Pregenerated sensors for GBX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000067724Ensembl transcript IDs: ENSMUST00000088311.6
Found 105 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTGGCAAGCCAAAAACCTGGGCTCTGGCCACTCCCCCAGGGTTTCTaGCTTGCGGCTTGCCTCCTGTTTCTCTGGACCTGGACAGCAACT | + |
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Preference number: 1 (lower is better) Translates to: VASQKPGLWPLPQGF*LAACLLFLWTWTAT Trigger: AGTTGCTGTCCAGGTCCAGAGAAACAGGAGGCAAGCCGCAAGGCAGAAACCCTGGGGGAGTGGCCAGAGCCCAGGTTTTTGGCTTGCCAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR CCA 90 bp | AGGTTGACTAGTTCGCCCCATAGCTCGCCAGTGCTGAGGGTGGCCTaGAAGGCAGGTCAGGAATGTGAGTGTGTGTGCTTGCTCCCCTCC | + |
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Preference number: 1 (lower is better) Translates to: RLTSSPHSSPVLRVA*KAGQECECVCLLPS Trigger: GGAGGGGAGCAAGCACACACACTCACATTCCTGACCTGCCTTCCAGGCCACCCTCAGCACTGGCGAGCTATGGGGCGAACTAGTCAACCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR CCA 90 bp | AGTTGCTTGGGCTGGCTCCCTCTGCTTAGCACTGTTGCAGCTGTGTaGCAAGCCAAAAACCTGGGCTCTGGCCACTCCCCCAGGGTTTCT | + |
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Preference number: 1 (lower is better) Translates to: SCLGWLPLLSTVAAV*QAKNLGSGHSPRVS Trigger: AGAAACCCTGGGGGAGTGGCCAGAGCCCAGGTTTTTGGCTTGCCACACAGCTGCAACAGTGCTAAGCAGAGGGAGCCAGCCCAAGCAACT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR TCA 90 bp | GTTGACTCTGAGGTAACCCTGGCTGGGAATGAGCTGGGCCAAGCCTaGCCAGAGAGACGGCCTACTCCGATCTGTAGCCTCACTAGAGAG | + |
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Preference number: 1 (lower is better) Translates to: VDSEVTLAGNELGQA*PERRPTPICSLTRE Trigger: CTCTCTAGTGAGGCTACAGATCGGAGTAGGCCGTCTCTCTGGTCAGGCTTGGCCCAGCTCATTCCCAGCCAGGGTTACCTCAGAGTCAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR CCA 90 bp | AATCTTCGCTCCCTAAGGTCTCTGCAGATACCTAGAGCCCGGTTGTaGGGTTTACCTCATCTGCCCACAATCTCTGCCTCCACCCTCCTG | + |
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Preference number: 1 (lower is better) Translates to: NLRSLRSLQIPRARL*GLPHLPTISASTLL Trigger: CAGGAGGGTGGAGGCAGAGATTGTGGGCAGATGAGGTAAACCCCACAACCGGGCTCTAGGTATCTGCAGAGACCTTAGGGAGCGAAGATT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR CCA 90 bp | CCCAAAGAGAAGACATCAGAAGCAGATGGGTTTGTTCACAGGAAGTaGGGATACAGTAGCCCAATGGGAACAGAAGGTGTGGGAATACAC | + |
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Preference number: 1 (lower is better) Translates to: PKEKTSEADGFVHRK*GYSSPMGTEGVGIH Trigger: GTGTATTCCCACACCTTCTGTTCCCATTGGGCTACTGTATCCCCACTTCCTGTGAACAAACCCATCTGCTTCTGATGTCTTCTCTTTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR GCA 90 bp | TGCTTGCTCCCCTCCCTTGCCAGCAACTTTATGGATAAAGCAGCTTaGTTTATCCATAGCTTCTTCGTCTTTATTCCTTTCCCCCTAATC | + |
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Preference number: 1 (lower is better) Translates to: CLLPSLASNFMDKAA*FIHSFFVFIPFPLI Trigger: GATTAGGGGGAAAGGAATAAAGACGAAGAAGCTATGGATAAAGCAAGCTGCTTTATCCATAAAGTTGCTGGCAAGGGAGGGGAGCAAGCA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR CCA 90 bp | TATCTTTCTGTAATGGAAGAGGCTGGTGGGAACCCAACTTCACAATaGAATGGGCAGGAGAAAACACAGCTAAAGTTGCAAGAACAGACA | + |
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Preference number: 1 (lower is better) Translates to: YLSVMEEAGGNPTSQ*NGQEKTQLKLQEQT Trigger: TGTCTGTTCTTGCAACTTTAGCTGTGTTTTCTCCTGCCCATTCCATTGTGAAGTTGGGTTCCCACCAGCCTCTTCCATTACAGAAAGATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR-3UTR GCA 90 bp | TGGCCACTCCCCCAGGGTTTCTGCCTTGCGGCTTGCCTCCTGTTTCTCTGGACCTCTGCCCACAATCTCTaGCTCCACCCTCCTGGACTC | + |
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Preference number: 2 (lower is better) Translates to: WPLPQGFCLAACLLFLWTSAHNL*LHPPGL Trigger: GAGTCCAGGAGGGTGGAGGCAGAGATTGTGGGCAGA...GGTCCAGAGAAACAGGAGGCAAGCCGCAAGGCAGAAACCCTGGGGGAGTGGCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR-3UTR CCA 90 bp | ACTCCCCCAGGGTTTCTGCCTTGCGGCTTGCCTCCTGTTTCTCTGGACCTGGACAGAACAGACAGGCAGTaGGCCTCTGCCCCAGGCTCT | + |
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Preference number: 2 (lower is better) Translates to: TPPGFLPCGLPPVSLDLDRTDRQ*ASAPGS Trigger: AGAGCCTGGGGCAGAGGCCCACTGCCTGTCTGTTCT...GTCCAGGTCCAGAGAAACAGGAGGCAAGCCGCAAGGCAGAAACCCTGGGGGAGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR CAA 90 bp | CTCCAAAACCAAGTTGCTTGGGCTGGCTCCCTCTGCTTAGCACTGTaGCAGCTGTGTGGCAAGCCAAAAACCTGGGCTCTGGCCACTCCC | + |
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Preference number: 2 (lower is better) Translates to: LQNQVAWAGSLCLAL*QLCGKPKTWALATP Trigger: GGGAGTGGCCAGAGCCCAGGTTTTTGGCTTGCCACACAGCTGCAACAGTGCTAAGCAGAGGGAGCCAGCCCAAGCAACTTGGTTTTGGAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR-3UTR GCA 90 bp | ACAGGACAGACTAGTCCCCAGACTCTCCAAAACCAAGTTGCTTGGGCTGGCTCCCAGGCAGTGGGCCTCTaGCCCAGGCTCTGGCATATA | + |
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Preference number: 2 (lower is better) Translates to: TGQTSPQTLQNQVAWAGSQAVGL*PRLWHI Trigger: TATATGCCAGAGCCTGGGGCAGAGGCCCACTGCCTG...GGAGCCAGCCCAAGCAACTTGGTTTTGGAGAGTCTGGGGACTAGTCTGTCCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR-3UTR TCA 90 bp | TGGCCACTCCCCCAGGGTTTCTGCCTTGCGGCTTGCCTCCTGTTTCTCTGGACCAAGTATGTCTCTTCCTaGAGTGTGCTGCTTCTCCCA | + |
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Preference number: 2 (lower is better) Translates to: WPLPQGFCLAACLLFLWTKYVSS*SVLLLP Trigger: TGGGAGAAGCAGCACACTTCAGGAAGAGACATACTT...GGTCCAGAGAAACAGGAGGCAAGCCGCAAGGCAGAAACCCTGGGGGAGTGGCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR-3UTR GCA 90 bp | ACAGGACAGACTAGTCCCCAGACTCTCCAAAACCAAGTTGCTTGGGCTGGCTCCGAATGTGAGTGTGTGTaGTTGCTCCCCTCCCTTGCC | + |
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Preference number: 2 (lower is better) Translates to: TGQTSPQTLQNQVAWAGSECECV*LLPSLA Trigger: GGCAAGGGAGGGGAGCAAGCACACACACTCACATTC...GGAGCCAGCCCAAGCAACTTGGTTTTGGAGAGTCTGGGGACTAGTCTGTCCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR CAA 90 bp | AACAATCTTCGCTCCCTAAGGTCTCTGCAGATACCTAGAGCCCGGTaGTGGGGTTTACCTCATCTGCCCACAATCTCTGCCTCCACCCTC | + |
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Preference number: 2 (lower is better) Translates to: NNLRSLRSLQIPRAR*WGLPHLPTISASTL Trigger: GAGGGTGGAGGCAGAGATTGTGGGCAGATGAGGTAAACCCCACAACCGGGCTCTAGGTATCTGCAGAGACCTTAGGGAGCGAAGATTGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR-3UTR TCA 90 bp | ACAGGACAGACTAGTCCCCAGACTCTCCAAAACCAAGTTGCTTGGGCTGGCTCCCCCCCATATTGGCCATaGCAGTTCCATTTCATGCCC | + |
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Preference number: 2 (lower is better) Translates to: TGQTSPQTLQNQVAWAGSPPYWP*QFHFMP Trigger: GGGCATGAAATGGAACTGTCATGGCCAATATGGGGG...GGAGCCAGCCCAAGCAACTTGGTTTTGGAGAGTCTGGGGACTAGTCTGTCCTGT 54% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR CAA 90 bp | AACCCAACTTCACAATGGAATGGGCAGGAGAAAACACAGCTAAAGTaGCAAGAACAGACAGGCAGTGGGCCTCTGCCCCAGGCTCTGGCA | + |
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Preference number: 2 (lower is better) Translates to: NPTSQWNGQEKTQLK*QEQTGSGPLPQALA Trigger: TGCCAGAGCCTGGGGCAGAGGCCCACTGCCTGTCTGTTCTTGCAACTTTAGCTGTGTTTTCTCCTGCCCATTCCATTGTGAAGTTGGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR-3UTR TCA 90 bp | AAGTTGCAAGAACAGACAGGCAGTGGGCCTCTGCCCCAGGCTCTGGCATATAAAAACCACGGAAGCCTCTaGGCCCTGGGCATTTCATAT | + |
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Preference number: 2 (lower is better) Translates to: KLQEQTGSGPLPQALAYKNHGSL*ALGISY Trigger: ATATGAAATGCCCAGGGCTCAGAGGCTTCCGTGGTT...TTTATATGCCAGAGCCTGGGGCAGAGGCCCACTGCCTGTCTGTTCTTGCAACTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR-3UTR CCA 90 bp | TTTGTTCACAGGAAGTGGGGATACAGTAGCCCAATGGGAACAGAAGGTGTGGGAGAAGCCTCTGAGCCCTaGGCATTTCATATCCCCACC | + |
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Preference number: 2 (lower is better) Translates to: FVHRKWGYSSPMGTEGVGEASEP*AFHIPT Trigger: GGTGGGGATATGAAATGCCCAGGGCTCAGAGGCTTC...TCCCACACCTTCTGTTCCCATTGGGCTACTGTATCCCCACTTCCTGTGAACAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR-3UTR GCA 90 bp | CGGCCTACTCCGATCTGTAGCCTCACTAGAGAGTTGCTTGGGAGAAATGAAGTAGGGGTTTACCTCATCTaGCCACAATCTCTGCCTCCA | + |
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Preference number: 2 (lower is better) Translates to: RPTPICSLTRELLGRNEVGVYLI*PQSLPP Trigger: TGGAGGCAGAGATTGTGGGCAGATGAGGTAAACCCC...TACTTCATTTCTCCCAAGCAACTCTCTAGTGAGGCTACAGATCGGAGTAGGCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR-3UTR CCA 90 bp | GAATGTGAGTGTGTGTGCTTGCTCCCCTCCCTTGCCAGCAACTTTATGGATAAAGTACCCAGTGAGTCTTaGGCGGCCACAGGTTCAGAT | + |
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Preference number: 2 (lower is better) Translates to: ECECVCLLPSLASNFMDKVPSES*AATGSD Trigger: ATCTGAACCTGTGGCCGCCCAAGACTCACTGGGTAC...TTTATCCATAAAGTTGCTGGCAAGGGAGGGGAGCAAGCACACACACTCACATTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR CAA 90 bp | GGAAGGCAGGTCAGGAATGTGAGTGTGTGTGCTTGCTCCCCTCCCTaGCCAGCAACTTTATGGATAAAGCAGCTTGCTTTATCCATAGCT | + |
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Preference number: 2 (lower is better) Translates to: GRQVRNVSVCACSPP*PATLWIKQLALSIA Trigger: AGCTATGGATAAAGCAAGCTGCTTTATCCATAAAGTTGCTGGCAAGGGAGGGGAGCAAGCACACACACTCACATTCCTGACCTGCCTTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR-3UTR GCA 90 bp | CGGCCTACTCCGATCTGTAGCCTCACTAGAGAGTTGCTTGGGAGAAATGAAGTAGACAGTTCCATTTCATaGCCTTGCATGTCCTTGTGC | + |
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Preference number: 2 (lower is better) Translates to: RPTPICSLTRELLGRNEVDSSIS*PCMSLC Trigger: GCACAAGGACATGCAAGGGCATGAAATGGAACTGTC...TACTTCATTTCTCCCAAGCAACTCTCTAGTGAGGCTACAGATCGGAGTAGGCCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR-3UTR CCA 90 bp | CATCTGACAGTGGCTGCTTTTAGCCTATCTTTCTGTAATGGAAGAGGCTGGTGGTGGGAACAGAAGGTGTaGGAATACACTGGAGTGACG | + |
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Preference number: 2 (lower is better) Translates to: HLTVAAFSLSFCNGRGWWWEQKV*EYTGVT Trigger: CGTCACTCCAGTGTATTCCCACACCTTCTGTTCCCA...CCACCAGCCTCTTCCATTACAGAAAGATAGGCTAAAAGCAGCCACTGTCAGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR-3UTR CCA 90 bp | CATCTGACAGTGGCTGCTTTTAGCCTATCTTTCTGTAATGGAAGAGGCTGGTGGTTCCCAGTCCCCTTTTaGGATACAGACAGACAAAGA | + |
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Preference number: 2 (lower is better) Translates to: HLTVAAFSLSFCNGRGWWFPVPF*DTDRQR Trigger: TCTTTGTCTGTCTGTATCCCAAAAGGGGACTGGGAA...CCACCAGCCTCTTCCATTACAGAAAGATAGGCTAAAAGCAGCCACTGTCAGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR-3UTR CCA 90 bp | CGGCCTACTCCGATCTGTAGCCTCACTAGAGAGTTGCTTGGGAGAAATGAAGTAAACTTCACAATGGAATaGGCAGGAGAAAACACAGCT | + |
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Preference number: 2 (lower is better) Translates to: RPTPICSLTRELLGRNEVNFTME*AGENTA Trigger: AGCTGTGTTTTCTCCTGCCCATTCCATTGTGAAGTT...TACTTCATTTCTCCCAAGCAACTCTCTAGTGAGGCTACAGATCGGAGTAGGCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR-3UTR CCA 90 bp | ACTCACCCTTGTCCTATCCATCTGACAGTGGCTGCTTTTAGCCTATCTTTCTGTGACATCAGAAGCAGATaGGTTTGTTCACAGGAAGTG | + |
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Preference number: 2 (lower is better) Translates to: THPCPIHLTVAAFSLSFCDIRSR*VCSQEV Trigger: CACTTCCTGTGAACAAACCCATCTGCTTCTGATGTC...ACAGAAAGATAGGCTAAAAGCAGCCACTGTCAGATGGATAGGACAAGGGTGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR-3UTR TCA 90 bp | GCAGCTTGCTTTATCCATAGCTTCTTCGTCTTTATTCCTTTCCCCCTAATCCACCCCTTCAGTGCAAACTaGAGTATGTCTCTTCCTGAA | + |
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Preference number: 2 (lower is better) Translates to: AACFIHSFFVFIPFPLIHPFSAN*SMSLPE Trigger: TTCAGGAAGAGACATACTTCAGTTTGCACTGAAGGG...GTGGATTAGGGGGAAAGGAATAAAGACGAAGAAGCTATGGATAAAGCAAGCTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR CCA 72 bp | GGCTGGCTCCCTCTGCTTAGCACTGTTGCAGCTGTGTaGCAAGCCAAAAACCTGGGCTCTGGCCACTCCCCC | + |
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Preference number: 3 (lower is better) Translates to: GWLPLLSTVAAV*QAKNLGSGHSP Trigger: GGGGGAGTGGCCAGAGCCCAGGTTTTTGGCTTGCCACACAGCTGCAACAGTGCTAAGCAGAGGGAGCCAGCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR GCA 72 bp | CAAAAACCTGGGCTCTGGCCACTCCCCCAGGGTTTCTaGCTTGCGGCTTGCCTCCTGTTTCTCTGGACCTGG | + |
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Preference number: 3 (lower is better) Translates to: QKPGLWPLPQGF*LAACLLFLWTW Trigger: CCAGGTCCAGAGAAACAGGAGGCAAGCCGCAAGGCAGAAACCCTGGGGGAGTGGCCAGAGCCCAGGTTTTTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR CCA 72 bp | AGTTCGCCCCATAGCTCGCCAGTGCTGAGGGTGGCCTaGAAGGCAGGTCAGGAATGTGAGTGTGTGTGCTTG | + |
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Preference number: 3 (lower is better) Translates to: SSPHSSPVLRVA*KAGQECECVCL Trigger: CAAGCACACACACTCACATTCCTGACCTGCCTTCCAGGCCACCCTCAGCACTGGCGAGCTATGGGGCGAACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR GCA 72 bp | CCGGTTGTGGGGTTTACCTCATCTGCCCACAATCTCTaGCTCCACCCTCCTGGACTCACCCTTGTCCTATCC | + |
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Preference number: 3 (lower is better) Translates to: PVVGFTSSAHNL*LHPPGLTLVLS Trigger: GGATAGGACAAGGGTGAGTCCAGGAGGGTGGAGGCAGAGATTGTGGGCAGATGAGGTAAACCCCACAACCGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR CCA 72 bp | CCCCCTCAGGCCTTAACCACGGAAGCCTCTGAGCCCTaGGCATTTCATATCCCCACCTCAGGAATCCACTTC | + |
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Preference number: 3 (lower is better) Translates to: PPQALTTEASEP*AFHIPTSGIHF Trigger: GAAGTGGATTCCTGAGGTGGGGATATGAAATGCCCAGGGCTCAGAGGCTTCCGTGGTTAAGGCCTGAGGGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR CCA 72 bp | TTAGCACTGTTGCAGCTGTGTGGCAAGCCAAAAACCTaGGCTCTGGCCACTCCCCCAGGGTTTCTGCCTTGC | + |
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Preference number: 3 (lower is better) Translates to: LALLQLCGKPKT*ALATPPGFLPC Trigger: GCAAGGCAGAAACCCTGGGGGAGTGGCCAGAGCCCAGGTTTTTGGCTTGCCACACAGCTGCAACAGTGCTAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR GCA 72 bp | AGATACCTAGAGCCCGGTTGTGGGGTTTACCTCATCTaGCCACAATCTCTGCCTCCACCCTCCTGGACTCAC | + |
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Preference number: 3 (lower is better) Translates to: RYLEPGCGVYLI*PQSLPPPSWTH Trigger: GTGAGTCCAGGAGGGTGGAGGCAGAGATTGTGGGCAGATGAGGTAAACCCCACAACCGGGCTCTAGGTATCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR GCA 72 bp | GTGGCCTGGAAGGCAGGTCAGGAATGTGAGTGTGTGTaGTTGCTCCCCTCCCTTGCCAGCAACTTTATGGAT | + |
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Preference number: 3 (lower is better) Translates to: VAWKAGQECECV*LLPSLASNFMD Trigger: ATCCATAAAGTTGCTGGCAAGGGAGGGGAGCAAGCACACACACTCACATTCCTGACCTGCCTTCCAGGCCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR CCA 72 bp | CAGACTAGTCCCCAGACTCTCCAAAACCAAGTTGCTTaGGCTGGCTCCCTCTGCTTAGCACTGTTGCAGCTG | + |
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Preference number: 3 (lower is better) Translates to: QTSPQTLQNQVA*AGSLCLALLQL Trigger: CAGCTGCAACAGTGCTAAGCAGAGGGAGCCAGCCCAAGCAACTTGGTTTTGGAGAGTCTGGGGACTAGTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR GCA 72 bp | CCTGGAAGGCAGGTCAGGAATGTGAGTGTGTGTGCTTaGTCCCCTCCCTTGCCAGCAACTTTATGGATAAAG | + |
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Preference number: 3 (lower is better) Translates to: PGRQVRNVSVCA*SPPLPATLWIK Trigger: CTTTATCCATAAAGTTGCTGGCAAGGGAGGGGAGCAAGCACACACACTCACATTCCTGACCTGCCTTCCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR GCA 72 bp | ACTCTCCAAAACCAAGTTGCTTGGGCTGGCTCCCTCTaGTTAGCACTGTTGCAGCTGTGTGGCAAGCCAAAA | + |
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Preference number: 3 (lower is better) Translates to: TLQNQVAWAGSL*LALLQLCGKPK Trigger: TTTTGGCTTGCCACACAGCTGCAACAGTGCTAAGCAGAGGGAGCCAGCCCAAGCAACTTGGTTTTGGAGAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR CCA 72 bp | AGTAGCCCAATGGGAACAGAAGGTGTGGGAATACACTaGAGTGACGAGGGAGCTGCTGAAGACCCCCATATT | + |
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Preference number: 3 (lower is better) Translates to: SSPMGTEGVGIH*SDEGAAEDPHI Trigger: AATATGGGGGTCTTCAGCAGCTCCCTCGTCACTCCAGTGTATTCCCACACCTTCTGTTCCCATTGGGCTACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR-3UTR CAA 90 bp | GACAGCAACTCTGCTGAAGAGGTAACATTTAACCTCCAACTCCTGTGTAGAGCATGTGAGTGTGTGTGCTaGCTCCCCTCCCTTGCCAGC | + |
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Preference number: 3 (lower is better) Translates to: DSNSAEEVTFNLQLLCRACECVC*LPSLAS Trigger: GCTGGCAAGGGAGGGGAGCAAGCACACACACTCACA...TGCTCTACACAGGAGTTGGAGGTTAAATGTTACCTCTTCAGCAGAGTTGCTGTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR GCA 72 bp | GACGGCCTACTCCGATCTGTAGCCTCACTAGAGAGTTaGTTGGGAGAAATGAAGTACCAAGGACAGAGACCA | + |
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Preference number: 3 (lower is better) Translates to: DGLLRSVASLES*LGEMKYQGQRP Trigger: TGGTCTCTGTCCTTGGTACTTCATTTCTCCCAAGCAACTCTCTAGTGAGGCTACAGATCGGAGTAGGCCGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR CCA 72 bp | GGTTTGTTCACAGGAAGTGGGGATACAGTAGCCCAATaGGAACAGAAGGTGTGGGAATACACTGGAGTGACG | + |
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Preference number: 3 (lower is better) Translates to: GLFTGSGDTVAQ*EQKVWEYTGVT Trigger: CGTCACTCCAGTGTATTCCCACACCTTCTGTTCCCATTGGGCTACTGTATCCCCACTTCCTGTGAACAAACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR-3UTR CAA 90 bp | CTCCCTTCAGTGCAAACTGAAGTATGTCTCTTCCTGAAGTGTGCTGCTTCTCCCCAGAAGCAGATGGGTTaGTTCACAGGAAGTGGGGAT | + |
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Preference number: 3 (lower is better) Translates to: LPSVQTEVCLFLKCAASPQKQMG*FTGSGD Trigger: ATCCCCACTTCCTGTGAACAAACCCATCTGCTTCTG...GGGAGAAGCAGCACACTTCAGGAAGAGACATACTTCAGTTTGCACTGAAGGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR TCA 72 bp | GGTGGTGGAGTACGCTTCCTGCCCTGCCTTAATCACTaGCCGGACAGCATCTTCTATGTAGATAACTTGAAC | + |
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Preference number: 3 (lower is better) Translates to: GGGVRFLPCLNH*PDSIFYVDNLN Trigger: GTTCAAGTTATCTACATAGAAGATGCTGTCCGGTCAGTGATTAAGGCAGGGCAGGAAGCGTACTCCACCACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR TCA 72 bp | CTCCACCCTCCTGGACTCACCCTTGTCCTATCCATCTaGCAGTGGCTGCTTTTAGCCTATCTTTCTGTAATG | + |
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Preference number: 3 (lower is better) Translates to: LHPPGLTLVLSI*QWLLLAYLSVM Trigger: CATTACAGAAAGATAGGCTAAAAGCAGCCACTGTCAGATGGATAGGACAAGGGTGAGTCCAGGAGGGTGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR CCA 72 bp | GGAAGAGGCTGGTGGGAACCCAACTTCACAATGGAATaGGCAGGAGAAAACACAGCTAAAGTTGCAAGAACA | + |
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Preference number: 3 (lower is better) Translates to: GRGWWEPNFTME*AGENTAKVART Trigger: TGTTCTTGCAACTTTAGCTGTGTTTTCTCCTGCCCATTCCATTGTGAAGTTGGGTTCCCACCAGCCTCTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR CCA 72 bp | GCTGCTTTTAGCCTATCTTTCTGTAATGGAAGAGGCTaGTGGGAACCCAACTTCACAATGGAATGGGCAGGA | + |
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Preference number: 3 (lower is better) Translates to: AAFSLSFCNGRG*WEPNFTMEWAG Trigger: TCCTGCCCATTCCATTGTGAAGTTGGGTTCCCACCAGCCTCTTCCATTACAGAAAGATAGGCTAAAAGCAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| 3UTR GCA 72 bp | GCATATAAAAGAGAGGAAGACAGAAATGAGGCTGTGTaGCCCTGTAAAGGAATCCCCTCTCTGTTCAGCTCA | + |
|
Preference number: 3 (lower is better) Translates to: AYKREEDRNEAV*PCKGIPSLFSS Trigger: TGAGCTGAACAGAGAGGGGATTCCTTTACAGGGGCACACAGCCTCATTTCTGTCTTCCTCTCTTTTATATGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| 3UTR CCA 72 bp | GCTTTTAGCCTATCTTTCTGTAATGGAAGAGGCTGGTaGGAACCCAACTTCACAATGGAATGGGCAGGAGAA | + |
|
Preference number: 3 (lower is better) Translates to: AFSLSFCNGRGW*EPNFTMEWAGE Trigger: TTCTCCTGCCCATTCCATTGTGAAGTTGGGTTCCCACCAGCCTCTTCCATTACAGAAAGATAGGCTAAAAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| 3UTR GCA 72 bp | CCCTCCCTTGCCAGCAACTTTATGGATAAAGCAGCTTaGTTTATCCATAGCTTCTTCGTCTTTATTCCTTTC | + |
|
Preference number: 3 (lower is better) Translates to: PSLASNFMDKAA*FIHSFFVFIPF Trigger: GAAAGGAATAAAGACGAAGAAGCTATGGATAAAGCAAGCTGCTTTATCCATAAAGTTGCTGGCAAGGGAGGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR GCA 90 bp | ACTCCCCCAGGGTTTCTGCCTTGCGGCTTGCCTCCTGTTTCTCTGGACCTGGACGGCGTCCGGGGGCTCTaGGAAGCTGGGCAGCGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: TPPGFLPCGLPPVSLDLDGVRGL*EAGQRS Trigger: ACTGCGCTGCCCAGCTTCGCAGAGCCCCCGGACGCC...GTCCAGGTCCAGAGAAACAGGAGGCAAGCCGCAAGGCAGAAACCCTGGGGGAGT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR TCA 90 bp | AAGGAATCCCCTCTCTGTTCAGCTCAGGTGGTGGAGTACGCTTCCTGCCCTGCCGCGGCGGCGGCCCGATaGGCGAGTCGATGGAGAAGG | + |
|
Preference number: 4 (lower is better) Translates to: KESPLCSAQVVEYASCPAAAAAR*ASRWRR Trigger: CCTTCTCCATCGACTCGCTCATCGGGCCGCCGCCGC...GGCAGGGCAGGAAGCGTACTCCACCACCTGAGCTGAACAGAGAGGGGATTCCTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR GCA 90 bp | ACTCCCCCAGGGTTTCTGCCTTGCGGCTTGCCTCCTGTTTCTCTGGACCTGGACCTCCTGCTCGCTGCCTaGTGGGTCTCCTGCTGGGGG | + |
|
Preference number: 4 (lower is better) Translates to: TPPGFLPCGLPPVSLDLDLLLAA*WVSCWG Trigger: CCCCCAGCAGGAGACCCAGCAGGCAGCGAGCAGGAG...GTCCAGGTCCAGAGAAACAGGAGGCAAGCCGCAAGGCAGAAACCCTGGGGGAGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR GCA 90 bp | AAGGAATCCCCTCTCTGTTCAGCTCAGGTGGTGGAGTACGCTTCCTGCCCTGCCCAGGGCCGGGCTCCTTaGTCCATCTGTTGGTGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: KESPLCSAQVVEYASCPAQGRAP*SICWCW Trigger: CCAGCACCAACAGATGGAGCAAGGAGCCCGGCCCTG...GGCAGGGCAGGAAGCGTACTCCACCACCTGAGCTGAACAGAGAGGGGATTCCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR CCA 90 bp | ACAGGACAGACTAGTCCCCAGACTCTCCAAAACCAAGTTGCTTGGGCTGGCTCCGGGGCTCTGCGAAGCTaGGCAGCGCAGTGGTCAGCG | + |
|
Preference number: 4 (lower is better) Translates to: TGQTSPQTLQNQVAWAGSGALRS*AAQWSA Trigger: CGCTGACCACTGCGCTGCCCAGCTTCGCAGAGCCCC...GGAGCCAGCCCAAGCAACTTGGTTTTGGAGAGTCTGGGGACTAGTCTGTCCTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR CCA 90 bp | TGCAAGAACAGACAGGCAGTGGGCCTCTGCCCCAGGCTCTGGCATATAAAAGAGCTGCTCGCTGCCTGCTaGGTCTCCTGCTGGGGGCTC | + |
|
Preference number: 4 (lower is better) Translates to: CKNRQAVGLCPRLWHIKELLAAC*VSCWGL Trigger: GAGCCCCCAGCAGGAGACCCAGCAGGCAGCGAGCAG...CTCTTTTATATGCCAGAGCCTGGGGCAGAGGCCCACTGCCTGTCTGTTCTTGCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| 3UTR CAA 72 bp | GCTCTGGCCACTCCCCCAGGGTTTCTGCCTTGCGGCTaGCCTCCTGTTTCTCTGGACCTGGACAGCAACTCT | + |
|
Preference number: 4 (lower is better) Translates to: ALATPPGFLPCG*PPVSLDLDSNS Trigger: AGAGTTGCTGTCCAGGTCCAGAGAAACAGGAGGCAAGCCGCAAGGCAGAAACCCTGGGGGAGTGGCCAGAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR CCA 90 bp | GACAGCAACTCTGCTGAAGAGGTAACATTTAACCTCCAACTCCTGTGTAGAGCAATCGAGGGCACCGCCTaGCCCAGCCCCGCGCAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: DSNSAEEVTFNLQLLCRAIEGTA*PSPAQK Trigger: CTTCTGCGCGGGGCTGGGCCAGGCGGTGCCCTCGAT...TGCTCTACACAGGAGTTGGAGGTTAAATGTTACCTCTTCAGCAGAGTTGCTGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| 3UTR CAA 72 bp | CCTGAGGTCTCTAGAACAGTCTCAGGCCAAATAGTCTaGTGTCCCGGGAATACGCTGGCCTCTCCCGGAGCA | + |
|
Preference number: 4 (lower is better) Translates to: PEVSRTVSGQIV*CPGNTLASPGA Trigger: TGCTCCGGGAGAGGCCAGCGTATTCCCGGGACACAAGACTATTTGGCCTGAGACTGTTCTAGAGACCTCAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| 3UTR CAA 72 bp | CAAGTTGCTTGGGCTGGCTCCCTCTGCTTAGCACTGTaGCAGCTGTGTGGCAAGCCAAAAACCTGGGCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: QVAWAGSLCLAL*QLCGKPKTWAL Trigger: CAGAGCCCAGGTTTTTGGCTTGCCACACAGCTGCAACAGTGCTAAGCAGAGGGAGCCAGCCCAAGCAACTTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR TCA 90 bp | TATCCCCACCTCAGGAATCCACTTCTGCTCCTGAAGCCCTCCTGGATCAGAATGTCACATTGCCAGCCTTaGTGCGCTTCCACTTGGCCC | + |
|
Preference number: 4 (lower is better) Translates to: YPHLRNPLLLLKPSWIRMSHCQP*CASTWP Trigger: GGGCCAAGTGGAAGCGCATCAAGGCTGGCAATGTGA...CATTCTGATCCAGGAGGGCTTCAGGAGCAGAAGTGGATTCCTGAGGTGGGGATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR GCA 90 bp | TTTGTTCACAGGAAGTGGGGATACAGTAGCCCAATGGGAACAGAAGGTGTGGGAAAAGTCTCAGAGAAGTaGGGAGGCGGGGGCGGCGGA | + |
|
Preference number: 4 (lower is better) Translates to: FVHRKWGYSSPMGTEGVGKVSEK*GGGGGG Trigger: TCCGCCGCCCCCGCCTCCGCACTTCTCTGAGACTTT...TCCCACACCTTCTGTTCCCATTGGGCTACTGTATCCCCACTTCCTGTGAACAAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR GCA 90 bp | CGGCCTACTCCGATCTGTAGCCTCACTAGAGAGTTGCTTGGGAGAAATGAAGTACTTCCTCCTGCTCGCTaGCTGCTGGGTCTCCTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: RPTPICSLTRELLGRNEVLPPAR*LLGLLL Trigger: CAGCAGGAGACCCAGCAGGCAGCGAGCAGGAGGAAG...TACTTCATTTCTCCCAAGCAACTCTCTAGTGAGGCTACAGATCGGAGTAGGCCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR CCA 90 bp | CTTCTCCCAAAGAGAAGACATCAGAAGCAGATGGGTTTGTTCACAGGAAGTGGGAGCTGGGCAGCGCAGTaGTCAGCGCCACCATCGAGG | + |
|
Preference number: 4 (lower is better) Translates to: LLPKRRHQKQMGLFTGSGSWAAQ*SAPPSR Trigger: CCTCGATGGTGGCGCTGACCACTGCGCTGCCCAGCT...CCCACTTCCTGTGAACAAACCCATCTGCTTCTGATGTCTTCTCTTTGGGAGAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR CCA 90 bp | GTTCACAGGAAGTGGGGATACAGTAGCCCAATGGGAACAGAAGGTGTGGGAATACTGAGCTTGAGGGCGTaGGCGATCTGGGAGCGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: VHRKWGYSSPMGTEGVGILSLRA*AIWERS Trigger: AGAGCGCTCCCAGATCGCCCACGCCCTCAAGCTCAG...TATTCCCACACCTTCTGTTCCCATTGGGCTACTGTATCCCCACTTCCTGTGAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR GCA 90 bp | CATCTGACAGTGGCTGCTTTTAGCCTATCTTTCTGTAATGGAAGAGGCTGGTGGGAGCCCTCTTCCTCCTaGTCGCTGCCTGCTGGGTCT | + |
|
Preference number: 4 (lower is better) Translates to: HLTVAAFSLSFCNGRGWWEPSSS*SLPAGS Trigger: AGACCCAGCAGGCAGCGAGCAGGAGGAAGAGGGCTC...CCACCAGCCTCTTCCATTACAGAAAGATAGGCTAAAAGCAGCCACTGTCAGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR GCA 90 bp | CATCTGACAGTGGCTGCTTTTAGCCTATCTTTCTGTAATGGAAGAGGCTGGTGGAGCCCCTGGGCCCCCTaGAGAACTGTCCAGGAAGCT | + |
|
Preference number: 4 (lower is better) Translates to: HLTVAAFSLSFCNGRGWWSPWAP*RTVQEA Trigger: AGCTTCCTGGACAGTTCTGCAGGGGGCCCAGGGGCT...CCACCAGCCTCTTCCATTACAGAAAGATAGGCTAAAAGCAGCCACTGTCAGATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR GCA 90 bp | AAGTTGCAAGAACAGACAGGCAGTGGGCCTCTGCCCCAGGCTCTGGCATATAAATGCTCCATCTGTTGGTaGTGGCTGCGCACAGCAAAC | + |
|
Preference number: 4 (lower is better) Translates to: KLQEQTGSGPLPQALAYKCSICW*WLRTAN Trigger: GTTTGCTGTGCGCAGCCAGCACCAACAGATGGAGCA...TTTATATGCCAGAGCCTGGGGCAGAGGCCCACTGCCTGTCTGTTCTTGCAACTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR GCA 90 bp | GCAGCTTGCTTTATCCATAGCTTCTTCGTCTTTATTCCTTTCCCCCTAATCCACCCGCGCAGAAGGTATTaGTCAGGCGGCCGGCGAACG | + |
|
Preference number: 4 (lower is better) Translates to: AACFIHSFFVFIPFPLIHPRRRY*SGGRRT Trigger: CGTTCGCCGGCCGCCTGAGCAATACCTTCTGCGCGG...GTGGATTAGGGGGAAAGGAATAAAGACGAAGAAGCTATGGATAAAGCAAGCTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR CCA 90 bp | CTCCCTTCAGTGCAAACTGAAGTATGTCTCTTCCTGAAGTGTGCTGCTTCTCCCCCTTGCTCCATCTGTTaGTGCTGGCTGCGCACAGCA | + |
|
Preference number: 4 (lower is better) Translates to: LPSVQTEVCLFLKCAASPPCSIC*CWLRTA Trigger: TGCTGTGCGCAGCCAGCACCAACAGATGGAGCAAGG...GGGAGAAGCAGCACACTTCAGGAAGAGACATACTTCAGTTTGCACTGAAGGGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| 3UTR CAA 72 bp | GCCTGGAAGGCAGGTCAGGAATGTGAGTGTGTGTGCTaGCTCCCCTCCCTTGCCAGCAACTTTATGGATAAA | + |
|
Preference number: 4 (lower is better) Translates to: AWKAGQECECVC*LPSLASNFMDK Trigger: TTTATCCATAAAGTTGCTGGCAAGGGAGGGGAGCAAGCACACACACTCACATTCCTGACCTGCCTTCCAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR CCA 90 bp | CTCCCTTCAGTGCAAACTGAAGTATGTCTCTTCCTGAAGTGTGCTGCTTCTCCCTGGGCACTACAATCTTaGGGTTTCTCACCGGCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: LPSVQTEVCLFLKCAASPWALQS*GFSPAP Trigger: GGGAGCCGGTGAGAAACCCCAAGATTGTAGTGCCCA...GGGAGAAGCAGCACACTTCAGGAAGAGACATACTTCAGTTTGCACTGAAGGGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR CCA 90 bp | TTCAAAGAAACAATTTCCCAGTCCCCTTTTGGGATACAGACAGACAAAGACAAAGACCCCTGTGGCCACTaGTGTCCCCTCCTCAGCGCC | + |
|
Preference number: 4 (lower is better) Translates to: FKETISQSPFGIQTDKDKDPCGH*CPLLSA Trigger: GGCGCTGAGGAGGGGACACCAGTGGCCACAGGGGTC...TTTGTCTTTGTCTGTCTGTATCCCAAAAGGGGACTGGGAAATTGTTTCTTTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| 3UTR CAA 72 bp | GGCCTACTCCGATCTGTAGCCTCACTAGAGAGTTGCTaGGGAGAAATGAAGTACCAAGGACAGAGACCACCT | + |
|
Preference number: 4 (lower is better) Translates to: GLLRSVASLESC*GEMKYQGQRPP Trigger: AGGTGGTCTCTGTCCTTGGTACTTCATTTCTCCCAAGCAACTCTCTAGTGAGGCTACAGATCGGAGTAGGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| 3UTR CAA 72 bp | AGACGGCCTACTCCGATCTGTAGCCTCACTAGAGAGTaGCTTGGGAGAAATGAAGTACCAAGGACAGAGACC | + |
|
Preference number: 4 (lower is better) Translates to: RRPTPICSLTRE*LGRNEVPRTET Trigger: GGTCTCTGTCCTTGGTACTTCATTTCTCCCAAGCAACTCTCTAGTGAGGCTACAGATCGGAGTAGGCCGTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR GCA 90 bp | TTGTTCACAGGAAGTGGGGATACAGTAGCCCAATGGGAACAGAAGGTGTGGGAAAACCAGATCTTCACCTaGACCTCACTGAGCTTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: LFTGSGDTVAQWEQKVWENQIFT*TSLSLR Trigger: CCTCAAGCTCAGTGAGGTGCAGGTGAAGATCTGGTT...TTCCCACACCTTCTGTTCCCATTGGGCTACTGTATCCCCACTTCCTGTGAACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR CCA 90 bp | GACAGCAACTCTGCTGAAGAGGTAACATTTAACCTCCAACTCCTGTGTAGAGCATCCATCTGTTGGTGCTaGCTGCGCACAGCAAACCTG | + |
|
Preference number: 4 (lower is better) Translates to: DSNSAEEVTFNLQLLCRASICWC*LRTANL Trigger: CAGGTTTGCTGTGCGCAGCCAGCACCAACAGATGGA...TGCTCTACACAGGAGTTGGAGGTTAAATGTTACCTCTTCAGCAGAGTTGCTGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| 3UTR CAA 72 bp | CTTCTCCCAAAGAGAAGACATCAGAAGCAGATGGGTTaGTTCACAGGAAGTGGGGATACAGTAGCCCAATGG | + |
|
Preference number: 4 (lower is better) Translates to: LLPKRRHQKQMG*FTGSGDTVAQW Trigger: CCATTGGGCTACTGTATCCCCACTTCCTGTGAACAAACCCATCTGCTTCTGATGTCTTCTCTTTGGGAGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR TCA 90 bp | TTCAAAGAAACAATTTCCCAGTCCCCTTTTGGGATACAGACAGACAAAGACAAAGCACAGCAAACCTGTTaGCGTGCACAGGTATGGGCA | + |
|
Preference number: 4 (lower is better) Translates to: FKETISQSPFGIQTDKDKAQQTC*RAQVWA Trigger: TGCCCATACCTGTGCACGTCAACAGGTTTGCTGTGC...TTTGTCTTTGTCTGTCTGTATCCCAAAAGGGGACTGGGAAATTGTTTCTTTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR GCA 90 bp | ACTTTACACAAAATAAATAAAGAACTATGGCCCCAGGCTGGTATCACCAGGACCGCAAACCTGTTGACGTaGACAGGTATGGGCACTACA | + |
|
Preference number: 4 (lower is better) Translates to: TLHKINKELWPQAGITRTANLLT*TGMGTT Trigger: TGTAGTGCCCATACCTGTGCACGTCAACAGGTTTGC...GGTCCTGGTGATACCAGCCTGGGGCCATAGTTCTTTATTTATTTTGTGTAAAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS GCA 90 bp | CCACCATCGAGGGCACCGCCTGGCCCAGCCCCGCGCAGAAGGTATTaGTCAGGCGGCCGGCGAACGAGGCGAGCGGGGCGAGCGGCGGCA | + |
|
Preference number: 5 (lower is better) Translates to: PPSRAPPGPAPRRRY*SGGRRTRRAGRAAA Trigger: TGCCGCCGCTCGCCCCGCTCGCCTCGTTCGCCGGCCGCCTGAGCAATACCTTCTGCGCGGGGCTGGGCCAGGCGGTGCCCTCGATGGTGG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS GCA 90 bp | GGCGGCGGCGAGCTCCGGGGGCCCGTAGTAGGCGTCCGGGGGCTCTaGGAAGCTGGGCAGCGCAGTGGTCAGCGCCACCATCGAGGGCAC | + |
|
Preference number: 5 (lower is better) Translates to: GGGELRGPVVGVRGL*EAGQRSGQRHHRGH Trigger: GTGCCCTCGATGGTGGCGCTGACCACTGCGCTGCCCAGCTTCGCAGAGCCCCCGGACGCCTACTACGGGCCCCCGGAGCTCGCCGCCGCC 76% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS CCA 90 bp | GCCCGTAGTAGGCGTCCGGGGGCTCTGCGAAGCTGGGCAGCGCAGTaGTCAGCGCCACCATCGAGGGCACCGCCTGGCCCAGCCCCGCGC | + |
|
Preference number: 5 (lower is better) Translates to: ARSRRPGALRSWAAQ*SAPPSRAPPGPAPR Trigger: GCGCGGGGCTGGGCCAGGCGGTGCCCTCGATGGTGGCGCTGACCACTGCGCTGCCCAGCTTCGCAGAGCCCCCGGACGCCTACTACGGGC 76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS CCA 90 bp | CGAGCTCCGGGGGCCCGTAGTAGGCGTCCGGGGGCTCTGCGAAGCTaGGCAGCGCAGTGGTCAGCGCCACCATCGAGGGCACCGCCTGGC | + |
|
Preference number: 5 (lower is better) Translates to: RAPGARSRRPGALRS*AAQWSAPPSRAPPG Trigger: GCCAGGCGGTGCCCTCGATGGTGGCGCTGACCACTGCGCTGCCCAGCTTCGCAGAGCCCCCGGACGCCTACTACGGGCCCCCGGAGCTCG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS CCA 90 bp | AAGCTGGGCAGCGCAGTGGTCAGCGCCACCATCGAGGGCACCGCCTaGCCCAGCCCCGCGCAGAAGGTATTGCTCAGGCGGCCGGCGAAC | + |
|
Preference number: 5 (lower is better) Translates to: KLGSAVVSATIEGTA*PSPAQKVLLRRPAN Trigger: GTTCGCCGGCCGCCTGAGCAATACCTTCTGCGCGGGGCTGGGCCAGGCGGTGCCCTCGATGGTGGCGCTGACCACTGCGCTGCCCAGCTT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR CAA 90 bp | CTGGCCACTCCCCCAGGGTTTCTGCCTTGCGGCTTGCCTCCTGTTTCTCTGGACCTCACATTGCCAGCCTaGATGCGCTTCCACTTGGCC | + |
|
Preference number: 5 (lower is better) Translates to: LATPPGFLPCGLPPVSLDLTLPA*MRFHLA Trigger: GGCCAAGTGGAAGCGCATCAAGGCTGGCAATGTGAG...GTCCAGAGAAACAGGAGGCAAGCCGCAAGGCAGAAACCCTGGGGGAGTGGCCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS GCA 90 bp | TGCTCCATCTGTTGGTGCTGGCTGCGCACAGCAAACCTGTTGACGTaGACAGGTATGGGCACTACAATCTTGGGGTTTCTCACCGGCTCC | + |
|
Preference number: 5 (lower is better) Translates to: CSICWCWLRTANLLT*TGMGTTILGFLTGS Trigger: GGAGCCGGTGAGAAACCCCAAGATTGTAGTGCCCATACCTGTGCACGTCAACAGGTTTGCTGTGCGCAGCCAGCACCAACAGATGGAGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS TCA 90 bp | CTCCTTGCTCCATCTGTTGGTGCTGGCTGCGCACAGCAAACCTGTTaGCGTGCACAGGTATGGGCACTACAATCTTGGGGTTTCTCACCG | + |
|
Preference number: 5 (lower is better) Translates to: LLAPSVGAGCAQQTC*RAQVWALQSWGFSP Trigger: CGGTGAGAAACCCCAAGATTGTAGTGCCCATACCTGTGCACGTCAACAGGTTTGCTGTGCGCAGCCAGCACCAACAGATGGAGCAAGGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR CAA 90 bp | CTCCCTTCAGTGCAAACTGAAGTATGTCTCTTCCTGAAGTGTGCTGCTTCTCCCTCAGGGCCGGGCTCCTaGCTCCATCTGTTGGTGCTG | + |
|
Preference number: 5 (lower is better) Translates to: LPSVQTEVCLFLKCAASPSGPGS*LHLLVL Trigger: CAGCACCAACAGATGGAGCAAGGAGCCCGGCCCTGA...GGGAGAAGCAGCACACTTCAGGAAGAGACATACTTCAGTTTGCACTGAAGGGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR CAA 90 bp | GCAGCTTGCTTTATCCATAGCTTCTTCGTCTTTATTCCTTTCCCCCTAATCCACCCCGCGCAGAAGGTATaGCTCAGGCGGCCGGCGAAC | + |
|
Preference number: 5 (lower is better) Translates to: AACFIHSFFVFIPFPLIHPAQKV*LRRPAN Trigger: GTTCGCCGGCCGCCTGAGCAATACCTTCTGCGCGGG...GTGGATTAGGGGGAAAGGAATAAAGACGAAGAAGCTATGGATAAAGCAAGCTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR CAA 90 bp | AAGTTGCAAGAACAGACAGGCAGTGGGCCTCTGCCCCAGGCTCTGGCATATAAAGAACGACTGCTCACATaGCCAGCCTTGATGCGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: KLQEQTGSGPLPQALAYKERLLT*PALMRF Trigger: GAAGCGCATCAAGGCTGGCAATGTGAGCAGTCGTTC...TTTATATGCCAGAGCCTGGGGCAGAGGCCCACTGCCTGTCTGTTCTTGCAACTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS-3UTR CAA 90 bp | GTTCACAGGAAGTGGGGATACAGTAGCCCAATGGGAACAGAAGGTGTGGGAATACGCACAGCAAACCTGTaGACGTGCACAGGTATGGGC | + |
|
Preference number: 5 (lower is better) Translates to: VHRKWGYSSPMGTEGVGIRTANL*TCTGMG Trigger: GCCCATACCTGTGCACGTCAACAGGTTTGCTGTGCG...TATTCCCACACCTTCTGTTCCCATTGGGCTACTGTATCCCCACTTCCTGTGAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS CAA 90 bp | GCCACCATCGAGGGCACCGCCTGGCCCAGCCCCGCGCAGAAGGTATaGCTCAGGCGGCCGGCGAACGAGGCGAGCGGGGCGAGCGGCGGC | + |
|
Preference number: 6 (lower is better) Translates to: ATIEGTAWPSPAQKV*LRRPANEASGASGG Trigger: GCCGCCGCTCGCCCCGCTCGCCTCGTTCGCCGGCCGCCTGAGCAATACCTTCTGCGCGGGGCTGGGCCAGGCGGTGCCCTCGATGGTGGC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS GCA 72 bp | CGGGCAGCAGCTCCTCAGCGTCCAGCGCTCCGTCAGTaGGCCGGGCCGCGGGCTCCGGGTTGCTTCGCGAGG | + |
|
Preference number: 6 (lower is better) Translates to: RAAAPQRPALRQ*AGPRAPGCFAR Trigger: CCTCGCGAAGCAACCCGGAGCCCGCGGCCCGGCGCACTGACGGAGCGCTGGACGCTGAGGAGCTGCTGCCCG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
||
| CDS CCA 72 bp | AGGCGTCCGGGGGCTCTGCGAAGCTGGGCAGCGCAGTaGTCAGCGCCACCATCGAGGGCACCGCCTGGCCCA | + |
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Preference number: 6 (lower is better) Translates to: RRPGALRSWAAQ*SAPPSRAPPGP Trigger: TGGGCCAGGCGGTGCCCTCGATGGTGGCGCTGACCACTGCGCTGCCCAGCTTCGCAGAGCCCCCGGACGCCT 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| CDS GCA 72 bp | GAGCTCCGGGGGCCCGTAGTAGGCGTCCGGGGGCTCTaGGAAGCTGGGCAGCGCAGTGGTCAGCGCCACCAT | + |
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Preference number: 6 (lower is better) Translates to: ELRGPVVGVRGL*EAGQRSGQRHH Trigger: ATGGTGGCGCTGACCACTGCGCTGCCCAGCTTCGCAGAGCCCCCGGACGCCTACTACGGGCCCCCGGAGCTC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| CDS CCA 72 bp | GGGGCCCGTAGTAGGCGTCCGGGGGCTCTGCGAAGCTaGGCAGCGCAGTGGTCAGCGCCACCATCGAGGGCA | + |
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Preference number: 6 (lower is better) Translates to: GARSRRPGALRS*AAQWSAPPSRA Trigger: TGCCCTCGATGGTGGCGCTGACCACTGCGCTGCCCAGCTTCGCAGAGCCCCCGGACGCCTACTACGGGCCCC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| CDS CCA 72 bp | AGCGCAGTGGTCAGCGCCACCATCGAGGGCACCGCCTaGCCCAGCCCCGCGCAGAAGGTATTGCTCAGGCGG | + |
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Preference number: 6 (lower is better) Translates to: SAVVSATIEGTA*PSPAQKVLLRR Trigger: CCGCCTGAGCAATACCTTCTGCGCGGGGCTGGGCCAGGCGGTGCCCTCGATGGTGGCGCTGACCACTGCGCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| CDS CAA 90 bp | CGCACAGCAAACCTGTTGACGTGCACAGGTATGGGCACTACAATCTaGGGGTTTCTCACCGGCTCCCCAGAACGACTGCTCACATTGCCA | + |
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Preference number: 6 (lower is better) Translates to: RTANLLTCTGMGTTI*GFLTGSPERLLTLP Trigger: TGGCAATGTGAGCAGTCGTTCTGGGGAGCCGGTGAGAAACCCCAAGATTGTAGTGCCCATACCTGTGCACGTCAACAGGTTTGCTGTGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| CDS CAA 90 bp | GCTCCTTGCTCCATCTGTTGGTGCTGGCTGCGCACAGCAAACCTGTaGACGTGCACAGGTATGGGCACTACAATCTTGGGGTTTCTCACC | + |
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Preference number: 6 (lower is better) Translates to: APCSICWCWLRTANL*TCTGMGTTILGFLT Trigger: GGTGAGAAACCCCAAGATTGTAGTGCCCATACCTGTGCACGTCAACAGGTTTGCTGTGCGCAGCCAGCACCAACAGATGGAGCAAGGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| CDS TCA 72 bp | CCATCTGTTGGTGCTGGCTGCGCACAGCAAACCTGTTaGCGTGCACAGGTATGGGCACTACAATCTTGGGGT | + |
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Preference number: 6 (lower is better) Translates to: PSVGAGCAQQTC*RAQVWALQSWG Trigger: ACCCCAAGATTGTAGTGCCCATACCTGTGCACGTCAACAGGTTTGCTGTGCGCAGCCAGCACCAACAGATGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| CDS CAA 72 bp | AACCTGTTGACGTGCACAGGTATGGGCACTACAATCTaGGGGTTTCTCACCGGCTCCCCAGAACGACTGCTC | + |
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Preference number: 6 (lower is better) Translates to: NLLTCTGMGTTI*GFLTGSPERLL Trigger: GAGCAGTCGTTCTGGGGAGCCGGTGAGAAACCCCAAGATTGTAGTGCCCATACCTGTGCACGTCAACAGGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| CDS CAA 72 bp | TCCATCTGTTGGTGCTGGCTGCGCACAGCAAACCTGTaGACGTGCACAGGTATGGGCACTACAATCTTGGGG | + |
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Preference number: 6 (lower is better) Translates to: SICWCWLRTANL*TCTGMGTTILG Trigger: CCCCAAGATTGTAGTGCCCATACCTGTGCACGTCAACAGGTTTGCTGTGCGCAGCCAGCACCAACAGATGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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| CDS GCA 72 bp | TGTTGGTGCTGGCTGCGCACAGCAAACCTGTTGACGTaGACAGGTATGGGCACTACAATCTTGGGGTTTCTC | + |
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Preference number: 6 (lower is better) Translates to: CWCWLRTANLLT*TGMGTTILGFL Trigger: GAGAAACCCCAAGATTGTAGTGCCCATACCTGTGCACGTCAACAGGTTTGCTGTGCGCAGCCAGCACCAACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000088311.6 |
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