Pregenerated sensors for GBGT1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026829

Ensembl transcript IDs: ENSMUST00000028172.2, ENSMUST00000163121.8

Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GCTCTTCAGAAGCTCCGGGTCAAAGGTTCCCTCGGAGACGATGGGTaGCAACCACGGGGTAAGTGTCAGCAGCTCTGTGGGTCCGTGTTC	+
Preference number: 5 (lower is better) Translates to: ALQKLRVKGSLGDDG*QPRGKCQQLCGSVF Trigger: GAACACGGACCCACAGAGCTGCTGACACTTACCCCGTGGTTGGCACCCATCGTCTCCGAGGGAACCTTTGACCCGGAGCTTCTGAAGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028172.2 ENSMUST00000163121.8
CDS CCA 90 bp	TTCCCCACGGCAAACACGGTGACGCCAATGGTCAGGTTCAACGGCTaGTACATGCTCTTCAGAAGCTCCGGGTCAAAGGTTCCCTCGGAG	+
Preference number: 5 (lower is better) Translates to: FPTANTVTPMVRFNG*YMLFRSSGSKVPSE Trigger: CTCCGAGGGAACCTTTGACCCGGAGCTTCTGAAGAGCATGTACCAGCCGTTGAACCTGACCATTGGCGTCACCGTGTTTGCCGTGGGGAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028172.2 ENSMUST00000163121.8
CDS GCA 90 bp	GGCCCGGGTAAACTCATACACTCTGGCCACTCGTCCCCCAAAGAGTaGCCCACCATAATAGAAGTCCCCCTCATTGTCTGCCACAAAGGC	+
Preference number: 5 (lower is better) Translates to: GPGKLIHSGHSSPKE*PTIIEVPLIVCHKG Trigger: GCCTTTGTGGCAGACAATGAGGGGGACTTCTATTATGGTGGGGCACTCTTTGGGGGACGAGTGGCCAGAGTGTATGAGTTTACCCGGGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000028172.2 ENSMUST00000163121.8
CDS CCA 90 bp	CAGGCTGCCATAATGCTGTTAGCTTTGTCTGCCAGAATGGCCATGTaGCAGGCCCGGGTAAACTCATACACTCTGGCCACTCGTCCCCCA	+
Preference number: 5 (lower is better) Translates to: QAAIMLLALSARMAM*QARVNSYTLATRPP Trigger: TGGGGGACGAGTGGCCAGAGTGTATGAGTTTACCCGGGCCTGCCACATGGCCATTCTGGCAGACAAAGCTAACAGCATTATGGCAGCCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028172.2 ENSMUST00000163121.8
CDS CCA 90 bp	CTTCAGGCTTCGGGGCCGAGGCTTCCTTTCATCCCAGAGGTACTCTaGGGACAGCACCTTAGATGGTTTGTGCCAGATGAAGTGGCGGTT	+
Preference number: 5 (lower is better) Translates to: LQASGPRLPFIPEVL*GQHLRWFVPDEVAV Trigger: AACCGCCACTTCATCTGGCACAAACCATCTAAGGTGCTGTCCCCAGAGTACCTCTGGGATGAAAGGAAGCCTCGGCCCCGAAGCCTGAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028172.2 ENSMUST00000163121.8
CDS GCA 90 bp	GATGGTTTGTGCCAGATGAAGTGGCGGTTCAGGTGGCTCTCCTCCTaGCAGGCTGCCATAATGCTGTTAGCTTTGTCTGCCAGAATGGCC	+
Preference number: 5 (lower is better) Translates to: DGLCQMKWRFRWLSS*QAAIMLLALSARMA Trigger: GGCCATTCTGGCAGACAAAGCTAACAGCATTATGGCAGCCTGGCAGGAGGAGAGCCACCTGAACCGCCACTTCATCTGGCACAAACCATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028172.2 ENSMUST00000163121.8
CDS TCA 90 bp	GTAAGTGTCAGCAGCTCTGTGGGTCCGTGTTCCAGCAGCTTAGGCTaGGGGTACTGTAACTGTGTCACAGGCTGCAACGGTTTCTCCTTC	+
Preference number: 5 (lower is better) Translates to: VSVSSSVGPCSSSLG*GYCNCVTGCNGFSF Trigger: GAAGGAGAAACCGTTGCAGCCTGTGACACAGTTACAGTACCCTCAGCCTAAGCTGCTGGAACACGGACCCACAGAGCTGCTGACACTTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028172.2 ENSMUST00000163121.8
CDS CCA 90 bp	CAACGGTTTCTCCTTCCTGAAGGGCAGCTTCATGTTGAAGAACTCTaGGCAGGGGAGGTAATAGGGTATGTAGGAGACCAGCAGCCAGTC	+
Preference number: 5 (lower is better) Translates to: QRFLLPEGQLHVEEL*AGEVIGYVGDQQPV Trigger: GACTGGCTGCTGGTCTCCTACATACCCTATTACCTCCCCTGCCCAGAGTTCTTCAACATGAAGCTGCCCTTCAGGAAGGAGAAACCGTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028172.2 ENSMUST00000163121.8
CDS GCA 72 bp	AAGCTCCGGGTCAAAGGTTCCCTCGGAGACGATGGGTaGCAACCACGGGGTAAGTGTCAGCAGCTCTGTGGG	+
Preference number: 6 (lower is better) Translates to: KLRVKGSLGDDG*QPRGKCQQLCG Trigger: CCCACAGAGCTGCTGACACTTACCCCGTGGTTGGCACCCATCGTCTCCGAGGGAACCTTTGACCCGGAGCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028172.2 ENSMUST00000163121.8
CDS TCA 72 bp	AGCAGCTCTGTGGGTCCGTGTTCCAGCAGCTTAGGCTaGGGGTACTGTAACTGTGTCACAGGCTGCAACGGT	+
Preference number: 6 (lower is better) Translates to: SSSVGPCSSSLG*GYCNCVTGCNG Trigger: ACCGTTGCAGCCTGTGACACAGTTACAGTACCCTCAGCCTAAGCTGCTGGAACACGGACCCACAGAGCTGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028172.2 ENSMUST00000163121.8
CDS GCA 72 bp	TGCCAGATGAAGTGGCGGTTCAGGTGGCTCTCCTCCTaGCAGGCTGCCATAATGCTGTTAGCTTTGTCTGCC	+
Preference number: 6 (lower is better) Translates to: CQMKWRFRWLSS*QAAIMLLALSA Trigger: GGCAGACAAAGCTAACAGCATTATGGCAGCCTGGCAGGAGGAGAGCCACCTGAACCGCCACTTCATCTGGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028172.2 ENSMUST00000163121.8
CDS CCA 72 bp	GCAAACACGGTGACGCCAATGGTCAGGTTCAACGGCTaGTACATGCTCTTCAGAAGCTCCGGGTCAAAGGTT	+
Preference number: 6 (lower is better) Translates to: ANTVTPMVRFNG*YMLFRSSGSKV Trigger: AACCTTTGACCCGGAGCTTCTGAAGAGCATGTACCAGCCGTTGAACCTGACCATTGGCGTCACCGTGTTTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028172.2 ENSMUST00000163121.8
CDS CAA 72 bp	GTCCCCCTCATTGTCTGCCACAAAGGCAGAGGAAACTaGCCTGCGTTCATAAGGGAATTTCCGGCGAGGTAC	+
Preference number: 6 (lower is better) Translates to: VPLIVCHKGRGN*PAFIREFPARY Trigger: GTACCTCGCCGGAAATTCCCTTATGAACGCAGGCAAGTTTCCTCTGCCTTTGTGGCAGACAATGAGGGGGAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000028172.2 ENSMUST00000163121.8
CDS TCA 72 bp	CGCATAAAGAACTCTTCAGCTGACTCCAGGAAGCGCTaGATGAAGCAGGTGTACTTCCCCACGGCAAACACG	+
Preference number: 6 (lower is better) Translates to: RIKNSSADSRKR*MKQVYFPTANT Trigger: CGTGTTTGCCGTGGGGAAGTACACCTGCTTCATTCAGCGCTTCCTGGAGTCAGCTGAAGAGTTCTTTATGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028172.2 ENSMUST00000163121.8
CDS GCA 72 bp	AAACTCATACACTCTGGCCACTCGTCCCCCAAAGAGTaGCCCACCATAATAGAAGTCCCCCTCATTGTCTGC	+
Preference number: 6 (lower is better) Translates to: KLIHSGHSSPKE*PTIIEVPLIVC Trigger: GCAGACAATGAGGGGGACTTCTATTATGGTGGGGCACTCTTTGGGGGACGAGTGGCCAGAGTGTATGAGTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000028172.2 ENSMUST00000163121.8
CDS GCA 72 bp	CCTCATTGTCTGCCACAAAGGCAGAGGAAACTTGCCTaGGTTCATAAGGGAATTTCCGGCGAGGTACAGCAA	+
Preference number: 6 (lower is better) Translates to: PHCLPQRQRKLA*VHKGISGEVQQ Trigger: TTGCTGTACCTCGCCGGAAATTCCCTTATGAACGCAGGCAAGTTTCCTCTGCCTTTGTGGCAGACAATGAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028172.2 ENSMUST00000163121.8
CDS GCA 72 bp	GAGTGCCCCACCATAATAGAAGTCCCCCTCATTGTCTaGCACAAAGGCAGAGGAAACTTGCCTGCGTTCATA	+
Preference number: 6 (lower is better) Translates to: ECPTIIEVPLIV*HKGRGNLPAFI Trigger: TATGAACGCAGGCAAGTTTCCTCTGCCTTTGTGGCAGACAATGAGGGGGACTTCTATTATGGTGGGGCACTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028172.2 ENSMUST00000163121.8
CDS CCA 72 bp	ATAATGCTGTTAGCTTTGTCTGCCAGAATGGCCATGTaGCAGGCCCGGGTAAACTCATACACTCTGGCCACT	+
Preference number: 6 (lower is better) Translates to: IMLLALSARMAM*QARVNSYTLAT Trigger: AGTGGCCAGAGTGTATGAGTTTACCCGGGCCTGCCACATGGCCATTCTGGCAGACAAAGCTAACAGCATTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028172.2 ENSMUST00000163121.8
CDS CAA 90 bp	ATAATAGAAGTCCCCCTCATTGTCTGCCACAAAGGCAGAGGAAACTaGCCTGCGTTCATAAGGGAATTTCCGGCGAGGTACAGCAAAATA	+
Preference number: 6 (lower is better) Translates to: IIEVPLIVCHKGRGN*PAFIREFPARYSKI Trigger: TATTTTGCTGTACCTCGCCGGAAATTCCCTTATGAACGCAGGCAAGTTTCCTCTGCCTTTGTGGCAGACAATGAGGGGGACTTCTATTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028172.2 ENSMUST00000163121.8