGNFPEAYSWV*RSTAGS Trigger: GGATCCTGCTGTACTTCTGCAAACCCAACTGTATGC...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR GCA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGCAGATTTTTATTGTGTaGTCAGGCAGCTCACTGGCC | + |
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Preference number: 4 (lower is better) Translates to: WKAISVVLDFVTSGNFPEQIFIV*SGSSLA Trigger: GGCCAGTGAGCTGCCTGAGCACACAATAAAAATCTG...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CCA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGCCTCTTTCCCCAGCATaGCGAGTTCATTGCAAACTT | + |
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Preference number: 4 (lower is better) Translates to: WKAISVVLDFVTSGNFPEPLSPA*RVHCKL Trigger: AAGTTTGCAATGAACTCGCCATGCTGGGGAAAGAGG...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CCA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGAGCTGGCAATTGAAGTaGTTCAGCAGCTGGCATGAA | + |
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Preference number: 4 (lower is better) Translates to: WKAISVVLDFVTSGNFPESWQLK*FSSWHE Trigger: TTCATGCCAGCTGCTGAACCACTTCAATTGCCAGCT...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CCA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGGCTGAGGAACACTTCTaGAACTTGAGTCCTTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: WKAISVVLDFVTSGNFPEAEEHF*NLSPSA Trigger: AGCAGAAGGACTCAAGTTCCAGAAGTGTTCCTCAGC...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR TCA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGGAGATGGCTCAGCCTTaGTTTTTCCTTTCCATATGC | + |
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Preference number: 4 (lower is better) Translates to: WKAISVVLDFVTSGNFPEEMAQP*FFLSIC Trigger: GCATATGGAAAGGAAAAATCAAGGCTGAGCCATCTC...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR TCA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTCAGGCAACAGAATCCTaGGTGTCACAGCACTCCCTA | + |
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Preference number: 4 (lower is better) Translates to: FCYQWQFSRVVQFKIQASQATES*VSQHSL Trigger: TAGGGAGTGCTGTGACACTCAGGATTCTGTTGCCTG...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR GCA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTCATGTCTTTCAGCTCTaGCGGAGAGGTGTTGGGTGT | + |
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Preference number: 4 (lower is better) Translates to: FCYQWQFSRVVQFKIQASHVFQL*RRGVGC Trigger: ACACCCAACACCTCTCCGGCAGAGCTGAAAGACATG...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CCA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTTTGGTTCCACGTAGGTaGGAAATTCCTGCGGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: FCYQWQFSRVVQFKIQASLVPRR*EIPAAG Trigger: ACCAGCCGCAGGAATTTCCCACCTACGTGGAACCAA...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CCA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTGGTCCATGGCTTGTGTaGTACTCTGACCACAGAGGT | + |
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Preference number: 4 (lower is better) Translates to: FCYQWQFSRVVQFKIQASGPWLV*YSDHRG Trigger: ACCTCTGTGGTCAGAGTACCACACAAGCCATGGACC...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| 3UTR CAA 72 bp | CTTGGTGATCTTCTTGGAAGGCCATCTCTGTGGTGCTaGATTTTGTTACCAGTGGCAATTTTCCAGAGTGGT | + |
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Preference number: 4 (lower is better) Translates to: LGDLLGRPSLWC*ILLPVAIFQSG Trigger: ACCACTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCAAGAAGATCACCAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR TCA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGTGTTTGACATGGTGGTaGGAAGTGACAAATGCTTCA | + |
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Preference number: 4 (lower is better) Translates to: WKAISVVLDFVTSGNFPECLTWW*EVTNAS Trigger: TGAAGCATTTGTCACTTCTCACCACCATGTCAAACA...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR TCA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGTTTGGGCTAGTTTTATaGGATGGCTCAGCCTTGATT | + |
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Preference number: 4 (lower is better) Translates to: WKAISVVLDFVTSGNFPEFGLVL*DGSALI Trigger: AATCAAGGCTGAGCCATCTCATAAAACTAGCCCAAA...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR TCA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTGGCCATGCAATCCTCTaGGGTAGACTCACAACATCT | + |
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Preference number: 4 (lower is better) Translates to: FCYQWQFSRVVQFKIQASGHAIL*GRLTTS Trigger: AGATGTTGTGAGTCTACCTCAGAGGATTGCATGGCC...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CCA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGGATCTCATCATTTGTTaGTTCCACGTAGGTGGGAAA | + |
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Preference number: 4 (lower is better) Translates to: WKAISVVLDFVTSGNFPEDLIIC*FHVGGK Trigger: TTTCCCACCTACGTGGAACCAACAAATGATGAGATC...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CCA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGTACTCATACAGAAACTaGTCAGCAAATCCCTTTGGG | + |
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Preference number: 4 (lower is better) Translates to: WKAISVVLDFVTSGNFPEYSYRN*SANPFG Trigger: CCCAAAGGGATTTGCTGACCAGTTTCTGTATGAGTA...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CCA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGGCAGTTGGCACTTTTTaGGCTAGTTTTATGAGATGG | + |
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Preference number: 4 (lower is better) Translates to: WKAISVVLDFVTSGNFPEAVGTF*ASFMRW Trigger: CCATCTCATAAAACTAGCCCAAAAAGTGCCAACTGC...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| 3UTR CAA 72 bp | GATCTTCTTGGAAGGCCATCTCTGTGGTGCTTGATTTaGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTT | + |
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Preference number: 4 (lower is better) Translates to: DLLGRPSLWCLI*LPVAIFQSGSV Trigger: AACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCAAGAAGATC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR TCA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTGCTCCAGAACTTTGCTaGGGAACACTTCTGGAACTT | + |
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Preference number: 4 (lower is better) Translates to: FCYQWQFSRVVQFKIQASAPELC*GTLLEL Trigger: AAGTTCCAGAAGTGTTCCTCAGCAAAGTTCTGGAGC...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR TCA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTGCAGTAGAGAGGAGGTaGGTTTATAGAGCAGCACTT | + |
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Preference number: 4 (lower is better) Translates to: FCYQWQFSRVVQFKIQASAVERR*VYRAAL Trigger: AAGTGCTGCTCTATAAACTCACCTCCTCTCTACTGC...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR GCA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGGCATGGCGAGTTCATTaGAAACTTTATCCTTCTCAT | + |
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Preference number: 4 (lower is better) Translates to: WKAISVVLDFVTSGNFPEAWRVH*KLYPSH Trigger: ATGAGAAGGATAAAGTTTGCAATGAACTCGCCATGC...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR GCA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGGCGCTTGTCCATAATTaGTGGAATACTCATACAGAA | + |
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Preference number: 4 (lower is better) Translates to: WKAISVVLDFVTSGNFPEALVHN*WNTHTE Trigger: TTCTGTATGAGTATTCCAGCAATTATGGACAAGCGC...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR GCA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTCATCAATCTGTGAGCTaGAGTAGAGAGGAGGTGAGT | + |
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Preference number: 4 (lower is better) Translates to: FCYQWQFSRVVQFKIQASHQSVS*SREEVS Trigger: ACTCACCTCCTCTCTACTGCAGCTCACAGATTGATG...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CCA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGGCTAGTTTTATGAGATaGCTCAGCCTTGATTTTTCC | + |
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Preference number: 4 (lower is better) Translates to: WKAISVVLDFVTSGNFPEASFMR*LSLDFS Trigger: GGAAAAATCAAGGCTGAGCCATCTCATAAAACTAGC...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CCA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTAAGGGTTTTCAGGGTTaGCTCCAGAACTTTGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: FCYQWQFSRVVQFKIQASKGFQG*LQNFAE Trigger: CTCAGCAAAGTTCTGGAGCCAACCCTGAAAACCCTT...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR TCA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGTCTGCACACATTTCTTaGCCTTTTTCGATGAAAGAA | + |
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Preference number: 4 (lower is better) Translates to: WKAISVVLDFVTSGNFPESAHIS*PFSMKE Trigger: TTCTTTCATCGAAAAAGGTCAAGAAATGTGTGCAGA...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR GCA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTGTGAGAAGTGACAAATaGTTCATCTGGAGTCTCTCC | + |
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Preference number: 4 (lower is better) Translates to: FCYQWQFSRVVQFKIQASVRSDK*FIWSLS Trigger: GGAGAGACTCCAGATGAAGCATTTGTCACTTCTCAC...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR GCA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTATGAAAGAAGTTAGTTaGCTCTTCAGCAGGGGACTC | + |
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Preference number: 4 (lower is better) Translates to: FCYQWQFSRVVQFKIQASMKEVS*LFSRGL Trigger: GAGTCCCCTGCTGAAGAGGCAACTAACTTCTTTCAT...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CCA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTACTTCCTTCACAAGCTaGTTGACCTGCTCAAATGTG | + |
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Preference number: 4 (lower is better) Translates to: FCYQWQFSRVVQFKIQASTSFTS*LTCSNV Trigger: CACATTTGAGCAGGTCAACCAGCTTGTGAAGGAAGT...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR TCA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTTTAGTGATAAAGATCTaGAGTCCTCTTTCCCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: FCYQWQFSRVVQFKIQASLVIKI*SPLSPA Trigger: TGCTGGGGAAAGAGGACTTCAGATCTTTATCACTAA...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CCA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTGACAAATGCTTCATCTaGAGTCTCTCCTTCACAAAG | + |
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Preference number: 4 (lower is better) Translates to: FCYQWQFSRVVQFKIQASDKCFI*SLSFTK Trigger: CTTTGTGAAGGAGAGACTCCAGATGAAGCATTTGTC...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR GCA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTGAACTTGAGTCCTTCTaGTTAGTTCAAATGTATACT | + |
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Preference number: 4 (lower is better) Translates to: FCYQWQFSRVVQFKIQASELESF*LVQMYT Trigger: AGTATACATTTGAACTAAGCAGAAGGACTCAAGTTC...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CCA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTCTTGTCCATAATTGCTaGAATACTCATACAGAAACT | + |
|
Preference number: 4 (lower is better) Translates to: FCYQWQFSRVVQFKIQASLVHNC*NTHTET Trigger: AGTTTCTGTATGAGTATTCCAGCAATTATGGACAAG...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS TCA 90 bp | CATTTGTTGGTTCCACGTAGGTGGGAAATTCCTGCGGCTGGTGACTaGGGGCAGCCATGCAGAGTTTCCGCTCCAGCCCCTCCTTGGTGC | + |
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Preference number: 5 (lower is better) Translates to: HLLVPRRWEIPAAGD*GQPCRVSAPAPPWC Trigger: GCACCAAGGAGGGGCTGGAGCGGAAACTCTGCATGGCTGCCCTCAGTCACCAGCCGCAGGAATTTCCCACCTACGTGGAACCAACAAATG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS TCA 90 bp | AACCGGAAAGGGAGCATCACTTTCACAGGACTTAACAGACAGCTCTaGGGTCCTGGTGTCGTAGCAGGTGGGGTCAGCTCCCTCAGCACA | + |
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Preference number: 5 (lower is better) Translates to: NRKGSITFTGLNRQL*GPGVVAGGVSSLST Trigger: TGTGCTGAGGGAGCTGACCCCACCTGCTACGACACCAGGACCTCAGAGCTGTCTGTTAAGTCCTGTGAAAGTGATGCTCCCTTTCCGGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS TCA 90 bp | TTCCGCTCCAGCCCCTCCTTGGTGCAACACTCAGGAGTTCCAGGGTaGACCGGAAAGGGAGCATCACTTTCACAGGACTTAACAGACAGC | + |
|
Preference number: 5 (lower is better) Translates to: FRSSPSLVQHSGVPG*TGKGASLSQDLTDS Trigger: GCTGTCTGTTAAGTCCTGTGAAAGTGATGCTCCCTTTCCGGTTCACCCTGGAACTCCTGAGTGTTGCACCAAGGAGGGGCTGGAGCGGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CAA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGCGCTCCAGCCCCTCCTaGGTGCAACACTCAGGAGTT | + |
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Preference number: 5 (lower is better) Translates to: WKAISVVLDFVTSGNFPERSSPS*VQHSGV Trigger: AACTCCTGAGTGTTGCACCAAGGAGGGGCTGGAGCG...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS CCA 90 bp | GGTACTCTGACCACAGAGGTCTTTGCCAGTTGGCAACTTGATAGCTaGCAATTGAAGTGGTTCAGCAGCTGGCATGAAGTAGGTGCACAT | + |
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Preference number: 5 (lower is better) Translates to: GTLTTEVFASWQLDS*QLKWFSSWHEVGAH Trigger: ATGTGCACCTACTTCATGCCAGCTGCTGAACCACTTCAATTGCCAGCTATCAAGTTGCCAACTGGCAAAGACCTCTGTGGTCAGAGTACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS TCA 90 bp | AATACTCATACAGAAACTGGTCAGCAAATCCCTTTGGGTCCCTCCTaGAGGCCTCACAGATCTCATCATTTGTTGGTTCCACGTAGGTGG | + |
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Preference number: 5 (lower is better) Translates to: NTHTETGQQIPLGPS*RPHRSHHLLVPRRW Trigger: CCACCTACGTGGAACCAACAAATGATGAGATCTGTGAGGCCTTCAGGAGGGACCCAAAGGGATTTGCTGACCAGTTTCTGTATGAGTATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS CCA 90 bp | CTGGAACTTGAGTCCTTCTGCTTAGTTCAAATGTATACTGGTCCATaGCTTGTGTGGTACTCTGACCACAGAGGTCTTTGCCAGTTGGCA | + |
|
Preference number: 5 (lower is better) Translates to: LELESFCLVQMYTGP*LVWYSDHRGLCQLA Trigger: TGCCAACTGGCAAAGACCTCTGTGGTCAGAGTACCACACAAGCCATGGACCAGTATACATTTGAACTAAGCAGAAGGACTCAAGTTCCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS TCA 90 bp | CTGCTTAGTTCAAATGTATACTGGTCCATGGCTTGTGTGGTACTCTaGCCACAGAGGTCTTTGCCAGTTGGCAACTTGATAGCTGGCAAT | + |
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Preference number: 5 (lower is better) Translates to: LLSSNVYWSMACVVL*PQRSLPVGNLIAGN Trigger: ATTGCCAGCTATCAAGTTGCCAACTGGCAAAGACCTCTGTGGTCAGAGTACCACACAAGCCATGGACCAGTATACATTTGAACTAAGCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS CCA 90 bp | TCAGCACAGCACTCCTCAGTCAAGGAGACAACTTCCTTCACAAGCTaGTTGACCTGCTCAAATGTGCTACTGGAAAACTTCCTGCTATAT | + |
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Preference number: 5 (lower is better) Translates to: SAQHSSVKETTSFTS*LTCSNVLLENFLLY Trigger: ATATAGCAGGAAGTTTTCCAGTAGCACATTTGAGCAGGTCAACCAGCTTGTGAAGGAAGTTGTCTCCTTGACTGAGGAGTGCTGTGCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS TCA 90 bp | GATTTTTATTGTGTGCTCAGGCAGCTCACTGGCCATGCAATCCTCTaGGGTAGACTCACAACATCTGGACAGGATTTCAGTAAAGTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: DFYCVLRQLTGHAIL*GRLTTSGQDFSKVF Trigger: GAAGACTTTACTGAAATCCTGTCCAGATGTTGTGAGTCTACCTCAGAGGATTGCATGGCCAGTGAGCTGCCTGAGCACACAATAAAAATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS TCA 90 bp | TTCAGGGTTGGCTCCAGAACTTTGCTGAGGAACACTTCTGGAACTTaGGTCCTTCTGCTTAGTTCAAATGTATACTGGTCCATGGCTTGT | + |
|
Preference number: 5 (lower is better) Translates to: FRVGSRTLLRNTSGT*VLLLSSNVYWSMAC Trigger: ACAAGCCATGGACCAGTATACATTTGAACTAAGCAGAAGGACTCAAGTTCCAGAAGTGTTCCTCAGCAAAGTTCTGGAGCCAACCCTGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS CCA 90 bp | GCCAGTTGGCAACTTGATAGCTGGCAATTGAAGTGGTTCAGCAGCTaGCATGAAGTAGGTGCACATAAAAATGTTCATGGGTGTGTTTTC | + |
|
Preference number: 5 (lower is better) Translates to: ASWQLDSWQLKWFSS*HEVGAHKNVHGCVF Trigger: GAAAACACACCCATGAACATTTTTATGTGCACCTACTTCATGCCAGCTGCTGAACCACTTCAATTGCCAGCTATCAAGTTGCCAACTGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CAA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTTCTGCCGGAGAGGTGTaGGGTGTTTTTGTCCTTAGC | + |
|
Preference number: 5 (lower is better) Translates to: FCYQWQFSRVVQFKIQASSAGEV*GVFVLS Trigger: GCTAAGGACAAAAACACCCAACACCTCTCCGGCAGA...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS GCA 90 bp | CACTCCTCAGTCAAGGAGACAACTTCCTTCACAAGCTGGTTGACCTaGTCAAATGTGCTACTGGAAAACTTCCTGCTATATAGGATTAGT | + |
|
Preference number: 5 (lower is better) Translates to: HSSVKETTSFTSWLT*SNVLLENFLLYRIS Trigger: ACTAATCCTATATAGCAGGAAGTTTTCCAGTAGCACATTTGAGCAGGTCAACCAGCTTGTGAAGGAAGTTGTCTCCTTGACTGAGGAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS GCA 90 bp | TCTTGGTGTAAGCAACTAAAAGTGGCAGAGGCGCTTGTCCATAATTaGTGGAATACTCATACAGAAACTGGTCAGCAAATCCCTTTGGGT | + |
|
Preference number: 5 (lower is better) Translates to: SWCKQLKVAEALVHN*WNTHTETGQQIPLG Trigger: ACCCAAAGGGATTTGCTGACCAGTTTCTGTATGAGTATTCCAGCAATTATGGACAAGCGCCTCTGCCACTTTTAGTTGCTTACACCAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CAA 90 bp | TGGAAGGCCATCTCTGTGGTGCTTGATTTTGTTACCAGTGGCAATTTTCCAGAGCATGGGTGTGTTTTCTaGACAGCACTCTTCAAACTT | + |
|
Preference number: 5 (lower is better) Translates to: WKAISVVLDFVTSGNFPEHGCVF*TALFKL Trigger: AAGTTTGAAGAGTGCTGTCAAGAAAACACACCCATG...CTCTGGAAAATTGCCACTGGTAACAAAATCAAGCACCACAGAGATGGCCTTCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CAA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTGTTGGCTCCAGAACTTaGCTGAGGAACACTTCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: FCYQWQFSRVVQFKIQASVGSRT*LRNTSG Trigger: TCCAGAAGTGTTCCTCAGCAAAGTTCTGGAGCCAAC...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS GCA 90 bp | ATGCTTCATCTGGAGTCTCTCCTTCACAAAGCATACAGTTGGGTTTaGAGAAGTACAGCAGGATCCAACCATAGAGAGATAATTCTTGGT | + |
|
Preference number: 5 (lower is better) Translates to: MLHLESLLHKAYSWV*RSTAGSNHREIILG Trigger: ACCAAGAATTATCTCTCTATGGTTGGATCCTGCTGTACTTCTGCAAACCCAACTGTATGCTTTGTGAAGGAGAGACTCCAGATGAAGCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS GCA 90 bp | TATTGTGAGCAGACTCTGTTTGACATGGTGGTGAGAAGTGACAAATaGTTCATCTGGAGTCTCTCCTTCACAAAGCATACAGTTGGGTTT | + |
|
Preference number: 5 (lower is better) Translates to: YCEQTLFDMVVRSDK*FIWSLSFTKHTVGF Trigger: AAACCCAACTGTATGCTTTGTGAAGGAGAGACTCCAGATGAAGCATTTGTCACTTCTCACCACCATGTCAAACAGAGTCTGCTCACAATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CAA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTTCCTTCACAAGCTGGTaGACCTGCTCAAATGTGCTA | + |
|
Preference number: 5 (lower is better) Translates to: FCYQWQFSRVVQFKIQASSFTSW*TCSNVL Trigger: TAGCACATTTGAGCAGGTCAACCAGCTTGTGAAGGA...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CAA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTCACAGATCTCATCATTaGTTGGTTCCACGTAGGTGG | + |
|
Preference number: 5 (lower is better) Translates to: FCYQWQFSRVVQFKIQASHRSHH*LVPRRW Trigger: CCACCTACGTGGAACCAACAAATGATGAGATCTGTG...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CAA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTAGATCTCATCATTTGTaGGTTCCACGTAGGTGGGAA | + |
|
Preference number: 5 (lower is better) Translates to: FCYQWQFSRVVQFKIQASRSHHL*VPRRWE Trigger: TTCCCACCTACGTGGAACCAACAAATGATGAGATCT...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CAA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTTTTGACAGATTTTTATaGTGTGCTCAGGCAGCTCAC | + |
|
Preference number: 5 (lower is better) Translates to: FCYQWQFSRVVQFKIQASFDRFL*CAQAAH Trigger: GTGAGCTGCCTGAGCACACAATAAAAATCTGTCAAA...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS TCA 90 bp | TGCTACTGGAAAACTTCCTGCTATATAGGATTAGTGATAAAGATCTaGAGTCCTCTTTCCCCAGCATGGCGAGTTCATTGCAAACTTTAT | + |
|
Preference number: 5 (lower is better) Translates to: CYWKTSCYIGLVIKI*SPLSPAWRVHCKLY Trigger: ATAAAGTTTGCAATGAACTCGCCATGCTGGGGAAAGAGGACTTCAGATCTTTATCACTAATCCTATATAGCAGGAAGTTTTCCAGTAGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS-3UTR CAA 90 bp | TTTTGTTACCAGTGGCAATTTTCCAGAGTGGTTCAGTTCAAGATCCAAGCTAGTATCTGCACACATTTCTaGACCTTTTTCGATGAAAGA | + |
|
Preference number: 5 (lower is better) Translates to: FCYQWQFSRVVQFKIQASICTHF*TFFDER Trigger: TCTTTCATCGAAAAAGGTCAAGAAATGTGTGCAGAT...ACTAGCTTGGATCTTGAACTGAACCACTCTGGAAAATTGCCACTGGTAACAAAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS TCA 72 bp | GTTCCACGTAGGTGGGAAATTCCTGCGGCTGGTGACTaGGGGCAGCCATGCAGAGTTTCCGCTCCAGCCCCT | + |
|
Preference number: 6 (lower is better) Translates to: VPRRWEIPAAGD*GQPCRVSAPAP Trigger: AGGGGCTGGAGCGGAAACTCTGCATGGCTGCCCTCAGTCACCAGCCGCAGGAATTTCCCACCTACGTGGAAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS TCA 72 bp | GGGAGCATCACTTTCACAGGACTTAACAGACAGCTCTaGGGTCCTGGTGTCGTAGCAGGTGGGGTCAGCTCC | + |
|
Preference number: 6 (lower is better) Translates to: GSITFTGLNRQL*GPGVVAGGVSS Trigger: GGAGCTGACCCCACCTGCTACGACACCAGGACCTCAGAGCTGTCTGTTAAGTCCTGTGAAAGTGATGCTCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS TCA 72 bp | AGCCCCTCCTTGGTGCAACACTCAGGAGTTCCAGGGTaGACCGGAAAGGGAGCATCACTTTCACAGGACTTA | + |
|
Preference number: 6 (lower is better) Translates to: SPSLVQHSGVPG*TGKGASLSQDL Trigger: TAAGTCCTGTGAAAGTGATGCTCCCTTTCCGGTTCACCCTGGAACTCCTGAGTGTTGCACCAAGGAGGGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS CCA 72 bp | CTGAGTGTCACAGCACTCCCTAAGGGTTTTCAGGGTTaGCTCCAGAACTTTGCTGAGGAACACTTCTGGAAC | + |
|
Preference number: 6 (lower is better) Translates to: LSVTALPKGFQG*LQNFAEEHFWN Trigger: GTTCCAGAAGTGTTCCTCAGCAAAGTTCTGGAGCCAACCCTGAAAACCCTTAGGGAGTGCTGTGACACTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000049209.13 ENSMUST00000200534.2 |
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| CDS CAA 72 bp | GAGGTCTTTGCCAGTTGGCAACTTGATAGCTGGCAATaGAAGTGGTTCAGCAGCTGGCATGAAGTAGGTGCA | + |
|
Preference number: 6 (lower is better) Translates to: EVFASWQLDSWQ*KWFSSWHEVGA Trigger: TGCACCTACTTCATGCCAGCTGCTGAACCACTTCAATTGCCAGCTATCAAGTTGCCAACTGGCAAAGACCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS TCA 72 bp | ACAGAAACTGGTCAGCAAATCCCTTTGGGTCCCTCCTaGAGGCCTCACAGATCTCATCATTTGTTGGTTCCA | + |
|
Preference number: 6 (lower is better) Translates to: TETGQQIPLGPS*RPHRSHHLLVP Trigger: TGGAACCAACAAATGATGAGATCTGTGAGGCCTTCAGGAGGGACCCAAAGGGATTTGCTGACCAGTTTCTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS CCA 72 bp | ACCACAGAGGTCTTTGCCAGTTGGCAACTTGATAGCTaGCAATTGAAGTGGTTCAGCAGCTGGCATGAAGTA | + |
|
Preference number: 6 (lower is better) Translates to: TTEVFASWQLDS*QLKWFSSWHEV Trigger: TACTTCATGCCAGCTGCTGAACCACTTCAATTGCCAGCTATCAAGTTGCCAACTGGCAAAGACCTCTGTGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS CCA 72 bp | TTGTGTGGTACTCTGACCACAGAGGTCTTTGCCAGTTaGCAACTTGATAGCTGGCAATTGAAGTGGTTCAGC | + |
|
Preference number: 6 (lower is better) Translates to: LCGTLTTEVFAS*QLDSWQLKWFS Trigger: GCTGAACCACTTCAATTGCCAGCTATCAAGTTGCCAACTGGCAAAGACCTCTGTGGTCAGAGTACCACACAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS CCA 72 bp | TCTCCACCATGTCTTTCAGCTCTGCCGGAGAGGTGTTaGGTGTTTTTGTCCTTAGCCGTTCTGCCAATTTTT | + |
|
Preference number: 6 (lower is better) Translates to: SPPCLSALPERC*VFLSLAVLPIF Trigger: AAAAATTGGCAGAACGGCTAAGGACAAAAACACCCAACACCTCTCCGGCAGAGCTGAAAGACATGGTGGAGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000049209.13 ENSMUST00000200534.2 |
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| CDS CAA 90 bp | GCACAGCACTCCTCAGTCAAGGAGACAACTTCCTTCACAAGCTGGTaGACCTGCTCAAATGTGCTACTGGAAAACTTCCTGCTATATAGG | + |
|
Preference number: 6 (lower is better) Translates to: AQHSSVKETTSFTSW*TCSNVLLENFLLYR Trigger: CCTATATAGCAGGAAGTTTTCCAGTAGCACATTTGAGCAGGTCAACCAGCTTGTGAAGGAAGTTGTCTCCTTGACTGAGGAGTGCTGTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS CCA 72 bp | TGCTTAGTTCAAATGTATACTGGTCCATGGCTTGTGTaGTACTCTGACCACAGAGGTCTTTGCCAGTTGGCA | + |
|
Preference number: 6 (lower is better) Translates to: CLVQMYTGPWLV*YSDHRGLCQLA Trigger: TGCCAACTGGCAAAGACCTCTGTGGTCAGAGTACCACACAAGCCATGGACCAGTATACATTTGAACTAAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS CAA 72 bp | TCCTCAGTCAAGGAGACAACTTCCTTCACAAGCTGGTaGACCTGCTCAAATGTGCTACTGGAAAACTTCCTG | + |
|
Preference number: 6 (lower is better) Translates to: SSVKETTSFTSW*TCSNVLLENFL Trigger: CAGGAAGTTTTCCAGTAGCACATTTGAGCAGGTCAACCAGCTTGTGAAGGAAGTTGTCTCCTTGACTGAGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS TCA 72 bp | TCAAATGTATACTGGTCCATGGCTTGTGTGGTACTCTaGCCACAGAGGTCTTTGCCAGTTGGCAACTTGATA | + |
|
Preference number: 6 (lower is better) Translates to: SNVYWSMACVVL*PQRSLPVGNLI Trigger: TATCAAGTTGCCAACTGGCAAAGACCTCTGTGGTCAGAGTACCACACAAGCCATGGACCAGTATACATTTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS GCA 72 bp | CTGGAGTCTCTCCTTCACAAAGCATACAGTTGGGTTTaGAGAAGTACAGCAGGATCCAACCATAGAGAGATA | + |
|
Preference number: 6 (lower is better) Translates to: LESLLHKAYSWV*RSTAGSNHREI Trigger: TATCTCTCTATGGTTGGATCCTGCTGTACTTCTGCAAACCCAACTGTATGCTTTGTGAAGGAGAGACTCCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS GCA 72 bp | GTCAAGGAGACAACTTCCTTCACAAGCTGGTTGACCTaGTCAAATGTGCTACTGGAAAACTTCCTGCTATAT | + |
|
Preference number: 6 (lower is better) Translates to: VKETTSFTSWLT*SNVLLENFLLY Trigger: ATATAGCAGGAAGTTTTCCAGTAGCACATTTGAGCAGGTCAACCAGCTTGTGAAGGAAGTTGTCTCCTTGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS GCA 72 bp | CAGACTCTGTTTGACATGGTGGTGAGAAGTGACAAATaGTTCATCTGGAGTCTCTCCTTCACAAAGCATACA | + |
|
Preference number: 6 (lower is better) Translates to: QTLFDMVVRSDK*FIWSLSFTKHT Trigger: TGTATGCTTTGTGAAGGAGAGACTCCAGATGAAGCATTTGTCACTTCTCACCACCATGTCAAACAGAGTCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS CCA 72 bp | CAACTAAAAGTGGCAGAGGCGCTTGTCCATAATTGCTaGAATACTCATACAGAAACTGGTCAGCAAATCCCT | + |
|
Preference number: 6 (lower is better) Translates to: QLKVAEALVHNC*NTHTETGQQIP Trigger: AGGGATTTGCTGACCAGTTTCTGTATGAGTATTCCAGCAATTATGGACAAGCGCCTCTGCCACTTTTAGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS GCA 72 bp | AAGCAACTAAAAGTGGCAGAGGCGCTTGTCCATAATTaGTGGAATACTCATACAGAAACTGGTCAGCAAATC | + |
|
Preference number: 6 (lower is better) Translates to: KQLKVAEALVHN*WNTHTETGQQI Trigger: GATTTGCTGACCAGTTTCTGTATGAGTATTCCAGCAATTATGGACAAGCGCCTCTGCCACTTTTAGTTGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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| CDS TCA 72 bp | AAAACTTCCTGCTATATAGGATTAGTGATAAAGATCTaGAGTCCTCTTTCCCCAGCATGGCGAGTTCATTGC | + |
|
Preference number: 6 (lower is better) Translates to: KTSCYIGLVIKI*SPLSPAWRVHC Trigger: GCAATGAACTCGCCATGCTGGGGAAAGAGGACTTCAGATCTTTATCACTAATCCTATATAGCAGGAAGTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000049209.13 |
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