RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GBF1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025224

Ensembl transcript IDs: ENSMUST00000026254.14, ENSMUST00000175747.2, ENSMUST00000176574.2, ENSMUST00000177512.3

Found 407 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTAATGCCCAACCTGGCAGGGGGCACATGGCAGGCACTGCAGGGTTaGCACGGCAGGGTTGGCTCTATGCCTTCCCAGGGATGCCAGGCT +
Preference number: 1 (lower is better)
Translates to: LMPNLAGGTWQALQG*HGRVGSMPSQGCQA
Trigger: AGCCTGGCATCCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCCAGGTTGGGCATTAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
3UTR CCA 90 bp GGCCCAGGACTGAGGGGACTGGATAGAGAGGAACAAAGTGCAGAGTaGCTGGGCTTGGCTCTAATGCCCAACCTGGCAGGGGGCACATGG +
Preference number: 1 (lower is better)
Translates to: GPGLRGLDREEQSAE*LGLALMPNLAGGTW
Trigger: CCATGTGCCCCCTGCCAGGTTGGGCATTAGAGCCAAGCCCAGCCACTCTGCACTTTGTTCCTCTCTATCCAGTCCCCTCAGTCCTGGGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
3UTR CCA 90 bp AGGTTCTGCCTGCATCCACTCTCAGTTTGGAAGCTCAGGAATGAATaGCAGAGGAAGAGTCTCGCAGCCTGGAGTGGATCCCAGCAGGGA +
Preference number: 1 (lower is better)
Translates to: RFCLHPLSVWKLRNE*QRKSLAAWSGSQQG
Trigger: TCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTTCCTCTGCCATTCATTCCTGAGCTTCCAAACTGAGAGTGGATGCAGGCAGAACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
3UTR CAA 90 bp TGGCAGGGGGCACATGGCAGGCACTGCAGGGTTGGCACGGCAGGGTaGGCTCTATGCCTTCCCAGGGATGCCAGGCTGGAGGCAGAGGCT +
Preference number: 2 (lower is better)
Translates to: WQGAHGRHCRVGTAG*ALCLPRDARLEAEA
Trigger: AGCCTCTGCCTCCAGCCTGGCATCCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
3UTR CAA 90 bp TCTAATGCCCAACCTGGCAGGGGGCACATGGCAGGCACTGCAGGGTaGGCACGGCAGGGTTGGCTCTATGCCTTCCCAGGGATGCCAGGC +
Preference number: 2 (lower is better)
Translates to: SNAQPGRGHMAGTAG*ARQGWLYAFPGMPG
Trigger: GCCTGGCATCCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCCAGGTTGGGCATTAGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
3UTR CAA 90 bp CTGAGGGGACTGGATAGAGAGGAACAAAGTGCAGAGTGGCTGGGCTaGGCTCTAATGCCCAACCTGGCAGGGGGCACATGGCAGGCACTG +
Preference number: 2 (lower is better)
Translates to: LRGLDREEQSAEWLG*ALMPNLAGGTWQAL
Trigger: CAGTGCCTGCCATGTGCCCCCTGCCAGGTTGGGCATTAGAGCCAAGCCCAGCCACTCTGCACTTTGTTCCTCTCTATCCAGTCCCCTCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
3UTR-3UTR TCA 90 bp TATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCAGGAAGGAATGGTCCTaGTCTCTGAGGGGACCTGCC +
Preference number: 2 (lower is better)
Translates to: YVHAPVGRPPSSPICPPSRKEWS*SLRGPA
Trigger: GGCAGGTCCCCTCAGAGATCAGGACCATTCCTTCCT...GGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
3UTR-3UTR CCA 90 bp GGCACTGCAGGGTTGGCACGGCAGGGTTGGCTCTATGCCTTCCCAGGGATGCCAAAGCTCAGGAATGAATaGCAGAGGAAGAGTCTCGCA +
Preference number: 2 (lower is better)
Translates to: GTAGLARQGWLYAFPGMPKLRNE*QRKSLA
Trigger: TGCGAGACTCTTCCTCTGCCATTCATTCCTGAGCTT...TGGCATCCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACCCTGCAGTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
3UTR-3UTR CCA 90 bp TATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGAACAAAGTGCAGAGTaGCTGGGCTTGGCTCTAATG +
Preference number: 2 (lower is better)
Translates to: YVHAPVGRPPSSPICPPSEQSAE*LGLALM
Trigger: CATTAGAGCCAAGCCCAGCCACTCTGCACTTTGTTC...GGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
3UTR-3UTR CCA 90 bp ACCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCAAGAGTCTCGCAGCCTaGAGTGGATCCCAGCAGGGA +
Preference number: 2 (lower is better)
Translates to: TVIIFHMYMLLWAGPHRVKSLAA*SGSQQG
Trigger: TCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTT...GACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
3UTR-3UTR CCA 90 bp ACCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCTCTCGCAGCCTGGAGTaGATCCCAGCAGGGACTATA +
Preference number: 2 (lower is better)
Translates to: TVIIFHMYMLLWAGPHRVSRSLE*IPAGTI
Trigger: TATAGTCCCTGCTGGGATCCACTCCAGGCTGCGAGA...GACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
3UTR-3UTR GCA 90 bp ATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGAGTGGATCCCAGCAGGGACTATGTAGCAACAGCAGCTTaGTTTAGGCCTGAAGATTTC +
Preference number: 2 (lower is better)
Translates to: MNGRGRVSQPGVDPSRDYVATAA*FRPEDF
Trigger: GAAATCTTCAGGCCTAAAGCAAGCTGCTGTTGCTAC...ATAGTCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTTCCTCTGCCATTCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
3UTR-3UTR GCA 90 bp ACGGACCAGACCTGTCTGCTCCTCAGGCATCACAATCTCCTCATTCTTGATGGCTCTTCCAGGATGTCTTaGTCAAAGTCCTTGCCTCCA +
Preference number: 2 (lower is better)
Translates to: TDQTCLLLRHHNLLILDGSSRMS*SKSLPP
Trigger: TGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGA...GCCATCAAGAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177512.3
3UTR-3UTR GCA 90 bp TATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCGCTACAGGTTCTGCCTaGATCCACTCTCAGTTTGGA +
Preference number: 2 (lower is better)
Translates to: YHFPYVHAPVGRPPSSPIATGSA*IHSQFG
Trigger: TCCAAACTGAGAGTGGATGCAGGCAGAACCTGTAGC...GATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
3UTR-3UTR GCA 90 bp TCACGGACCAGACCTGTCTGCTCCTCAGGCATCACAATCTCCTCATTCTTGATGCTCCAGGGTCATGGGTaGATTCTGCTTTCGAACATT +
Preference number: 2 (lower is better)
Translates to: SRTRPVCSSGITISSFLMLQGHG*ILLSNI
Trigger: AATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG...CATCAAGAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177512.3
3UTR-3UTR GCA 90 bp ACGGACCAGACCTGTCTGCTCCTCAGGCATCACAATCTCCTCATTCTTGATGGCCTTGCTCAAAGTCCTTaGCTCCATTCACACCTTTTA +
Preference number: 2 (lower is better)
Translates to: TDQTCLLLRHHNLLILDGLAQSP*LHSHLL
Trigger: TAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAG...GCCATCAAGAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177512.3
3UTR CAA 90 bp TTGATGGCATGGTACATGTCTTCCAGGATGTCTTGCTCAAAGTCCTaGCCTCCATTCACACCTTTTAGGTTTTTGCGAAATTCCTCCAGG +
Preference number: 2 (lower is better)
Translates to: LMAWYMSSRMSCSKS*PPFTPFRFLRNSSR
Trigger: CCTGGAGGAATTTCGCAAAAACCTAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGACATGTACCATGCCATCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000177512.3
3UTR-3UTR CCA 90 bp ACCTGTCTGCTCCTCAGGCATCACAATCTCCTCATTCTTGATGGCATGGTACATTGCTTTCGAACATTGTaGTTATGTTGGTCAGTGTTA +
Preference number: 2 (lower is better)
Translates to: TCLLLRHHNLLILDGMVHCFRTL*LCWSVL
Trigger: TAACACTGACCAACATAACCACAATGTTCGAAAGCA...ATGTACCATGCCATCAAGAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177512.3
3UTR CCA 72 bp AACCTGGCAGGGGGCACATGGCAGGCACTGCAGGGTTaGCACGGCAGGGTTGGCTCTATGCCTTCCCAGGGA +
Preference number: 3 (lower is better)
Translates to: NLAGGTWQALQG*HGRVGSMPSQG
Trigger: TCCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCCAGGTT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
3UTR CCA 72 bp CTGAGGGGACTGGATAGAGAGGAACAAAGTGCAGAGTaGCTGGGCTTGGCTCTAATGCCCAACCTGGCAGGG +
Preference number: 3 (lower is better)
Translates to: LRGLDREEQSAE*LGLALMPNLAG
Trigger: CCCTGCCAGGTTGGGCATTAGAGCCAAGCCCAGCCACTCTGCACTTTGTTCCTCTCTATCCAGTCCCCTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
3UTR-3UTR CAA 90 bp CGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTGCAGAGTGGCTGGGCTaGGCTCTAATGCCCAACCTG +
Preference number: 3 (lower is better)
Translates to: RYHFPYVHAPVGRPPSSPAEWLG*ALMPNL
Trigger: CAGGTTGGGCATTAGAGCCAAGCCCAGCCACTCTGC...AGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
3UTR TCA 72 bp CTGCCTGCATCCACTCTCAGTTTGGAAGCTCAGGAATaGATGGCAGAGGAAGAGTCTCGCAGCCTGGAGTGG +
Preference number: 3 (lower is better)
Translates to: LPASTLSLEAQE*MAEEESRSLEW
Trigger: CCACTCCAGGCTGCGAGACTCTTCCTCTGCCATTCATTCCTGAGCTTCCAAACTGAGAGTGGATGCAGGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
3UTR CCA 72 bp CTGCATCCACTCTCAGTTTGGAAGCTCAGGAATGAATaGCAGAGGAAGAGTCTCGCAGCCTGGAGTGGATCC +
Preference number: 3 (lower is better)
Translates to: LHPLSVWKLRNE*QRKSLAAWSGS
Trigger: GGATCCACTCCAGGCTGCGAGACTCTTCCTCTGCCATTCATTCCTGAGCTTCCAAACTGAGAGTGGATGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
3UTR CCA 72 bp TCCACCGTTATCATTTTCCATATGTACATGCTCCTGTaGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCT +
Preference number: 3 (lower is better)
Translates to: STVIIFHMYMLL*AGPHRVLSVHP
Trigger: AGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGGTGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
3UTR CCA 72 bp AGAGGCTACAGGTTCTGCCTGCATCCACTCTCAGTTTaGAAGCTCAGGAATGAATGGCAGAGGAAGAGTCTC +
Preference number: 3 (lower is better)
Translates to: RGYRFCLHPLSV*KLRNEWQRKSL
Trigger: GAGACTCTTCCTCTGCCATTCATTCCTGAGCTTCCAAACTGAGAGTGGATGCAGGCAGAACCTGTAGCCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
3UTR-3UTR CAA 90 bp ACGGACCAGACCTGTCTGCTCCTCAGGCATCACAATCTCCTCATTCTTGATGGCTCTTGCTCAAAGTCCTaGCCTCCATTCACACCTTTT +
Preference number: 3 (lower is better)
Translates to: TDQTCLLLRHHNLLILDGSCSKS*PPFTPF
Trigger: AAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGA...GCCATCAAGAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177512.3
3UTR-3UTR CAA 90 bp TCACGGACCAGACCTGTCTGCTCCTCAGGCATCACAATCTCCTCATTCTTGATGACACCTTTTAGGTTTTaGCGAAATTCCTCCAGGGTC +
Preference number: 3 (lower is better)
Translates to: SRTRPVCSSGITISSFLMTPFRF*RNSSRV
Trigger: GACCCTGGAGGAATTTCGCAAAAACCTAAAAGGTGT...CATCAAGAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177512.3
3UTR-3UTR CAA 90 bp ACGGACCAGACCTGTCTGCTCCTCAGGCATCACAATCTCCTCATTCTTGATGGCAACATTGTGGTTATGTaGGTCAGTGTTAAGCATGAT +
Preference number: 3 (lower is better)
Translates to: TDQTCLLLRHHNLLILDGNIVVM*VSVKHD
Trigger: ATCATGCTTAACACTGACCAACATAACCACAATGTT...GCCATCAAGAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177512.3
3UTR CCA 72 bp TCCAGGGTCATGGGTGCATTCTGCTTTCGAACATTGTaGTTATGTTGGTCAGTGTTAAGCATGATGACAGCA +
Preference number: 3 (lower is better)
Translates to: SRVMGAFCFRTL*LCWSVLSMMTA
Trigger: TGCTGTCATCATGCTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177512.3
3UTR GCA 72 bp TTTTTGCGAAATTCCTCCAGGGTCATGGGTGCATTCTaGTTTCGAACATTGTGGTTATGTTGGTCAGTGTTA +
Preference number: 3 (lower is better)
Translates to: FLRNSSRVMGAF*FRTLWLCWSVL
Trigger: TAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAGGAATTTCGCAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177512.3
CDS-3UTR CCA 90 bp CCAACCTGGCAGGGGGCACATGGCAGGCACTGCAGGGTTGGCACGGCAGGGTTGTGGGGGCTGGGTCAGTaGGGGAGGTCCCTCTTGGGC +
Preference number: 4 (lower is better)
Translates to: PTWQGAHGRHCRVGTAGLWGLGQ*GRSLLG
Trigger: GCCCAAGAGGGACCTCCCCCACTGACCCAGCCCCCA...CAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCCAGGTTGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp CTGGGCTTGGCTCTAATGCCCAACCTGGCAGGGGGCACATGGCAGGCACTGCAGCGGGGGAGCTGCTGCTaGGAGCTCGGGTACTCTCGG +
Preference number: 4 (lower is better)
Translates to: LGLALMPNLAGGTWQALQRGSCC*ELGYSR
Trigger: CCGAGAGTACCCGAGCTCCCAGCAGCAGCTCCCCCG...CTGCAGTGCCTGCCATGTGCCCCCTGCCAGGTTGGGCATTAGAGCCAAGCCCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
3UTR CAA 72 bp CAACCTGGCAGGGGGCACATGGCAGGCACTGCAGGGTaGGCACGGCAGGGTTGGCTCTATGCCTTCCCAGGG +
Preference number: 4 (lower is better)
Translates to: QPGRGHMAGTAG*ARQGWLYAFPG
Trigger: CCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCCAGGTTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp ACCTGGCAGGGGGCACATGGCAGGCACTGCAGGGTTGGCACGGCAGGGTTGGCTAGATATGTCAGGGCCTaGATCCGTACCTGGCGCCGG +
Preference number: 4 (lower is better)
Translates to: TWQGAHGRHCRVGTAGLARYVRA*IRTWRR
Trigger: CCGGCGCCAGGTACGGATGCAGGCCCTGACATATCT...AGCCAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCCAGGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp TGGCAGGGGGCACATGGCAGGCACTGCAGGGTTGGCACGGCAGGGTTGGCTCTATATCTCTGGGAGAGGTaGATGGCCAGGCATCCTGGG +
Preference number: 4 (lower is better)
Translates to: WQGAHGRHCRVGTAGLALYLWER*MARHPG
Trigger: CCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATA...TAGAGCCAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp GGCCCAGGACTGAGGGGACTGGATAGAGAGGAACAAAGTGCAGAGTGGCTGGGCGACCCCCACCTGCAGTaGGGAGGTCAAGGGCTGCAG +
Preference number: 4 (lower is better)
Translates to: GPGLRGLDREEQSAEWLGDPHLQ*GGQGLQ
Trigger: CTGCAGCCCTTGACCTCCCCACTGCAGGTGGGGGTC...GCCCAGCCACTCTGCACTTTGTTCCTCTCTATCCAGTCCCCTCAGTCCTGGGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp GGTTGGCACGGCAGGGTTGGCTCTATGCCTTCCCAGGGATGCCAGGCTGGAGGCACCTCCAGCAACCTGTaGATAACGGGTGCTTCCCCA +
Preference number: 4 (lower is better)
Translates to: GWHGRVGSMPSQGCQAGGTSSNL*ITGASP
Trigger: TGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGT...GCCTCCAGCCTGGCATCCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp ACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGTGGTGCCCTGGCTGTGGCTTaGAGAGCATCTGGAGGCTTC +
Preference number: 4 (lower is better)
Translates to: TCSCGQAPIESYLSTLRGALAVA*RASGGF
Trigger: GAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGC...ACCACGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp CCAACCTGGCAGGGGGCACATGGCAGGCACTGCAGGGTTGGCACGGCAGGGTTGAGCAAAGGTGGACAGTaGCAGCAGTGGAGACAGATG +
Preference number: 4 (lower is better)
Translates to: PTWQGAHGRHCRVGTAGLSKGGQ*QQWRQM
Trigger: CATCTGTCTCCACTGCTGTCACTGTCCACCTTTGCT...CAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCCAGGTTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp ACCTGGCAGGGGGCACATGGCAGGCACTGCAGGGTTGGCACGGCAGGGTTGGCTGGAGATGGATGTGGGTaGATCAATGAAGGGCACACC +
Preference number: 4 (lower is better)
Translates to: TWQGAHGRHCRVGTAGLAGDGCG*INEGHT
Trigger: GGTGTGCCCTTCATTGATGCACCCACATCCATCTCC...AGCCAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCCAGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp TGGCAGGGGGCACATGGCAGGCACTGCAGGGTTGGCACGGCAGGGTTGGCTCTACCCCGTACACTGGACTaGTCAGGACCACTCAATGTC +
Preference number: 4 (lower is better)
Translates to: WQGAHGRHCRVGTAGLALPRTLD*SGPLNV
Trigger: GACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGG...TAGAGCCAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp GGCAGGGGGCACATGGCAGGCACTGCAGGGTTGGCACGGCAGGGTTGGCTCTATGCCTTCATGAGCTCCTaGAGTGATTCCAGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: GRGHMAGTAGLARQGWLYAFMSS*SDSSWR
Trigger: CCTCCAGCTGGAATCACTGCAGGAGCTCATGAAGGC...ATAGAGCCAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp CTGGGCTTGGCTCTAATGCCCAACCTGGCAGGGGGCACATGGCAGGCACTGCAGCCGATCGGTGTATCTTaGCAGGCCTGCCATGGTCTG +
Preference number: 4 (lower is better)
Translates to: LGLALMPNLAGGTWQALQPIGVS*QACHGL
Trigger: CAGACCATGGCAGGCCTGGCAAGATACACCGATCGG...CTGCAGTGCCTGCCATGTGCCCCCTGCCAGGTTGGGCATTAGAGCCAAGCCCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp GGCAGGGGGCACATGGCAGGCACTGCAGGGTTGGCACGGCAGGGTTGGCTCTATTTGACTCTCCTCGGTTaGATGGTGTCTCCTCCCGCT +
Preference number: 4 (lower is better)
Translates to: GRGHMAGTAGLARQGWLYLTLLG*MVSPPA
Trigger: AGCGGGAGGAGACACCATCCAACCGAGGAGAGTCAA...ATAGAGCCAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp CCAACCTGGCAGGGGGCACATGGCAGGCACTGCAGGGTTGGCACGGCAGGGTTGACTGTAAGGCTGTACTaGTTGACCAGGGGTGAAGGG +
Preference number: 4 (lower is better)
Translates to: PTWQGAHGRHCRVGTAGLTVRLY*LTRGEG
Trigger: CCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGT...CAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCCAGGTTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp ACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGTGGTGGACTTAGTGTCGTGTaGGCCCAGATCCAGGCCCAC +
Preference number: 4 (lower is better)
Translates to: TCSCGQAPIESYLSTLRGGLSVV*AQIQAH
Trigger: GTGGGCCTGGATCTGGGCCCACACGACACTAAGTCC...ACCACGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp TCCCACTCCAGGGCATCTAGCTTCTGTAGGTCATGCACCAGAAGGGCTCGCTGCGCCTGCATCCGTACCTaGCGCCGGGCGTCACAGCAT +
Preference number: 4 (lower is better)
Translates to: SHSRASSFCRSCTRRARCACIRT*RRASQH
Trigger: ATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGC...GCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175747.2
CDS-3UTR CCA 90 bp GGACTGAGGGGACTGGATAGAGAGGAACAAAGTGCAGAGTGGCTGGGCTTGGCTGGGCTGCAGGATCAGTaGGGGCTGGGTCAGTGGGGG +
Preference number: 4 (lower is better)
Translates to: GLRGLDREEQSAEWLGLAGLQDQ*GLGQWG
Trigger: CCCCCACTGACCCAGCCCCCACTGATCCTGCAGCCC...AGCCAAGCCCAGCCACTCTGCACTTTGTTCCTCTCTATCCAGTCCCCTCAGTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp ACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGTGGTGGACTCCACCGATGCTaGCTGGGCCTTCTCTACATG +
Preference number: 4 (lower is better)
Translates to: TCSCGQAPIESYLSTLRGGLHRC*LGLLYM
Trigger: CATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCC...ACCACGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp GGCAGGGGGCACATGGCAGGCACTGCAGGGTTGGCACGGCAGGGTTGGCTCTATTGGACAGCAGCTTGGTaGGGTCTTCAAAGAGGTTGG +
Preference number: 4 (lower is better)
Translates to: GRGHMAGTAGLARQGWLYWTAAW*GLQRGW
Trigger: CCAACCTCTTTGAAGACCTCACCAAGCTGCTGTCCA...ATAGAGCCAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp AGGGTTGGCACGGCAGGGTTGGCTCTATGCCTTCCCAGGGATGCCAGGCTGGAGGAGGTGGCTTCCTGGTaGACTTTTTGTCAGCCCCAG +
Preference number: 4 (lower is better)
Translates to: RVGTAGLALCLPRDARLEEVASW*TFCQPQ
Trigger: CTGGGGCTGACAAAAAGTTCACCAGGAAGCCACCTC...CTCCAGCCTGGCATCCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp ACCTGGCAGGGGGCACATGGCAGGCACTGCAGGGTTGGCACGGCAGGGTTGGCTCTAACCAACCACTGTTaGCCATGTCAGCATCTGTGG +
Preference number: 4 (lower is better)
Translates to: TWQGAHGRHCRVGTAGLALTNHC*PCQHLW
Trigger: CCACAGATGCTGACATGGTCAACAGTGGTTGGTTAG...AGCCAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCCAGGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp CCAACCTGGCAGGGGGCACATGGCAGGCACTGCAGGGTTGGCACGGCAGGGTTGCCAGTGGTATATGGGTaGTCCATCGGGCATTTCGTT +
Preference number: 4 (lower is better)
Translates to: PTWQGAHGRHCRVGTAGLPVVYG*SIGHFV
Trigger: AACGAAATGCCCGATGGAGCACCCATATACCACTGG...CAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCCAGGTTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp GGCCCAGGACTGAGGGGACTGGATAGAGAGGAACAAAGTGCAGAGTGGCTGGGCAAGCGCCCATCTCACTaGTCCCAGGCTCACTGGTGG +
Preference number: 4 (lower is better)
Translates to: GPGLRGLDREEQSAEWLGKRPSH*SQAHWW
Trigger: CCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTT...GCCCAGCCACTCTGCACTTTGTTCCTCTCTATCCAGTCCCCTCAGTCCTGGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp CTGGGCTTGGCTCTAATGCCCAACCTGGCAGGGGGCACATGGCAGGCACTGCAGGCTGTGCCTTCTTTCTaGGAGGACTGGGTAAAGCGC +
Preference number: 4 (lower is better)
Translates to: LGLALMPNLAGGTWQALQAVPSF*EDWVKR
Trigger: GCGCTTTACCCAGTCCTCCCAGAAAGAAGGCACAGC...CTGCAGTGCCTGCCATGTGCCCCCTGCCAGGTTGGGCATTAGAGCCAAGCCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp GGCACTGCAGGGTTGGCACGGCAGGGTTGGCTCTATGCCTTCCCAGGGATGCCAATGGACCCCGTACACTaGACTGCTCAGGACCACTCA +
Preference number: 4 (lower is better)
Translates to: GTAGLARQGWLYAFPGMPMDPVH*TAQDHS
Trigger: TGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCAT...TGGCATCCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACCCTGCAGTGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp GGCAGGGGGCACATGGCAGGCACTGCAGGGTTGGCACGGCAGGGTTGGCTCTATCAGTCATCACCCGAGTaGATGTTGGCAGCATTGGTC +
Preference number: 4 (lower is better)
Translates to: GRGHMAGTAGLARQGWLYQSSPE*MLAALV
Trigger: GACCAATGCTGCCAACATCCACTCGGGTGATGACTG...ATAGAGCCAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp ATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGTCTGGGAGAGGTGGATaGCCAGGCATCCTGGGGTCA +
Preference number: 4 (lower is better)
Translates to: MYMLLWAGPHRVLSVHPPSGRGG*PGILGS
Trigger: TGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGA...CGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp GGCACTGCAGGGTTGGCACGGCAGGGTTGGCTCTATGCCTTCCCAGGGATGCCATGTCGAGGCAGCTTCTaGACTTGCAGAGGAGATGGA +
Preference number: 4 (lower is better)
Translates to: GTAGLARQGWLYAFPGMPCRGSF*TCRGDG
Trigger: TCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACA...TGGCATCCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACCCTGCAGTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp ACTCCAGGGCATCTAGCTTCTGTAGGTCATGCACCAGAAGGGCTCGCTGCAGATCTGGTTGACCAGGGGTaGAGGGCCTGGCCTGCTGAG +
Preference number: 4 (lower is better)
Translates to: TPGHLASVGHAPEGLAADLVDQG*RAWPAE
Trigger: CTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAG...ATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175747.2
CDS-3UTR GCA 90 bp GGCCCAGGACTGAGGGGACTGGATAGAGAGGAACAAAGTGCAGAGTGGCTGGGCCACTGGCAGGATCTGTaGCCACAAAACGGGCGTGAG +
Preference number: 4 (lower is better)
Translates to: GPGLRGLDREEQSAEWLGHWQDL*PQNGRE
Trigger: CTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTG...GCCCAGCCACTCTGCACTTTGTTCCTCTCTATCCAGTCCCCTCAGTCCTGGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp CTGGGCTTGGCTCTAATGCCCAACCTGGCAGGGGGCACATGGCAGGCACTGCAGCCTGTGAATAACGGGTaGTTCCCCAGGCAAACGGAA +
Preference number: 4 (lower is better)
Translates to: LGLALMPNLAGGTWQALQPVNNG*FPRQTE
Trigger: TTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGG...CTGCAGTGCCTGCCATGTGCCCCCTGCCAGGTTGGGCATTAGAGCCAAGCCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp ACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGTGGTCGGACCAGACCTGTCTaGTCCTCAGGCATCACAATC +
Preference number: 4 (lower is better)
Translates to: TCSCGQAPIESYLSTLRGRTRPV*SSGITI
Trigger: GATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCG...ACCACGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp AAGTGCAGAGTGGCTGGGCTTGGCTCTAATGCCCAACCTGGCAGGGGGCACATGACCAGAAGGGCTCGCTaGAGATATGTCAGGGCCTGC +
Preference number: 4 (lower is better)
Translates to: KCRVAGLGSNAQPGRGHMTRRAR*RYVRAC
Trigger: GCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGT...CATGTGCCCCCTGCCAGGTTGGGCATTAGAGCCAAGCCCAGCCACTCTGCACTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp ACCTGGCAGGGGGCACATGGCAGGCACTGCAGGGTTGGCACGGCAGGGTTGGCTTCATCCAGTGGTATATaGGTGCTCCATCGGGCATTT +
Preference number: 4 (lower is better)
Translates to: TWQGAHGRHCRVGTAGLASSSGI*VLHRAF
Trigger: AAATGCCCGATGGAGCACCCATATACCACTGGATGA...AGCCAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCCAGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp GCCAGGCTGGAGGCAGAGGCTACAGGTTCTGCCTGCATCCACTCTCAGTTTGGAAAGAGGGTCTGGCACTaGGCCACAGGCGCTGACTCA +
Preference number: 4 (lower is better)
Translates to: ARLEAEATGSACIHSQFGKRVWH*ATGADS
Trigger: TGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTT...TCCAAACTGAGAGTGGATGCAGGCAGAACCTGTAGCCTCTGCCTCCAGCCTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp GGCAGGGGGCACATGGCAGGCACTGCAGGGTTGGCACGGCAGGGTTGGCTCTATACTCTCTTGGCCTCTTaGTTCTCTGTAGATGGACCC +
Preference number: 4 (lower is better)
Translates to: GRGHMAGTAGLARQGWLYTLLAS*FSVDGP
Trigger: GGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGT...ATAGAGCCAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp ACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGTGGTCATCAGCCCTGGCTGTaGCTTGAAGAGCATCTGGAG +
Preference number: 4 (lower is better)
Translates to: TCSCGQAPIESYLSTLRGHQPWL*LEEHLE
Trigger: CTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGATG...ACCACGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp ACCTGGCAGGGGGCACATGGCAGGCACTGCAGGGTTGGCACGGCAGGGTTGGCTATTTTGATGGTAGGATaGGAGCTCACTGTCCGACTG +
Preference number: 4 (lower is better)
Translates to: TWQGAHGRHCRVGTAGLAILMVG*ELTVRL
Trigger: CAGTCGGACAGTGAGCTCCCATCCTACCATCAAAAT...AGCCAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCCAGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp TATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGATGGCCAGGCATCCTaGGGTCACCAGCAGCAGAAG +
Preference number: 4 (lower is better)
Translates to: YVHAPVGRPPSSPICPPSDGQAS*GHQQQK
Trigger: CTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATC...GGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp AGGGTTGGCACGGCAGGGTTGGCTCTATGCCTTCCCAGGGATGCCAGGCTGGAGCGAAGGATGTCACCATaGCGATGGGCCAAATGGAAT +
Preference number: 4 (lower is better)
Translates to: RVGTAGLALCLPRDARLERRMSP*RWAKWN
Trigger: ATTCCATTTGGCCCATCGTCATGGTGACATCCTTCG...CTCCAGCCTGGCATCCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp CTGGGCTTGGCTCTAATGCCCAACCTGGCAGGGGGCACATGGCAGGCACTGCAGTTCATCTGGTGTCACTaGGACCAGAGCCTTCATGAG +
Preference number: 4 (lower is better)
Translates to: LGLALMPNLAGGTWQALQFIWCH*DQSLHE
Trigger: CTCATGAAGGCTCTGGTCTCAGTGACACCAGATGAA...CTGCAGTGCCTGCCATGTGCCCCCTGCCAGGTTGGGCATTAGAGCCAAGCCCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp GGCCCAGGACTGAGGGGACTGGATAGAGAGGAACAAAGTGCAGAGTGGCTGGGCTGCACTCCAGCAATGTaGAGAGGGTGGCCCAGTCAT +
Preference number: 4 (lower is better)
Translates to: GPGLRGLDREEQSAEWLGCTPAM*RGWPSH
Trigger: ATGACTGGGCCACCCTCTTCACATTGCTGGAGTGCA...GCCCAGCCACTCTGCACTTTGTTCCTCTCTATCCAGTCCCCTCAGTCCTGGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp GGCAGGGGGCACATGGCAGGCACTGCAGGGTTGGCACGGCAGGGTTGGCTCTATTCTTCCAGGATGTCTTaGTCAAAGTCCTTGCCTCCA +
Preference number: 4 (lower is better)
Translates to: GRGHMAGTAGLARQGWLYSSRMS*SKSLPP
Trigger: TGGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGA...ATAGAGCCAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp TACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGTGGCGTGTGTGCAGGGTATaGATCAGGTCTAGCAAGTCC +
Preference number: 4 (lower is better)
Translates to: YMLLWAGPHRVLSVHPPWRVCRV*IRSSKS
Trigger: GGACTTGCTAGACCTGATGCATACCCTGCACACACG...CCACGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp AGGGTTGGCACGGCAGGGTTGGCTCTATGCCTTCCCAGGGATGCCAGGCTGGAGGGACAACTTCATCACTaGCAGGATCTGTGCCCACAA +
Preference number: 4 (lower is better)
Translates to: RVGTAGLALCLPRDARLEGQLHH*QDLCPQ
Trigger: TTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCC...CTCCAGCCTGGCATCCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp AGGGTTGGCACGGCAGGGTTGGCTCTATGCCTTCCCAGGGATGCCAGGCTGGAGCTAACACTTCAGGGATaGACTCCACCGATGCTGACT +
Preference number: 4 (lower is better)
Translates to: RVGTAGLALCLPRDARLELTLQG*TPPMLT
Trigger: AGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAG...CTCCAGCCTGGCATCCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp CTGGGCTTGGCTCTAATGCCCAACCTGGCAGGGGGCACATGGCAGGCACTGCAGCTCTGGACAGCACGCTaGGCTTCATCAGTAACAAGA +
Preference number: 4 (lower is better)
Translates to: LGLALMPNLAGGTWQALQLWTAR*ASSVTR
Trigger: TCTTGTTACTGATGAAGCCCAGCGTGCTGTCCAGAG...CTGCAGTGCCTGCCATGTGCCCCCTGCCAGGTTGGGCATTAGAGCCAAGCCCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp CAGTTTGGAAGCTCAGGAATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGAGTGGCCTGCATCCGTACCTaGCGCCGGGCGTCACAGCAT +
Preference number: 4 (lower is better)
Translates to: QFGSSGMNGRGRVSQPGVACIRT*RRASQH
Trigger: ATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGC...CACTCCAGGCTGCGAGACTCTTCCTCTGCCATTCATTCCTGAGCTTCCAAACTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp ATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGGCAGGCATGGGGTCCTaGATGACAGTCTGCTTGAAG +
Preference number: 4 (lower is better)
Translates to: MYMLLWAGPHRVLSVHPPAGMGS*MTVCLK
Trigger: CTTCAAGCAGACTGTCATCCAGGACCCCATGCCTGC...CGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp GGTTGGCACGGCAGGGTTGGCTCTATGCCTTCCCAGGGATGCCAGGCTGGAGGCATCGGGCATTTCGTTTaGTGGCACCAACAACAATGT +
Preference number: 4 (lower is better)
Translates to: GWHGRVGSMPSQGCQAGGIGHFV*WHQQQC
Trigger: ACATTGTTGTTGGTGCCATCAAACGAAATGCCCGAT...GCCTCCAGCCTGGCATCCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp ATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGCAAAACGGGCGTGAGTaGCAGCATCTGCCATGTTCT +
Preference number: 4 (lower is better)
Translates to: MYMLLWAGPHRVLSVHPPQNGRE*QHLPCS
Trigger: AGAACATGGCAGATGCTGTCACTCACGCCCGTTTTG...CGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp GAGGAAGAGTCTCGCAGCCTGGAGTGGATCCCAGCAGGGACTATAAAAGTTGTCCAGGCTCACTGGTGGTaGTCTCCCTTGGGGAGCCAG +
Preference number: 4 (lower is better)
Translates to: EEESRSLEWIPAGTIKVVQAHWW*SPLGSQ
Trigger: CTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTG...GACAACTTTTATAGTCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTTCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp ATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGCAAAGTTGTCAGGGGTaGTGTGAGCAGCATCTCGGA +
Preference number: 4 (lower is better)
Translates to: MYMLLWAGPHRVLSVHPPQSCQG*CEQHLG
Trigger: TCCGAGATGCTGCTCACATCACCCCTGACAACTTTG...CGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp AGGGTTGGCACGGCAGGGTTGGCTCTATGCCTTCCCAGGGATGCCAGGCTGGAGCTAGCAAGTCCTGACTaGCCTGTAAAGACACCGTAT +
Preference number: 4 (lower is better)
Translates to: RVGTAGLALCLPRDARLELASPD*PVKTPY
Trigger: ATACGGTGTCTTTACAGGTCAGTCAGGACTTGCTAG...CTCCAGCCTGGCATCCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp CATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTGGCCCAGAGGGTGCGTaGGTCAGCTTCAATCTTCTG +
Preference number: 4 (lower is better)
Translates to: HMYMLLWAGPHRVLSVHPGPEGA*VSFNLL
Trigger: CAGAAGATTGAAGCTGACTCACGCACCCTCTGGGCC...AGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp ACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGTGGTCTTGTGAAGAGCAGCTaGACCATGTCTACCAGAGTG +
Preference number: 4 (lower is better)
Translates to: TCSCGQAPIESYLSTLRGLVKSS*TMSTRV
Trigger: CACTCTGGTAGACATGGTGCAGCTGCTCTTCACAAG...ACCACGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp ACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGTGGTGCCACTGTCAGCAAATaGAGTCCCATGTGGATCATC +
Preference number: 4 (lower is better)
Translates to: TCSCGQAPIESYLSTLRGATVSK*SPMWII
Trigger: GATGATCCACATGGGACTGCATTTGCTGACAGTGGC...ACCACGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp CTCTCAGTTTGGAAGCTCAGGAATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGCCCTCCAGGTGGCGTTaGTCCTCTGCCCATGAGCTG +
Preference number: 4 (lower is better)
Translates to: LSVWKLRNEWQRKSLAAWPSRWR*SSAHEL
Trigger: CAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGG...CCAGGCTGCGAGACTCTTCCTCTGCCATTCATTCCTGAGCTTCCAAACTGAGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp ATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGGGGGCCTCCTCCTCTTaGATCTGCACTGTGGAAAAT +
Preference number: 4 (lower is better)
Translates to: MYMLLWAGPHRVLSVHPPGASSS*ICTVEN
Trigger: ATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCC...CGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp GGCACTGCAGGGTTGGCACGGCAGGGTTGGCTCTATGCCTTCCCAGGGATGCCATCTGTTTCTTCCACTTaGACGAGTCACTCATGCCTC +
Preference number: 4 (lower is better)
Translates to: GTAGLARQGWLYAFPGMPSVSST*TSHSCL
Trigger: GAGGCATGAGTGACTCGTCCAAGTGGAAGAAACAGA...TGGCATCCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACCCTGCAGTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp ATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGCAACCATCCTCCACTTaGAAAATGAAGGCCTCGGGC +
Preference number: 4 (lower is better)
Translates to: MYMLLWAGPHRVLSVHPPQPSST*KMKASG
Trigger: GCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTG...CGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp TATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCCCATATGCAACCTGGTaGCTGACTCTGGACAGCACG +
Preference number: 4 (lower is better)
Translates to: YVHAPVGRPPSSPICPPSPYATW*LTLDST
Trigger: CGTGCTGTCCAGAGTCAGCCACCAGGTTGCATATGG...GGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp GAGGAAGAGTCTCGCAGCCTGGAGTGGATCCCAGCAGGGACTATAAAAGTTGTCCCACCTCCCTCCAGGTaGCGTTGCTCCTCTGCCCAT +
Preference number: 4 (lower is better)
Translates to: EEESRSLEWIPAGTIKVVPPPSR*RCSSAH
Trigger: ATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGG...GACAACTTTTATAGTCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTTCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp CATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCTTTGAGAGCAGTGTaGAAGCCCGCATCCGGGTCT +
Preference number: 4 (lower is better)
Translates to: HMYMLLWAGPHRVLSVHPPLRAV*KPASGS
Trigger: AGACCCGGATGCGGGCTTCCACACTGCTCTCAAAGG...AGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
3UTR CAA 72 bp CTGGATAGAGAGGAACAAAGTGCAGAGTGGCTGGGCTaGGCTCTAATGCCCAACCTGGCAGGGGGCACATGG +
Preference number: 4 (lower is better)
Translates to: LDREEQSAEWLG*ALMPNLAGGTW
Trigger: CCATGTGCCCCCTGCCAGGTTGGGCATTAGAGCCAAGCCCAGCCACTCTGCACTTTGTTCCTCTCTATCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp GGCACTGCAGGGTTGGCACGGCAGGGTTGGCTCTATGCCTTCCCAGGGATGCCAAGAGTTCGGAGAACCTaGAGGATTTTCATCAGGACA +
Preference number: 4 (lower is better)
Translates to: GTAGLARQGWLYAFPGMPRVRRT*RIFIRT
Trigger: TGTCCTGATGAAAATCCTTCAGGTTCTCCGAACTCT...TGGCATCCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACCCTGCAGTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp CAGCCCCTGAGACTGAAGCAGAGTCTTGAACGCCTGATAGGAAGGAATGGTCCTATGCAACCTGGTGGCTaGCTCTGGACAGCACGCTGG +
Preference number: 4 (lower is better)
Translates to: QPLRLKQSLERLIGRNGPMQPGG*LWTARW
Trigger: CCAGCGTGCTGTCCAGAGTCAGCCACCAGGTTGCAT...AGGACCATTCCTTCCTATCAGGCGTTCAAGACTCTGCTTCAGTCTCAGGGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp TATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGTCTGTGTAGACTTCTaGGTCGGAAGTGTACCCTCG +
Preference number: 4 (lower is better)
Translates to: YVHAPVGRPPSSPICPPSVCVDF*VGSVPS
Trigger: CGAGGGTACACTTCCGACTCAGAAGTCTACACAGAC...GGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp AAAAGTCCACCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCCTGGTTGACCAGGGGTaGAGGGCCTGGCCTGCTGAG +
Preference number: 4 (lower is better)
Translates to: KSPPLSFSICTCSCGQAPLVDQG*RAWPAE
Trigger: CTCAGCAGGCCAGGCCCTTCACCCCTGGTCAACCAG...GGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGGTGGACTTTT
57% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp TACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGTGGGACAATGAAGGACAGTaGCTCCACACACTTAAGCAG +
Preference number: 4 (lower is better)
Translates to: YMLLWAGPHRVLSVHPPWDNEGQ*LHTLKQ
Trigger: CTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTC...CCACGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp TCCCACTCCAGGGCATCTAGCTTCTGTAGGTCATGCACCAGAAGGGCTCGCTGCCAAAGTTGTCAGGGGTaGTGTGAGCAGCATCTCGGA +
Preference number: 4 (lower is better)
Translates to: SHSRASSFCRSCTRRARCQSCQG*CEQHLG
Trigger: TCCGAGATGCTGCTCACATCACCCCTGACAACTTTG...GCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175747.2
CDS-3UTR TCA 90 bp ATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGAGGTCTAGCAAGTCCTaGCTGACCTGTAAAGACACC +
Preference number: 4 (lower is better)
Translates to: MYMLLWAGPHRVLSVHPPRSSKS*LTCKDT
Trigger: GGTGTCTTTACAGGTCAGTCAGGACTTGCTAGACCT...CGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp ATGGCAGAGGAAGAGTCTCGCAGCCTGGAGTGGATCCCAGCAGGGACTATAAAAGAGGCCAGAGGTTTTTaGCTGTGCGGTTCCGCAGGC +
Preference number: 4 (lower is better)
Translates to: MAEEESRSLEWIPAGTIKEARGF*LCGSAG
Trigger: GCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTC...TTTTATAGTCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTTCCTCTGCCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp GGCCCAGGACTGAGGGGACTGGATAGAGAGGAACAAAGTGCAGAGTGGCTGGGCTGGGCTCGGAAAAGCTaGAACATGGCCTCCATGATA +
Preference number: 4 (lower is better)
Translates to: GPGLRGLDREEQSAEWLGWARKS*NMASMI
Trigger: TATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCA...GCCCAGCCACTCTGCACTTTGTTCCTCTCTATCCAGTCCCCTCAGTCCTGGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp GGACTGAGGGGACTGGATAGAGAGGAACAAAGTGCAGAGTGGCTGGGCTTGGCTGCTGTAGATAGAGGCTaGCCGTGTGTGCAGGGTATG +
Preference number: 4 (lower is better)
Translates to: GLRGLDREEQSAEWLGLAAVDRG*PCVQGM
Trigger: CATACCCTGCACACACGGGCAGCCTCTATCTACAGC...AGCCAAGCCCAGCCACTCTGCACTTTGTTCCTCTCTATCCAGTCCCCTCAGTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp CATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTAGTGGGCCCAGAGGGTaGGTGAGTCAGCTTCAATCT +
Preference number: 4 (lower is better)
Translates to: HMYMLLWAGPHRVLSVHPSGPRG*VSQLQS
Trigger: AGATTGAAGCTGACTCACGCACCCTCTGGGCCCACT...AGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp AAGTGCAGAGTGGCTGGGCTTGGCTCTAATGCCCAACCTGGCAGGGGGCACATGAGTGGAGACAGATGCTaGAGGAAGACCTTTGAGAGC +
Preference number: 4 (lower is better)
Translates to: KCRVAGLGSNAQPGRGHMSGDRC*RKTFES
Trigger: GCTCTCAAAGGTCTTCCTGCAGCATCTGTCTCCACT...CATGTGCCCCCTGCCAGGTTGGGCATTAGAGCCAAGCCCAGCCACTCTGCACTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp ACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGTGGTGTTATGGCGGTCGTGTaGATTTGTGAGGGAGATAAG +
Preference number: 4 (lower is better)
Translates to: TCSCGQAPIESYLSTLRGVMAVV*ICEGDK
Trigger: CTTATCTCCCTCACAAATCCACACGACCGCCATAAC...ACCACGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp GGCACTGCAGGGTTGGCACGGCAGGGTTGGCTCTATGCCTTCCCAGGGATGCCATCTTTCTTCTCTTGCTaGTTGAGGGTGTTGAGGACT +
Preference number: 4 (lower is better)
Translates to: GTAGLARQGWLYAFPGMPSFFSC*LRVLRT
Trigger: AGTCCTCAACACCCTCAACCAGCAAGAGAAGAAAGA...TGGCATCCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACCCTGCAGTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp TCCAGGGCATCTAGCTTCTGTAGGTCATGCACCAGAAGGGCTCGCTGCAGATATGGACTTAGTGTCGTGTaGGCCCAGATCCAGGCCCAC +
Preference number: 4 (lower is better)
Translates to: SRASSFCRSCTRRARCRYGLSVV*AQIQAH
Trigger: GTGGGCCTGGATCTGGGCCCACACGACACTAAGTCC...ATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175747.2
CDS-3UTR CCA 90 bp CGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTAAAGGGCACCAGCAGTaGGCCCAGAGGGTGCGTGAG +
Preference number: 4 (lower is better)
Translates to: RYHFPYVHAPVGRPPSSPKGHQQ*AQRVRE
Trigger: CTCACGCACCCTCTGGGCCCACTGCTGGTGCCCTTT...AGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp ATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGCTTGCATCTGCACTGTaGAAAATCTCCGCTGTGTCC +
Preference number: 4 (lower is better)
Translates to: MYMLLWAGPHRVLSVHPPLASAL*KISAVS
Trigger: GGACACAGCGGAGATTTTCCACAGTGCAGATGCAAG...CGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp CTGGGCTTGGCTCTAATGCCCAACCTGGCAGGGGGCACATGGCAGGCACTGCAGGGTTCTTCTTTAAACTaGGGTAACCTTGTGAAGAGC +
Preference number: 4 (lower is better)
Translates to: LGLALMPNLAGGTWQALQGSSLN*GNLVKS
Trigger: GCTCTTCACAAGGTTACCTCAGTTTAAAGAAGAACC...CTGCAGTGCCTGCCATGTGCCCCCTGCCAGGTTGGGCATTAGAGCCAAGCCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp CCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTGGGGTGGGCAGCTCTaGACCTGGTGTGACTTTGGT +
Preference number: 4 (lower is better)
Translates to: PLSFSICTCSCGQAPIESWGGQL*TWCDFG
Trigger: ACCAAAGTCACACCAGGTTCAGAGCTGCCCACCCCA...GGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp AAGTGCAGAGTGGCTGGGCTTGGCTCTAATGCCCAACCTGGCAGGGGGCACATGCACAGGTGGTATAGATaGTCTCGAACAGTCTGCCAT +
Preference number: 4 (lower is better)
Translates to: KCRVAGLGSNAQPGRGHMHRWYR*SRTVCH
Trigger: ATGGCAGACTGTTCGAGATCATCTATACCACCTGTG...CATGTGCCCCCTGCCAGGTTGGGCATTAGAGCCAAGCCCAGCCACTCTGCACTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp CAGTTTGGAAGCTCAGGAATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGAGTGGTTGACAGAGGTGAGTaGCAGGCCGGTGATAGGACC +
Preference number: 4 (lower is better)
Translates to: QFGSSGMNGRGRVSQPGVVDRGE*QAGDRT
Trigger: GGTCCTATCACCGGCCTGGCACTCACCTCTGTCAAC...CACTCCAGGCTGCGAGACTCTTCCTCTGCCATTCATTCCTGAGCTTCCAAACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp ACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGTGGTACTTATGACTCTTGCTaGGTTTATCCTGGGACTTGC +
Preference number: 4 (lower is better)
Translates to: TCSCGQAPIESYLSTLRGTYDSC*VYPGTC
Trigger: GCAAGTCCCAGGATAAACGCAGCAAGAGTCATAAGT...ACCACGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp CCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCGAGGCCGAGTCAGAGTaGTCAGCAGGGGATGTGCAT +
Preference number: 4 (lower is better)
Translates to: PLSFSICTCSCGQAPIESEAESE*SAGDVH
Trigger: ATGCACATCCCCTGCTGACCACTCTGACTCGGCCTC...GGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp CTCTCAGTTTGGAAGCTCAGGAATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGTCTTTCTGGGAGGACTaGGTAAAGCGCACGCCCCGA +
Preference number: 4 (lower is better)
Translates to: LSVWKLRNEWQRKSLAAWSFWED*VKRTPR
Trigger: TCGGGGCGTGCGCTTTACCCAGTCCTCCCAGAAAGA...CCAGGCTGCGAGACTCTTCCTCTGCCATTCATTCCTGAGCTTCCAAACTGAGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp ATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGATCACCTCAGAGTTATaGCGGTCGTGTGGATTTGTG +
Preference number: 4 (lower is better)
Translates to: MYMLLWAGPHRVLSVHPPITSEL*RSCGFV
Trigger: CACAAATCCACACGACCGCCATAACTCTGAGGTGAT...CGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp CTGAGACTGAAGCAGAGTCTTGAACGCCTGATAGGAAGGAATGGTCCTGATCTCAGACCCAAGAGGGTCTaGCACTGGGCCACAGGCGCT +
Preference number: 4 (lower is better)
Translates to: LRLKQSLERLIGRNGPDLRPKRV*HWATGA
Trigger: AGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCT...GAGATCAGGACCATTCCTTCCTATCAGGCGTTCAAGACTCTGCTTCAGTCTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp AAGTGCAGAGTGGCTGGGCTTGGCTCTAATGCCCAACCTGGCAGGGGGCACATGCCTCAAAGCCAGGTCTaGCTGTCTCTTTCTTCTCTT +
Preference number: 4 (lower is better)
Translates to: KCRVAGLGSNAQPGRGHMPQSQV*LSLSSL
Trigger: AAGAGAAGAAAGAGACAGCCAGACCTGGCTTTGAGG...CATGTGCCCCCTGCCAGGTTGGGCATTAGAGCCAAGCCCAGCCACTCTGCACTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp ATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGACCCACCATTCAGACTaGCTTCTACAAAGATGCGGA +
Preference number: 4 (lower is better)
Translates to: MYMLLWAGPHRVLSVHPPTHHSD*LLQRCG
Trigger: TCCGCATCTTTGTAGAAGCCAGTCTGAATGGTGGGT...CGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp ATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGAGTGGATCCCAGCAGGGACTATTCTGCTGTGCCCTCATaGGTTGGATCTATGAGTGCG +
Preference number: 4 (lower is better)
Translates to: MNGRGRVSQPGVDPSRDYSAVPS*VGSMSA
Trigger: CGCACTCATAGATCCAACTCATGAGGGCACAGCAGA...ATAGTCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTTCCTCTGCCATTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp TATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCAGATGGCTTTCTGGATaGTGGTCTCCTCAAGGCTTT +
Preference number: 4 (lower is better)
Translates to: YVHAPVGRPPSSPICPPSRWLSG*WSPQGF
Trigger: AAAGCCTTGAGGAGACCATCATCCAGAAAGCCATCT...GGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp CAGTTTGGAAGCTCAGGAATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGAGTGTGTCAAACACATCGCTaGGGCCATAGTGGGCGGAGA +
Preference number: 4 (lower is better)
Translates to: QFGSSGMNGRGRVSQPGVCQTHR*GHSGRR
Trigger: TCTCCGCCCACTATGGCCTCAGCGATGTGTTTGACA...CACTCCAGGCTGCGAGACTCTTCCTCTGCCATTCATTCCTGAGCTTCCAAACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp TTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCGCAACATGGCCTCCATaGTATTCTTCCAGCCCTCCC +
Preference number: 4 (lower is better)
Translates to: FSICTCSCGQAPIESYLSATWPP*YSSSPP
Trigger: GGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGC...GGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp ACTCCAGGGCATCTAGCTTCTGTAGGTCATGCACCAGAAGGGCTCGCTGCAGATTTGTCAGGGGTGATGTaGGCAGCATCTCGGACAATG +
Preference number: 4 (lower is better)
Translates to: TPGHLASVGHAPEGLAADLSGVM*AASRTM
Trigger: CATTGTCCGAGATGCTGCTCACATCACCCCTGACAA...ATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175747.2
CDS-3UTR TCA 90 bp TATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCCCACATCTGCAGGGCTaGTATTTTCCAAAAGCTTGG +
Preference number: 4 (lower is better)
Translates to: YVHAPVGRPPSSPICPPSPHLQG*YFPKAW
Trigger: CCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGG...GGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp GAGTCCTATCTGTCCACCCTCCGTGGTGCCAAGCAACTCCAAGCTGACCAACTACCATGCCCTCTGCTGTaGCCTCATGAGTTGGATCTA +
Preference number: 4 (lower is better)
Translates to: ESYLSTLRGAKQLQADQLPCPLL*PHELDL
Trigger: TAGATCCAACTCATGAGGGCACAGCAGAGGGCATGG...TAGTTGGTCAGCTTGGAGTTGCTTGGCACCACGGAGGGTGGACAGATAGGACTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp CCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCGTTCTCCATGCCCTCTaGTGTGCCCTCATGAGTTGG +
Preference number: 4 (lower is better)
Translates to: PLSFSICTCSCGQAPIESVLHAL*CALMSW
Trigger: CCAACTCATGAGGGCACAGCAGAGGGCATGGAGAAC...GGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp CTGTCCACCCTCCGTGGTGCCAAGCAACTCCAAGCTGACCAACTATTTAATGAACTTGGGGAGCCAGCTTaGTCCAGGTCAGTGAGGTCC +
Preference number: 4 (lower is better)
Translates to: LSTLRGAKQLQADQLFNELGEPA*SRSVRS
Trigger: GGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAG...TTCATTAAATAGTTGGTCAGCTTGGAGTTGCTTGGCACCACGGAGGGTGGACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp GGCCCAGGACTGAGGGGACTGGATAGAGAGGAACAAAGTGCAGAGTGGCTGGGCGAATACTGTCTTGGCTaGTATGTGGGCTTTAGGGTT +
Preference number: 4 (lower is better)
Translates to: GPGLRGLDREEQSAEWLGEYCLG*YVGFRV
Trigger: AACCCTAAAGCCCACATAGCAGCCAAGACAGTATTC...GCCCAGCCACTCTGCACTTTGTTCCTCTCTATCCAGTCCCCTCAGTCCTGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp CTGGGCTTGGCTCTAATGCCCAACCTGGCAGGGGGCACATGGCAGGCACTGCAGGAGAGATCTTGCCATTaGGATCCACAAAATCTTCTA +
Preference number: 4 (lower is better)
Translates to: LGLALMPNLAGGTWQALQERSCH*DPQNLL
Trigger: TAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTC...CTGCAGTGCCTGCCATGTGCCCCCTGCCAGGTTGGGCATTAGAGCCAAGCCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp CAGTTTGGAAGCTCAGGAATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGAGTGAGCCCATATGCAACCTaGTGGCTGACTCTGGACAGC +
Preference number: 4 (lower is better)
Translates to: QFGSSGMNGRGRVSQPGVSPYAT*WLTLDS
Trigger: GCTGTCCAGAGTCAGCCACCAGGTTGCATATGGGCT...CACTCCAGGCTGCGAGACTCTTCCTCTGCCATTCATTCCTGAGCTTCCAAACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp TTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCCAGGAGCATCAGCCCTaGCTGTGGCTTGAAGAGCAT +
Preference number: 4 (lower is better)
Translates to: FSICTCSCGQAPIESYLSQEHQP*LWLEEH
Trigger: ATGCTCTTCAAGCCACAGCCAGGGCTGATGCTCCTG...GGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp CCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCCCTCCACTTGGAAAATaGAGGCCTCGGGCATCTAAG +
Preference number: 4 (lower is better)
Translates to: PLSFSICTCSCGQAPIESPPLGK*RPRASK
Trigger: CTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGG...GGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp CTCTCAGTTTGGAAGCTCAGGAATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGCATGAGCTCCTGCAGTaGTTCCAGCTGGAGGAACTT +
Preference number: 4 (lower is better)
Translates to: LSVWKLRNEWQRKSLAAWHELLQ*FQLEEL
Trigger: AAGTTCCTCCAGCTGGAATCACTGCAGGAGCTCATG...CCAGGCTGCGAGACTCTTCCTCTGCCATTCATTCCTGAGCTTCCAAACTGAGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp CAGGACTCCCACTCCAGGGCATCTAGCTTCTGTAGGTCATGCACCAGAAGGGCTGACAATGAAGGACAGTaGCTCCACACACTTAAGCAG +
Preference number: 4 (lower is better)
Translates to: QDSHSRASSFCRSCTRRADNEGQ*LHTLKQ
Trigger: CTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTC...AGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175747.2
CDS-3UTR TCA 90 bp TTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCTTGTCAGGGGTGATGTaGGCAGCATCTCGGACAATG +
Preference number: 4 (lower is better)
Translates to: FSICTCSCGQAPIESYLSLSGVM*AASRTM
Trigger: CATTGTCCGAGATGCTGCTCACATCACCCCTGACAA...GGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp GGCCCAGGACTGAGGGGACTGGATAGAGAGGAACAAAGTGCAGAGTGGCTGGGCTTTCCCATCACTGGTTaGTCTCTCAGACTTGTTAGT +
Preference number: 4 (lower is better)
Translates to: GPGLRGLDREEQSAEWLGFPITG*SLRLVS
Trigger: ACTAACAAGTCTGAGAGAGCAACCAGTGATGGGAAA...GCCCAGCCACTCTGCACTTTGTTCCTCTCTATCCAGTCCCCTCAGTCCTGGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp GAGTCCTATCTGTCCACCCTCCGTGGTGCCAAGCAACTCCAAGCTGACCAACTACTTCCTCCAGATCTCTaGACCCTGGCTTTCCATGTT +
Preference number: 4 (lower is better)
Translates to: ESYLSTLRGAKQLQADQLLPPDL*TLAFHV
Trigger: AACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAG...TAGTTGGTCAGCTTGGAGTTGCTTGGCACCACGGAGGGTGGACAGATAGGACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp ATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGGCTGTAGAGAGATCTTaGCATTGGGATCCACAAAAT +
Preference number: 4 (lower is better)
Translates to: MYMLLWAGPHRVLSVHPPAVERS*HWDPQN
Trigger: ATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGC...CGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp GCCAGGCTGGAGGCAGAGGCTACAGGTTCTGCCTGCATCCACTCTCAGTTTGGATCACTGGAACCTGCATaGATGTACTTGTCCATGAAG +
Preference number: 4 (lower is better)
Translates to: ARLEAEATGSACIHSQFGSLEPA*MYLSMK
Trigger: CTTCATGGACAAGTACATGCATGCAGGTTCCAGTGA...TCCAAACTGAGAGTGGATGCAGGCAGAACCTGTAGCCTCTGCCTCCAGCCTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp CCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTCCTGGATGACAGTCTaGTTGAAGAGCTCGTCACGC +
Preference number: 4 (lower is better)
Translates to: PLSFSICTCSCGQAPIESSWMTV*LKSSSR
Trigger: GCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGA...GGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp GAGTCCTATCTGTCCACCCTCCGTGGTGCCAAGCAACTCCAAGCTGACCAACTAGCTGAGCCCTGCTCCTaGTTTGGAGTTATCAATGTC +
Preference number: 4 (lower is better)
Translates to: ESYLSTLRGAKQLQADQLAEPCS*FGVINV
Trigger: GACATTGATAACTCCAAACCAGGAGCAGGGCTCAGC...TAGTTGGTCAGCTTGGAGTTGCTTGGCACCACGGAGGGTGGACAGATAGGACTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp CACTCCAGGGCATCTAGCTTCTGTAGGTCATGCACCAGAAGGGCTCGCTGCAGAACCCACCATTCAGACTaGCTTCTACAAAGATGCGGA +
Preference number: 4 (lower is better)
Translates to: HSRASSFCRSCTRRARCRTHHSD*LLQRCG
Trigger: TCCGCATCTTTGTAGAAGCCAGTCTGAATGGTGGGT...TCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175747.2
CDS-3UTR CCA 90 bp GAGGAAGAGTCTCGCAGCCTGGAGTGGATCCCAGCAGGGACTATAAAAGTTGTCACACCGTATGGTAGCTaGCAGGCACACCTTCATCCT +
Preference number: 4 (lower is better)
Translates to: EEESRSLEWIPAGTIKVVTPYGS*QAHLHP
Trigger: AGGATGAAGGTGTGCCTGCCAGCTACCATACGGTGT...GACAACTTTTATAGTCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTTCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp ACCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCTCAGCTTCAATCTTCTaGCCACCTCCCTCCAGGTGG +
Preference number: 4 (lower is better)
Translates to: TVIIFHMYMLLWAGPHRVSASIF*PPPSRW
Trigger: CCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGA...GACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp TACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGTGGTATTTTCCAAAAGCTTaGTCAGGAGAGGAAACAGCA +
Preference number: 4 (lower is better)
Translates to: YMLLWAGPHRVLSVHPPWYFPKA*SGEETA
Trigger: TGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATA...CCACGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp TATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCATTTGGCTCAATCTCTaGGAGTTCTGTCACACTGTT +
Preference number: 4 (lower is better)
Translates to: YVHAPVGRPPSSPICPPSIWLNL*EFCHTV
Trigger: AACAGTGTGACAGAACTCTCAGAGATTGAGCCAAAT...GGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp TTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCTCTCTAACTGGAACTTaGGGTGTTCCCGCATGCTCT +
Preference number: 4 (lower is better)
Translates to: FSICTCSCGQAPIESYLSSLTGT*GVPACS
Trigger: AGAGCATGCGGGAACACCTCAAGTTCCAGTTAGAGA...GGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp CTGAGACTGAAGCAGAGTCTTGAACGCCTGATAGGAAGGAATGGTCCTGATCTCTCAAGCCGCAGACCCTaGAAGCTGAAGGTGCTCACA +
Preference number: 4 (lower is better)
Translates to: LRLKQSLERLIGRNGPDLSSRRP*KLKVLT
Trigger: TGTGAGCACCTTCAGCTTTCAGGGTCTGCGGCTTGA...GAGATCAGGACCATTCCTTCCTATCAGGCGTTCAAGACTCTGCTTCAGTCTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp ATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGAGTGGATCCCAGCAGGGACTATAAAGCTAAGAACTGTTaGCTCTCCTCGGTTGGATGG +
Preference number: 4 (lower is better)
Translates to: MNGRGRVSQPGVDPSRDYKAKNC*LSSVGW
Trigger: CCATCCAACCGAGGAGAGTCAACAGTTCTTAGCTTT...ATAGTCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTTCCTCTGCCATTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp CGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTACCCTCGGTCCAGGCTaGCATCATTTTGATGGTAGG +
Preference number: 4 (lower is better)
Translates to: RYHFPYVHAPVGRPPSSPTLGPG*HHFDGR
Trigger: CCTACCATCAAAATGATGTCAGCCTGGACCGAGGGT...AGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp CTGAGACTGAAGCAGAGTCTTGAACGCCTGATAGGAAGGAATGGTCCTGATCTCTTGCTCCTCTGCCCATaGGCTGTAGATAGAGGCTGC +
Preference number: 4 (lower is better)
Translates to: LRLKQSLERLIGRNGPDLLLLCP*AVDRGC
Trigger: GCAGCCTCTATCTACAGCTCATGGGCAGAGGAGCAA...GAGATCAGGACCATTCCTTCCTATCAGGCGTTCAAGACTCTGCTTCAGTCTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp ATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGAGTGGATCCCAGCAGGGACTATGTCTCTTTCTTCTCTTaGTGGTTGAGGGTGTTGAGG +
Preference number: 4 (lower is better)
Translates to: MNGRGRVSQPGVDPSRDYVSFFS*WLRVLR
Trigger: CCTCAACACCCTCAACCAGCAAGAGAAGAAAGAGAC...ATAGTCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTTCCTCTGCCATTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp GAGTCCTATCTGTCCACCCTCCGTGGTGCCAAGCAACTCCAAGCTGACCAACTATCATCAGTAACAAGATaGGCAGAGAGAGCAGGACCT +
Preference number: 4 (lower is better)
Translates to: ESYLSTLRGAKQLQADQLSSVTR*AERAGP
Trigger: AGGTCCTGCTCTCTCTGCGCATCTTGTTACTGATGA...TAGTTGGTCAGCTTGGAGTTGCTTGGCACCACGGAGGGTGGACAGATAGGACTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp GAGGAAGAGTCTCGCAGCCTGGAGTGGATCCCAGCAGGGACTATAAAAGTTGTCAGCAGTGGAGACAGATaGTGCAGGAAGACCTTTGAG +
Preference number: 4 (lower is better)
Translates to: EEESRSLEWIPAGTIKVVSSGDR*CRKTFE
Trigger: CTCAAAGGTCTTCCTGCAGCATCTGTCTCCACTGCT...GACAACTTTTATAGTCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTTCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp CAGCCCCTGAGACTGAAGCAGAGTCTTGAACGCCTGATAGGAAGGAATGGTCCTTCCTCCTCTTGCATCTaGACTGTGGAAAATCTCCGC +
Preference number: 4 (lower is better)
Translates to: QPLRLKQSLERLIGRNGPSSSCI*TVENLR
Trigger: GCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGA...AGGACCATTCCTTCCTATCAGGCGTTCAAGACTCTGCTTCAGTCTCAGGGGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp CTGAGACTGAAGCAGAGTCTTGAACGCCTGATAGGAAGGAATGGTCCTGATCTCGGTGGCCTCAATGAGTaGAGGGTTGAGGATGATGGG +
Preference number: 4 (lower is better)
Translates to: LRLKQSLERLIGRNGPDLGGLNE*RVEDDG
Trigger: CCCATCATCCTCAACCCTGCACTCATTGAGGCCACC...GAGATCAGGACCATTCCTTCCTATCAGGCGTTCAAGACTCTGCTTCAGTCTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp ATGGCAGAGGAAGAGTCTCGCAGCCTGGAGTGGATCCCAGCAGGGACTATAAAACCGTTCTTCATCCAGTaGTATATGGGTGCTCCATCG +
Preference number: 4 (lower is better)
Translates to: MAEEESRSLEWIPAGTIKPFFIQ*YMGAPS
Trigger: CGATGGAGCACCCATATACCACTGGATGAAGAACGG...TTTTATAGTCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTTCCTCTGCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp ACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGTGGTACATTGTGGTTATGTTaGTCAGTGTTAAGCATGATG +
Preference number: 4 (lower is better)
Translates to: TCSCGQAPIESYLSTLRGTLWLC*SVLSMM
Trigger: CATCATGCTTAACACTGACCAACATAACCACAATGT...ACCACGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp CTCTCAGTTTGGAAGCTCAGGAATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGCCTGAGATGGCTTTCTaGATGATGGTCTCCTCAAGG +
Preference number: 4 (lower is better)
Translates to: LSVWKLRNEWQRKSLAAWPEMAF*MMVSSR
Trigger: CCTTGAGGAGACCATCATCCAGAAAGCCATCTCAGG...CCAGGCTGCGAGACTCTTCCTCTGCCATTCATTCCTGAGCTTCCAAACTGAGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp ACCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCCATGTCAGCATCTGTaGCCGATCGGTGTATCTTGC +
Preference number: 4 (lower is better)
Translates to: TVIIFHMYMLLWAGPHRVPCQHL*PIGVSC
Trigger: GCAAGATACACCGATCGGCCACAGATGCTGACATGG...GACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp CTCTCAGTTTGGAAGCTCAGGAATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGCCTCTTTCAGGTTACTaGAACTGTGCAGAAGGGGAT +
Preference number: 4 (lower is better)
Translates to: LSVWKLRNEWQRKSLAAWPLSGY*NCAEGD
Trigger: ATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGG...CCAGGCTGCGAGACTCTTCCTCTGCCATTCATTCCTGAGCTTCCAAACTGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp CTGAGACTGAAGCAGAGTCTTGAACGCCTGATAGGAAGGAATGGTCCTGATCTCTGGCAGCATTGGTCTTaGGGAGTTCATGCAGCCCAT +
Preference number: 4 (lower is better)
Translates to: LRLKQSLERLIGRNGPDLWQHWS*GVHAAH
Trigger: ATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCA...GAGATCAGGACCATTCCTTCCTATCAGGCGTTCAAGACTCTGCTTCAGTCTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp GAGGAAGAGTCTCGCAGCCTGGAGTGGATCCCAGCAGGGACTATAAAAGTTGTCAGATGCGGAGAGTCTTaGCGCAGAGTTCAAAGTTGT +
Preference number: 4 (lower is better)
Translates to: EEESRSLEWIPAGTIKVVRCGES*RRVQSC
Trigger: ACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCT...GACAACTTTTATAGTCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTTCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp CAGGACTCCCACTCCAGGGCATCTAGCTTCTGTAGGTCATGCACCAGAAGGGCTTTGCTGTCATACTTATaGCTCTTGCTGCGTTTATCC +
Preference number: 4 (lower is better)
Translates to: QDSHSRASSFCRSCTRRALLSYL*LLLRLS
Trigger: GGATAAACGCAGCAAGAGTCATAAGTATGACAGCAA...AGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175747.2
CDS-3UTR TCA 90 bp CTGTCCACCCTCCGTGGTGCCAAGCAACTCCAAGCTGACCAACTATTTAATGAAGCAGCAGAAGTCAGGTaGGTAGAGGCCAGAGGTTTT +
Preference number: 4 (lower is better)
Translates to: LSTLRGAKQLQADQLFNEAAEVR*VEARGF
Trigger: AAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGC...TTCATTAAATAGTTGGTCAGCTTGGAGTTGCTTGGCACCACGGAGGGTGGACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp CTCTCAGTTTGGAAGCTCAGGAATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGAGGTTACTGAAACTGTaGAGAAGGGGATCCCGTTCT +
Preference number: 4 (lower is better)
Translates to: LSVWKLRNEWQRKSLAAWRLLKL*RRGSRS
Trigger: AGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCT...CCAGGCTGCGAGACTCTTCCTCTGCCATTCATTCCTGAGCTTCCAAACTGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp CAGTTTGGAAGCTCAGGAATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGAGTGGGAAGAGCTCACGGATaGAAGGAAGACCATAAGGAA +
Preference number: 4 (lower is better)
Translates to: QFGSSGMNGRGRVSQPGVGRAHG*KEDHKE
Trigger: TTCCTTATGGTCTTCCTTGCATCCGTGAGCTCTTCC...CACTCCAGGCTGCGAGACTCTTCCTCTGCCATTCATTCCTGAGCTTCCAAACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp GAGGAAGAGTCTCGCAGCCTGGAGTGGATCCCAGCAGGGACTATAAAAGTTGTCCTCCAGGGTCATGGGTaGATTCTGCTTTCGAACATT +
Preference number: 4 (lower is better)
Translates to: EEESRSLEWIPAGTIKVVLQGHG*ILLSNI
Trigger: AATGTTCGAAAGCAGAATGCACCCATGACCCTGGAG...GACAACTTTTATAGTCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTTCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp CCCGCCCACATCTGCAGGGCTGATATTTTCCAAAAGCTTGGTCAGGAGAGGAAAGTTTATCCTGGGACTTaGACCCACCATTCAGACTGG +
Preference number: 4 (lower is better)
Translates to: PAHICRADIFQKLGQERKVYPGT*THHSDW
Trigger: CCAGTCTGAATGGTGGGTGCAAGTCCCAGGATAAAC...TTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175747.2
CDS-3UTR CCA 90 bp TCACGGACCAGACCTGTCTGCTCCTCAGGCATCACAATCTCCTCATTCTTGATGCTCCGTGTTATCCATTaGGATGGTGAGGAGGCCTTT +
Preference number: 4 (lower is better)
Translates to: SRTRPVCSSGITISSFLMLRVIH*DGEEAF
Trigger: AAAGGCCTCCTCACCATCCCAATGGATAACACGGAG...CATCAAGAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177512.3
CDS-3UTR CCA 90 bp ATGGCAGAGGAAGAGTCTCGCAGCCTGGAGTGGATCCCAGCAGGGACTATAAAATGCAGTGATTCCAGCTaGAGGAACTTGCTTTCTGTG +
Preference number: 4 (lower is better)
Translates to: MAEEESRSLEWIPAGTIKCSDSS*RNLLSV
Trigger: CACAGAAAGCAAGTTCCTCCAGCTGGAATCACTGCA...TTTTATAGTCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTTCCTCTGCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp CAGCCCCTGAGACTGAAGCAGAGTCTTGAACGCCTGATAGGAAGGAATGGTCCTGCCCTGCTCCTGGTTTaGAGTTATCAATGTCATCCT +
Preference number: 4 (lower is better)
Translates to: QPLRLKQSLERLIGRNGPALLLV*SYQCHP
Trigger: AGGATGACATTGATAACTCCAAACCAGGAGCAGGGC...AGGACCATTCCTTCCTATCAGGCGTTCAAGACTCTGCTTCAGTCTCAGGGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp CCCGCCCACATCTGCAGGGCTGATATTTTCCAAAAGCTTGGTCAGGAGAGGAAAGCTGAGCCCTGCTCCTaGTTTGGAGTTATCAATGTC +
Preference number: 4 (lower is better)
Translates to: PAHICRADIFQKLGQERKAEPCS*FGVINV
Trigger: GACATTGATAACTCCAAACCAGGAGCAGGGCTCAGC...TTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175747.2
CDS-3UTR CCA 90 bp GGAAACAGCACCTTGTTAAAACAGGACTCCCACTCCAGGGCATCTAGCTTCTGTACTGTAAGGCTGTACTaGTTGACCAGGGGTGAAGGG +
Preference number: 4 (lower is better)
Translates to: GNSTLLKQDSHSRASSFCTVRLY*LTRGEG
Trigger: CCCTTCACCCCTGGTCAACCAGTACAGCCTTACAGT...ACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGGTGCTGTTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175747.2
CDS-3UTR CCA 90 bp AGAGGAAACAGCACCTTGTTAAAACAGGACTCCCACTCCAGGGCATCTAGCTTCACACCGTATGGTAGCTaGCAGGCACACCTTCATCCT +
Preference number: 4 (lower is better)
Translates to: RGNSTLLKQDSHSRASSFTPYGS*QAHLHP
Trigger: AGGATGAAGGTGTGCCTGCCAGCTACCATACGGTGT...GAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGGTGCTGTTTCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175747.2
CDS-3UTR TCA 90 bp CCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTGTCTTCAGAGCGAATaGCTTCCAGAAATGGACGAA +
Preference number: 4 (lower is better)
Translates to: PLSFSICTCSCGQAPIESCLQSE*LPEMDE
Trigger: TTCGTCCATTTCTGGAAGTCATTCGCTCTGAAGACA...GGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp TATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCACTGAGGTAACCTTGTaGAGAGCAGCTGCACCATGT +
Preference number: 4 (lower is better)
Translates to: YHFPYVHAPVGRPPSSPITEVTL*RAAAPC
Trigger: ACATGGTGCAGCTGCTCTTCACAAGGTTACCTCAGT...GATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp AAAAGTCCACCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCGCTCTGAACCTGGTGTaGCTTTGGTTGTATGACGTG +
Preference number: 4 (lower is better)
Translates to: KSPPLSFSICTCSCGQAPALNLV*LWLYDV
Trigger: CACGTCATACAACCAAAGTCACACCAGGTTCAGAGC...GGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGGTGGACTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp CTGAGACTGAAGCAGAGTCTTGAACGCCTGATAGGAAGGAATGGTCCTGATCTCGCAGACCCTGAAAGCTaGAGGTGCTCACAAAACTCT +
Preference number: 4 (lower is better)
Translates to: LRLKQSLERLIGRNGPDLADPES*RCSQNS
Trigger: AGAGTTTTGTGAGCACCTTCAGCTTTCAGGGTCTGC...GAGATCAGGACCATTCCTTCCTATCAGGCGTTCAAGACTCTGCTTCAGTCTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp TTTTTGCGAAATTCCTCCAGGGTCATGGGTGCATTCTGCTTTCGAACATTGTGGTCAAGCCGCAGACCCTaGAAGCTGAAGGTGCTCACA +
Preference number: 4 (lower is better)
Translates to: FLRNSSRVMGAFCFRTLWSSRRP*KLKVLT
Trigger: TGTGAGCACCTTCAGCTTTCAGGGTCTGCGGCTTGA...CCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAGGAATTTCGCAAAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177512.3
CDS-3UTR TCA 90 bp TTTTGCGAAATTCCTCCAGGGTCATGGGTGCATTCTGCTTTCGAACATTGTGGTACCTCCAGCAACCTGTaGATAACGGGTGCTTCCCCA +
Preference number: 4 (lower is better)
Translates to: FCEIPPGSWVHSAFEHCGTSSNL*ITGASP
Trigger: TGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGT...ACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAGGAATTTCGCAAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177512.3
CDS-3UTR TCA 90 bp AAAAGTCCACCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCTCATGGCACACTTCCTaGAGCCTGAGATGGCTTTCT +
Preference number: 4 (lower is better)
Translates to: KSPPLSFSICTCSCGQAPSWHTS*SLRWLS
Trigger: AGAAAGCCATCTCAGGCTTCAGGAAGTGTGCCATGA...GGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGGTGGACTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp CAGTTTGGAAGCTCAGGAATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGAGTGCAGAAATCTTGTGCCTaGACACACAGGTGGTATAGA +
Preference number: 4 (lower is better)
Translates to: QFGSSGMNGRGRVSQPGVQKSCA*THRWYR
Trigger: TCTATACCACCTGTGTGTTCAGGCACAAGATTTCTG...CACTCCAGGCTGCGAGACTCTTCCTCTGCCATTCATTCCTGAGCTTCCAAACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp AGGAGAGGAAACAGCACCTTGTTAAAACAGGACTCCCACTCCAGGGCATCTAGCAGATGCGGAGAGTCTTaGCGCAGAGTTCAAAGTTGT +
Preference number: 4 (lower is better)
Translates to: RRGNSTLLKQDSHSRASSRCGES*RRVQSC
Trigger: ACAACTTTGAACTCTGCGTCAAGACTCTCCGCATCT...GCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGGTGCTGTTTCCTCTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175747.2
CDS-3UTR GCA 90 bp ATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGAGTGGATCCCAGCAGGGACTATAGTTGGATCTATGAGTaGGTAGGACAGGAACTTGTT +
Preference number: 4 (lower is better)
Translates to: MNGRGRVSQPGVDPSRDYSWIYE*VGQELV
Trigger: AACAAGTTCCTGTCCTACGCACTCATAGATCCAACT...ATAGTCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTTCCTCTGCCATTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp TATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCGGTCAGCAGGGGATGTaGATTCCTCTAACACTTCAG +
Preference number: 4 (lower is better)
Translates to: YHFPYVHAPVGRPPSSPIGQQGM*IPLTLQ
Trigger: CTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACC...GATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp TTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCGGTTTTTGGTTGAACTaGTCTGTACCAGTGATCAGC +
Preference number: 4 (lower is better)
Translates to: FSICTCSCGQAPIESYLSGFWLN*SVPVIS
Trigger: GCTGATCACTGGTACAGAGCAGTTCAACCAAAAACC...GGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp CTCTCAGTTTGGAAGCTCAGGAATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGGAAGCAGAAATCTTGTaGCTGAACACACAGGTGGTA +
Preference number: 4 (lower is better)
Translates to: LSVWKLRNEWQRKSLAAWEAEIL*LNTQVV
Trigger: TACCACCTGTGTGTTCAGGCACAAGATTTCTGCTTC...CCAGGCTGCGAGACTCTTCCTCTGCCATTCATTCCTGAGCTTCCAAACTGAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp AAAAGTCCACCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCTTCATGCAGCCCATATaGAACCTGGTGGCTGACTCT +
Preference number: 4 (lower is better)
Translates to: KSPPLSFSICTCSCGQAPFMQPI*NLVADS
Trigger: AGAGTCAGCCACCAGGTTGCATATGGGCTGCATGAA...GGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGGTGGACTTTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp TATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCGTTTATCCTGGGACTTaGACCCACCATTCAGACTGG +
Preference number: 4 (lower is better)
Translates to: YHFPYVHAPVGRPPSSPIVYPGT*THHSDW
Trigger: CCAGTCTGAATGGTGGGTGCAAGTCCCAGGATAAAC...GATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp CCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTCAGCTTCTTCATGTTaGTTCCCACATAGCTCTTGG +
Preference number: 4 (lower is better)
Translates to: PLSFSICTCSCGQAPIESSASSC*FPHSSW
Trigger: CCAAGAGCTATGTGGGAACCAACATGAAGAAGCTGA...GGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp CTGTCCACCCTCCGTGGTGCCAAGCAACTCCAAGCTGACCAACTATTTAATGAAGTCTTGGCTGCTATGTaGGCTTTAGGGTTGCTTCCA +
Preference number: 4 (lower is better)
Translates to: LSTLRGAKQLQADQLFNEVLAAM*ALGLLP
Trigger: TGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGAC...TTCATTAAATAGTTGGTCAGCTTGGAGTTGCTTGGCACCACGGAGGGTGGACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp CTCTCAGTTTGGAAGCTCAGGAATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGCTGACAGCAAATCACTaGAACCTGCATGCATGTACT +
Preference number: 4 (lower is better)
Translates to: LSVWKLRNEWQRKSLAAWLTANH*NLHACT
Trigger: AGTACATGCATGCAGGTTCCAGTGATTTGCTGTCAG...CCAGGCTGCGAGACTCTTCCTCTGCCATTCATTCCTGAGCTTCCAAACTGAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp TGTCTGCTCCTCAGGCATCACAATCTCCTCATTCTTGATGGCATGGTACATGTCGCAGACCCTGAAAGCTaGAGGTGCTCACAAAACTCT +
Preference number: 4 (lower is better)
Translates to: CLLLRHHNLLILDGMVHVADPES*RCSQNS
Trigger: AGAGTTTTGTGAGCACCTTCAGCTTTCAGGGTCTGC...GACATGTACCATGCCATCAAGAATGAGGAGATTGTGATGCCTGAGGAGCAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177512.3
CDS-3UTR TCA 90 bp AAAAGTCCACCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCACACTTCCTGAAGCCTaGGATGGCTTTCTGGATGAT +
Preference number: 4 (lower is better)
Translates to: KSPPLSFSICTCSCGQAPTLPEA*DGFLDD
Trigger: ATCATCCAGAAAGCCATCTCAGGCTTCAGGAAGTGT...GGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGGTGGACTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp ATGGCAGAGGAAGAGTCTCGCAGCCTGGAGTGGATCCCAGCAGGGACTATAAAAATGTCTACCAGAGTGTaGTCTGCGGATTTTCTCAAT +
Preference number: 4 (lower is better)
Translates to: MAEEESRSLEWIPAGTIKMSTRV*SADFLN
Trigger: ATTGAGAAAATCCGCAGAGCACACTCTGGTAGACAT...TTTTATAGTCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTTCCTCTGCCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp GAGGAAGAGTCTCGCAGCCTGGAGTGGATCCCAGCAGGGACTATAAAAGTTGTCTTGGATCCCCTTCTTTaGTTTTTGGTTGAACTGCTC +
Preference number: 4 (lower is better)
Translates to: EEESRSLEWIPAGTIKVVLDPLL*FLVELL
Trigger: GAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAA...GACAACTTTTATAGTCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTTCCTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp ACGGACCAGACCTGTCTGCTCCTCAGGCATCACAATCTCCTCATTCTTGATGGCTTGGATCCCCTTCTTTaGTTTTTGGTTGAACTGCTC +
Preference number: 4 (lower is better)
Translates to: TDQTCLLLRHHNLLILDGLDPLL*FLVELL
Trigger: GAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAA...GCCATCAAGAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000177512.3
CDS-3UTR CCA 90 bp ATGGCAGAGGAAGAGTCTCGCAGCCTGGAGTGGATCCCAGCAGGGACTATAAAATCATTCTTGATGGCATaGTACATGTCTTCCAGGATG +
Preference number: 4 (lower is better)
Translates to: MAEEESRSLEWIPAGTIKSFLMA*YMSSRM
Trigger: CATCCTGGAAGACATGTACCATGCCATCAAGAATGA...TTTTATAGTCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTTCCTCTGCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp TACCATAAAAAGTCCACCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCACCCACAAAACGGGCGTaGGTGACAGCATCTGCCATG +
Preference number: 4 (lower is better)
Translates to: YHKKSTVIIFHMYMLLWAPTKRA*VTASAM
Trigger: CATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGG...TGCCCACAGGAGCATGTACATATGGAAAATGATAACGGTGGACTTTTTATGGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp AAAAGTCCACCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCGTCACTCATGCCTCCTaGTCTCATTTTCAGCTTCTT +
Preference number: 4 (lower is better)
Translates to: KSPPLSFSICTCSCGQAPVTHAS*SHFQLL
Trigger: AAGAAGCTGAAAATGAGAGCAGGAGGCATGAGTGAC...GGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGGTGGACTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp GGTCATGGGTGCATTCTGCTTTCGAACATTGTGGTTATGTTGGTCAGTGTTAAGCCTGTGAATAACGGGTaGTTCCCCAGGCAAACGGAA +
Preference number: 4 (lower is better)
Translates to: GHGCILLSNIVVMLVSVKPVNNG*FPRQTE
Trigger: TTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGG...CTTAACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177512.3
CDS-3UTR GCA 90 bp GGAAACAGCACCTTGTTAAAACAGGACTCCCACTCCAGGGCATCTAGCTTCTGTACTTATGACTCTTGCTaGGTTTATCCTGGGACTTGC +
Preference number: 4 (lower is better)
Translates to: GNSTLLKQDSHSRASSFCTYDSC*VYPGTC
Trigger: GCAAGTCCCAGGATAAACGCAGCAAGAGTCATAAGT...ACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAACAAGGTGCTGTTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175747.2
CDS-3UTR GCA 90 bp TACCATAAAAAGTCCACCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGAGGCTGCCCGTGTGTaGAGGGTATGCATCAGGTCT +
Preference number: 4 (lower is better)
Translates to: YHKKSTVIIFHMYMLLWAEAARV*RVCIRS
Trigger: AGACCTGATGCATACCCTGCACACACGGGCAGCCTC...TGCCCACAGGAGCATGTACATATGGAAAATGATAACGGTGGACTTTTTATGGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp TTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCTTCTCCTGCAGAAATTaGATCCCCTTCTTTGGTTTT +
Preference number: 4 (lower is better)
Translates to: FSICTCSCGQAPIESYLSFSCRN*IPFFGF
Trigger: AAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAA...GGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR TCA 90 bp CTGAGACTGAAGCAGAGTCTTGAACGCCTGATAGGAAGGAATGGTCCTGATCTCTTGCTGTCATACTTATaGCTCTTGCTGCGTTTATCC +
Preference number: 4 (lower is better)
Translates to: LRLKQSLERLIGRNGPDLLLSYL*LLLRLS
Trigger: GGATAAACGCAGCAAGAGTCATAAGTATGACAGCAA...GAGATCAGGACCATTCCTTCCTATCAGGCGTTCAAGACTCTGCTTCAGTCTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp AAAAGTCCACCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCCTTGCTCAAAGTCCTTaGCTCCATTCACACCTTTTA +
Preference number: 4 (lower is better)
Translates to: KSPPLSFSICTCSCGQAPLAQSP*LHSHLL
Trigger: TAAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAG...GGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGGTGGACTTTT
47% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp CTGTCCACCCTCCGTGGTGCCAAGCAACTCCAAGCTGACCAACTATTTAATGAACAAATCACTGGAACCTaGATGCATGTACTTGTCCAT +
Preference number: 4 (lower is better)
Translates to: LSTLRGAKQLQADQLFNEQITGT*MHVLVH
Trigger: ATGGACAAGTACATGCATGCAGGTTCCAGTGATTTG...TTCATTAAATAGTTGGTCAGCTTGGAGTTGCTTGGCACCACGGAGGGTGGACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp CAGCCCCTGAGACTGAAGCAGAGTCTTGAACGCCTGATAGGAAGGAATGGTCCTAATGACTTCCAGAAATaGACGAAGGAATACATTTGG +
Preference number: 4 (lower is better)
Translates to: QPLRLKQSLERLIGRNGPNDFQK*TKEYIW
Trigger: CCAAATGTATTCCTTCGTCCATTTCTGGAAGTCATT...AGGACCATTCCTTCCTATCAGGCGTTCAAGACTCTGCTTCAGTCTCAGGGGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp CTGTCCACCCTCCGTGGTGCCAAGCAACTCCAAGCTGACCAACTATTTAATGAAAAATGCAGTCCCATGTaGATCATCACCTCAGAGTTA +
Preference number: 4 (lower is better)
Translates to: LSTLRGAKQLQADQLFNEKCSPM*IITSEL
Trigger: TAACTCTGAGGTGATGATCCACATGGGACTGCATTT...TTCATTAAATAGTTGGTCAGCTTGGAGTTGCTTGGCACCACGGAGGGTGGACAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp CGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTGGTCTTCAAAGAGGTTaGAGCAATAGTAGTCACAAT +
Preference number: 4 (lower is better)
Translates to: RYHFPYVHAPVGRPPSSPGLQRG*SNSSHN
Trigger: ATTGTGACTACTATTGCTCCAACCTCTTTGAAGACC...AGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp ATCTGCAGGGCTGATATTTTCCAAAAGCTTGGTCAGGAGAGGAAACAGCACCTTGCCCTGCTCCTGGTTTaGAGTTATCAATGTCATCCT +
Preference number: 4 (lower is better)
Translates to: ICRADIFQKLGQERKQHLALLLV*SYQCHP
Trigger: AGGATGACATTGATAACTCCAAACCAGGAGCAGGGC...AAGGTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000175747.2
CDS-3UTR GCA 90 bp CTGTCCACCCTCCGTGGTGCCAAGCAACTCCAAGCTGACCAACTATTTAATGAAATCCGGAAGCAAGACTaGATAATCTCACATACAGAT +
Preference number: 4 (lower is better)
Translates to: LSTLRGAKQLQADQLFNEIRKQD*IISHTD
Trigger: ATCTGTATGTGAGATTATGCAGTCTTGCTTCCGGAT...TTCATTAAATAGTTGGTCAGCTTGGAGTTGCTTGGCACCACGGAGGGTGGACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp TTTTTGCGAAATTCCTCCAGGGTCATGGGTGCATTCTGCTTTCGAACATTGTGGGGTTTTTGGTTGAACTaGTCTGTACCAGTGATCAGC +
Preference number: 4 (lower is better)
Translates to: FLRNSSRVMGAFCFRTLWGFWLN*SVPVIS
Trigger: GCTGATCACTGGTACAGAGCAGTTCAACCAAAAACC...CCACAATGTTCGAAAGCAGAATGCACCCATGACCCTGGAGGAATTTCGCAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000177512.3
CDS-3UTR CCA 90 bp GTTATGTTGGTCAGTGTTAAGCATGATGACAGCATAGGCCAGGGCAAAGCAGGCTTCTCCTGCAGAAATTaGATCCCCTTCTTTGGTTTT +
Preference number: 4 (lower is better)
Translates to: VMLVSVKHDDSIGQGKAGFSCRN*IPFFGF
Trigger: AAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAA...GCCTGCTTTGCCCTGGCCTATGCTGTCATCATGCTTAACACTGACCAACATAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177512.3
CDS-3UTR CCA 90 bp CTGAGACTGAAGCAGAGTCTTGAACGCCTGATAGGAAGGAATGGTCCTGATCTCATCACTATTAGCAAATaGGGAGCCATTACAACTCCT +
Preference number: 4 (lower is better)
Translates to: LRLKQSLERLIGRNGPDLITISK*GAITTP
Trigger: AGGAGTTGTAATGGCTCCCCATTTGCTAATAGTGAT...GAGATCAGGACCATTCCTTCCTATCAGGCGTTCAAGACTCTGCTTCAGTCTCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp TACCATAAAAAGTCCACCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCACTCCGTGTTATCCATTaGGATGGTGAGGAGGCCTTT +
Preference number: 4 (lower is better)
Translates to: YHKKSTVIIFHMYMLLWALRVIH*DGEEAF
Trigger: AAAGGCCTCCTCACCATCCCAATGGATAACACGGAG...TGCCCACAGGAGCATGTACATATGGAAAATGATAACGGTGGACTTTTTATGGTA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CCA 90 bp TATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGCTTTCGAACATTGTaGTTATGTTGGTCAGTGTTA +
Preference number: 4 (lower is better)
Translates to: YHFPYVHAPVGRPPSSPICFRTL*LCWSVL
Trigger: TAACACTGACCAACATAACCACAATGTTCGAAAGCA...GATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR GCA 90 bp TACCATAAAAAGTCCACCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGTCATGGGTGCATTCTaGTTTCGAACATTGTGGTTA +
Preference number: 4 (lower is better)
Translates to: YHKKSTVIIFHMYMLLWAVMGAF*FRTLWL
Trigger: TAACCACAATGTTCGAAAGCAGAATGCACCCATGAC...TGCCCACAGGAGCATGTACATATGGAAAATGATAACGGTGGACTTTTTATGGTA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 90 bp CACCAGCAGTGGGCCCAGAGGGTGCGTGAGTCAGCTTCAATCTTCTaGCCACCTCCCTCCAGGTGGCGTTGCTCCTCTGCCCATGAGCTG +
Preference number: 5 (lower is better)
Translates to: HQQWAQRVRESASIF*PPPSRWRCSSAHEL
Trigger: CAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGACTCACGCACCCTCTGGGCCCACTGCTGGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp GGCAGGGGGCACATGGCAGGCACTGCAGGGTTGGCACGGCAGGGTTGGCTCTATGTAAGGCTGTACTGGTaGACCAGGGGTGAAGGGCCT +
Preference number: 5 (lower is better)
Translates to: GRGHMAGTAGLARQGWLYVRLYW*TRGEGP
Trigger: AGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTAC...ATAGAGCCAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp ACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGTGGTTGGGGGAGGTCCCTCTaGGGCAGGACTCAGTTTGCT +
Preference number: 5 (lower is better)
Translates to: TCSCGQAPIESYLSTLRGWGRSL*GRTQFA
Trigger: AGCAAACTGAGTCCTGCCCAAGAGGGACCTCCCCCA...ACCACGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp CCAACCTGGCAGGGGGCACATGGCAGGCACTGCAGGGTTGGCACGGCAGGGTTGTCAATGAGTGCAGGGTaGAGGATGATGGGCAGAGTC +
Preference number: 5 (lower is better)
Translates to: PTWQGAHGRHCRVGTAGLSMSAG*RMMGRV
Trigger: GACTCTGCCCATCATCCTCAACCCTGCACTCATTGA...CAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCCAGGTTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS GCA 90 bp CTGCTCCCAGGCTCACTGGTGGTGATCTCCCTTGGGGAGCCAGCTTaGTCCAGGTCAGTGAGGTCCTCCTTGGAGGTAGTCTGGGAGGAT +
Preference number: 5 (lower is better)
Translates to: LLPGSLVVISLGEPA*SRSVRSSLEVVWED
Trigger: ATCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000176574.2
CDS GCA 90 bp TCCAGGGCATCTAGCTTCTGTAGGTCATGCACCAGAAGGGCTCGCTaGAGATATGTCAGGGCCTGCATCCGTACCTGGCGCCGGGCGTCA +
Preference number: 5 (lower is better)
Translates to: SRASSFCRSCTRRAR*RYVRACIRTWRRAS
Trigger: TGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 90 bp GGAGCTCACTGTCCGACTGTGCTCCCGCATCAGGAGCATCAGCCCTaGCTGTGGCTTGAAGAGCATCTGGAGGCTTCACGCCTGAGCCAA +
Preference number: 5 (lower is better)
Translates to: GAHCPTVLPHQEHQP*LWLEEHLEASRLSQ
Trigger: TTGGCTCAGGCGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGATGCTCCTGATGCGGGAGCACAGTCGGACAGTGAGCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp CTGGGCTTGGCTCTAATGCCCAACCTGGCAGGGGGCACATGGCAGGCACTGCAGACCTCCACCATAGCCTaGGGTAAAAGTTGGGCTCGG +
Preference number: 5 (lower is better)
Translates to: LGLALMPNLAGGTWQALQTSTIA*GKSWAR
Trigger: CCGAGCCCAACTTTTACCCAAGGCTATGGTGGAGGT...CTGCAGTGCCTGCCATGTGCCCCCTGCCAGGTTGGGCATTAGAGCCAAGCCCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS GCA 90 bp TGTAGGTCATGCACCAGAAGGGCTCGCTGCAGATATGTCAGGGCCTaGATCCGTACCTGGCGCCGGGCGTCACAGCATAAGCAGGCGATT +
Preference number: 5 (lower is better)
Translates to: CRSCTRRARCRYVRA*IRTWRRASQHKQAI
Trigger: AATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 90 bp CACTGTCCGACTGTGCTCCCGCATCAGGAGCATCAGCCCTGGCTGTaGCTTGAAGAGCATCTGGAGGCTTCACGCCTGAGCCAATGCACT +
Preference number: 5 (lower is better)
Translates to: HCPTVLPHQEHQPWL*LEEHLEASRLSQCT
Trigger: AGTGCATTGGCTCAGGCGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGATGCTCCTGATGCGGGAGCACAGTCGGACAGTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp AGGGTTGGCACGGCAGGGTTGGCTCTATGCCTTCCCAGGGATGCCAGGCTGGAGTTGGCAGCATTGGTCTaGAGGAGTTCATGCAGCCCA +
Preference number: 5 (lower is better)
Translates to: RVGTAGLALCLPRDARLELAALV*RSSCSP
Trigger: TGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAA...CTCCAGCCTGGCATCCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS GCA 90 bp AGGCGATTCCTTGTAATAAAGGGCACCAGCAGTGGGCCCAGAGGGTaGGTGAGTCAGCTTCAATCTTCTGGCCACCTCCCTCCAGGTGGC +
Preference number: 5 (lower is better)
Translates to: RRFLVIKGTSSGPRG*VSQLQSSGHLPPGG
Trigger: GCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGACTCACGCACCCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAGGAATCGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS GCA 90 bp GCGCTCCCAGGTAATCTCCCAGAGAGCAGAGGGGCCTCCTCCTCTTaGATCTGCACTGTGGAAAATCTCCGCTGTGTCCATCACCAGCAG +
Preference number: 5 (lower is better)
Translates to: ALPGNLPESRGASSS*ICTVENLRCVHHQQ
Trigger: CTGCTGGTGATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACCTGGGAGCGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp GGCACTGCAGGGTTGGCACGGCAGGGTTGGCTCTATGCCTTCCCAGGGATGCCAATCTCTAACTGGAACTaGAGGTGTTCCCGCATGCTC +
Preference number: 5 (lower is better)
Translates to: GTAGLARQGWLYAFPGMPISNWN*RCSRML
Trigger: GAGCATGCGGGAACACCTCAAGTTCCAGTTAGAGAT...TGGCATCCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACCCTGCAGTGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp GGTTGGCACGGCAGGGTTGGCTCTATGCCTTCCCAGGGATGCCAGGCTGGAGGCTTCTTCTCTTGCTGGTaGAGGGTGTTGAGGACTTTG +
Preference number: 5 (lower is better)
Translates to: GWHGRVGSMPSQGCQAGGFFSCW*RVLRTL
Trigger: CAAAGTCCTCAACACCCTCAACCAGCAAGAGAAGAA...GCCTCCAGCCTGGCATCCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp GGCACTGCAGGGTTGGCACGGCAGGGTTGGCTCTATGCCTTCCCAGGGATGCCATTCCTGGTGAACTTTTaGTCAGCCCCAGAGTCACCA +
Preference number: 5 (lower is better)
Translates to: GTAGLARQGWLYAFPGMPFLVNF*SAPESP
Trigger: TGGTGACTCTGGGGCTGACAAAAAGTTCACCAGGAA...TGGCATCCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACCCTGCAGTGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp CCAACCTGGCAGGGGGCACATGGCAGGCACTGCAGGGTTGGCACGGCAGGGTTGTTTTTCTGGGTCACATaGCTTGATACAGTCCAAGGC +
Preference number: 5 (lower is better)
Translates to: PTWQGAHGRHCRVGTAGLFFWVT*LDTVQG
Trigger: GCCTTGGACTGTATCAAGCAATGTGACCCAGAAAAA...CAACCCTGCCGTGCCAACCCTGCAGTGCCTGCCATGTGCCCCCTGCCAGGTTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 90 bp GAGCATCTGGAGGCTTCACGCCTGAGCCAATGCACTCCAGCAATGTaGAGAGGGTGGCCCAGTCATCACCCGAGTGGATGTTGGCAGCAT +
Preference number: 5 (lower is better)
Translates to: EHLEASRLSQCTPAM*RGWPSHHPSGCWQH
Trigger: ATGCTGCCAACATCCACTCGGGTGATGACTGGGCCACCCTCTTCACATTGCTGGAGTGCATTGGCTCAGGCGTGAAGCCTCCAGATGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 90 bp GGGGTCCTGGATGACAGTCTGCTTGAAGAGCTCGTCACGCAAGTGTaGCAAGAAGCAGTCGATGCGCTCCCAGGTAATCTCCCAGAGAGC +
Preference number: 5 (lower is better)
Translates to: GVLDDSLLEELVTQV*QEAVDALPGNLPES
Trigger: GCTCTCTGGGAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGACCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp AGGGTTGGCACGGCAGGGTTGGCTCTATGCCTTCCCAGGGATGCCAGGCTGGAGCATCGGGCATTTCGTTaGATGGCACCAACAACAATG +
Preference number: 5 (lower is better)
Translates to: RVGTAGLALCLPRDARLEHRAFR*MAPTTM
Trigger: CATTGTTGTTGGTGCCATCAAACGAAATGCCCGATG...CTCCAGCCTGGCATCCCTGGGAAGGCATAGAGCCAACCCTGCCGTGCCAACCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp GGCCCAGGACTGAGGGGACTGGATAGAGAGGAACAAAGTGCAGAGTGGCTGGGCAGGCAGCTTCTGAACTaGCAGAGGAGATGGATGTGG +
Preference number: 5 (lower is better)
Translates to: GPGLRGLDREEQSAEWLGRQLLN*QRRWMW
Trigger: CCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCT...GCCCAGCCACTCTGCACTTTGTTCCTCTCTATCCAGTCCCCTCAGTCCTGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp TTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCCCTTGGGGAGCCAGCTaGCTCCAGGTCAGTGAGGTC +
Preference number: 5 (lower is better)
Translates to: FSICTCSCGQAPIESYLSPWGAS*LQVSEV
Trigger: GACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGG...GGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp CTGGGCTTGGCTCTAATGCCCAACCTGGCAGGGGGCACATGGCAGGCACTGCAGCGCTGTAGAGAGATCTaGCCATTGGGATCCACAAAA +
Preference number: 5 (lower is better)
Translates to: LGLALMPNLAGGTWQALQRCREI*PLGSTK
Trigger: TTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCG...CTGCAGTGCCTGCCATGTGCCCCCTGCCAGGTTGGGCATTAGAGCCAAGCCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp ACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGTGGTCAGGCTGACATCATTTaGATGGTAGGATGGGAGCTC +
Preference number: 5 (lower is better)
Translates to: TCSCGQAPIESYLSTLRGQADII*MVGWEL
Trigger: GAGCTCCCATCCTACCATCAAAATGATGTCAGCCTG...ACCACGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp TACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGTGGAGCCCTGCTCCTGGTTaGGAGTTATCAATGTCATCC +
Preference number: 5 (lower is better)
Translates to: YMLLWAGPHRVLSVHPPWSPAPG*ELSMSS
Trigger: GGATGACATTGATAACTCCAAACCAGGAGCAGGGCT...CCACGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp CAGGACTCCCACTCCAGGGCATCTAGCTTCTGTAGGTCATGCACCAGAAGGGCTGTAAGGCTGTACTGGTaGACCAGGGGTGAAGGGCCT +
Preference number: 5 (lower is better)
Translates to: QDSHSRASSFCRSCTRRAVRLYW*TRGEGP
Trigger: AGGCCCTTCACCCCTGGTCAACCAGTACAGCCTTAC...AGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000175747.2
CDS-3UTR CAA 90 bp ATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGTGGATGACAGTCTGCTaGAAGAGCTCGTCACGCAAG +
Preference number: 5 (lower is better)
Translates to: MYMLLWAGPHRVLSVHPPWMTVC*KSSSRK
Trigger: CTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCA...CGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 90 bp AGGACAACTTCATCACTGGCAGGATCTGTGCCCACAAAACGGGCGTaGGTGACAGCATCTGCCATGTTCTCCATGCCCTCTGCTGTGCCC +
Preference number: 5 (lower is better)
Translates to: RTTSSLAGSVPTKRA*VTASAMFSMPSAVP
Trigger: GGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTGTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS GCA 90 bp TGGCACTGGGCCACAGGCGCTGACTCAAGAGCCACTGTCAGCAAATaGAGTCCCATGTGGATCATCACCTCAGAGTTATGGCGGTCGTGT +
Preference number: 5 (lower is better)
Translates to: WHWATGADSRATVSK*SPMWIITSELWRSC
Trigger: ACACGACCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS GCA 90 bp CCTCCAGTGCTCAGTGAATACCTCCAGCAACCTGTGAATAACGGGTaGTTCCCCAGGCAAACGGAAGGCTTCCAGGTAGAGTCGGAGAGC +
Preference number: 5 (lower is better)
Translates to: PPVLSEYLQQPVNNG*FPRQTEGFQVESES
Trigger: GCTCTCCGACTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000177512.3
CDS CCA 90 bp CAGAGTGGTCAGCAGGGGATGTGCATTCCTCTAACACTTCAGGGATaGACTCCACCGATGCTGACTGGGCCTTCTCTACATGGGCCCCTT +
Preference number: 5 (lower is better)
Translates to: QSGQQGMCIPLTLQG*TPPMLTGPSLHGPL
Trigger: AAGGGGCCCATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 90 bp GGAAGTGTACCCTCGGTCCAGGCTGACATCATTTTGATGGTAGGATaGGAGCTCACTGTCCGACTGTGCTCCCGCATCAGGAGCATCAGC +
Preference number: 5 (lower is better)
Translates to: GSVPSVQADIILMVG*ELTVRLCSRIRSIS
Trigger: GCTGATGCTCCTGATGCGGGAGCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 90 bp ACCAGAAGGGCTCGCTGCAGATATGTCAGGGCCTGCATCCGTACCTaGCGCCGGGCGTCACAGCATAAGCAGGCGATTCCTTGTAATAAA +
Preference number: 5 (lower is better)
Translates to: TRRARCRYVRACIRT*RRASQHKQAIPCNK
Trigger: TTTATTACAAGGAATCGCCTGCTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp CAGCCCCTGAGACTGAAGCAGAGTCTTGAACGCCTGATAGGAAGGAATGGTCCTGCCGATCGGTGTATCTaGCCAGGCCTGCCATGGTCT +
Preference number: 5 (lower is better)
Translates to: QPLRLKQSLERLIGRNGPADRCI*PGLPWS
Trigger: AGACCATGGCAGGCCTGGCAAGATACACCGATCGGC...AGGACCATTCCTTCCTATCAGGCGTTCAAGACTCTGCTTCAGTCTCAGGGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 90 bp CAACTTCATCACTGGCAGGATCTGTGCCCACAAAACGGGCGTGAGTaGCAGCATCTGCCATGTTCTCCATGCCCTCTGCTGTGCCCTCAT +
Preference number: 5 (lower is better)
Translates to: QLHHWQDLCPQNGRE*QHLPCSPCPLLCPH
Trigger: ATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGAAGTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 90 bp AAGCCCGCATCCGGGTCTCCTCCATCCCGCCCACATCTGCAGGGCTaGTATTTTCCAAAAGCTTGGTCAGGAGAGGAAACAGCACCTTGT +
Preference number: 5 (lower is better)
Translates to: KPASGSPPSRPHLQG*YFPKAWSGEETAPC
Trigger: ACAAGGTGCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGATGCGGGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 90 bp TCACAGCATAAGCAGGCGATTCCTGTAAAGACACCGTATGGTAGCTaGCAGGCACACCTTCATCCTCCTCTTCATCACTGTGCCCGCCCC +
Preference number: 5 (lower is better)
Translates to: SQHKQAIPVKTPYGS*QAHLHPPLHHCARP
Trigger: GGGGCGGGCACAGTGATGAAGAGGAGGATGAAGGTGTGCCTGCCAGCTACCATACGGTGTCTTTACAGGAATCGCCTGCTTATGCTGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175747.2
CDS-3UTR CAA 90 bp GCCAGGCTGGAGGCAGAGGCTACAGGTTCTGCCTGCATCCACTCTCAGTTTGGATTCTTGGACAGCAGCTaGGTGAGGTCTTCAAAGAGG +
Preference number: 5 (lower is better)
Translates to: ARLEAEATGSACIHSQFGFLDSS*VRSSKR
Trigger: CCTCTTTGAAGACCTCACCAAGCTGCTGTCCAAGAA...TCCAAACTGAGAGTGGATGCAGGCAGAACCTGTAGCCTCTGCCTCCAGCCTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp GGACTGAGGGGACTGGATAGAGAGGAACAAAGTGCAGAGTGGCTGGGCTTGGCTACAGGAAAGGCATTCTaGGACAGCAGCTTGGTGAGG +
Preference number: 5 (lower is better)
Translates to: GLRGLDREEQSAEWLGLATGKAF*DSSLVR
Trigger: CCTCACCAAGCTGCTGTCCAAGAATGCCTTTCCTGT...AGCCAAGCCCAGCCACTCTGCACTTTGTTCCTCTCTATCCAGTCCCCTCAGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp ACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCGTGGTAACAGGTCCATGTTTTaGCGGTCACTCACAAACTCT +
Preference number: 5 (lower is better)
Translates to: TCSCGQAPIESYLSTLRGNRSMF*RSLTNS
Trigger: AGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTT...ACCACGGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp TATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCTCTGGGTCACATTGCTaGATACAGTCCAAGGCCACT +
Preference number: 5 (lower is better)
Translates to: YVHAPVGRPPSSPICPPSSGSHC*IQSKAT
Trigger: AGTGGCCTTGGACTGTATCAAGCAATGTGACCCAGA...GGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp GGCCCAGGACTGAGGGGACTGGATAGAGAGGAACAAAGTGCAGAGTGGCTGGGCAGAGGAAACAGCACCTaGTTAAAACAGGACTCCCAC +
Preference number: 5 (lower is better)
Translates to: GPGLRGLDREEQSAEWLGRGNST*LKQDSH
Trigger: GTGGGAGTCCTGTTTTAACAAGGTGCTGTTTCCTCT...GCCCAGCCACTCTGCACTTTGTTCCTCTCTATCCAGTCCCCTCAGTCCTGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp ATGGCAGAGGAAGAGTCTCGCAGCCTGGAGTGGATCCCAGCAGGGACTATAAAAGCTGCAGGAAGACCTTaGAGAGCAGTGTGGAAGCCC +
Preference number: 5 (lower is better)
Translates to: MAEEESRSLEWIPAGTIKAAGRP*RAVWKP
Trigger: GGGCTTCCACACTGCTCTCAAAGGTCTTCCTGCAGC...TTTTATAGTCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTTCCTCTGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 90 bp ATCCTTAATGAGACCCAAGAGGGTCTGGCACTGGGCCACAGGCGCTaGCTCAAGAGCCACTGTCAGCAAATGCAGTCCCATGTGGATCAT +
Preference number: 5 (lower is better)
Translates to: ILNETQEGLALGHRR*LKSHCQQMQSHVDH
Trigger: ATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 90 bp GTTGTCAGGGGTGATGTGAGCAGCATCTCGGACAATGAAGGACAGTaGCTCCACACACTTAAGCAGGGACTTAGTGTCGTGTGGGCCCAG +
Preference number: 5 (lower is better)
Translates to: VVRGDVSSISDNEGQ*LHTLKQGLSVVWAQ
Trigger: CTGGGCCCACACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000175747.2
CDS GCA 90 bp CCATATCATGGACAGAGGCCGAGTCAGAGTGGTCAGCAGGGGATGTaGATTCCTCTAACACTTCAGGGATGGACTCCACCGATGCTGACT +
Preference number: 5 (lower is better)
Translates to: PYHGQRPSQSGQQGM*IPLTLQGWTPPMLT
Trigger: AGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTGACCACTCTGACTCGGCCTCTGTCCATGATATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS GCA 90 bp TTAAAACAGGACTCCCACTCCAGGGCATCTAGCTTCTGTAGGTCATaGACCAGAAGGGCTCGCTGCAGATATGTCAGGGCCTGCATCCGT +
Preference number: 5 (lower is better)
Translates to: LKQDSHSRASSFCRS*TRRARCRYVRACIR
Trigger: ACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTCCTGTTTTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 90 bp CCGAGGGTTTTCTCGGAGCCATTGGGCTACCTCCGTGTTATCCATTaGGATGGTGAGGAGGCCTTTCTCCTGCAGAAATTGGATCCCCTT +
Preference number: 5 (lower is better)
Translates to: PRVFSEPLGYLRVIH*DGEEAFLLQKLDPL
Trigger: AAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAAAACCCTCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000177512.3
CDS CCA 90 bp GGGTCACATTGCTTGATACAGTCCAAGGCCACTCTCTTGGCCTCTTaGTTCTCTGTAGATGGACCCCGTACACTGGACTGCTCAGGACCA +
Preference number: 5 (lower is better)
Translates to: GSHCLIQSKATLLAS*FSVDGPRTLDCSGP
Trigger: TGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAGCAATGTGACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 90 bp TCACAGCATAAGCAGGCGATTCCTTGTAATAAAGGGCACCAGCAGTaGGCCCAGAGGGTGCGTGAGTCAGCTTCAATCTTCTGGCCACCT +
Preference number: 5 (lower is better)
Translates to: SQHKQAIPCNKGHQQ*AQRVRESASIFWPP
Trigger: AGGTGGCCAGAAGATTGAAGCTGACTCACGCACCCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAGGAATCGCCTGCTTATGCTGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp CTCTCAGTTTGGAAGCTCAGGAATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGGTAATGTGGCTCCATTaGGGGTGGGCAGCTCTGAAC +
Preference number: 5 (lower is better)
Translates to: LSVWKLRNEWQRKSLAAWVMWLH*GWAALN
Trigger: GTTCAGAGCTGCCCACCCCAAATGGAGCCACATTAC...CCAGGCTGCGAGACTCTTCCTCTGCCATTCATTCCTGAGCTTCCAAACTGAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp TATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCAAGGAAGCAGAAATCTaGTGCCTGAACACACAGGTG +
Preference number: 5 (lower is better)
Translates to: YVHAPVGRPPSSPICPPSKEAEI*CLNTQV
Trigger: CACCTGTGTGTTCAGGCACAAGATTTCTGCTTCCTT...GGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp CTCTCAGTTTGGAAGCTCAGGAATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGTCACCCGAGTGGATGTaGGCAGCATTGGTCTTGAGG +
Preference number: 5 (lower is better)
Translates to: LSVWKLRNEWQRKSLAAWSPEWM*AALVLR
Trigger: CCTCAAGACCAATGCTGCCAACATCCACTCGGGTGA...CCAGGCTGCGAGACTCTTCCTCTGCCATTCATTCCTGAGCTTCCAAACTGAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp ATGGCAGAGGAAGAGTCTCGCAGCCTGGAGTGGATCCCAGCAGGGACTATAAAAAGGGGCCTCCTCCTCTaGCATCTGCACTGTGGAAAA +
Preference number: 5 (lower is better)
Translates to: MAEEESRSLEWIPAGTIKRGLLL*HLHCGK
Trigger: TTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCT...TTTTATAGTCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTTCCTCTGCCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 90 bp CAGGCCACTATCTGTACAGGGACTGACTACTGTCGAGGCAGCTTCTaGACTTGCAGAGGAGATGGATGTGGGTGCATCAATGAAGGGCAC +
Preference number: 5 (lower is better)
Translates to: QATICTGTDYCRGSF*TCRGDGCGCINEGH
Trigger: GTGCCCTTCATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000176574.2
CDS TCA 90 bp CCTTGGGTAAAAGTTGGGCTCGGAAAAGCTGCAACATGGCCTCCATaGTATTCTTCCAGCCCTCCCGAAGGATGTCACCATGACGATGGG +
Preference number: 5 (lower is better)
Translates to: PWVKVGLGKAATWPP*YSSSPPEGCHHDDG
Trigger: CCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 90 bp CGATCGGTGTATCTTGCCAGGCCTGCCATGGTCTGTGTAGACTTCTaGGTCGGAAGTGTACCCTCGGTCCAGGCTGACATCATTTTGATG +
Preference number: 5 (lower is better)
Translates to: RSVYLARPAMVCVDF*VGSVPSVQADIILM
Trigger: CATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATACACCGATCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS GCA 90 bp TGGATCTATGAGTGCGTAGGACAGGAACTTGTTGACAGAGGTGAGTaGCAGGCCGGTGATAGGACCAGTGGTGTCTTCAGAGCGAATGAC +
Preference number: 5 (lower is better)
Translates to: WIYECVGQELVDRGE*QAGDRTSGVFRAND
Trigger: GTCATTCGCTCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTCATAGATCCA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS GCA 90 bp AAAACGGGCGTGAGTGACAGCATCTGCCATGTTCTCCATGCCCTCTaGTGTGCCCTCATGAGTTGGATCTATGAGTGCGTAGGACAGGAA +
Preference number: 5 (lower is better)
Translates to: KTGVSDSICHVLHAL*CALMSWIYECVGQE
Trigger: TTCCTGTCCTACGCACTCATAGATCCAACTCATGAGGGCACAGCAGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 90 bp ACAGGCGCTGACTCAAGAGCCACTGTCAGCAAATGCAGTCCCATGTaGATCATCACCTCAGAGTTATGGCGGTCGTGTGGATTTGTGAGG +
Preference number: 5 (lower is better)
Translates to: TGADSRATVSKCSPM*IITSELWRSCGFVR
Trigger: CCTCACAAATCCACACGACCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 90 bp AATAAGTGTCGGCACATCTCATCCTTAATGAGACCCAAGAGGGTCTaGCACTGGGCCACAGGCGCTGACTCAAGAGCCACTGTCAGCAAA +
Preference number: 5 (lower is better)
Translates to: NKCRHISSLMRPKRV*HWATGADSRATVSK
Trigger: TTTGCTGACAGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCGACACTTATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 90 bp GCAGCATTGGTCTTGAGGAGTTCATGCAGCCCATATGCAACCTGGTaGCTGACTCTGGACAGCACGCTGGGCTTCATCAGTAACAAGATG +
Preference number: 5 (lower is better)
Translates to: AALVLRSSCSPYATW*LTLDSTLGFISNKM
Trigger: CATCTTGTTACTGATGAAGCCCAGCGTGCTGTCCAGAGTCAGCCACCAGGTTGCATATGGGCTGCATGAACTCCTCAAGACCAATGCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 90 bp TTGGCAGCATTGGTCTTGAGGAGTTCATGCAGCCCATATGCAACCTaGTGGCTGACTCTGGACAGCACGCTGGGCTTCATCAGTAACAAG +
Preference number: 5 (lower is better)
Translates to: LAALVLRSSCSPYAT*WLTLDSTLGFISNK
Trigger: CTTGTTACTGATGAAGCCCAGCGTGCTGTCCAGAGTCAGCCACCAGGTTGCATATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 90 bp ATGCACTCCAGCAATGTGAAGAGGGTGGCCCAGTCATCACCCGAGTaGATGTTGGCAGCATTGGTCTTGAGGAGTTCATGCAGCCCATAT +
Preference number: 5 (lower is better)
Translates to: MHSSNVKRVAQSSPE*MLAALVLRSSCSPY
Trigger: ATATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACTCGGGTGATGACTGGGCCACCCTCTTCACATTGCTGGAGTGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp GGACTGAGGGGACTGGATAGAGAGGAACAAAGTGCAGAGTGGCTGGGCTTGGCTTGTCTCTTTCTTCTCTaGCTGGTTGAGGGTGTTGAG +
Preference number: 5 (lower is better)
Translates to: GLRGLDREEQSAEWLGLACLFLL*LVEGVE
Trigger: CTCAACACCCTCAACCAGCAAGAGAAGAAAGAGACA...AGCCAAGCCCAGCCACTCTGCACTTTGTTCCTCTCTATCCAGTCCCCTCAGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp TATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTCCTCTTGCTCAAAGTCCTaGCCTCCATTCACACCTTTT +
Preference number: 5 (lower is better)
Translates to: YVHAPVGRPPSSPICPPSSCSKS*PPFTPF
Trigger: AAAAGGTGTGAATGGAGGCAAGGACTTTGAGCAAGA...GGAGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp CAGTTTGGAAGCTCAGGAATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGAGTGGTCTTCCAGGATGTCTaGCTCAAAGTCCTTGCCTCC +
Preference number: 5 (lower is better)
Translates to: QFGSSGMNGRGRVSQPGVVFQDV*LKVLAS
Trigger: GGAGGCAAGGACTTTGAGCAAGACATCCTGGAAGAC...CACTCCAGGCTGCGAGACTCTTCCTCTGCCATTCATTCCTGAGCTTCCAAACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp GGCCCAGGACTGAGGGGACTGGATAGAGAGGAACAAAGTGCAGAGTGGCTGGGCTCCAGCTGGAGGAACTaGCTTTCTGTGATCATTTTT +
Preference number: 5 (lower is better)
Translates to: GPGLRGLDREEQSAEWLGSSWRN*LSVIIF
Trigger: AAAAATGATCACAGAAAGCAAGTTCCTCCAGCTGGA...GCCCAGCCACTCTGCACTTTGTTCCTCTCTATCCAGTCCCCTCAGTCCTGGGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 90 bp ATGGCCTCCATGATATTCTTCCAGCCCTCCCGAAGGATGTCACCATaGCGATGGGCCAAATGGAATACTGTCTTGGCTGCTATGTGGGCT +
Preference number: 5 (lower is better)
Translates to: MASMIFFQPSRRMSP*RWAKWNTVLAAMWA
Trigger: AGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS GCA 90 bp CCTGCTCTCATTTTCAGCCTCTCTAACTGGTTCAGGGCTTTGGTCTaGTCCCCACTACTTAGCTCCAGTTTGCTGAGGAGACATGGAGAC +
Preference number: 5 (lower is better)
Translates to: PALIFSLSNWFRALV*SPLLSSSLLRRHGD
Trigger: GTCTCCATGTCTCCTCAGCAAACTGGAGCTAAGTAGTGGGGAGCAGACCAAAGCCCTGAACCAGTTAGAGAGGCTGAAAATGAGAGCAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176574.2
CDS CCA 90 bp ATGCAGTCCCATGTGGATCATCACCTCAGAGTTATGGCGGTCGTGTaGATTTGTGAGGGAGATAAGGAAGCGGAAGAGCTCACGGATGCA +
Preference number: 5 (lower is better)
Translates to: MQSHVDHHLRVMAVV*ICEGDKEAEELTDA
Trigger: TGCATCCGTGAGCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACACGACCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp GCCAGGCTGGAGGCAGAGGCTACAGGTTCTGCCTGCATCCACTCTCAGTTTGGAGACGAAGGAATACATTaGGCTCAATCTCTGAGAGTT +
Preference number: 5 (lower is better)
Translates to: ARLEAEATGSACIHSQFGDEGIH*AQSLRV
Trigger: AACTCTCAGAGATTGAGCCAAATGTATTCCTTCGTC...TCCAAACTGAGAGTGGATGCAGGCAGAACCTGTAGCCTCTGCCTCCAGCCTGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp CATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCTGTCCACCCTAGAGAGATGATGAGATaGTCAAACACATCGCTGAGG +
Preference number: 5 (lower is better)
Translates to: HMYMLLWAGPHRVLSVHPREMMR*SNTSLR
Trigger: CCTCAGCGATGTGTTTGACAATCTCATCATCTCTCT...AGGGTGGACAGATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp TCCAGGGCATCTAGCTTCTGTAGGTCATGCACCAGAAGGGCTCGCTGCAGATATAGCCCTGCTCCTGGTTaGGAGTTATCAATGTCATCC +
Preference number: 5 (lower is better)
Translates to: SRASSFCRSCTRRARCRYSPAPG*ELSMSS
Trigger: GGATGACATTGATAACTCCAAACCAGGAGCAGGGCT...ATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175747.2
CDS TCA 90 bp CCATTTGGGGTGGGCAGCTCTGAACCTGGTGTGACTTTGGTTGTATaGCGTGGAGGTCGAGGAGATCTTTTCTGTTTCTTCCACTTGGAC +
Preference number: 5 (lower is better)
Translates to: PFGVGSSEPGVTLVV*RGGRGDLFCFFHLD
Trigger: GTCCAAGTGGAAGAAACAGAAAAGATCTCCTCGACCTCCACGTCATACAACCAAAGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000176574.2
CDS TCA 90 bp AGGGTAATGTGGCTCCATTTGGGGTGGGCAGCTCTGAACCTGGTGTaGCTTTGGTTGTATGACGTGGAGGTCGAGGAGATCTTTTCTGTT +
Preference number: 5 (lower is better)
Translates to: RVMWLHLGWAALNLV*LWLYDVEVEEIFSV
Trigger: AACAGAAAAGATCTCCTCGACCTCCACGTCATACAACCAAAGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCCACATTACCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000176574.2
CDS TCA 90 bp CCTGGCTTTCCATGTTCTGTTGACAACCATCCTCCACTTGGAAAATaGAGGCCTCGGGCATCTAAGGCCACACCTGTGGATTTCCCATCA +
Preference number: 5 (lower is better)
Translates to: PGFPCSVDNHPPLGK*RPRASKATPVDFPS
Trigger: TGATGGGAAATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 90 bp GGTTCAGGGCTTTGGTCTGCTCCCCACTACTTAGCTCCAGTTTGCTaGGGAGACATGGAGACATCTTCTTCATGTTGGTTCCCACATAGC +
Preference number: 5 (lower is better)
Translates to: GSGLWSAPHYLAPVC*GDMETSSSCWFPHS
Trigger: GCTATGTGGGAACCAACATGAAGAAGATGTCTCCATGTCTCCTCAGCAAACTGGAGCTAAGTAGTGGGGAGCAGACCAAAGCCCTGAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176574.2
CDS GCA 90 bp CTCTTGGCCTCTTGGTTCTCTGTAGATGGACCCCGTACACTGGACTaGTCAGGACCACTCAATGTCAGCCAGCTTACAAAGCTAAGAACT +
Preference number: 5 (lower is better)
Translates to: LLASWFSVDGPRTLD*SGPLNVSQLTKLRT
Trigger: AGTTCTTAGCTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 90 bp ACTGTCAGCAAATGCAGTCCCATGTGGATCATCACCTCAGAGTTATaGCGGTCGTGTGGATTTGTGAGGGAGATAAGGAAGCGGAAGAGC +
Preference number: 5 (lower is better)
Translates to: TVSKCSPMWIITSEL*RSCGFVREIRKRKS
Trigger: GCTCTTCCGCTTCCTTATCTCCCTCACAAATCCACACGACCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 90 bp GATGACAGCATAGGCCAGGGCAAAGCAGGCATCACTATTAGCAAATaGGGAGCCATTACAACTCCTCCAGTGCTCAGTGAATACCTCCAG +
Preference number: 5 (lower is better)
Translates to: DDSIGQGKAGITISK*GAITTPPVLSEYLQ
Trigger: CTGGAGGTATTCACTGAGCACTGGAGGAGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTATGCTGTCATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp GAGGAAGAGTCTCGCAGCCTGGAGTGGATCCCAGCAGGGACTATAAAAGTTGTCCCCCTTCTTTGGTTTTaGGTTGAACTGCTCTGTACC +
Preference number: 5 (lower is better)
Translates to: EEESRSLEWIPAGTIKVVPLLWF*VELLCT
Trigger: GGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGG...GACAACTTTTATAGTCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTTCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 90 bp ATGCGGAGAGTCTTGACGCAGAGTTCAAAGTTGTCAGGGGTGATGTaGGCAGCATCTCGGACAATGAAGGACAGTGACTCCACACACTTA +
Preference number: 5 (lower is better)
Translates to: MRRVLTQSSKLSGVM*AASRTMKDSDSTHL
Trigger: TAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGACTCTCCGCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000175747.2
CDS GCA 90 bp AGAGACTCGGGGATAGCTTCTGACAGCAAATCACTGGAACCTGCATaGATGTACTTGTCCATGAAGTCTAGGATAGTGAGCCACAGGGCA +
Preference number: 5 (lower is better)
Translates to: RDSGIASDSKSLEPA*MYLSMKSRIVSHRA
Trigger: TGCCCTGTGGCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTGTCAGAAGCTATCCCCGAGTCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp ACCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCTTCTGTTTCTTCCACTaGGACGAGTCACTCATGCCT +
Preference number: 5 (lower is better)
Translates to: TVIIFHMYMLLWAGPHRVFCFFH*DESLMP
Trigger: AGGCATGAGTGACTCGTCCAAGTGGAAGAAACAGAA...GACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp CCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCCCTGCATGCATGTACTaGTCCATGAAGTCTAGGATA +
Preference number: 5 (lower is better)
Translates to: PLSFSICTCSCGQAPIESPACMY*SMKSRI
Trigger: TATCCTAGACTTCATGGACAAGTACATGCATGCAGG...GGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS GCA 90 bp GCTACCTCCGTGTTATCCATTGGGATGGTGAGGAGGCCTTTCTCCTaGAGAAATTGGATCCCCTTCTTTGGTTTTTGGTTGAACTGCTCT +
Preference number: 5 (lower is better)
Translates to: ATSVLSIGMVRRPFS*RNWIPFFGFWLNCS
Trigger: AGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000177512.3
CDS-3UTR CAA 90 bp ATGGCAGAGGAAGAGTCTCGCAGCCTGGAGTGGATCCCAGCAGGGACTATAAAACACATACAGATTCATTaGTTAAGTGGGTACCCACTG +
Preference number: 5 (lower is better)
Translates to: MAEEESRSLEWIPAGTIKHIQIH*LSGYPL
Trigger: CAGTGGGTACCCACTTAACAAATGAATCTGTATGTG...TTTTATAGTCCCTGCTGGGATCCACTCCAGGCTGCGAGACTCTTCCTCTGCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp TTCTCACGGACCAGACCTGTCTGCTCCTCAGGCATCACAATCTCCTCATTCTTGAACAGGTCCATGTTTTaGCGGTCACTCACAAACTCT +
Preference number: 5 (lower is better)
Translates to: FSRTRPVCSSGITISSFLNRSMF*RSLTNS
Trigger: AGAGTTTGTGAGTGACCGCAAAAACATGGACCTGTT...CAAGAATGAGGAGATTGTGATGCCTGAGGAGCAGACAGGTCTGGTCCGTGAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177512.3
CDS-3UTR CAA 90 bp AAAAGTCCACCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCACTAACCAACCACTGTaGACCATGTCAGCATCTGTG +
Preference number: 5 (lower is better)
Translates to: KSPPLSFSICTCSCGQAPTNQPL*TMSASV
Trigger: CACAGATGCTGACATGGTCAACAGTGGTTGGTTAGT...GGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGGTGGACTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS GCA 90 bp AAGGATGTCACCATGACGATGGGCCAAATGGAATACTGTCTTGGCTaGTATGTGGGCTTTAGGGTTGCTTCCAAATACACTGGGAAGGTT +
Preference number: 5 (lower is better)
Translates to: KDVTMTMGQMEYCLG*YVGFRVASKYTGKV
Trigger: AACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 90 bp GTGTTATCCATTGGGATGGTGAGGAGGCCTTTCTCCTGCAGAAATTaGATCCCCTTCTTTGGTTTTTGGTTGAACTGCTCTGTACCAGTG +
Preference number: 5 (lower is better)
Translates to: VLSIGMVRRPFSCRN*IPFFGFWLNCSVPV
Trigger: CACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000177512.3
CDS CCA 90 bp TTGTATGACGTGGAGGTCGAGGAGATCTTTTCTGTTTCTTCCACTTaGACGAGTCACTCATGCCTCCTGCTCTCATTTTCAGCCTCTCTA +
Preference number: 5 (lower is better)
Translates to: LYDVEVEEIFSVSST*TSHSCLLLSFSASL
Trigger: TAGAGAGGCTGAAAATGAGAGCAGGAGGCATGAGTGACTCGTCCAAGTGGAAGAAACAGAAAAGATCTCCTCGACCTCCACGTCATACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176574.2
CDS-3UTR CAA 90 bp CAGTTTGGAAGCTCAGGAATGAATGGCAGAGGAAGAGTCTCGCAGCCTGGAGTGATCTCCATGAGCTTTTaGATGTACATCTCTAACTGG +
Preference number: 5 (lower is better)
Translates to: QFGSSGMNGRGRVSQPGVISMSF*MYISNW
Trigger: CCAGTTAGAGATGTACATCAAAAAGCTCATGGAGAT...CACTCCAGGCTGCGAGACTCTTCCTCTGCCATTCATTCCTGAGCTTCCAAACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp CGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTAAATGGAATACTGTCTaGGCTGCTATGTGGGCTTTA +
Preference number: 5 (lower is better)
Translates to: RYHFPYVHAPVGRPPSSPKWNTV*AAMWAL
Trigger: TAAAGCCCACATAGCAGCCAAGACAGTATTCCATTT...AGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS GCA 90 bp AGTTCTGTCACACTGTTTAAGACCTCTTTCAGGTTACTGAAACTGTaGAGAAGGGGATCCCGTTCTTCATCCAGTGGTATATGGGTGCTC +
Preference number: 5 (lower is better)
Translates to: SSVTLFKTSFRLLKL*RRGSRSSSSGIWVL
Trigger: GAGCACCCATATACCACTGGATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAGAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 90 bp GATGGTGAGGAGGCCTTTCTCCTGCAGAAATTGGATCCCCTTCTTTaGTTTTTGGTTGAACTGCTCTGTACCAGTGATCAGCAGCTTTTT +
Preference number: 5 (lower is better)
Translates to: DGEEAFLLQKLDPLL*FLVELLCTSDQQLF
Trigger: AAAAAGCTGCTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000177512.3
CDS-3UTR CAA 90 bp CAGGGTCATGGGTGCATTCTGCTTTCGAACATTGTGGTTATGTTGGTCAGTGTTCCCCTTCTTTGGTTTTaGGTTGAACTGCTCTGTACC +
Preference number: 5 (lower is better)
Translates to: QGHGCILLSNIVVMLVSVPLLWF*VELLCT
Trigger: GGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGG...AACACTGACCAACATAACCACAATGTTCGAAAGCAGAATGCACCCATGACCCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177512.3
CDS-3UTR CAA 90 bp AAAAGTCCACCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATATTTTCCAAAAGCTaGGTCAGGAGAGGAAACAGC +
Preference number: 5 (lower is better)
Translates to: KSPPLSFSICTCSCGQAPIFSKS*VRRGNS
Trigger: GCTGTTTCCTCTCCTGACCAAGCTTTTGGAAAATAT...GGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATAACGGTGGACTTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 90 bp TCTCTGAGAGTTCTGTCACACTGTTTAAGACCTCTTTCAGGTTACTaGAACTGTGCAGAAGGGGATCCCGTTCTTCATCCAGTGGTATAT +
Preference number: 5 (lower is better)
Translates to: SLRVLSHCLRPLSGY*NCAEGDPVLHPVVY
Trigger: ATATACCACTGGATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAGAACTCTCAGAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp TATCATTTTCCATATGTACATGCTCCTGTGGGCAGGCCCCCATCGAGTCCTATCAACATTGTGGTTATGTaGGTCAGTGTTAAGCATGAT +
Preference number: 5 (lower is better)
Translates to: YHFPYVHAPVGRPPSSPINIVVM*VSVKHD
Trigger: ATCATGCTTAACACTGACCAACATAACCACAATGTT...GATAGGACTCGATGGGGGCCTGCCCACAGGAGCATGTACATATGGAAAATGATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp TACCATAAAAAGTCCACCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAATGTGGGCTTTAGGGTaGCTTCCAAATACACTGGGA +
Preference number: 5 (lower is better)
Translates to: YHKKSTVIIFHMYMLLWAMWALG*LPNTLG
Trigger: TCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACAT...TGCCCACAGGAGCATGTACATATGGAAAATGATAACGGTGGACTTTTTATGGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS-3UTR CAA 90 bp TACCATAAAAAGTCCACCGTTATCATTTTCCATATGTACATGCTCCTGTGGGCAACACCTTTTAGGTTTTaGCGAAATTCCTCCAGGGTC +
Preference number: 5 (lower is better)
Translates to: YHKKSTVIIFHMYMLLWATPFRF*RNSSRV
Trigger: GACCCTGGAGGAATTTCGCAAAAACCTAAAAGGTGT...TGCCCACAGGAGCATGTACATATGGAAAATGATAACGGTGGACTTTTTATGGTA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 72 bp GCCACCTCCCTCCAGGTGGCGTTGCTCCTCTGCCCATaGGCTGTAGATAGAGGCTGCCCGTGTGTGCAGGGT +
Preference number: 6 (lower is better)
Translates to: ATSLQVALLLCP*AVDRGCPCVQG
Trigger: ACCCTGCACACACGGGCAGCCTCTATCTACAGCTCATGGGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 72 bp TGGGCCCAGAGGGTGCGTGAGTCAGCTTCAATCTTCTaGCCACCTCCCTCCAGGTGGCGTTGCTCCTCTGCC +
Preference number: 6 (lower is better)
Translates to: WAQRVRESASIF*PPPSRWRCSSA
Trigger: GGCAGAGGAGCAACGCCACCTGGAGGGAGGTGGCCAGAAGATTGAAGCTGACTCACGCACCCTCTGGGCCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 72 bp GGTCAAGGGCTGCAGGATCAGTGGGGGCTGGGTCAGTaGGGGAGGTCCCTCTTGGGCAGGACTCAGTTTGCT +
Preference number: 6 (lower is better)
Translates to: GQGLQDQWGLGQ*GRSLLGRTQFA
Trigger: AGCAAACTGAGTCCTGCCCAAGAGGGACCTCCCCCACTGACCCAGCCCCCACTGATCCTGCAGCCCTTGACC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 72 bp AAGCGCCCATCTCACTGCTCCCAGGCTCACTGGTGGTaGTCTCCCTTGGGGAGCCAGCTTGCTCCAGGTCAG +
Preference number: 6 (lower is better)
Translates to: KRPSHCSQAHWW*SPLGSQLAPGQ
Trigger: CTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAGATGGGCGCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS GCA 72 bp TGCACCAGAAGGGCTCGCTGCAGATATGTCAGGGCCTaGATCCGTACCTGGCGCCGGGCGTCACAGCATAAG +
Preference number: 6 (lower is better)
Translates to: CTRRARCRYVRA*IRTWRRASQHK
Trigger: CTTATGCTGTGACGCCCGGCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 72 bp CTCACTGCTCCCAGGCTCACTGGTGGTGATCTCCCTTaGGGAGCCAGCTTGCTCCAGGTCAGTGAGGTCCTC +
Preference number: 6 (lower is better)
Translates to: LTAPRLTGGDLP*GASLLQVSEVL
Trigger: GAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGTGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CAA 90 bp ACTGCTCCCAGGCTCACTGGTGGTGATCTCCCTTGGGGAGCCAGCTaGCTCCAGGTCAGTGAGGTCCTCCTTGGAGGTAGTCTGGGAGGA +
Preference number: 6 (lower is better)
Translates to: TAPRLTGGDLPWGAS*LQVSEVLLGGSLGG
Trigger: TCCTCCCAGACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCTGGGAGCAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000176574.2
CDS GCA 72 bp GGCTCACTGGTGGTGATCTCCCTTGGGGAGCCAGCTTaGTCCAGGTCAGTGAGGTCCTCCTTGGAGGTAGTC +
Preference number: 6 (lower is better)
Translates to: GSLVVISLGEPA*SRSVRSSLEVV
Trigger: GACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000176574.2
CDS CCA 72 bp ACTGTGCTCCCGCATCAGGAGCATCAGCCCTGGCTGTaGCTTGAAGAGCATCTGGAGGCTTCACGCCTGAGC +
Preference number: 6 (lower is better)
Translates to: TVLPHQEHQPWL*LEEHLEASRLS
Trigger: GCTCAGGCGTGAAGCCTCCAGATGCTCTTCAAGCCACAGCCAGGGCTGATGCTCCTGATGCGGGAGCACAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 72 bp ACCCCCATTTCTGAGGGTATCTCTGGGAGAGGTGGATaGCCAGGCATCCTGGGGTCACCAGCAGCAGAAGTC +
Preference number: 6 (lower is better)
Translates to: TPISEGISGRGG*PGILGSPAAEV
Trigger: GACTTCTGCTGCTGGTGACCCCAGGATGCCTGGCCATCCACCTCTCCCAGAGATACCCTCAGAAATGGGGGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CAA 72 bp AGGCTCACTGGTGGTGATCTCCCTTGGGGAGCCAGCTaGCTCCAGGTCAGTGAGGTCCTCCTTGGAGGTAGT +
Preference number: 6 (lower is better)
Translates to: RLTGGDLPWGAS*LQVSEVLLGGS
Trigger: ACTACCTCCAAGGAGGACCTCACTGACCTGGAGCAAGCTGGCTCCCCAAGGGAGATCACCACCAGTGAGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000176574.2
CDS TCA 72 bp GAGGCTTCACGCCTGAGCCAATGCACTCCAGCAATGTaGAGAGGGTGGCCCAGTCATCACCCGAGTGGATGT +
Preference number: 6 (lower is better)
Translates to: EASRLSQCTPAM*RGWPSHHPSGC
Trigger: ACATCCACTCGGGTGATGACTGGGCCACCCTCTTCACATTGCTGGAGTGCATTGGCTCAGGCGTGAAGCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS GCA 72 bp GGCAGCATTGGTCTTGAGGAGTTCATGCAGCCCATATaGAACCTGGTGGCTGACTCTGGACAGCACGCTGGG +
Preference number: 6 (lower is better)
Translates to: GSIGLEEFMQPI*NLVADSGQHAG
Trigger: CCCAGCGTGCTGTCCAGAGTCAGCCACCAGGTTGCATATGGGCTGCATGAACTCCTCAAGACCAATGCTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS GCA 72 bp TCTAGCTTCTGTAGGTCATGCACCAGAAGGGCTCGCTaGAGATATGTCAGGGCCTGCATCCGTACCTGGCGC +
Preference number: 6 (lower is better)
Translates to: SSFCRSCTRRAR*RYVRACIRTWR
Trigger: GCGCCAGGTACGGATGCAGGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS GCA 72 bp GACTCCCACTCCAGGGCATCTAGCTTCTGTAGGTCATaGACCAGAAGGGCTCGCTGCAGATATGTCAGGGCC +
Preference number: 6 (lower is better)
Translates to: DSHSRASSFCRS*TRRARCRYVRA
Trigger: GGCCCTGACATATCTGCAGCGAGCCCTTCTGGTGCATGACCTACAGAAGCTAGATGCCCTGGAGTGGGAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS GCA 72 bp TGCGGTTCCGCAGGCATGGGGTCCTGGATGACAGTCTaGTTGAAGAGCTCGTCACGCAAGTGTGGCAAGAAG +
Preference number: 6 (lower is better)
Translates to: CGSAGMGSWMTV*LKSSSRKCGKK
Trigger: CTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGACCCCATGCCTGCGGAACCGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 72 bp CGGCACATCTCATCCTTAATGAGACCCAAGAGGGTCTaGCACTGGGCCACAGGCGCTGACTCAAGAGCCACT +
Preference number: 6 (lower is better)
Translates to: RHISSLMRPKRV*HWATGADSRAT
Trigger: AGTGGCTCTTGAGTCAGCGCCTGTGGCCCAGTGCCAGACCCTCTTGGGTCTCATTAAGGATGAGATGTGCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CAA 72 bp GGTTCCGCAGGCATGGGGTCCTGGATGACAGTCTGCTaGAAGAGCTCGTCACGCAAGTGTGGCAAGAAGCAG +
Preference number: 6 (lower is better)
Translates to: GSAGMGSWMTVC*KSSSRKCGKKQ
Trigger: CTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATCCAGGACCCCATGCCTGCGGAACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CAA 72 bp GTGAAGAGGGTGGCCCAGTCATCACCCGAGTGGATGTaGGCAGCATTGGTCTTGAGGAGTTCATGCAGCCCA +
Preference number: 6 (lower is better)
Translates to: VKRVAQSSPEWM*AALVLRSSCSP
Trigger: TGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACTCGGGTGATGACTGGGCCACCCTCTTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CAA 72 bp AGCAGCAGAAGTCAGGTGAGTAGAGGCCAGAGGTTTTaGACTGTGCGGTTCCGCAGGCATGGGGTCCTGGAT +
Preference number: 6 (lower is better)
Translates to: SSRSQVSRGQRF*TVRFRRHGVLD
Trigger: ATCCAGGACCCCATGCCTGCGGAACCGCACAGTCAAAAACCTCTGGCCTCTACTCACCTGACTTCTGCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 72 bp TCATCACTGGCAGGATCTGTGCCCACAAAACGGGCGTaGGTGACAGCATCTGCCATGTTCTCCATGCCCTCT +
Preference number: 6 (lower is better)
Translates to: SSLAGSVPTKRA*VTASAMFSMPS
Trigger: AGAGGGCATGGAGAACATGGCAGATGCTGTCACTCACGCCCGTTTTGTGGGCACAGATCCTGCCAGTGATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 72 bp TGGCTCCATTTGGGGTGGGCAGCTCTGAACCTGGTGTaGCTTTGGTTGTATGACGTGGAGGTCGAGGAGATC +
Preference number: 6 (lower is better)
Translates to: WLHLGWAALNLV*LWLYDVEVEEI
Trigger: GATCTCCTCGACCTCCACGTCATACAACCAAAGTCACACCAGGTTCAGAGCTGCCCACCCCAAATGGAGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000176574.2
CDS TCA 72 bp CTCCTCCAGTGCTCAGTGAATACCTCCAGCAACCTGTaGATAACGGGTGCTTCCCCAGGCAAACGGAAGGCT +
Preference number: 6 (lower is better)
Translates to: LLQCSVNTSSNL*ITGASPGKRKA
Trigger: AGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 72 bp TATCTTGCCAGGCCTGCCATGGTCTGTGTAGACTTCTaGGTCGGAAGTGTACCCTCGGTCCAGGCTGACATC +
Preference number: 6 (lower is better)
Translates to: YLARPAMVCVDF*VGSVPSVQADI
Trigger: GATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCTACACAGACCATGGCAGGCCTGGCAAGATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 72 bp CACCTCCAGTGCTCAGTGAATACCTCCAGCAACCTGTaGATAACGGGTGCTTCCCCAGGCAAACGGAAGGCT +
Preference number: 6 (lower is better)
Translates to: HLQCSVNTSSNL*ITGASPGKRKA
Trigger: AGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAGCACTGGAGGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177512.3
CDS GCA 72 bp GAGTGCGTAGGACAGGAACTTGTTGACAGAGGTGAGTaGCAGGCCGGTGATAGGACCAGTGGTGTCTTCAGA +
Preference number: 6 (lower is better)
Translates to: ECVGQELVDRGE*QAGDRTSGVFR
Trigger: TCTGAAGACACCACTGGTCCTATCACCGGCCTGGCACTCACCTCTGTCAACAAGTTCCTGTCCTACGCACTC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS GCA 72 bp GGTAATCTCCCAGAGAGCAGAGGGGCCTCCTCCTCTTaGATCTGCACTGTGGAAAATCTCCGCTGTGTCCAT +
Preference number: 6 (lower is better)
Translates to: GNLPESRGASSS*ICTVENLRCVH
Trigger: ATGGACACAGCGGAGATTTTCCACAGTGCAGATGCAAGAGGAGGAGGCCCCTCTGCTCTCTGGGAGATTACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 72 bp TTGGTCTTGAGGAGTTCATGCAGCCCATATGCAACCTaGTGGCTGACTCTGGACAGCACGCTGGGCTTCATC +
Preference number: 6 (lower is better)
Translates to: LVLRSSCSPYAT*WLTLDSTLGFI
Trigger: GATGAAGCCCAGCGTGCTGTCCAGAGTCAGCCACCAGGTTGCATATGGGCTGCATGAACTCCTCAAGACCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CAA 72 bp GTCGGAAGTGTACCCTCGGTCCAGGCTGACATCATTTaGATGGTAGGATGGGAGCTCACTGTCCGACTGTGC +
Preference number: 6 (lower is better)
Translates to: VGSVPSVQADII*MVGWELTVRLC
Trigger: GCACAGTCGGACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CAA 90 bp TGGGTCACATTGCTTGATACAGTCCAAGGCCACTCTCTTGGCCTCTaGGTTCTCTGTAGATGGACCCCGTACACTGGACTGCTCAGGACC +
Preference number: 6 (lower is better)
Translates to: WVTLLDTVQGHSLGL*VLCRWTPYTGLLRT
Trigger: GGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGAGGCCAAGAGAGTGGCCTTGGACTGTATCAAGCAATGTGACCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CAA 90 bp TCCAGCAATGTGAAGAGGGTGGCCCAGTCATCACCCGAGTGGATGTaGGCAGCATTGGTCTTGAGGAGTTCATGCAGCCCATATGCAACC +
Preference number: 6 (lower is better)
Translates to: SSNVKRVAQSSPEWM*AALVLRSSCSPYAT
Trigger: GGTTGCATATGGGCTGCATGAACTCCTCAAGACCAATGCTGCCAACATCCACTCGGGTGATGACTGGGCCACCCTCTTCACATTGCTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 72 bp TCCGGGTCTCCTCCATCCCGCCCACATCTGCAGGGCTaGTATTTTCCAAAAGCTTGGTCAGGAGAGGAAACA +
Preference number: 6 (lower is better)
Translates to: SGSPPSRPHLQG*YFPKAWSGEET
Trigger: TGTTTCCTCTCCTGACCAAGCTTTTGGAAAATATCAGCCCTGCAGATGTGGGCGGGATGGAGGAGACCCGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS GCA 72 bp CTCAGTGAATACCTCCAGCAACCTGTGAATAACGGGTaGTTCCCCAGGCAAACGGAAGGCTTCCAGGTAGAG +
Preference number: 6 (lower is better)
Translates to: LSEYLQQPVNNG*FPRQTEGFQVE
Trigger: CTCTACCTGGAAGCCTTCCGTTTGCCTGGGGAAGCACCCGTTATTCACAGGTTGCTGGAGGTATTCACTGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000177512.3
CDS CCA 72 bp CAGCAGGGGATGTGCATTCCTCTAACACTTCAGGGATaGACTCCACCGATGCTGACTGGGCCTTCTCTACAT +
Preference number: 6 (lower is better)
Translates to: QQGMCIPLTLQG*TPPMLTGPSLH
Trigger: ATGTAGAGAAGGCCCAGTCAGCATCGGTGGAGTCCATCCCTGAAGTGTTAGAGGAATGCACATCCCCTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 72 bp AAGCAGGCGATTCCTTGTAATAAAGGGCACCAGCAGTaGGCCCAGAGGGTGCGTGAGTCAGCTTCAATCTTC +
Preference number: 6 (lower is better)
Translates to: KQAIPCNKGHQQ*AQRVRESASIF
Trigger: GAAGATTGAAGCTGACTCACGCACCCTCTGGGCCCACTGCTGGTGCCCTTTATTACAAGGAATCGCCTGCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 72 bp GATGACAGTCTGCTTGAAGAGCTCGTCACGCAAGTGTaGCAAGAAGCAGTCGATGCGCTCCCAGGTAATCTC +
Preference number: 6 (lower is better)
Translates to: DDSLLEELVTQV*QEAVDALPGNL
Trigger: GAGATTACCTGGGAGCGCATCGACTGCTTCTTGCCACACTTGCGTGACGAGCTCTTCAAGCAGACTGTCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 72 bp GGGAGGATAATTCCAGGCCACTATCTGTACAGGGACTaGCTACTGTCGAGGCAGCTTCTGAACTTGCAGAGG +
Preference number: 6 (lower is better)
Translates to: GRIIPGHYLYRD*LLSRQLLNLQR
Trigger: CCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGATAGTGGCCTGGAATTATCCTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000176574.2
CDS CCA 72 bp GACTCAAGAGCCACTGTCAGCAAATGCAGTCCCATGTaGATCATCACCTCAGAGTTATGGCGGTCGTGTGGA +
Preference number: 6 (lower is better)
Translates to: DSRATVSKCSPM*IITSELWRSCG
Trigger: TCCACACGACCGCCATAACTCTGAGGTGATGATCCACATGGGACTGCATTTGCTGACAGTGGCTCTTGAGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 72 bp TTCTCGGAGCCATTGGGCTACCTCCGTGTTATCCATTaGGATGGTGAGGAGGCCTTTCTCCTGCAGAAATTG +
Preference number: 6 (lower is better)
Translates to: FSEPLGYLRVIH*DGEEAFLLQKL
Trigger: CAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACGGAGGTAGCCCAATGGCTCCGAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000177512.3
CDS CCA 72 bp TTCATCAGTAACAAGATGCGCAGAGAGAGCAGGACCTaGCCACTAATCTCTTCTCTCCGGAGTAGCCGGATG +
Preference number: 6 (lower is better)
Translates to: FISNKMRRESRT*PLISSLRSSRM
Trigger: CATCCGGCTACTCCGGAGAGAAGAGATTAGTGGCCAGGTCCTGCTCTCTCTGCGCATCTTGTTACTGATGAA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CAA 72 bp CGGTTGGATGGTGTCTCCTCCCGCTGTAGAGAGATCTaGCCATTGGGATCCACAAAATCTTCTACCTCCACC +
Preference number: 6 (lower is better)
Translates to: RLDGVSSRCREI*PLGSTKSSTST
Trigger: GGTGGAGGTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CAA 90 bp AAGGCCACACCTGTGGATTTCCCATCACTGGTTGCTCTCTCAGACTaGTTAGTTTCTGGGTTGCCATCCACTGCCTCAAAGCCAGGTCTG +
Preference number: 6 (lower is better)
Translates to: KATPVDFPSLVALSD*LVSGLPSTASKPGL
Trigger: CAGACCTGGCTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGTCTGAGAGAGCAACCAGTGATGGGAAATCCACAGGTGTGGCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CAA 90 bp CACCAGCTTCCTCCAGATCTCTGCACCCTGGCTTTCCATGTTCTGTaGACAACCATCCTCCACTTGGAAAATGAAGGCCTCGGGCATCTA +
Preference number: 6 (lower is better)
Translates to: HQLPPDLCTLAFHVL*TTILHLENEGLGHL
Trigger: TAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAGGAAGCTGGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CAA 90 bp GACTCTCCTCGGTTGGATGGTGTCTCCTCCCGCTGTAGAGAGATCTaGCCATTGGGATCCACAAAATCTTCTACCTCCACCATAGCCTTG +
Preference number: 6 (lower is better)
Translates to: DSPRLDGVSSRCREI*PLGSTKSSTSTIAL
Trigger: CAAGGCTATGGTGGAGGTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCGAGGAGAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CAA 90 bp CCTCGGTTGGATGGTGTCTCCTCCCGCTGTAGAGAGATCTTGCCATaGGGATCCACAAAATCTTCTACCTCCACCATAGCCTTGGGTAAA +
Preference number: 6 (lower is better)
Translates to: PRLDGVSSRCREILP*GSTKSSTSTIALGK
Trigger: TTTACCCAAGGCTATGGTGGAGGTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACCGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 72 bp CCATGTTCTGTTGACAACCATCCTCCACTTGGAAAATaGAGGCCTCGGGCATCTAAGGCCACACCTGTGGAT +
Preference number: 6 (lower is better)
Translates to: PCSVDNHPPLGK*RPRASKATPVD
Trigger: ATCCACAGGTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 72 bp CTCCAGATCTCTGCACCCTGGCTTTCCATGTTCTGTTaGCAACCATCCTCCACTTGGAAAATGAAGGCCTCG +
Preference number: 6 (lower is better)
Translates to: LQISAPWLSMFC*QPSSTWKMKAS
Trigger: CGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAGGGTGCAGAGATCTGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 72 bp AAAGTTGGGCTCGGAAAAGCTGCAACATGGCCTCCATaGTATTCTTCCAGCCCTCCCGAAGGATGTCACCAT +
Preference number: 6 (lower is better)
Translates to: KVGLGKAATWPP*YSSSPPEGCHH
Trigger: ATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 72 bp AGACTTCTGAGTCGGAAGTGTACCCTCGGTCCAGGCTaGCATCATTTTGATGGTAGGATGGGAGCTCACTGT +
Preference number: 6 (lower is better)
Translates to: RLLSRKCTLGPG*HHFDGRMGAHC
Trigger: ACAGTGAGCTCCCATCCTACCATCAAAATGATGTCAGCCTGGACCGAGGGTACACTTCCGACTCAGAAGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 72 bp GGTGATGTGAGCAGCATCTCGGACAATGAAGGACAGTaGCTCCACACACTTAAGCAGGGACTTAGTGTCGTG +
Preference number: 6 (lower is better)
Translates to: GDVSSISDNEGQ*LHTLKQGLSVV
Trigger: CACGACACTAAGTCCCTGCTTAAGTGTGTGGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000175747.2
CDS TCA 72 bp GTCTTGACGCAGAGTTCAAAGTTGTCAGGGGTGATGTaGGCAGCATCTCGGACAATGAAGGACAGTGACTCC +
Preference number: 6 (lower is better)
Translates to: VLTQSSKLSGVM*AASRTMKDSDS
Trigger: GGAGTCACTGTCCTTCATTGTCCGAGATGCTGCTCACATCACCCCTGACAACTTTGAACTCTGCGTCAAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000175747.2
CDS GCA 72 bp GGTTGGATGGTGTCTCCTCCCGCTGTAGAGAGATCTTaGCATTGGGATCCACAAAATCTTCTACCTCCACCA +
Preference number: 6 (lower is better)
Translates to: GWMVSPPAVERS*HWDPQNLLPPP
Trigger: TGGTGGAGGTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATCCAACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS GCA 72 bp TCTTGGTTCTCTGTAGATGGACCCCGTACACTGGACTaGTCAGGACCACTCAATGTCAGCCAGCTTACAAAG +
Preference number: 6 (lower is better)
Translates to: SWFSVDGPRTLD*SGPLNVSQLTK
Trigger: CTTTGTAAGCTGGCTGACATTGAGTGGTCCTGAGCAGTCCAGTGTACGGGGTCCATCTACAGAGAACCAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 72 bp AAGCAGGCGATTCCTGTAAAGACACCGTATGGTAGCTaGCAGGCACACCTTCATCCTCCTCTTCATCACTGT +
Preference number: 6 (lower is better)
Translates to: KQAIPVKTPYGS*QAHLHPPLHHC
Trigger: ACAGTGATGAAGAGGAGGATGAAGGTGTGCCTGCCAGCTACCATACGGTGTCTTTACAGGAATCGCCTGCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000175747.2
CDS CAA 72 bp CTGGCTTTCCATGTTCTGTTGACAACCATCCTCCACTaGGAAAATGAAGGCCTCGGGCATCTAAGGCCACAC +
Preference number: 6 (lower is better)
Translates to: LAFHVLLTTILH*ENEGLGHLRPH
Trigger: GTGTGGCCTTAGATGCCCGAGGCCTTCATTTTCCAAGTGGAGGATGGTTGTCAACAGAACATGGAAAGCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CAA 72 bp GATGGTGTCTCCTCCCGCTGTAGAGAGATCTTGCCATaGGGATCCACAAAATCTTCTACCTCCACCATAGCC +
Preference number: 6 (lower is better)
Translates to: DGVSSRCREILP*GSTKSSTSTIA
Trigger: GGCTATGGTGGAGGTAGAAGATTTTGTGGATCCCAATGGCAAGATCTCTCTACAGCGGGAGGAGACACCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CAA 72 bp GCTCTCATTTTCAGCCTCTCTAACTGGTTCAGGGCTTaGGTCTGCTCCCCACTACTTAGCTCCAGTTTGCTG +
Preference number: 6 (lower is better)
Translates to: ALIFSLSNWFRA*VCSPLLSSSLL
Trigger: CAGCAAACTGGAGCTAAGTAGTGGGGAGCAGACCAAAGCCCTGAACCAGTTAGAGAGGCTGAAAATGAGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000176574.2
CDS CAA 90 bp AACTGGTTCAGGGCTTTGGTCTGCTCCCCACTACTTAGCTCCAGTTaGCTGAGGAGACATGGAGACATCTTCTTCATGTTGGTTCCCACA +
Preference number: 6 (lower is better)
Translates to: NWFRALVCSPLLSSS*LRRHGDIFFMLVPT
Trigger: TGTGGGAACCAACATGAAGAAGATGTCTCCATGTCTCCTCAGCAAACTGGAGCTAAGTAGTGGGGAGCAGACCAAAGCCCTGAACCAGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176574.2
CDS TCA 72 bp GTGGGCAGCTCTGAACCTGGTGTGACTTTGGTTGTATaGCGTGGAGGTCGAGGAGATCTTTTCTGTTTCTTC +
Preference number: 6 (lower is better)
Translates to: VGSSEPGVTLVV*RGGRGDLFCFF
Trigger: GAAGAAACAGAAAAGATCTCCTCGACCTCCACGTCATACAACCAAAGTCACACCAGGTTCAGAGCTGCCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000176574.2
CDS TCA 72 bp ATCTGTACAGGGACTGACTACTGTCGAGGCAGCTTCTaGACTTGCAGAGGAGATGGATGTGGGTGCATCAAT +
Preference number: 6 (lower is better)
Translates to: ICTGTDYCRGSF*TCRGDGCGCIN
Trigger: ATTGATGCACCCACATCCATCTCCTCTGCAAGTTCAGAAGCTGCCTCGACAGTAGTCAGTCCCTGTACAGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000176574.2
CDS TCA 72 bp ATGATATTCTTCCAGCCCTCCCGAAGGATGTCACCATaGCGATGGGCCAAATGGAATACTGTCTTGGCTGCT +
Preference number: 6 (lower is better)
Translates to: MIFFQPSRRMSP*RWAKWNTVLAA
Trigger: AGCAGCCAAGACAGTATTCCATTTGGCCCATCGTCATGGTGACATCCTTCGGGAGGGCTGGAAGAATATCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 72 bp ATAGGCCAGGGCAAAGCAGGCATCACTATTAGCAAATaGGGAGCCATTACAACTCCTCCAGTGCTCAGTGAA +
Preference number: 6 (lower is better)
Translates to: IGQGKAGITISK*GAITTPPVLSE
Trigger: TTCACTGAGCACTGGAGGAGTTGTAATGGCTCCCCATTTGCTAATAGTGATGCCTGCTTTGCCCTGGCCTAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 72 bp CGATGGGCCAAATGGAATACTGTCTTGGCTGCTATGTaGGCTTTAGGGTTGCTTCCAAATACACTGGGAAGG +
Preference number: 6 (lower is better)
Translates to: RWAKWNTVLAAM*ALGLLPNTLGR
Trigger: CCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCATCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CAA 72 bp CCTGTGGATTTCCCATCACTGGTTGCTCTCTCAGACTaGTTAGTTTCTGGGTTGCCATCCACTGCCTCAAAG +
Preference number: 6 (lower is better)
Translates to: PVDFPSLVALSD*LVSGLPSTASK
Trigger: CTTTGAGGCAGTGGATGGCAACCCAGAAACTAACAAGTCTGAGAGAGCAACCAGTGATGGGAAATCCACAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CAA 72 bp AGGGCTTTGGTCTGCTCCCCACTACTTAGCTCCAGTTaGCTGAGGAGACATGGAGACATCTTCTTCATGTTG +
Preference number: 6 (lower is better)
Translates to: RALVCSPLLSSS*LRRHGDIFFML
Trigger: CAACATGAAGAAGATGTCTCCATGTCTCCTCAGCAAACTGGAGCTAAGTAGTGGGGAGCAGACCAAAGCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176574.2
CDS TCA 72 bp CTTTGGTCTGCTCCCCACTACTTAGCTCCAGTTTGCTaGGGAGACATGGAGACATCTTCTTCATGTTGGTTC +
Preference number: 6 (lower is better)
Translates to: LWSAPHYLAPVC*GDMETSSSCWF
Trigger: GAACCAACATGAAGAAGATGTCTCCATGTCTCCTCAGCAAACTGGAGCTAAGTAGTGGGGAGCAGACCAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000176574.2
CDS CAA 72 bp CATTGGGATGGTGAGGAGGCCTTTCTCCTGCAGAAATaGGATCCCCTTCTTTGGTTTTTGGTTGAACTGCTC +
Preference number: 6 (lower is better)
Translates to: HWDGEEAFLLQK*DPLLWFLVELL
Trigger: GAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000177512.3
CDS CAA 90 bp CGTGTTATCCATTGGGATGGTGAGGAGGCCTTTCTCCTGCAGAAATaGGATCCCCTTCTTTGGTTTTTGGTTGAACTGCTCTGTACCAGT +
Preference number: 6 (lower is better)
Translates to: RVIHWDGEEAFLLQK*DPLLWFLVELLCTS
Trigger: ACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACACG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000177512.3
CDS GCA 72 bp GTGTTATCCATTGGGATGGTGAGGAGGCCTTTCTCCTaGAGAAATTGGATCCCCTTCTTTGGTTTTTGGTTG +
Preference number: 6 (lower is better)
Translates to: VLSIGMVRRPFS*RNWIPFFGFWL
Trigger: CAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAATGGATAACAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000177512.3
CDS GCA 72 bp GGGATAGCTTCTGACAGCAAATCACTGGAACCTGCATaGATGTACTTGTCCATGAAGTCTAGGATAGTGAGC +
Preference number: 6 (lower is better)
Translates to: GIASDSKSLEPA*MYLSMKSRIVS
Trigger: GCTCACTATCCTAGACTTCATGGACAAGTACATGCATGCAGGTTCCAGTGATTTGCTGTCAGAAGCTATCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CCA 72 bp GAGGCCTTTCTCCTGCAGAAATTGGATCCCCTTCTTTaGTTTTTGGTTGAACTGCTCTGTACCAGTGATCAG +
Preference number: 6 (lower is better)
Translates to: EAFLLQKLDPLL*FLVELLCTSDQ
Trigger: CTGATCACTGGTACAGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000177512.3
CDS CCA 72 bp ATTGGGATGGTGAGGAGGCCTTTCTCCTGCAGAAATTaGATCCCCTTCTTTGGTTTTTGGTTGAACTGCTCT +
Preference number: 6 (lower is better)
Translates to: IGMVRRPFSCRN*IPFFGFWLNCS
Trigger: AGAGCAGTTCAACCAAAAACCAAAGAAGGGGATCCAATTTCTGCAGGAGAAAGGCCTCCTCACCATCCCAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000177512.3
CDS CCA 72 bp AAATCTTCTACCTCCACCATAGCCTTGGGTAAAAGTTaGGCTCGGAAAAGCTGCAACATGGCCTCCATGATA +
Preference number: 6 (lower is better)
Translates to: KSSTSTIALGKS*ARKSCNMASMI
Trigger: TATCATGGAGGCCATGTTGCAGCTTTTCCGAGCCCAACTTTTACCCAAGGCTATGGTGGAGGTAGAAGATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CAA 90 bp TGGGCCAAATGGAATACTGTCTTGGCTGCTATGTGGGCTTTAGGGTaGCTTCCAAATACACTGGGAAGGTTCTCAATAGACTCACTACTT +
Preference number: 6 (lower is better)
Translates to: WAKWNTVLAAMWALG*LPNTLGRFSIDSLL
Trigger: AAGTAGTGAGTCTATTGAGAACCTTCCCAGTGTATTTGGAAGCAACCCTAAAGCCCACATAGCAGCCAAGACAGTATTCCATTTGGCCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 72 bp GTTCTGTCACACTGTTTAAGACCTCTTTCAGGTTACTaGAACTGTGCAGAAGGGGATCCCGTTCTTCATCCA +
Preference number: 6 (lower is better)
Translates to: VLSHCLRPLSGY*NCAEGDPVLHP
Trigger: TGGATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGTGACAGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS TCA 72 bp TTTTTCTTGAAGCGGTTCCCTTTGCTGTCATACTTATaGCTCTTGCTGCGTTTATCCTGGGACTTGCACCCA +
Preference number: 6 (lower is better)
Translates to: FFLKRFPLLSYL*LLLRLSWDLHP
Trigger: TGGGTGCAAGTCCCAGGATAAACGCAGCAAGAGTCATAAGTATGACAGCAAAGGGAACCGCTTCAAGAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026254.14
ENSMUST00000175747.2
CDS CAA 90 bp ACACTGGGAAGGTTCTCAATAGACTCACTACTTAGAGCTGTGAATTaGCACAGAGAGATGATGAGATTGTCAAACACATCGCTGAGGCCA +
Preference number: 6 (lower is better)
Translates to: TLGRFSIDSLLRAVN*HREMMRLSNTSLRP
Trigger: TGGCCTCAGCGATGTGTTTGACAATCTCATCATCTCTCTGTGCAAATTCACAGCTCTAAGTAGTGAGTCTATTGAGAACCTTCCCAGTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS GCA 72 bp ACACTGTTTAAGACCTCTTTCAGGTTACTGAAACTGTaGAGAAGGGGATCCCGTTCTTCATCCAGTGGTATA +
Preference number: 6 (lower is better)
Translates to: TLFKTSFRLLKL*RRGSRSSSSGI
Trigger: TATACCACTGGATGAAGAACGGGATCCCCTTCTGCACAGTTTCAGTAACCTGAAAGAGGTCTTAAACAGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14
CDS CAA 72 bp TCCATGAGCTTTTTGATGTACATCTCTAACTGGAACTaGAGGTGTTCCCGCATGCTCTCGAAGAGTAAGAAG +
Preference number: 6 (lower is better)
Translates to: SMSFLMYISNWN*RCSRMLSKSKK
Trigger: CTTCTTACTCTTCGAGAGCATGCGGGAACACCTCAAGTTCCAGTTAGAGATGTACATCAAAAAGCTCATGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026254.14