Pregenerated sensors for GBP11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000092021Ensembl transcript IDs: ENSMUST00000100960.11, ENSMUST00000171587.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCTGTGTCTTCAGTCCACAAGAACAGTGCTGCCCACCCACAGAATaGGTTCCCTACCATATTAACCTGAGACAATCCTGCACAACCTAT | + |
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Preference number: 1 (lower is better) Translates to: LCVFSPQEQCCPPTE*VPYHINLRQSCTTY Trigger: ATAGGTTGTGCAGGATTGTCTCAGGTTAATATGGTAGGGAACCCATTCTGTGGGTGGGCAGCACTGTTCTTGTGGACTGAAGACACAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| 3UTR GCA 90 bp | CGATTTGTTTTCAACATTCTCTGTGTCTTCAGTCCACAAGAACAGTaGTGCCCACCCACAGAATGGGTTCCCTACCATATTAACCTGAGA | + |
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Preference number: 1 (lower is better) Translates to: RFVFNILCVFSPQEQ*CPPTEWVPYHINLR Trigger: TCTCAGGTTAATATGGTAGGGAACCCATTCTGTGGGTGGGCAGCACTGTTCTTGTGGACTGAAGACACAGAGAATGTTGAAAACAAATCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| 3UTR GCA 90 bp | TTTGTTTTCAACATTCTCTGTGTCTTCAGTCCACAAGAACAGTGCTaGCCACCCACAGAATGGGTTCCCTACCATATTAACCTGAGACAA | + |
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Preference number: 1 (lower is better) Translates to: FVFNILCVFSPQEQC*PPTEWVPYHINLRQ Trigger: TTGTCTCAGGTTAATATGGTAGGGAACCCATTCTGTGGGTGGGCAGCACTGTTCTTGTGGACTGAAGACACAGAGAATGTTGAAAACAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| 3UTR-3UTR TCA 90 bp | AAGCTACAAGTGGTAGGGCGATTTGTTTTCAACATTCTCTGTGTCTTCAGTCCACAACCTATCCTGGGCTaGATGATCCTCACAAGAATA | + |
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Preference number: 2 (lower is better) Translates to: KLQVVGRFVFNILCVFSPQPILG*MILTRI Trigger: TATTCTTGTGAGGATCATTCAGCCCAGGATAGGTTG...TGGACTGAAGACACAGAGAATGTTGAAAACAAATCGCCCTACCACTTGTAGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| 3UTR-3UTR CCA 90 bp | ACCAACTTAAGAAAGGGTTTGTTGTGGTCCATGAATCATGATGATACATTCTGTGATTTTCAGTTAAATTaGCCAGCAGTGATCGCATGT | + |
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Preference number: 2 (lower is better) Translates to: TNLRKGLLWSMNHDDTFCDFQLN*PAVIAC Trigger: ACATGCGATCACTGCTGGCCAATTTAACTGAAAATC...ACAGAATGTATCATCATGATTCATGGACCACAACAAACCCTTTCTTAAGTTGGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| 3UTR GCA 72 bp | AACATTCTCTGTGTCTTCAGTCCACAAGAACAGTGCTaGCCACCCACAGAATGGGTTCCCTACCATATTAAC | + |
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Preference number: 3 (lower is better) Translates to: NILCVFSPQEQC*PPTEWVPYHIN Trigger: GTTAATATGGTAGGGAACCCATTCTGTGGGTGGGCAGCACTGTTCTTGTGGACTGAAGACACAGAGAATGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| 3UTR GCA 72 bp | TTCAACATTCTCTGTGTCTTCAGTCCACAAGAACAGTaGTGCCCACCCACAGAATGGGTTCCCTACCATATT | + |
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Preference number: 3 (lower is better) Translates to: FNILCVFSPQEQ*CPPTEWVPYHI Trigger: AATATGGTAGGGAACCCATTCTGTGGGTGGGCAGCACTGTTCTTGTGGACTGAAGACACAGAGAATGTTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| 3UTR GCA 72 bp | TTTCAAAATGTGTTCTCTAAAGGCAAGCATTGTCTGTaGAGACACGTAGGAGCTGTTCTATGTCTTCTGTGT | + |
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Preference number: 3 (lower is better) Translates to: FQNVFSKGKHCL*RHVGAVLCLLC Trigger: ACACAGAAGACATAGAACAGCTCCTACGTGTCTGCACAGACAATGCTTGCCTTTAGAGAACACATTTTGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| 3UTR CCA 72 bp | TACCCTCACAAAACCAACTTAAGAAAGGGTTTGTTGTaGTCCATGAATCATGATGATACATTCTGTCAAGGT | + |
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Preference number: 3 (lower is better) Translates to: YPHKTNLRKGLL*SMNHDDTFCQG Trigger: ACCTTGACAGAATGTATCATCATGATTCATGGACCACAACAAACCCTTTCTTAAGTTGGTTTTGTGAGGGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR CCA 90 bp | AAGCATTGTCTGTGCAGACACGTAGGAGCTGTTCTATGTCTTCTGTGTGGGGCAGACCAGGGTGTGCTCTaGCTTGGTGGGGTGTGGCAC | + |
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Preference number: 4 (lower is better) Translates to: KHCLCRHVGAVLCLLCGADQGVL*LGGVWH Trigger: GTGCCACACCCCACCAAGCCAGAGCACACCCTGGTC...TGCCCCACACAGAAGACATAGAACAGCTCCTACGTGTCTGCACAGACAATGCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR CCA 90 bp | GAACAGTGCTGCCCACCCACAGAATGGGTTCCCTACCATATTAACCTGAGACAATGTGCTCTGGCTTGGTaGGGTGTGGCACGCACCACA | + |
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Preference number: 4 (lower is better) Translates to: EQCCPPTEWVPYHINLRQCALAW*GVARTT Trigger: TGTGGTGCGTGCCACACCCCACCAAGCCAGAGCACA...TTGTCTCAGGTTAATATGGTAGGGAACCCATTCTGTGGGTGGGCAGCACTGTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR CCA 90 bp | CTGAGACAATCCTGCACAACCTATCCTGGGCTGAATGATCCTCACAAGAATACAGGGTGTGCTCTGGCTTaGTGGGGTGTGGCACGCACC | + |
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Preference number: 4 (lower is better) Translates to: LRQSCTTYPGLNDPHKNTGCALA*WGVART Trigger: GGTGCGTGCCACACCCCACCAAGCCAGAGCACACCC...TGTATTCTTGTGAGGATCATTCAGCCCAGGATAGGTTGTGCAGGATTGTCTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR CCA 90 bp | TGCAGACACGTAGGAGCTGTTCTATGTCTTCTGTGTGGGGCACAGATGCCCTCTCAGCTGCCTCCTTGTTaGTGCACTTCTCTGCAATGG | + |
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Preference number: 4 (lower is better) Translates to: CRHVGAVLCLLCGAQMPSQLPPC*CTSLQW Trigger: CCATTGCAGAGAAGTGCACCAACAAGGAGGCAGCTG...AGAGGGCATCTGTGCCCCACACAGAAGACATAGAACAGCTCCTACGTGTCTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR CCA 90 bp | GGCAAGCATTGTCTGTGCAGACACGTAGGAGCTGTTCTATGTCTTCTGTGTGGGCCTTCACCCCTTTCCTaGGAACCTGCTAGTAGTCAT | + |
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Preference number: 4 (lower is better) Translates to: GKHCLCRHVGAVLCLLCGPSPLS*EPASSH Trigger: ATGACTACTAGCAGGTTCCCAGGAAAGGGGTGAAGG...CCCACACAGAAGACATAGAACAGCTCCTACGTGTCTGCACAGACAATGCTTGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR TCA 90 bp | AAGCATTGTCTGTGCAGACACGTAGGAGCTGTTCTATGTCTTCTGTGTGGGGCACCAGGGAATCATGGCTaGTGGTGTTCATGCTGTTGT | + |
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Preference number: 4 (lower is better) Translates to: KHCLCRHVGAVLCLLCGAPGNHG*WCSCCC Trigger: ACAACAGCATGAACACCATCAGCCATGATTCCCTGG...TGCCCCACACAGAAGACATAGAACAGCTCCTACGTGTCTGCACAGACAATGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR GCA 90 bp | GAACAGTGCTGCCCACCCACAGAATGGGTTCCCTACCATATTAACCTGAGACAAGTTGTCACAGCATCATaGAGACAAGGCACTGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: EQCCPPTEWVPYHINLRQVVTAS*RQGTAP Trigger: TGGAGCAGTGCCTTGTCTGCATGATGCTGTGACAAC...TTGTCTCAGGTTAATATGGTAGGGAACCCATTCTGTGGGTGGGCAGCACTGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR GCA 90 bp | GAACAGTGCTGCCCACCCACAGAATGGGTTCCCTACCATATTAACCTGAGACAAAGCTGCTCTCTCTCCTaGATCAGCTTCCTTCTCAGT | + |
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Preference number: 4 (lower is better) Translates to: EQCCPPTEWVPYHINLRQSCSLS*ISFLLS Trigger: ACTGAGAAGGAAGCTGATGCAGGAGAGAGAGCAGCT...TTGTCTCAGGTTAATATGGTAGGGAACCCATTCTGTGGGTGGGCAGCACTGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR CCA 90 bp | TGCAGACACGTAGGAGCTGTTCTATGTCTTCTGTGTGGGGCACAGATGCCCTCTATTCCCTGGCCAAATTaGATGCTTGCATTCTGGGAT | + |
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Preference number: 4 (lower is better) Translates to: CRHVGAVLCLLCGAQMPSIPWPN*MLAFWD Trigger: ATCCCAGAATGCAAGCATCCAATTTGGCCAGGGAAT...AGAGGGCATCTGTGCCCCACACAGAAGACATAGAACAGCTCCTACGTGTCTGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR TCA 90 bp | GGCAAGCATTGTCTGTGCAGACACGTAGGAGCTGTTCTATGTCTTCTGTGTGGGTTGGAAAGAAACGTCTaGTGCATTCCCTGGCCAAAT | + |
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Preference number: 4 (lower is better) Translates to: GKHCLCRHVGAVLCLLCGLERNV*CIPWPN Trigger: ATTTGGCCAGGGAATGCATCAGACGTTTCTTTCCAA...CCCACACAGAAGACATAGAACAGCTCCTACGTGTCTGCACAGACAATGCTTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR TCA 90 bp | GGCAAGCATTGTCTGTGCAGACACGTAGGAGCTGTTCTATGTCTTCTGTGTGGGGCCTTTGTTCTTTCCTaGAACATAGGATCCAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: GKHCLCRHVGAVLCLLCGAFVLS*NIGSSW Trigger: CCAACTGGATCCTATGTTTCAGGAAAGAACAAAGGC...CCCACACAGAAGACATAGAACAGCTCCTACGTGTCTGCACAGACAATGCTTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR GCA 90 bp | CTGAGACAATCCTGCACAACCTATCCTGGGCTGAATGATCCTCACAAGAATACAAGGGCTGTGTCTGCCTaGAGGATGGAACTCTCAATG | + |
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Preference number: 4 (lower is better) Translates to: LRQSCTTYPGLNDPHKNTRAVSA*RMELSM Trigger: CATTGAGAGTTCCATCCTGCAGGCAGACACAGCCCT...TGTATTCTTGTGAGGATCATTCAGCCCAGGATAGGTTGTGCAGGATTGTCTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR GCA 90 bp | TGCAGACACGTAGGAGCTGTTCTATGTCTTCTGTGTGGGGCACAGATGCCCTCTTCCATATACTTCTGCTaGTCCTTCTGCTTCTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: CRHVGAVLCLLCGAQMPSSIYFC*SFCFCL Trigger: AAGACAGAAGCAGAAGGAGCAGCAGAAGTATATGGA...AGAGGGCATCTGTGCCCCACACAGAAGACATAGAACAGCTCCTACGTGTCTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR CCA 90 bp | GGCAAGCATTGTCTGTGCAGACACGTAGGAGCTGTTCTATGTCTTCTGTGTGGGTCTGGGATTGTTATCTaGGATCAGCTTCAGGGCATT | + |
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Preference number: 4 (lower is better) Translates to: GKHCLCRHVGAVLCLLCGSGIVI*DQLQGI Trigger: AATGCCCTGAAGCTGATCCCAGATAACAATCCCAGA...CCCACACAGAAGACATAGAACAGCTCCTACGTGTCTGCACAGACAATGCTTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR CCA 90 bp | TGCAGACACGTAGGAGCTGTTCTATGTCTTCTGTGTGGGGCACAGATGCCCTCTTGGATGCTTGCATTCTaGGATTGTTATCTGGGATCA | + |
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Preference number: 4 (lower is better) Translates to: CRHVGAVLCLLCGAQMPSWMLAF*DCYLGS Trigger: TGATCCCAGATAACAATCCCAGAATGCAAGCATCCA...AGAGGGCATCTGTGCCCCACACAGAAGACATAGAACAGCTCCTACGTGTCTGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR GCA 90 bp | TCTGTGCAGACACGTAGGAGCTGTTCTATGTCTTCTGTGTGGGGCACAGATGCCGCCAAATTGGATGCTTaGATTCTGGGATTGTTATCT | + |
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Preference number: 4 (lower is better) Translates to: SVQTRRSCSMSSVWGTDAAKLDA*ILGLLS Trigger: AGATAACAATCCCAGAATGCAAGCATCCAATTTGGC...GGCATCTGTGCCCCACACAGAAGACATAGAACAGCTCCTACGTGTCTGCACAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR TCA 90 bp | CTGAGACAATCCTGCACAACCTATCCTGGGCTGAATGATCCTCACAAGAATACAATGATGGCCTGTGACTaGAGAAAGCTCTGGAAGACT | + |
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Preference number: 4 (lower is better) Translates to: LRQSCTTYPGLNDPHKNTMMACD*RKLWKT Trigger: AGTCTTCCAGAGCTTTCTTCAGTCACAGGCCATCAT...TGTATTCTTGTGAGGATCATTCAGCCCAGGATAGGTTGTGCAGGATTGTCTCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR TCA 90 bp | AACCTGAGACAATCCTGCACAACCTATCCTGGGCTGAATGATCCTCACAAGAATCTCAATGATGGCCTGTaGCTGAAGAAAGCTCTGGAA | + |
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Preference number: 4 (lower is better) Translates to: NLRQSCTTYPGLNDPHKNLNDGL*LKKALE Trigger: TTCCAGAGCTTTCTTCAGTCACAGGCCATCATTGAG...ATTCTTGTGAGGATCATTCAGCCCAGGATAGGTTGTGCAGGATTGTCTCAGGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR TCA 90 bp | AAGCATTGTCTGTGCAGACACGTAGGAGCTGTTCTATGTCTTCTGTGTGGGGCATTGTTCCTTTTCTCTTaGGCCTCCATATACTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: KHCLCRHVGAVLCLLCGALFLFS*ASIYFC Trigger: GCAGAAGTATATGGAGGCTCAAGAGAAAAGGAACAA...TGCCCCACACAGAAGACATAGAACAGCTCCTACGTGTCTGCACAGACAATGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR GCA 90 bp | CTGTTCTATGTCTTCTGTGTGGGGCACAGATGCCCTCTAATCAGCACTTTTTATTGGTCAGCTGCCTTCTaGACAGCTACTGAGTTCTCA | + |
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Preference number: 4 (lower is better) Translates to: LFYVFCVGHRCPLISTFYWSAAF*TATEFS Trigger: TGAGAACTCAGTAGCTGTGCAGAAGGCAGCTGACCA...ATAAAAAGTGCTGATTAGAGGGCATCTGTGCCCCACACAGAAGACATAGAACAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR GCA 90 bp | AAGCTACAAGTGGTAGGGCGATTTGTTTTCAACATTCTCTGTGTCTTCAGTCCACTGCTCCTTCTCAGCTaGCTCCTTGTTGGTGCACTT | + |
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Preference number: 4 (lower is better) Translates to: KLQVVGRFVFNILCVFSPLLLLS*LLVGAL Trigger: AAGTGCACCAACAAGGAGGCAGCTGAGAAGGAGCAG...TGGACTGAAGACACAGAGAATGTTGAAAACAAATCGCCCTACCACTTGTAGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR GCA 90 bp | ATTAACCTGAGACAATCCTGCACAACCTATCCTGGGCTGAATGATCCTCACAAGGCCTCCATATACTTCTaGTGCTCCTTCTGCTTCTGT | + |
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Preference number: 4 (lower is better) Translates to: INLRQSCTTYPGLNDPHKASIYF*CSFCFC Trigger: ACAGAAGCAGAAGGAGCAGCAGAAGTATATGGAGGC...CTTGTGAGGATCATTCAGCCCAGGATAGGTTGTGCAGGATTGTCTCAGGTTAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR GCA 90 bp | CAAGTGGTAGGGCGATTTGTTTTCAACATTCTCTGTGTCTTCAGTCCACAAGAACTGGAAGACTTCAATTaGCTTCACCCCTTTCCTGGG | + |
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Preference number: 4 (lower is better) Translates to: QVVGRFVFNILCVFSPQELEDFN*LHPFPG Trigger: CCCAGGAAAGGGGTGAAGGCAATTGAAGTCTTCCAG...TTCTTGTGGACTGAAGACACAGAGAATGTTGAAAACAAATCGCCCTACCACTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR CCA 90 bp | GGCAAGCATTGTCTGTGCAGACACGTAGGAGCTGTTCTATGTCTTCTGTGTGGGTTCTATGTCATAAGTTaGCCGGTCAAAGACAAAACA | + |
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Preference number: 4 (lower is better) Translates to: GKHCLCRHVGAVLCLLCGFYVIS*PVKDKT Trigger: TGTTTTGTCTTTGACCGGCCAACTTATGACATAGAA...CCCACACAGAAGACATAGAACAGCTCCTACGTGTCTGCACAGACAATGCTTGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR TCA 90 bp | AAGCTACAAGTGGTAGGGCGATTTGTTTTCAACATTCTCTGTGTCTTCAGTCCAACGACTACCACTGGCTaGGAAATCTTGTCCAGAATC | + |
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Preference number: 4 (lower is better) Translates to: KLQVVGRFVFNILCVFSPTTTTG*EILSRI Trigger: GATTCTGGACAAGATTTCTCAGCCAGTGGTAGTCGT...TGGACTGAAGACACAGAGAATGTTGAAAACAAATCGCCCTACCACTTGTAGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR CCA 90 bp | AAGCATTGTCTGTGCAGACACGTAGGAGCTGTTCTATGTCTTCTGTGTGGGGCAAAAACACTTCCGATTTaGAAAGAAACGTCTGATGCA | + |
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Preference number: 4 (lower is better) Translates to: KHCLCRHVGAVLCLLCGAKTLPI*KETSDA Trigger: TGCATCAGACGTTTCTTTCCAAATCGGAAGTGTTTT...TGCCCCACACAGAAGACATAGAACAGCTCCTACGTGTCTGCACAGACAATGCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR CCA 90 bp | CTGAGACAATCCTGCACAACCTATCCTGGGCTGAATGATCCTCACAAGAATACAGTTGGTCTTCTGAGATaGTCTCAAGTTTTTGTAGGA | + |
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Preference number: 4 (lower is better) Translates to: LRQSCTTYPGLNDPHKNTVGLLR*SQVFVG Trigger: TCCTACAAAAACTTGAGACCATCTCAGAAGACCAAC...TGTATTCTTGTGAGGATCATTCAGCCCAGGATAGGTTGTGCAGGATTGTCTCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR TCA 90 bp | AAGCTACAAGTGGTAGGGCGATTTGTTTTCAACATTCTCTGTGTCTTCAGTCCAGTCCATCAAATCCTTTaGAAGTCGATCCAGTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: KLQVVGRFVFNILCVFSPVHQIL*KSIQFF Trigger: GAAGAACTGGATCGACTTTCAAAGGATTTGATGGAC...TGGACTGAAGACACAGAGAATGTTGAAAACAAATCGCCCTACCACTTGTAGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR CCA 90 bp | AAGCTACAAGTGGTAGGGCGATTTGTTTTCAACATTCTCTGTGTCTTCAGTCCAAACATAGGATCCAGTTaGTCTTCTGAGATGGTCTCA | + |
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Preference number: 4 (lower is better) Translates to: KLQVVGRFVFNILCVFSPNIGSS*SSEMVS Trigger: TGAGACCATCTCAGAAGACCAACTGGATCCTATGTT...TGGACTGAAGACACAGAGAATGTTGAAAACAAATCGCCCTACCACTTGTAGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR CCA 90 bp | ACCAACTTAAGAAAGGGTTTGTTGTGGTCCATGAATCATGATGATACATTCTGTTGTCCAGAATCTCTATaGCTTCCTGGTTCACCAACA | + |
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Preference number: 4 (lower is better) Translates to: TNLRKGLLWSMNHDDTFCCPESL*LPGSPT Trigger: TGTTGGTGAACCAGGAAGCCATAGAGATTCTGGACA...ACAGAATGTATCATCATGATTCATGGACCACAACAAACCCTTTCTTAAGTTGGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR CAA 90 bp | CTGAGACAATCCTGCACAACCTATCCTGGGCTGAATGATCCTCACAAGAATACACACGCTGGGCCAGAGTaGTCACAGCATCATGCAGAC | + |
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Preference number: 5 (lower is better) Translates to: LRQSCTTYPGLNDPHKNTHAGPE*SQHHAD Trigger: GTCTGCATGATGCTGTGACAACTCTGGCCCAGCGTG...TGTATTCTTGTGAGGATCATTCAGCCCAGGATAGGTTGTGCAGGATTGTCTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR CAA 90 bp | ATTAACCTGAGACAATCCTGCACAACCTATCCTGGGCTGAATGATCCTCACAAGTCAGCTGCCTCCTTGTaGGTGCACTTCTCTGCAATG | + |
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Preference number: 5 (lower is better) Translates to: INLRQSCTTYPGLNDPHKSAASL*VHFSAM Trigger: CATTGCAGAGAAGTGCACCAACAAGGAGGCAGCTGA...CTTGTGAGGATCATTCAGCCCAGGATAGGTTGTGCAGGATTGTCTCAGGTTAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR CAA 90 bp | ATTAACCTGAGACAATCCTGCACAACCTATCCTGGGCTGAATGATCCTCACAAGTTCTCAGCTGCCTCCTaGTTGGTGCACTTCTCTGCA | + |
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Preference number: 5 (lower is better) Translates to: INLRQSCTTYPGLNDPHKFSAAS*LVHFSA Trigger: TGCAGAGAAGTGCACCAACAAGGAGGCAGCTGAGAA...CTTGTGAGGATCATTCAGCCCAGGATAGGTTGTGCAGGATTGTCTCAGGTTAAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR CAA 90 bp | GGCAAGCATTGTCTGTGCAGACACGTAGGAGCTGTTCTATGTCTTCTGTGTGGGACCAACAGCTGTTCATaGTGGTTTTCCACAAGACAA | + |
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Preference number: 5 (lower is better) Translates to: GKHCLCRHVGAVLCLLCGTNSCS*WFSTRQ Trigger: TTGTCTTGTGGAAAACCACAATGAACAGCTGTTGGT...CCCACACAGAAGACATAGAACAGCTCCTACGTGTCTGCACAGACAATGCTTGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR CAA 90 bp | GGCAAGCATTGTCTGTGCAGACACGTAGGAGCTGTTCTATGTCTTCTGTGTGGGCTTGTTCCTTTTCTCTaGAGCCTCCATATACTTCTG | + |
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Preference number: 5 (lower is better) Translates to: GKHCLCRHVGAVLCLLCGLVPFL*SLHILL Trigger: CAGAAGTATATGGAGGCTCAAGAGAAAAGGAACAAG...CCCACACAGAAGACATAGAACAGCTCCTACGTGTCTGCACAGACAATGCTTGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS CCA 90 bp | ACTGAAGAAAGCTCTGGAAGACTTCAATTGCCTTCACCCCTTTCCTaGGAACCTGCTAGTAGTCATGTTCAATCTTCTCCCTCATGTCCA | + |
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Preference number: 5 (lower is better) Translates to: TEESSGRLQLPSPLS*EPASSHVQSSPSCP Trigger: TGGACATGAGGGAGAAGATTGAACATGACTACTAGCAGGTTCCCAGGAAAGGGGTGAAGGCAATTGAAGTCTTCCAGAGCTTTCTTCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS GCA 90 bp | TTCTCCAGCATCATGTTATGGTCTTTGATGAGCTGCTCTCTCTCCTaGATCAGCTTCCTTCTCAGTTGCTCTAGGTTTTCCTTGTTCCTT | + |
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Preference number: 5 (lower is better) Translates to: FSSIMLWSLMSCSLS*ISFLLSCSRFSLFL Trigger: AAGGAACAAGGAAAACCTAGAGCAACTGAGAAGGAAGCTGATGCAGGAGAGAGAGCAGCTCATCAAAGACCATAACATGATGCTGGAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS GCA 90 bp | TCCTTCATTAGCTTCTCCAGCATCATGTTATGGTCTTTGATGAGCTaGTCTCTCTCCTGCATCAGCTTCCTTCTCAGTTGCTCTAGGTTT | + |
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Preference number: 5 (lower is better) Translates to: SFISFSSIMLWSLMS*SLSCISFLLSCSRF Trigger: AAACCTAGAGCAACTGAGAAGGAAGCTGATGCAGGAGAGAGAGCAGCTCATCAAAGACCATAACATGATGCTGGAGAAGCTAATGAAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS-3UTR CAA 90 bp | CTGTTCTATGTCTTCTGTGTGGGGCACAGATGCCCTCTAATCAGCACTTTTTATTGTCCATCAAATCCTTaGAAAGTCGATCCAGTTCTT | + |
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Preference number: 5 (lower is better) Translates to: LFYVFCVGHRCPLISTFYCPSNP*KVDPVL Trigger: AAGAACTGGATCGACTTTCAAAGGATTTGATGGACA...ATAAAAAGTGCTGATTAGAGGGCATCTGTGCCCCACACAGAAGACATAGAACAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS GCA 90 bp | TCCATTCCCGGTGACCTTAATTCCCTCTTTGAGGGTCTTAATCTTTaGATAATTGAAGATGTAAGAGACAAAAGCCTTTGTTCTTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: SIPGDLNSLFEGLNL*IIEDVRDKSLCSFL Trigger: CAGGAAAGAACAAAGGCTTTTGTCTCTTACATCTTCAATTATGCAAAGATTAAGACCCTCAAAGAGGGAATTAAGGTCACCGGGAATGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100960.11 ENSMUST00000171587.2 |
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| CDS TCA 90 bp | TTACAGCACTGTCCACAAAGAAATCACTGTTTTGTTTCATATCCTTaGTGTTATGTCTCAGTCGATAGATCTCTCTTCTCATTTCCTCAG | + |
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Preference number: 5 (lower is better) Translates to: LQHCPQRNHCFVSYP*CYVSVDRSLFSFPQ Trigger: CTGAGGAAATGAGAAGAGAGATCTATCGACTGAGACATAACATCAAGGATATGAAACAAAACAGTGATTTCTTTGTGGACAGTGCTGTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS GCA 72 bp | GCCTCCTTGTTGGTGCACTTCTCTGCAATGGCCTTCTaGCCAGCAATGAGGGCTGTGTCTGCCTGCAGGATG | + |
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Preference number: 6 (lower is better) Translates to: ASLLVHFSAMAF*PAMRAVSACRM Trigger: CATCCTGCAGGCAGACACAGCCCTCATTGCTGGGCAGAAGGCCATTGCAGAGAAGTGCACCAACAAGGAGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS GCA 72 bp | CTCCTTCTCAGCTGCCTCCTTGTTGGTGCACTTCTCTaGAATGGCCTTCTGCCCAGCAATGAGGGCTGTGTC | + |
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Preference number: 6 (lower is better) Translates to: LLLSCLLVGALL*NGLLPSNEGCV Trigger: GACACAGCCCTCATTGCTGGGCAGAAGGCCATTGCAGAGAAGTGCACCAACAAGGAGGCAGCTGAGAAGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS CAA 72 bp | TGGCCTGTGACTGAAGAAAGCTCTGGAAGACTTCAATaGCCTTCACCCCTTTCCTGGGAACCTGCTAGTAGT | + |
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Preference number: 6 (lower is better) Translates to: WPVTEESSGRLQ*PSPLSWEPASS Trigger: ACTACTAGCAGGTTCCCAGGAAAGGGGTGAAGGCAATTGAAGTCTTCCAGAGCTTTCTTCAGTCACAGGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS TCA 72 bp | CGGTACAATCCAACAATAGCCACGACTACCACTGGCTaGGAAATCTTGTCCAGAATCTCTATGGCTTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: RYNPTIATTTTG*EILSRISMASW Trigger: CCAGGAAGCCATAGAGATTCTGGACAAGATTTCTCAGCCAGTGGTAGTCGTGGCTATTGTTGGATTGTACCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100960.11 ENSMUST00000171587.2 |
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| CDS GCA 72 bp | AGCTTCTCCAGCATCATGTTATGGTCTTTGATGAGCTaGTCTCTCTCCTGCATCAGCTTCCTTCTCAGTTGC | + |
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Preference number: 6 (lower is better) Translates to: SFSSIMLWSLMS*SLSCISFLLSC Trigger: GCAACTGAGAAGGAAGCTGATGCAGGAGAGAGAGCAGCTCATCAAAGACCATAACATGATGCTGGAGAAGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS CCA 72 bp | AGCTCTGGAAGACTTCAATTGCCTTCACCCCTTTCCTaGGAACCTGCTAGTAGTCATGTTCAATCTTCTCCC | + |
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Preference number: 6 (lower is better) Translates to: SSGRLQLPSPLS*EPASSHVQSSP Trigger: GGGAGAAGATTGAACATGACTACTAGCAGGTTCCCAGGAAAGGGGTGAAGGCAATTGAAGTCTTCCAGAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS CAA 90 bp | GCCTTTTGTTCCTTCATTAGCTTCTCCAGCATCATGTTATGGTCTTaGATGAGCTGCTCTCTCTCCTGCATCAGCTTCCTTCTCAGTTGC | + |
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Preference number: 6 (lower is better) Translates to: AFCSFISFSSIMLWS*MSCSLSCISFLLSC Trigger: GCAACTGAGAAGGAAGCTGATGCAGGAGAGAGAGCAGCTCATCAAAGACCATAACATGATGCTGGAGAAGCTAATGAAGGAACAAAAGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS GCA 72 bp | AAACGTCTGATGCATTCCCTGGCCAAATTGGATGCTTaGATTCTGGGATTGTTATCTGGGATCAGCTTCAGG | + |
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Preference number: 6 (lower is better) Translates to: KRLMHSLAKLDA*ILGLLSGISFR Trigger: CCTGAAGCTGATCCCAGATAACAATCCCAGAATGCAAGCATCCAATTTGGCCAGGGAATGCATCAGACGTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100960.11 ENSMUST00000171587.2 |
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| CDS GCA 72 bp | ATCATGTTATGGTCTTTGATGAGCTGCTCTCTCTCCTaGATCAGCTTCCTTCTCAGTTGCTCTAGGTTTTCC | + |
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Preference number: 6 (lower is better) Translates to: IMLWSLMSCSLS*ISFLLSCSRFS Trigger: GGAAAACCTAGAGCAACTGAGAAGGAAGCTGATGCAGGAGAGAGAGCAGCTCATCAAAGACCATAACATGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000100960.11 |
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| CDS GCA 72 bp | AAAGAAACGTCTGATGCATTCCCTGGCCAAATTGGATaGTTGCATTCTGGGATTGTTATCTGGGATCAGCTT | + |
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Preference number: 6 (lower is better) Translates to: KETSDAFPGQIG*LHSGIVIWDQL Trigger: AAGCTGATCCCAGATAACAATCCCAGAATGCAAGCATCCAATTTGGCCAGGGAATGCATCAGACGTTTCTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100960.11 ENSMUST00000171587.2 |
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