Pregenerated sensors for GBP8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034438Ensembl transcript IDs: ENSMUST00000031235.13, ENSMUST00000112718.5
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CCTGGGCTACATGGTCCTCATAGGAGTACAGATTCTATATGCAGATTCTATATGAACTTCTCTGCGGAGTaGAAATGGAAAACAGGCAGC | + |
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Preference number: 2 (lower is better) Translates to: PGLHGPHRSTDSICRFYMNFSAE*KWKTGS Trigger: GCTGCCTGTTTTCCATTTTCACTCCGCAGAGAAGTT...CATATAGAATCTGCATATAGAATCTGTACTCCTATGAGGACCATGTAGCCCAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| 3UTR-3UTR CCA 90 bp | GATATCAGTGACTTTTCCTCTTGCTGTGATGAAATACCCTCACAAAACCAACTTGGCTGGCTTGTTGTATaGCATCCACAGTTGAAGCCA | + |
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Preference number: 2 (lower is better) Translates to: DISDFSSCCDEIPSQNQLGWLVV*HPQLKP Trigger: TGGCTTCAACTGTGGATGCCATACAACAAGCCAGCC...AAGTTGGTTTTGTGAGGGTATTTCATCACAGCAAGAGGAAAAGTCACTGATATC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| 3UTR-3UTR GCA 90 bp | TCAGTGACTTTTCCTCTTGCTGTGATGAAATACCCTCACAAAACCAACTTAATGATGTTTAAACTTCTCTaGGGAGTGAAAATGGAAAAC | + |
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Preference number: 2 (lower is better) Translates to: SVTFPLAVMKYPHKTNLMMFKLL*GVKMEN Trigger: GTTTTCCATTTTCACTCCGCAGAGAAGTTTAAACAT...CATTAAGTTGGTTTTGTGAGGGTATTTCATCACAGCAAGAGGAAAAGTCACTGA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| 3UTR CCA 72 bp | TTCAGTCCACAGGAATGGTGCTGCCCACACTTAGGATaGGTTTCCTACCATATTAACCTGAGAGAATCCCGT | + |
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Preference number: 3 (lower is better) Translates to: FSPQEWCCPHLG*VSYHINLRESR Trigger: ACGGGATTCTCTCAGGTTAATATGGTAGGAAACCCATCCTAAGTGTGGGCAGCACCATTCCTGTGGACTGAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| 3UTR CCA 72 bp | CTTTCATCTTTCTACTGTGTCTTCAGTCCACAGGAATaGTGCTGCCCACACTTAGGATGGGTTTCCTACCAT | + |
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Preference number: 3 (lower is better) Translates to: LSSFYCVFSPQE*CCPHLGWVSYH Trigger: ATGGTAGGAAACCCATCCTAAGTGTGGGCAGCACCATTCCTGTGGACTGAAGACACAGTAGAAAGATGAAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| 3UTR CCA 72 bp | CAAGGCTGGATAATGCATTCTGAGAGAAGTCAAGGCTaGCTTGTTGTATGGCATCCACAGTTGAAGCCACAA | + |
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Preference number: 3 (lower is better) Translates to: QGWIMHSERSQG*LVVWHPQLKPQ Trigger: TTGTGGCTTCAACTGTGGATGCCATACAACAAGCCAGCCTTGACTTCTCTCAGAATGCATTATCCAGCCTTG 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| 3UTR GCA 72 bp | TCATCTTTCTACTGTGTCTTCAGTCCACAGGAATGGTaGTGCCCACACTTAGGATGGGTTTCCTACCATATT | + |
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Preference number: 3 (lower is better) Translates to: SSFYCVFSPQEW*CPHLGWVSYHI Trigger: AATATGGTAGGAAACCCATCCTAAGTGTGGGCAGCACCATTCCTGTGGACTGAAGACACAGTAGAAAGATGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| 3UTR-3UTR CAA 90 bp | TCAGTGACTTTTCCTCTTGCTGTGATGAAATACCCTCACAAAACCAACTTAATGGTATGGCATCCACAGTaGAAGCCACAAGTGGTAGGG | + |
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Preference number: 3 (lower is better) Translates to: SVTFPLAVMKYPHKTNLMVWHPQ*KPQVVG Trigger: CCCTACCACTTGTGGCTTCAACTGTGGATGCCATAC...CATTAAGTTGGTTTTGTGAGGGTATTTCATCACAGCAAGAGGAAAAGTCACTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| 3UTR CCA 72 bp | AGCTCCATGTATCATGATGATACATTCGGTCAAGGCTaGATAATGCATTCTGAGAGAAGTCAAGGCTGGCTT | + |
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Preference number: 3 (lower is better) Translates to: SSMYHDDTFGQG*IMHSERSQGWL Trigger: AAGCCAGCCTTGACTTCTCTCAGAATGCATTATCCAGCCTTGACCGAATGTATCATCATGATACATGGAGCT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| CDS-3UTR GCA 90 bp | TGGATAATGCATTCTGAGAGAAGTCAAGGCTGGCTTGTTGTATGGCATCCACAGCTTGGTGCGCTCCTCTaGAATGGCCTTCTGCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: WIMHSERSQGWLVVWHPQLGALL*NGLLPS Trigger: GCTGGGCAGAAGGCCATTGCAGAGGAGCGCACCAAG...CTGTGGATGCCATACAACAAGCCAGCCTTGACTTCTCTCAGAATGCATTATCCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| CDS-3UTR GCA 90 bp | AGACATGTAGGAGCTGTTCTATGTCTTCTGTGTGGGGCACAGATGCCCTCTAATCTGCCTCCTTCTTGGTaGGCTCCTCTGCAATGGCCT | + |
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Preference number: 4 (lower is better) Translates to: RHVGAVLCLLCGAQMPSNLPPSW*APLQWP Trigger: AGGCCATTGCAGAGGAGCGCACCAAGAAGGAGGCAG...ATTAGAGGGCATCTGTGCCCCACACAGAAGACATAGAACAGCTCCTACATGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| CDS-3UTR GCA 90 bp | GAGATTGCTTTCATCTTTCTACTGTGTCTTCAGTCCACAGGAATGGTGCTGCCCAGGAGGACCAGGGTGTaGTCTGGTTTAGTGGGGTGT | + |
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Preference number: 4 (lower is better) Translates to: EIAFIFLLCLQSTGMVLPRRTRV*SGLVGC Trigger: ACACCCCACTAAACCAGAGCACACCCTGGTCCTCCT...GGGCAGCACCATTCCTGTGGACTGAAGACACAGTAGAAAGATGAAAGCAATCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| CDS-3UTR CCA 90 bp | GCTTGTTGTATGGCATCCACAGTTGAAGCCACAAGTGGTAGGGAGATTGCTTTCGACCAGGGTGTGCTCTaGTTTAGTGGGGTGTGGCAT | + |
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Preference number: 4 (lower is better) Translates to: ACCMASTVEATSGREIAFDQGVL*FSGVWH Trigger: ATGCCACACCCCACTAAACCAGAGCACACCCTGGTC...GAAAGCAATCTCCCTACCACTTGTGGCTTCAACTGTGGATGCCATACAACAAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| CDS-3UTR TCA 90 bp | TGTGGGGCACAGATGCCCTCTAATCAGCACTTTTTATGTTTAAACTTCTCTGCGATGATGGCCTGCGACTaGAGAAAGCTCTGGAAGACT | + |
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Preference number: 4 (lower is better) Translates to: CGAQMPSNQHFLCLNFSAMMACD*RKLWKT Trigger: AGTCTTCCAGAGCTTTCTTCAGTCGCAGGCCATCAT...CGCAGAGAAGTTTAAACATAAAAAGTGCTGATTAGAGGGCATCTGTGCCCCACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| CDS-3UTR GCA 90 bp | GGGAGATTGCTTTCATCTTTCTACTGTGTCTTCAGTCCACAGGAATGGTGCTGCACCGTGATTCTGTCCTaGCAGACGGTTCATCAAATA | + |
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Preference number: 4 (lower is better) Translates to: GRLLSSFYCVFSPQEWCCTVILS*QTVHQI Trigger: TATTTGATGAACCGTCTGGCAGGACAGAATCACGGT...GCAGCACCATTCCTGTGGACTGAAGACACAGTAGAAAGATGAAAGCAATCTCCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| CDS-3UTR CCA 90 bp | TGGATAATGCATTCTGAGAGAAGTCAAGGCTGGCTTGTTGTATGGCATCCACAGCCTTCACCCCTTTCCTaGGAACTTGCCAGTAATCAT | + |
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Preference number: 4 (lower is better) Translates to: WIMHSERSQGWLVVWHPQPSPLS*ELASNH Trigger: ATGATTACTGGCAAGTTCCCAGGAAAGGGGTGAAGG...CTGTGGATGCCATACAACAAGCCAGCCTTGACTTCTCTCAGAATGCATTATCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| 3UTR CAA 72 bp | TGGCATCCACAGTTGAAGCCACAAGTGGTAGGGAGATaGCTTTCATCTTTCTACTGTGTCTTCAGTCCACAG | + |
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Preference number: 4 (lower is better) Translates to: WHPQLKPQVVGR*LSSFYCVFSPQ Trigger: CTGTGGACTGAAGACACAGTAGAAAGATGAAAGCAATCTCCCTACCACTTGTGGCTTCAACTGTGGATGCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| 3UTR CAA 72 bp | AGAAGTCAAGGCTGGCTTGTTGTATGGCATCCACAGTaGAAGCCACAAGTGGTAGGGAGATTGCTTTCATCT | + |
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Preference number: 4 (lower is better) Translates to: RSQGWLVVWHPQ*KPQVVGRLLSS Trigger: AGATGAAAGCAATCTCCCTACCACTTGTGGCTTCAACTGTGGATGCCATACAACAAGCCAGCCTTGACTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| CDS-3UTR GCA 90 bp | ACTTTTCCTCTTGCTGTGATGAAATACCCTCACAAAACCAACTTAATGAATGGTCTGGAAGACTTCTCTTaGCTTCACCCCTTTCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: TFPLAVMKYPHKTNLMNGLEDFS*LHPFPG Trigger: CCCAGGAAAGGGGTGAAGGCAAGAGAAGTCTTCCAG...ACCATTCATTAAGTTGGTTTTGTGAGGGTATTTCATCACAGCAAGAGGAAAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| CDS-3UTR CCA 90 bp | GGGAGATTGCTTTCATCTTTCTACTGTGTCTTCAGTCCACAGGAATGGTGCTGCGACAGATGTTCATTGTaGTTTTCCACAAGACAAATG | + |
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Preference number: 4 (lower is better) Translates to: GRLLSSFYCVFSPQEWCCDRCSL*FSTRQM Trigger: CATTTGTCTTGTGGAAAACCACAATGAACATCTGTC...GCAGCACCATTCCTGTGGACTGAAGACACAGTAGAAAGATGAAAGCAATCTCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| CDS-3UTR CCA 90 bp | ATCAGTGACTTTTCCTCTTGCTGTGATGAAATACCCTCACAAAACCAACTTAATATCTCTATGGCTTCATaGTTCACGGACAGATGTTCA | + |
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Preference number: 4 (lower is better) Translates to: ISDFSSCCDEIPSQNQLNISMAS*FTDRCS Trigger: TGAACATCTGTCCGTGAACCATGAAGCCATAGAGAT...ATTAAGTTGGTTTTGTGAGGGTATTTCATCACAGCAAGAGGAAAAGTCACTGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| CDS-3UTR CCA 90 bp | ATGAATGGTTTGTTGAGCTCCATGTATCATGATGATACATTCGGTCAAGGCTGGAACTCACAAACTCTGTaGAATTCTTTATTCCATCAG | + |
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Preference number: 4 (lower is better) Translates to: MNGLLSSMYHDDTFGQGWNSQTL*NSLFHQ Trigger: CTGATGGAATAAAGAATTCCACAGAGTTTGTGAGTT...CCAGCCTTGACCGAATGTATCATCATGATACATGGAGCTCAACAAACCATTCAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| 3UTR CAA 72 bp | ATGAAATACCCTCACAAAACCAACTTAATGAATGGTTaGTTGAGCTCCATGTATCATGATGATACATTCGGT | + |
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Preference number: 4 (lower is better) Translates to: MKYPHKTNLMNG*LSSMYHDDTFG Trigger: ACCGAATGTATCATCATGATACATGGAGCTCAACAAACCATTCATTAAGTTGGTTTTGTGAGGGTATTTCAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| CDS-3UTR CAA 90 bp | TGTCTGTGCAGACATGTAGGAGCTGTTCTATGTCTTCTGTGTGGGGCACAGATGCACGCTGGGCCAGAGTaGTCACAGCATCATCCACAC | + |
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Preference number: 5 (lower is better) Translates to: CLCRHVGAVLCLLCGAQMHAGPE*SQHHPH Trigger: GTGTGGATGATGCTGTGACAACTCTGGCCCAGCGTG...CATCTGTGCCCCACACAGAAGACATAGAACAGCTCCTACATGTCTGCACAGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| CDS-3UTR CAA 90 bp | GGGAGATTGCTTTCATCTTTCTACTGTGTCTTCAGTCCACAGGAATGGTGCTGCTCAGCTGCCTCCTTCTaGGTGCGCTCCTCTGCAATG | + |
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Preference number: 5 (lower is better) Translates to: GRLLSSFYCVFSPQEWCCSAASF*VRSSAM Trigger: CATTGCAGAGGAGCGCACCAAGAAGGAGGCAGCTGA...GCAGCACCATTCCTGTGGACTGAAGACACAGTAGAAAGATGAAAGCAATCTCCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| CDS-3UTR CAA 90 bp | ACATTCGGTCAAGGCTGGATAATGCATTCTGAGAGAAGTCAAGGCTGGCTTGTTTCTGGAAGACTTCTCTaGCCTTCACCCCTTTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: TFGQGWIMHSERSQGWLVSGRLL*PSPLSW Trigger: CCAGGAAAGGGGTGAAGGCAAGAGAAGTCTTCCAGA...AACAAGCCAGCCTTGACTTCTCTCAGAATGCATTATCCAGCCTTGACCGAATGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| CDS CCA 90 bp | AGCAAAGCCTTTTGTTCCTTCAGCTTCTTCTCCACCATCATGTTATaGTCTTTGATGAGCTGCTCTCTCTCCTGCTCCAGCTTCCTTCTC | + |
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Preference number: 5 (lower is better) Translates to: SKAFCSFSFFSTIML*SLMSCSLSCSSFLL Trigger: GAGAAGGAAGCTGGAGCAGGAGAGAGAGCAGCTCATCAAAGACCATAACATGATGGTGGAGAAGAAGCTGAAGGAACAAAAGGCTTTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031235.13 ENSMUST00000112718.5 |
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| CDS-3UTR CAA 90 bp | AGACATGTAGGAGCTGTTCTATGTCTTCTGTGTGGGGCACAGATGCCCTCTAATACGGACAGATGTTCATaGTGGTTTTCCACAAGACAA | + |
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Preference number: 5 (lower is better) Translates to: RHVGAVLCLLCGAQMPSNTDRCS*WFSTRQ Trigger: TTGTCTTGTGGAAAACCACAATGAACATCTGTCCGT...ATTAGAGGGCATCTGTGCCCCACACAGAAGACATAGAACAGCTCCTACATGTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| CDS-3UTR CAA 90 bp | GAATGGTGCTGCCCACACTTAGGATGGGTTTCCTACCATATTAACCTGAGAGAACAGCTTCCTTCTCAGTaGCTCTATGTTTTCCTTGTT | + |
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Preference number: 5 (lower is better) Translates to: EWCCPHLGWVSYHINLREQLPSQ*LYVFLV Trigger: AACAAGGAAAACATAGAGCAACTGAGAAGGAAGCTG...TTCTCTCAGGTTAATATGGTAGGAAACCCATCCTAAGTGTGGGCAGCACCATTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| CDS-3UTR CAA 90 bp | ACATTCGGTCAAGGCTGGATAATGCATTCTGAGAGAAGTCAAGGCTGGCTTGTTGATGTTATGTTTCAGTaGCTGTATCTCTCCGTCCAT | + |
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Preference number: 5 (lower is better) Translates to: TFGQGWIMHSERSQGWLVDVMFQ*LYLSVH Trigger: ATGGACGGAGAGATACAGCAACTGAAACATAACATC...AACAAGCCAGCCTTGACTTCTCTCAGAATGCATTATCCAGCCTTGACCGAATGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| CDS-3UTR CAA 90 bp | GGTTTGTTGAGCTCCATGTATCATGATGATACATTCGGTCAAGGCTGGATAATGCTTGTTCCTTTTCTCTaGAGCCTCCATATACTCCTG | + |
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Preference number: 5 (lower is better) Translates to: GLLSSMYHDDTFGQGWIMLVPFL*SLHILL Trigger: CAGGAGTATATGGAGGCTCAAGAGAAAAGGAACAAG...CATTATCCAGCCTTGACCGAATGTATCATCATGATACATGGAGCTCAACAAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| CDS-3UTR CAA 90 bp | ATCAGTGACTTTTCCTCTTGCTGTGATGAAATACCCTCACAAAACCAACTTAATCCCTTTCCTGGGAACTaGCCAGTAATCATGCTCAAT | + |
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Preference number: 5 (lower is better) Translates to: ISDFSSCCDEIPSQNQLNPFPGN*PVIMLN Trigger: ATTGAGCATGATTACTGGCAAGTTCCCAGGAAAGGG...ATTAAGTTGGTTTTGTGAGGGTATTTCATCACAGCAAGAGGAAAAGTCACTGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| CDS-3UTR CAA 90 bp | ATATCAGTGACTTTTCCTCTTGCTGTGATGAAATACCCTCACAAAACCAACTTACTCAAGCAAAGCCTTTaGTTCCTTCAGCTTCTTCTC | + |
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Preference number: 5 (lower is better) Translates to: ISVTFPLAVMKYPHKTNLLKQSL*FLQLLL Trigger: GAGAAGAAGCTGAAGGAACAAAAGGCTTTGCTTGAG...TAAGTTGGTTTTGTGAGGGTATTTCATCACAGCAAGAGGAAAAGTCACTGATAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031235.13 |
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| CDS GCA 72 bp | CACAGTGGAGCCCAGAGGGAAACCGTGATTCTGTCCTaGCAGACGGTTCATCAAATAGGACTTCCCTGTACG | + |
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Preference number: 6 (lower is better) Translates to: HSGAQRETVILS*QTVHQIGLPCT Trigger: CGTACAGGGAAGTCCTATTTGATGAACCGTCTGGCAGGACAGAATCACGGTTTCCCTCTGGGCTCCACTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031235.13 ENSMUST00000112718.5 |
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| CDS CAA 90 bp | GCCTTTTGTTCCTTCAGCTTCTTCTCCACCATCATGTTATGGTCTTaGATGAGCTGCTCTCTCTCCTGCTCCAGCTTCCTTCTCAGTTGC | + |
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Preference number: 6 (lower is better) Translates to: AFCSFSFFSTIMLWS*MSCSLSCSSFLLSC Trigger: GCAACTGAGAAGGAAGCTGGAGCAGGAGAGAGAGCAGCTCATCAAAGACCATAACATGATGGTGGAGAAGAAGCTGAAGGAACAAAAGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031235.13 ENSMUST00000112718.5 |
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| CDS CAA 72 bp | TCCTTCAGCTTCTTCTCCACCATCATGTTATGGTCTTaGATGAGCTGCTCTCTCTCCTGCTCCAGCTTCCTT | + |
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Preference number: 6 (lower is better) Translates to: SFSFFSTIMLWS*MSCSLSCSSFL Trigger: AAGGAAGCTGGAGCAGGAGAGAGAGCAGCTCATCAAAGACCATAACATGATGGTGGAGAAGAAGCTGAAGGA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031235.13 ENSMUST00000112718.5 |
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| CDS CCA 72 bp | TTTTGTTCCTTCAGCTTCTTCTCCACCATCATGTTATaGTCTTTGATGAGCTGCTCTCTCTCCTGCTCCAGC | + |
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Preference number: 6 (lower is better) Translates to: FCSFSFFSTIML*SLMSCSLSCSS Trigger: GCTGGAGCAGGAGAGAGAGCAGCTCATCAAAGACCATAACATGATGGTGGAGAAGAAGCTGAAGGAACAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031235.13 ENSMUST00000112718.5 |
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| CDS CAA 90 bp | TTCTCCAGAATCTCTATGGCTTCATGGTTCACGGACAGATGTTCATaGTGGTTTTCCACAAGACAAATGGGAGCCATTTGTGGTTGGGTC | + |
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Preference number: 6 (lower is better) Translates to: FSRISMASWFTDRCS*WFSTRQMGAICGWV Trigger: GACCCAACCACAAATGGCTCCCATTTGTCTTGTGGAAAACCACAATGAACATCTGTCCGTGAACCATGAAGCCATAGAGATTCTGGAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031235.13 ENSMUST00000112718.5 |
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| CDS CCA 72 bp | TCTATGGCTTCATGGTTCACGGACAGATGTTCATTGTaGTTTTCCACAAGACAAATGGGAGCCATTTGTGGT | + |
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Preference number: 6 (lower is better) Translates to: SMASWFTDRCSL*FSTRQMGAICG Trigger: ACCACAAATGGCTCCCATTTGTCTTGTGGAAAACCACAATGAACATCTGTCCGTGAACCATGAAGCCATAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031235.13 ENSMUST00000112718.5 |
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| CDS CAA 72 bp | ATCTCTATGGCTTCATGGTTCACGGACAGATGTTCATaGTGGTTTTCCACAAGACAAATGGGAGCCATTTGT | + |
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Preference number: 6 (lower is better) Translates to: ISMASWFTDRCS*WFSTRQMGAIC Trigger: ACAAATGGCTCCCATTTGTCTTGTGGAAAACCACAATGAACATCTGTCCGTGAACCATGAAGCCATAGAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031235.13 ENSMUST00000112718.5 |
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| CDS TCA 72 bp | AAACTCTGTGGAATTCTTTATTCCATCAGGATTTGGTaGAGACTTTGCTCTGATCAGCTCAGTGAGTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: KLCGILYSIRIW*RLCSDQLSEFC Trigger: ACAGAACTCACTGAGCTGATCAGAGCAAAGTCTTCACCAAATCCTGATGGAATAAAGAATTCCACAGAGTTT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031235.13 ENSMUST00000112718.5 |
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