Pregenerated sensors for GBP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028270Ensembl transcript IDs: ENSMUST00000165774.8, ENSMUST00000169572.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GAATGTTCCAGGTACTCATCAGAAGTGACGGGTTTTCCGTTAACCTCCAGCTCGTCGTCTACCCCACTCTaGTCAGGTGATGACTTTGAC | + |
|
Preference number: 2 (lower is better) Translates to: ECSRYSSEVTGFPLTSSSSSTPL*SGDDFD Trigger: GTCAAAGTCATCACCTGACCAGAGTGGGGTAGACGA...CGAGCTGGAGGTTAACGGAAAACCCGTCACTTCTGATGAGTACCTGGAACATTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169572.2 |
||
| 3UTR-3UTR TCA 90 bp | TGTTGTCACAGTGGGGAGATAAAAGGGAAACCTGGGATGAGATTTAGGTTTGGACCAGTGGTCAGACAGTaGCCCCAAAATGGAGTCGCA | + |
|
Preference number: 2 (lower is better) Translates to: CCHSGEIKGKPGMRFRFGPVVRQ*PQNGVA Trigger: TGCGACTCCATTTTGGGGTCACTGTCTGACCACTGG...TCCAAACCTAAATCTCATCCCAGGTTTCCCTTTTATCTCCCCACTGTGACAACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| 3UTR-3UTR TCA 90 bp | ACATTTGTCTTGAGTAATTTCAAGACATGTTGTCACAGTGGGGAGATAAAAGGGCAGAGGGACTTCCTCTaGCAGTGCCCAGTGGTCAGA | + |
|
Preference number: 2 (lower is better) Translates to: TFVLSNFKTCCHSGEIKGQRDFL*QCPVVR Trigger: TCTGACCACTGGGCACTGTCAGAGGAAGTCCCTCTG...CCCTTTTATCTCCCCACTGTGACAACATGTCTTGAAATTACTCAAGACAAATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| 3UTR-3UTR CCA 90 bp | GCCTGTTCTGTGATTACAGAAGCTATCTGTAGGAAAGAGGAACACTTAAGATTATCTGACAGTGCCCAGTaGTCAGACAGTGACCCCAAA | + |
|
Preference number: 2 (lower is better) Translates to: ACSVITEAICRKEEHLRLSDSAQ*SDSDPK Trigger: TTTGGGGTCACTGTCTGACCACTGGGCACTGTCAGA...TAATCTTAAGTGTTCCTCTTTCCTACAGATAGCTTCTGTAATCACAGAACAGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| 3UTR-3UTR CCA 90 bp | GGGGAGATAAAAGGGAAACCTGGGATGAGATTTAGGTTTGGAATAACAGTAGAATACAGGAGAAACGTATaGCTGGGCATGATGAAGGCC | + |
|
Preference number: 2 (lower is better) Translates to: GEIKGKPGMRFRFGITVEYRRNV*LGMMKA Trigger: GGCCTTCATCATGCCCAGCCATACGTTTCTCCTGTA...TTCTACTGTTATTCCAAACCTAAATCTCATCCCAGGTTTCCCTTTTATCTCCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| 3UTR-3UTR TCA 90 bp | GGGGAGATAAAAGGGAAACCTGGGATGAGATTTAGGTTTGGAATAACAGTAGAAAGTTGTTTCAAAGCCTaGAGATGCTCAGTCAACATA | + |
|
Preference number: 2 (lower is better) Translates to: GEIKGKPGMRFRFGITVESCFKA*RCSVNI Trigger: TATGTTGACTGAGCATCTTCAGGCTTTGAAACAACT...TTCTACTGTTATTCCAAACCTAAATCTCATCCCAGGTTTCCCTTTTATCTCCCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| 3UTR-3UTR TCA 90 bp | TCTTGCAAGACATTTGTCTTGAGTAATTTCAAGACATGTTGTCACAGTGGGGAGGATTTTGAGCTGAGGTaGATTGAGTTTCATAGCAGT | + |
|
Preference number: 2 (lower is better) Translates to: SCKTFVLSNFKTCCHSGEDFELR*IEFHSS Trigger: ACTGCTATGAAACTCAATTCACCTCAGCTCAAAATC...CTCCCCACTGTGACAACATGTCTTGAAATTACTCAAGACAAATGTCTTGCAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| 3UTR-3UTR TCA 90 bp | GGGGAGATAAAAGGGAAACCTGGGATGAGATTTAGGTTTGGAATAACAGTAGAAAAGTCCTCAGAGAAATaGAAGGGAATTCATTTTGCA | + |
|
Preference number: 2 (lower is better) Translates to: GEIKGKPGMRFRFGITVEKSSEK*KGIHFA Trigger: TGCAAAATGAATTCCCTTTCATTTCTCTGAGGACTT...TTCTACTGTTATTCCAAACCTAAATCTCATCCCAGGTTTCCCTTTTATCTCCCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| 3UTR-3UTR CAA 90 bp | CACAGAGGGACTTCCTCTGACAGTGCCCAGTGGTCAGACAGTGACCCCAAAATGTGTGATGGAGAGAGCTaGGCAGAGAGGTTTGGGCCT | + |
|
Preference number: 3 (lower is better) Translates to: HRGTSSDSAQWSDSDPKMCDGES*AERFGP Trigger: AGGCCCAAACCTCTCTGCCAAGCTCTCTCCATCACA...CATTTTGGGGTCACTGTCTGACCACTGGGCACTGTCAGAGGAAGTCCCTCTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| 3UTR CCA 72 bp | TCTGCACACAGAGGGACTTCCTCTGACAGTGCCCAGTaGTCAGACAGTGACCCCAAAATGGAGTCGCATATG | + |
|
Preference number: 3 (lower is better) Translates to: SAHRGTSSDSAQ*SDSDPKMESHM Trigger: CATATGCGACTCCATTTTGGGGTCACTGTCTGACCACTGGGCACTGTCAGAGGAAGTCCCTCTGTGTGCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| 3UTR TCA 72 bp | TTTTTATTAACTTGTGCTCTTGCAAGACATTTGTCTTaGGTAATTTCAAGACATGTTGTCACAGTGGGGAGA | + |
|
Preference number: 3 (lower is better) Translates to: FLLTCALARHLS*VISRHVVTVGR Trigger: TCTCCCCACTGTGACAACATGTCTTGAAATTACTCAAGACAAATGTCTTGCAAGAGCACAAGTTAATAAAAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR GCA 90 bp | TCAGTCAACATAGTGTGTGATGGAGAGAGCTTGGCAGAGAGGTTTGGGCCTTGGAACCAGGGTTTGCCCTaGCTTCTTGGGGTGAGGCAC | + |
|
Preference number: 4 (lower is better) Translates to: SVNIVCDGESLAERFGPWNQGLP*LLGVRH Trigger: GTGCCTCACCCCAAGAAGGCAGGGCAAACCCTGGTT...CCAAGGCCCAAACCTCTCTGCCAAGCTCTCTCCATCACACACTATGTTGACTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR TCA 90 bp | GTCAACATAGTGTGTGATGGAGAGAGCTTGGCAGAGAGGTTTGGGCCTTGGGCCCTAAGTTGCTTCCTCTaGGCAGGCCTGTCAAAGATG | + |
|
Preference number: 4 (lower is better) Translates to: VNIVCDGESLAERFGPWALSCFL*AGLSKM Trigger: CATCTTTGACAGGCCTGCTCAGAGGAAGCAACTTAG...GGCCCAAGGCCCAAACCTCTCTGCCAAGCTCTCTCCATCACACACTATGTTGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR TCA 90 bp | ATTCTGCACACAGAGGGACTTCCTCTGACAGTGCCCAGTGGTCAGACAGTGACCCAGGCCTGTCAAAGATaGAGCACTTCCTCTTTGGAA | + |
|
Preference number: 4 (lower is better) Translates to: ILHTEGLPLTVPSGQTVTQACQR*STSSLE Trigger: TTCCAAAGAGGAAGTGCTTCATCTTTGACAGGCCTG...GGTCACTGTCTGACCACTGGGCACTGTCAGAGGAAGTCCCTCTGTGTGCAGAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR GCA 90 bp | ACAAAGTTAGCGGAATCGTCTACCCCACTCTGGTCAGGTGATGACTTTGACTTGAACCAGGGTTTGCCCTaGCTTCTTGGGGTGAGGCAC | + |
|
Preference number: 4 (lower is better) Translates to: TKLAESSTPLWSGDDFDLNQGLP*LLGVRH Trigger: GTGCCTCACCCCAAGAAGGCAGGGCAAACCCTGGTT...CAAGTCAAAGTCATCACCTGACCAGAGTGGGGTAGACGATTCCGCTAACTTTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169572.2 |
||
| CDS-3UTR TCA 90 bp | ATTCTGCACACAGAGGGACTTCCTCTGACAGTGCCCAGTGGTCAGACAGTGACCTGGTTGATCACTAGTTaGGCCTCAGTGTTCTCAATG | + |
|
Preference number: 4 (lower is better) Translates to: ILHTEGLPLTVPSGQTVTWLITS*ASVFSM Trigger: CATTGAGAACACTGAGGCTCAACTAGTGATCAACCA...GGTCACTGTCTGACCACTGGGCACTGTCAGAGGAAGTCCCTCTGTGTGCAGAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR CCA 90 bp | TCAGTCAACATAGTGTGTGATGGAGAGAGCTTGGCAGAGAGGTTTGGGCCTTGGTCAGGAAGACCTCAATaGCCTCACTCTCAATTGGCC | + |
|
Preference number: 4 (lower is better) Translates to: SVNIVCDGESLAERFGPWSGRPQ*PHSQLA Trigger: GGCCAATTGAGAGTGAGGCCATTGAGGTCTTCCTGA...CCAAGGCCCAAACCTCTCTGCCAAGCTCTCTCCATCACACACTATGTTGACTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR TCA 90 bp | ACAAAGTTAGCGGAATCGTCTACCCCACTCTGGTCAGGTGATGACTTTGACTTGCCTCAGTGTTCTCAATaGGGCACATGGGTTCCGACA | + |
|
Preference number: 4 (lower is better) Translates to: TKLAESSTPLWSGDDFDLPQCSQ*GTWVPT Trigger: TGTCGGAACCCATGTGCCTCATTGAGAACACTGAGG...CAAGTCAAAGTCATCACCTGACCAGAGTGGGGTAGACGATTCCGCTAACTTTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000169572.2 |
||
| CDS-3UTR TCA 90 bp | ATTCTGCACACAGAGGGACTTCCTCTGACAGTGCCCAGTGGTCAGACAGTGACCTTTGGTCTACATCCTTaGAAGAATTCTTCAGGAAGA | + |
|
Preference number: 4 (lower is better) Translates to: ILHTEGLPLTVPSGQTVTFGLHP*KNSSGR Trigger: TCTTCCTGAAGAATTCTTTCAAGGATGTAGACCAAA...GGTCACTGTCTGACCACTGGGCACTGTCAGAGGAAGTCCCTCTGTGTGCAGAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR GCA 90 bp | TGTTGTCACAGTGGGGAGATAAAAGGGAAACCTGGGATGAGATTTAGGTTTGGAGCTGCTGAGGAGGACTaGCAAAGCAAAGATCCAGCA | + |
|
Preference number: 4 (lower is better) Translates to: CCHSGEIKGKPGMRFRFGAAEED*QSKDPA Trigger: TGCTGGATCTTTGCTTTGGCAGTCCTCCTCAGCAGC...TCCAAACCTAAATCTCATCCCAGGTTTCCCTTTTATCTCCCCACTGTGACAACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR GCA 90 bp | GGGGAGATAAAAGGGAAACCTGGGATGAGATTTAGGTTTGGAATAACAGTAGAAGCACAGCACTCTCCATaGAGGGGAGAGACCCATTGC | + |
|
Preference number: 4 (lower is better) Translates to: GEIKGKPGMRFRFGITVEAQHSP*RGETHC Trigger: GCAATGGGTCTCTCCCCTGCATGGAGAGTGCTGTGC...TTCTACTGTTATTCCAAACCTAAATCTCATCCCAGGTTTCCCTTTTATCTCCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR GCA 90 bp | GGGGAGATAAAAGGGAAACCTGGGATGAGATTTAGGTTTGGAATAACAGTAGAACTCTCAATTGGCCTGTaGAGATCCAGGAGCTCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: GEIKGKPGMRFRFGITVELSIGL*RSRSSW Trigger: CCAGGAGCTCCTGGATCTGCACAGGCCAATTGAGAG...TTCTACTGTTATTCCAAACCTAAATCTCATCCCAGGTTTCCCTTTTATCTCCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR CCA 90 bp | GGGGAGATAAAAGGGAAACCTGGGATGAGATTTAGGTTTGGAATAACAGTAGAAGGCCTCACTCTCAATTaGCCTGTGCAGATCCAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: GEIKGKPGMRFRFGITVEGLTLN*PVQIQE Trigger: CTCCTGGATCTGCACAGGCCAATTGAGAGTGAGGCC...TTCTACTGTTATTCCAAACCTAAATCTCATCCCAGGTTTCCCTTTTATCTCCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR CCA 90 bp | CACAGAGGGACTTCCTCTGACAGTGCCCAGTGGTCAGACAGTGACCCCAAAATGCAACAACATCTGCCTTaGAATCAAAGTAGTTTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: HRGTSSDSAQWSDSDPKMQQHLP*NQSSFS Trigger: TGAAAAACTACTTTGATTCCAAGGCAGATGTTGTTG...CATTTTGGGGTCACTGTCTGACCACTGGGCACTGTCAGAGGAAGTCCCTCTGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR CCA 90 bp | TGTTGTCACAGTGGGGAGATAAAAGGGAAACCTGGGATGAGATTTAGGTTTGGACCCTTCCCAGGAGCCTaGTTATACTTTTTCTCTAGC | + |
|
Preference number: 4 (lower is better) Translates to: CCHSGEIKGKPGMRFRFGPFPGA*LYFFSS Trigger: GCTAGAGAAAAAGTATAACCAGGCTCCTGGGAAGGG...TCCAAACCTAAATCTCATCCCAGGTTTCCCTTTTATCTCCCCACTGTGACAACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR TCA 90 bp | GCCTGTTCTGTGATTACAGAAGCTATCTGTAGGAAAGAGGAACACTTAAGATTACCTCAGTGTTCTCAATaGGGCACATGGGTTCCGACA | + |
|
Preference number: 4 (lower is better) Translates to: ACSVITEAICRKEEHLRLPQCSQ*GTWVPT Trigger: TGTCGGAACCCATGTGCCTCATTGAGAACACTGAGG...TAATCTTAAGTGTTCCTCTTTCCTACAGATAGCTTCTGTAATCACAGAACAGGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR TCA 90 bp | ACATTTGTCTTGAGTAATTTCAAGACATGTTGTCACAGTGGGGAGATAAAAGGGCCTTTGCTGCCTCTGTaGGTGACTGATCCGTCTGTA | + |
|
Preference number: 4 (lower is better) Translates to: TFVLSNFKTCCHSGEIKGPLLPL*VTDPSV Trigger: TACAGACGGATCAGTCACTCACAGAGGCAGCAAAGG...CCCTTTTATCTCCCCACTGTGACAACATGTCTTGAAATTACTCAAGACAAATGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR GCA 90 bp | TGTTGTCACAGTGGGGAGATAAAAGGGAAACCTGGGATGAGATTTAGGTTTGGAAGCTCGAACTCCTTCTaGTTCTTTTCTAACTCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: CCHSGEIKGKPGMRFRFGSSNSF*FFSNSL Trigger: CAGAGAGTTAGAAAAGAAGCAGAAGGAGTTCGAGCT...TCCAAACCTAAATCTCATCCCAGGTTTCCCTTTTATCTCCCCACTGTGACAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR GCA 90 bp | GGGGAGATAAAAGGGAAACCTGGGATGAGATTTAGGTTTGGAATAACAGTAGAACTCTTTTCCTTCTGCTaGATCATCAGCTCGAACTCC | + |
|
Preference number: 4 (lower is better) Translates to: GEIKGKPGMRFRFGITVELFSFC*IISSNS Trigger: GGAGTTCGAGCTGATGATGCAGCAGAAGGAAAAGAG...TTCTACTGTTATTCCAAACCTAAATCTCATCCCAGGTTTCCCTTTTATCTCCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR CCA 90 bp | GCCTGTTCTGTGATTACAGAAGCTATCTGTAGGAAAGAGGAACACTTAAGATTATCGTCTACCCCACTCTaGTCAGGTGATGACTTTGAC | + |
|
Preference number: 4 (lower is better) Translates to: ACSVITEAICRKEEHLRLSSTPL*SGDDFD Trigger: GTCAAAGTCATCACCTGACCAGAGTGGGGTAGACGA...TAATCTTAAGTGTTCCTCTTTCCTACAGATAGCTTCTGTAATCACAGAACAGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR TCA 90 bp | TGTTGTCACAGTGGGGAGATAAAAGGGAAACCTGGGATGAGATTTAGGTTTGGATCAAGATGTATGAGGTaGATTCTGCAACTTGTTCTA | + |
|
Preference number: 4 (lower is better) Translates to: CCHSGEIKGKPGMRFRFGSRCMR*ILQLVL Trigger: TAGAACAAGTTGCAGAATTCACCTCATACATCTTGA...TCCAAACCTAAATCTCATCCCAGGTTTCCCTTTTATCTCCCCACTGTGACAACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR TCA 90 bp | TGTTCTGTGATTACAGAAGCTATCTGTAGGAAAGAGGAACACTTAAGATTATACGCCTCTGTGAGTGACTaGTCCGTCTGTAGAAGTGTT | + |
|
Preference number: 4 (lower is better) Translates to: CSVITEAICRKEEHLRLYASVSD*SVCRSV Trigger: AACACTTCTACAGACGGATCAGTCACTCACAGAGGC...GTATAATCTTAAGTGTTCCTCTTTCCTACAGATAGCTTCTGTAATCACAGAACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR TCA 90 bp | AAAGAATTTCCTGATGCACAGTCGCGGCTCATTAAAGCTTTTAGTTTTCTTATCTGGTTGATCACTAGTTaGGCCTCAGTGTTCTCAATG | + |
|
Preference number: 4 (lower is better) Translates to: KEFPDAQSRLIKAFSFLIWLITS*ASVFSM Trigger: CATTGAGAACACTGAGGCTCAACTAGTGATCAACCA...GATAAGAAAACTAAAAGCTTTAATGAGCCGCGACTGTGCATCAGGAAATTCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169572.2 |
||
| CDS-3UTR GCA 90 bp | ACATTTGTCTTGAGTAATTTCAAGACATGTTGTCACAGTGGGGAGATAAAAGGGCCAGACGATTTGTTTTaGTTCAGGGTATCAATCTCT | + |
|
Preference number: 4 (lower is better) Translates to: TFVLSNFKTCCHSGEIKGPDDLF*FRVSIS Trigger: AGAGATTGATACCCTGAAGCAAAACAAATCGTCTGG...CCCTTTTATCTCCCCACTGTGACAACATGTCTTGAAATTACTCAAGACAAATGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR GCA 90 bp | GGGGAGATAAAAGGGAAACCTGGGATGAGATTTAGGTTTGGAATAACAGTAGAATGTTTCAACAACATCTaGCTTGGAATCAAAGTAGTT | + |
|
Preference number: 4 (lower is better) Translates to: GEIKGKPGMRFRFGITVECFNNI*LGIKVV Trigger: AACTACTTTGATTCCAAGGCAGATGTTGTTGAAACA...TTCTACTGTTATTCCAAACCTAAATCTCATCCCAGGTTTCCCTTTTATCTCCCC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR CAA 90 bp | GAATGTTCCAGGTACTCATCAGAAGTGACGGGTTTTCCGTTAACCTCCAGCTCGAAGCAGAACCAGGGTTaGCCCTGCCTTCTTGGGGTG | + |
|
Preference number: 5 (lower is better) Translates to: ECSRYSSEVTGFPLTSSSKQNQG*PCLLGV Trigger: CACCCCAAGAAGGCAGGGCAAACCCTGGTTCTGCTT...CGAGCTGGAGGTTAACGGAAAACCCGTCACTTCTGATGAGTACCTGGAACATTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000169572.2 |
||
| CDS TCA 90 bp | CTTCAGCCTTCGTACGTTCCTCTTCTACCTCCTTTGCTGCCTCTGTaGGTGACTGATCCGTCTGTAGAAGTGTTTCAACAACATCTGCCT | + |
|
Preference number: 5 (lower is better) Translates to: LQPSYVPLLPPLLPL*VTDPSVEVFQQHLP Trigger: AGGCAGATGTTGTTGAAACACTTCTACAGACGGATCAGTCACTCACAGAGGCAGCAAAGGAGGTAGAAGAGGAACGTACGAAGGCTGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR CAA 90 bp | CACAGTGGGGAGATAAAAGGGAAACCTGGGATGAGATTTAGGTTTGGAATAACATGGCCTCACTCTCAATaGGCCTGTGCAGATCCAGGA | + |
|
Preference number: 5 (lower is better) Translates to: HSGEIKGKPGMRFRFGITWPHSQ*ACADPG Trigger: TCCTGGATCTGCACAGGCCAATTGAGAGTGAGGCCA...TGTTATTCCAAACCTAAATCTCATCCCAGGTTTCCCTTTTATCTCCCCACTGTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS TCA 90 bp | TTCGTACGTTCCTCTTCTACCTCCTTTGCTGCCTCTGTGAGTGACTaGTCCGTCTGTAGAAGTGTTTCAACAACATCTGCCTTGGAATCA | + |
|
Preference number: 5 (lower is better) Translates to: FVRSSSTSFAASVSD*SVCRSVSTTSALES Trigger: TGATTCCAAGGCAGATGTTGTTGAAACACTTCTACAGACGGATCAGTCACTCACAGAGGCAGCAAAGGAGGTAGAAGAGGAACGTACGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR CAA 90 bp | ACATTTGTCTTGAGTAATTTCAAGACATGTTGTCACAGTGGGGAGATAAAAGGGAAGCAGAACCAGGGTTaGCCCTGCCTTCTTGGGGTG | + |
|
Preference number: 5 (lower is better) Translates to: TFVLSNFKTCCHSGEIKGKQNQG*PCLLGV Trigger: CACCCCAAGAAGGCAGGGCAAACCCTGGTTCTGCTT...CCCTTTTATCTCCCCACTGTGACAACATGTCTTGAAATTACTCAAGACAAATGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR CAA 90 bp | GGGGAGATAAAAGGGAAACCTGGGATGAGATTTAGGTTTGGAATAACAGTAGAACTCCAGTTTGCTAAGTaGCTTCCTCTGAGCAGGCCT | + |
|
Preference number: 5 (lower is better) Translates to: GEIKGKPGMRFRFGITVELQFAK*LPLSRP Trigger: AGGCCTGCTCAGAGGAAGCAACTTAGCAAACTGGAG...TTCTACTGTTATTCCAAACCTAAATCTCATCCCAGGTTTCCCTTTTATCTCCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS TCA 90 bp | GATGCCACCACACAGAGTCTTGACAGAAGAGTAGCTCAAGATGTATaGGGTGAATTCTGCAACTTGTTCTACAAATTCACCACACAGCTC | + |
|
Preference number: 5 (lower is better) Translates to: DATTQSLDRRVAQDV*GEFCNLFYKFTTQL Trigger: GAGCTGTGTGGTGAATTTGTAGAACAAGTTGCAGAATTCACCTCATACATCTTGAGCTACTCTTCTGTCAAGACTCTGTGTGGTGGCATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR CAA 90 bp | TGTTGTCACAGTGGGGAGATAAAAGGGAAACCTGGGATGAGATTTAGGTTTGGACCCAGACGATTTGTTTaGCTTCAGGGTATCAATCTC | + |
|
Preference number: 5 (lower is better) Translates to: CCHSGEIKGKPGMRFRFGPRRFV*LQGINL Trigger: GAGATTGATACCCTGAAGCAAAACAAATCGTCTGGG...TCCAAACCTAAATCTCATCCCAGGTTTCCCTTTTATCTCCCCACTGTGACAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR CAA 90 bp | TCTTGCAAGACATTTGTCTTGAGTAATTTCAAGACATGTTGTCACAGTGGGGAGCAGCAGTCATTCTGGTaGTCACCCTTCTCAACATCT | + |
|
Preference number: 5 (lower is better) Translates to: SCKTFVLSNFKTCCHSGEQQSFW*SPFSTS Trigger: AGATGTTGAGAAGGGTGACAACCAGAATGACTGCTG...CTCCCCACTGTGACAACATGTCTTGAAATTACTCAAGACAAATGTCTTGCAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR CAA 90 bp | TGTTGTCACAGTGGGGAGATAAAAGGGAAACCTGGGATGAGATTTAGGTTTGGAGGTGAATTCTGCAACTaGTTCTACAAATTCACCACA | + |
|
Preference number: 5 (lower is better) Translates to: CCHSGEIKGKPGMRFRFGGEFCN*FYKFTT Trigger: TGTGGTGAATTTGTAGAACAAGTTGCAGAATTCACC...TCCAAACCTAAATCTCATCCCAGGTTTCCCTTTTATCTCCCCACTGTGACAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR CAA 90 bp | TCTTGCAAGACATTTGTCTTGAGTAATTTCAAGACATGTTGTCACAGTGGGGAGTTTCTAACTCTCTGTTaGCAGCTTCAGCAGCTTCAG | + |
|
Preference number: 5 (lower is better) Translates to: SCKTFVLSNFKTCCHSGEFLTLC*QLQQLQ Trigger: CTGAAGCTGCTGAAGCTGCAAACAGAGAGTTAGAAA...CTCCCCACTGTGACAACATGTCTTGAAATTACTCAAGACAAATGTCTTGCAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR CAA 90 bp | TGTTGTCACAGTGGGGAGATAAAAGGGAAACCTGGGATGAGATTTAGGTTTGGATCTCGAATAAGTTTTTaGCTCTCATTCTCGAATCCT | + |
|
Preference number: 5 (lower is better) Translates to: CCHSGEIKGKPGMRFRFGSRISF*LSFSNP Trigger: AGGATTCGAGAATGAGAGCAAAAAACTTATTCGAGA...TCCAAACCTAAATCTCATCCCAGGTTTCCCTTTTATCTCCCCACTGTGACAACA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS-3UTR CAA 90 bp | TGTTCTGTGATTACAGAAGCTATCTGTAGGAAAGAGGAACACTTAAGATTATACCACTTCCCAGACGATTaGTTTTGCTTCAGGGTATCA | + |
|
Preference number: 5 (lower is better) Translates to: CSVITEAICRKEEHLRLYHFPDD*FCFRVS Trigger: TGATACCCTGAAGCAAAACAAATCGTCTGGGAAGTG...GTATAATCTTAAGTGTTCCTCTTTCCTACAGATAGCTTCTGTAATCACAGAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS CAA 72 bp | CAGCTCCTCCTCCCGCAGAGTCTCCAGTTTGCTAAGTaGCTTCCTCTGAGCAGGCCTGTCAAAGATGAAGCA | + |
|
Preference number: 6 (lower is better) Translates to: QLLLPQSLQFAK*LPLSRPVKDEA Trigger: TGCTTCATCTTTGACAGGCCTGCTCAGAGGAAGCAACTTAGCAAACTGGAGACTCTGCGGGAGGAGGAGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS TCA 72 bp | TCCCGCAGAGTCTCCAGTTTGCTAAGTTGCTTCCTCTaGGCAGGCCTGTCAAAGATGAAGCACTTCCTCTTT | + |
|
Preference number: 6 (lower is better) Translates to: SRRVSSLLSCFL*AGLSKMKHFLF Trigger: AAAGAGGAAGTGCTTCATCTTTGACAGGCCTGCTCAGAGGAAGCAACTTAGCAAACTGGAGACTCTGCGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS GCA 72 bp | TGCCTTGGAATCAAAGTAGTTTTTCAGCATCGCTTCTaGCTGGAGCCCCTTCCCAGGAGCCTGGTTATACTT | + |
|
Preference number: 6 (lower is better) Translates to: CLGIKVVFQHRF*LEPLPRSLVIL Trigger: AAGTATAACCAGGCTCCTGGGAAGGGGCTCCAGGCAGAAGCGATGCTGAAAAACTACTTTGATTCCAAGGCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS TCA 72 bp | TCCTCTTCTACCTCCTTTGCTGCCTCTGTGAGTGACTaGTCCGTCTGTAGAAGTGTTTCAACAACATCTGCC | + |
|
Preference number: 6 (lower is better) Translates to: SSSTSFAASVSD*SVCRSVSTTSA Trigger: GGCAGATGTTGTTGAAACACTTCTACAGACGGATCAGTCACTCACAGAGGCAGCAAAGGAGGTAGAAGAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS GCA 72 bp | TTTTCCTTCTGCTGCATCATCAGCTCGAACTCCTTCTaGTTCTTTTCTAACTCTCTGTTTGCAGCTTCAGCA | + |
|
Preference number: 6 (lower is better) Translates to: FSFCCIISSNSF*FFSNSLFAASA Trigger: TGCTGAAGCTGCAAACAGAGAGTTAGAAAAGAAGCAGAAGGAGTTCGAGCTGATGATGCAGCAGAAGGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||
| CDS TCA 72 bp | ACACAGAGTCTTGACAGAAGAGTAGCTCAAGATGTATaGGGTGAATTCTGCAACTTGTTCTACAAATTCACC | + |
|
Preference number: 6 (lower is better) Translates to: TQSLDRRVAQDV*GEFCNLFYKFT Trigger: GGTGAATTTGTAGAACAAGTTGCAGAATTCACCTCATACATCTTGAGCTACTCTTCTGTCAAGACTCTGTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000165774.8 |
||