Pregenerated sensors for GATD3A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053329Ensembl transcript IDs: ENSMUST00000001242.9, ENSMUST00000219120.2, ENSMUST00000220359.2
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAAGTGTCTATGCTCCTAGTAGCTAAGCGGCTCCTGTGTCCGGGCTaGAGCCATGGAGCACACGCCGGCTGGGGATGCCACAGTCACGGA | + |
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Preference number: 1 (lower is better) Translates to: EVSMLLVAKRLLCPG*SHGAHAGWGCHSHG Trigger: TCCGTGACTGTGGCATCCCCAGCCGGCGTGTGCTCCATGGCTTCAGCCCGGACACAGGAGCCGCTTAGCTACTAGGAGCATAGACACTTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001242.9 ENSMUST00000220359.2 |
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| 3UTR TCA 90 bp | CCCCATGGCACTGGCTGGCCCTGTTCTCCTGCCCAGGGGTTCCCTTaGAGTAACTCTTGTAGGGATGGCTGCCTGTCACCGTACCCTCGA | + |
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Preference number: 1 (lower is better) Translates to: PHGTGWPCSPAQGFP*SNSCRDGCLSPYPR Trigger: TCGAGGGTACGGTGACAGGCAGCCATCCCTACAAGAGTTACTTCAAGGGAACCCCTGGGCAGGAGAACAGGGCCAGCCAGTGCCATGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR CCA 90 bp | GGAGCACACGCCGGCTGGGGATGCCACAGTCACGGAGGCCAAGCGTaGTCCGGGTGGCATTACTTTCCCGTGAGTTCCAGCACATTCTTT | + |
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Preference number: 1 (lower is better) Translates to: GAHAGWGCHSHGGQA*SGWHYFPVSSSTFF Trigger: AAAGAATGTGCTGGAACTCACGGGAAAGTAATGCCACCCGGACCACGCTTGGCCTCCGTGACTGTGGCATCCCCAGCCGGCGTGTGCTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR TCA 90 bp | TTCTCTAGCCTGTGGGGCTCAGGTGTCCAGCTGTGTGCTCCAGGCTaGTTCAGGGCTGACAGGTCTCAGTGGGTGCAGGAACACGGATCC | + |
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Preference number: 1 (lower is better) Translates to: FSSLWGSGVQLCAPG*FRADRSQWVQEHGS Trigger: GGATCCGTGTTCCTGCACCCACTGAGACCTGTCAGCCCTGAATCAGCCTGGAGCACACAGCTGGACACCTGAGCCCCACAGGCTAGAGAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR CCA 90 bp | CTAGCTTCTGACTCACAGGTACTCATCAGGAGGAAGAAACTGGTCTaGGGGTGGAACAGTGCCCGATGGATGACAGCTTGCATGCTGGCC | + |
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Preference number: 1 (lower is better) Translates to: LASDSQVLIRRKKLV*GWNSARWMTACMLA Trigger: GGCCAGCATGCAAGCTGTCATCCATCGGGCACTGTTCCACCCCCAGACCAGTTTCTTCCTCCTGATGAGTACCTGTGAGTCAGAAGCTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR TCA 90 bp | TGTCACGCCAACAAGTCGGCACTGGCTTTAGGAGGAGCTAGCTTCTaGCTCACAGGTACTCATCAGGAGGAAGAAACTGGTCTGGGGGTG | + |
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Preference number: 1 (lower is better) Translates to: CHANKSALALGGASF*LTGTHQEEETGLGV Trigger: CACCCCCAGACCAGTTTCTTCCTCCTGATGAGTACCTGTGAGTCAGAAGCTAGCTCCTCCTAAAGCCAGTGCCGACTTGTTGGCGTGACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR CCA 90 bp | CTATCAGACCCAGGATCGGAGAACCTAAGTCCTTCAACCAGGCTCTaGGAAAGGTGCTTAGATCTTCCATGGGGACACGCAGTGAGGCAA | + |
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Preference number: 1 (lower is better) Translates to: LSDPGSENLSPSTRL*ERCLDLPWGHAVRQ Trigger: TTGCCTCACTGCGTGTCCCCATGGAAGATCTAAGCACCTTTCCCAGAGCCTGGTTGAAGGACTTAGGTTCTCCGATCCTGGGTCTGATAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001242.9 ENSMUST00000220359.2 |
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| 3UTR TCA 90 bp | GACTTAGAACCTAAACTGGTTTCTTCTTTTAAAGCTTTAGTACCCTaGCCTATCAGACCCAGGATCGGAGAACCTAAGTCCTTCAACCAG | + |
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Preference number: 1 (lower is better) Translates to: DLEPKLVSSFKALVP*PIRPRIGEPKSFNQ Trigger: CTGGTTGAAGGACTTAGGTTCTCCGATCCTGGGTCTGATAGGTCAGGGTACTAAAGCTTTAAAAGAAGAAACCAGTTTAGGTTCTAAGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001242.9 ENSMUST00000220359.2 |
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| 3UTR CCA 90 bp | ACTCTGGATCAGAGAGCTTTTCTTTATCCACAAACTAGGCACCTCTaGTTATCAGACGACTTAGAACCTAAACTGGTTTCTTCTTTTAAA | + |
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Preference number: 1 (lower is better) Translates to: TLDQRAFLYPQTRHL*LSDDLEPKLVSSFK Trigger: TTTAAAAGAAGAAACCAGTTTAGGTTCTAAGTCGTCTGATAACCAGAGGTGCCTAGTTTGTGGATAAAGAAAAGCTCTCTGATCCAGAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001242.9 ENSMUST00000220359.2 |
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| 3UTR CAA 90 bp | GCCCATGGGCATCGCACGGGAAGAGCCCCACCCGCCCGTCCACCCTaGGTCCTGCCAGTCCCCTGCTGCTCGATGATGTCACGCCAACAA | + |
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Preference number: 2 (lower is better) Translates to: AHGHRTGRAPPARPP*VLPVPCCSMMSRQQ Trigger: TTGTTGGCGTGACATCATCGAGCAGCAGGGGACTGGCAGGACCAAGGGTGGACGGGCGGGTGGGGCTCTTCCCGTGCGATGCCCATGGGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR-3UTR GCA 90 bp | GGGAAGAGCCCCACCCGCCCGTCCACCCTTGGTCCTGCCAGTCCCCTGCTGCTCTCTGCCCACCCACACTaGTCTAGCTCCGTTCTATGG | + |
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Preference number: 2 (lower is better) Translates to: GKSPTRPSTLGPASPLLLSAHPH*SSSVLW Trigger: CCATAGAACGGAGCTAGAGCAGTGTGGGTGGGCAGA...GAGCAGCAGGGGACTGGCAGGACCAAGGGTGGACGGGCGGGTGGGGCTCTTCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR-3UTR CCA 90 bp | CTAGCCTGTGGGGCTCAGGTGTCCAGCTGTGTGCTCCAGGCTGATTCAGGGCTGCCCCATGGCACTGGCTaGCCCTGTTCTCCTGCCCAG | + |
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Preference number: 2 (lower is better) Translates to: LACGAQVSSCVLQADSGLPHGTG*PCSPAQ Trigger: CTGGGCAGGAGAACAGGGCCAGCCAGTGCCATGGGG...CAGCCCTGAATCAGCCTGGAGCACACAGCTGGACACCTGAGCCCCACAGGCTAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR-3UTR TCA 90 bp | CTGGTCTGGGGGTGGAACAGTGCCCGATGGATGACAGCTTGCATGCTGGCCCCAGCCAGCCACCTTAGCTaGGGGGCCACTAGAACCAGG | + |
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Preference number: 2 (lower is better) Translates to: LVWGWNSARWMTACMLAPASHLS*GATRTR Trigger: CCTGGTTCTAGTGGCCCCTCAGCTAAGGTGGCTGGC...TGGGGCCAGCATGCAAGCTGTCATCCATCGGGCACTGTTCCACCCCCAGACCAG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR-3UTR GCA 90 bp | AGGGCCCAGGGAGGGTCCCTGAGCTTCCTGCTGGTAGAAGCTCAGGCTGGACATGTCCACCCTTGGTCCTaGCAGTCCCCTGCTGCTCGA | + |
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Preference number: 2 (lower is better) Translates to: RAQGGSLSFLLVEAQAGHVHPWS*QSPAAR Trigger: TCGAGCAGCAGGGGACTGGCAGGACCAAGGGTGGAC...ATGTCCAGCCTGAGCTTCTACCAGCAGGAAGCTCAGGGACCCTCCCTGGGCCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR-3UTR TCA 90 bp | CAGAGTCCTTCTCTAGCCTGTGGGGCTCAGGTGTCCAGCTGTGTGCTCCAGGCTGCCCAGGGGTTCCCTTaGAGTAACTCTTGTAGGGAT | + |
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Preference number: 2 (lower is better) Translates to: QSPSLACGAQVSSCVLQAAQGFP*SNSCRD Trigger: ATCCCTACAAGAGTTACTTCAAGGGAACCCCTGGGC...AGCCTGGAGCACACAGCTGGACACCTGAGCCCCACAGGCTAGAGAAGGACTCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR-3UTR TCA 90 bp | AAGCTCAGGCTGGACATACAGAGGCTAAGCTCCTCCTTCAGGCAGGAAGTGTCTTCCTCCTCAGCCAAGTaGGAAGCCTGCCTGTGGCAT | + |
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Preference number: 2 (lower is better) Translates to: KLRLDIQRLSSSFRQEVSSSSAK*EACLWH Trigger: ATGCCACAGGCAGGCTTCTCACTTGGCTGAGGAGGA...AGACACTTCCTGCCTGAAGGAGGAGCTTAGCCTCTGTATGTCCAGCCTGAGCTT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR-3UTR TCA 90 bp | AGAATCCCCGTGGCTTTAGTTAGCTGTCTTTACTCTGGATCAGAGAGCTTTTCTTCCCTCCCCACCCCATaGAGCTCCTGCTGCTGCTCA | + |
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Preference number: 2 (lower is better) Translates to: RIPVALVSCLYSGSESFSSLPTP*SSCCCS Trigger: TGAGCAGCAGCAGGAGCTTCATGGGGTGGGGAGGGA...AGAAAAGCTCTCTGATCCAGAGTAAAGACAGCTAACTAAAGCCACGGGGATTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000001242.9 ENSMUST00000220359.2 |
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| 3UTR-3UTR TCA 90 bp | GCTTTTCTTTATCCACAAACTAGGCACCTCTGGTTATCAGACGACTTAGAACCTAGGCTGATTCAGGGCTaGCAGGTCTCAGTGGGTGCA | + |
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Preference number: 2 (lower is better) Translates to: AFLYPQTRHLWLSDDLEPRLIQG*QVSVGA Trigger: TGCACCCACTGAGACCTGTCAGCCCTGAATCAGCCT...AGGTTCTAAGTCGTCTGATAACCAGAGGTGCCTAGTTTGTGGATAAAGAAAAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR-3UTR CCA 90 bp | GCTGTCTTTACTCTGGATCAGAGAGCTTTTCTTTATCCACAAACTAGGCACCTCTCTAGCTCCGTTCTATaGTCACCAGCAAGCAGCTCC | + |
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Preference number: 2 (lower is better) Translates to: AVFTLDQRAFLYPQTRHLSSSVL*SPASSS Trigger: GGAGCTGCTTGCTGGTGACCATAGAACGGAGCTAGA...GAGGTGCCTAGTTTGTGGATAAAGAAAAGCTCTCTGATCCAGAGTAAAGACAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR-3UTR GCA 90 bp | CACCTCTGGTTATCAGACGACTTAGAACCTAAACTGGTTTCTTCTTTTAAAGCTAGGTGTCCAGCTGTGTaGTCCAGGCTGATTCAGGGC | + |
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Preference number: 2 (lower is better) Translates to: HLWLSDDLEPKLVSSFKARCPAV*SRLIQG Trigger: GCCCTGAATCAGCCTGGAGCACACAGCTGGACACCT...AGCTTTAAAAGAAGAAACCAGTTTAGGTTCTAAGTCGTCTGATAACCAGAGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR TCA 72 bp | ATGCTCCTAGTAGCTAAGCGGCTCCTGTGTCCGGGCTaGAGCCATGGAGCACACGCCGGCTGGGGATGCCAC | + |
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Preference number: 3 (lower is better) Translates to: MLLVAKRLLCPG*SHGAHAGWGCH Trigger: GTGGCATCCCCAGCCGGCGTGTGCTCCATGGCTTCAGCCCGGACACAGGAGCCGCTTAGCTACTAGGAGCAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001242.9 ENSMUST00000220359.2 |
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| 3UTR TCA 72 bp | CCTCCTCAGCCAAGTGAGAAGCCTGCCTGTGGCATATaGGCTAGCCACGCCCCATGGCACTGGCTGGCCCTG | + |
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Preference number: 3 (lower is better) Translates to: PPQPSEKPACGI*ASHAPWHWLAL Trigger: CAGGGCCAGCCAGTGCCATGGGGCGTGGCTAGCTCATATGCCACAGGCAGGCTTCTCACTTGGCTGAGGAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR TCA 72 bp | CTGTGGGGCTCAGGTGTCCAGCTGTGTGCTCCAGGCTaGTTCAGGGCTGACAGGTCTCAGTGGGTGCAGGAA | + |
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Preference number: 3 (lower is better) Translates to: LWGSGVQLCAPG*FRADRSQWVQE Trigger: TTCCTGCACCCACTGAGACCTGTCAGCCCTGAATCAGCCTGGAGCACACAGCTGGACACCTGAGCCCCACAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR TCA 72 bp | AGGTGTCCAGCTGTGTGCTCCAGGCTGATTCAGGGCTaGCAGGTCTCAGTGGGTGCAGGAACACGGATCCTC | + |
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Preference number: 3 (lower is better) Translates to: RCPAVCSRLIQG*QVSVGAGTRIL Trigger: GAGGATCCGTGTTCCTGCACCCACTGAGACCTGTCAGCCCTGAATCAGCCTGGAGCACACAGCTGGACACCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR GCA 72 bp | GGGGCCACTAGAACCAGGAGATCTGCCCACCCACACTaGTCTAGCTCCGTTCTATGGTCACCAGCAAGCAGC | + |
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Preference number: 3 (lower is better) Translates to: GATRTRRSAHPH*SSSVLWSPASS Trigger: GCTGCTTGCTGGTGACCATAGAACGGAGCTAGAGCAGTGTGGGTGGGCAGATCTCCTGGTTCTAGTGGCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR GCA 72 bp | CTCCAGGCTGATTCAGGGCTGACAGGTCTCAGTGGGTaGAGGAACACGGATCCTCCTCAGCCAAGTGAGAAG | + |
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Preference number: 3 (lower is better) Translates to: LQADSGLTGLSG*RNTDPPQPSEK Trigger: CTTCTCACTTGGCTGAGGAGGATCCGTGTTCCTGCACCCACTGAGACCTGTCAGCCCTGAATCAGCCTGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR GCA 72 bp | CATCAGGAGGAAGAAACTGGTCTGGGGGTGGAACAGTaGCCGATGGATGACAGCTTGCATGCTGGCCCCACA | + |
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Preference number: 3 (lower is better) Translates to: HQEEETGLGVEQ*PMDDSLHAGPT Trigger: TGTGGGGCCAGCATGCAAGCTGTCATCCATCGGGCACTGTTCCACCCCCAGACCAGTTTCTTCCTCCTGATG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR CCA 72 bp | GGATGCCACAGTCACGGAGGCCAAGCGTGGTCCGGGTaGCATTACTTTCCCGTGAGTTCCAGCACATTCTTT | + |
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Preference number: 3 (lower is better) Translates to: GCHSHGGQAWSG*HYFPVSSSTFF Trigger: AAAGAATGTGCTGGAACTCACGGGAAAGTAATGCCACCCGGACCACGCTTGGCCTCCGTGACTGTGGCATCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR CCA 72 bp | CCAGGATCGGAGAACCTAAGTCCTTCAACCAGGCTCTaGGAAAGGTGCTTAGATCTTCCATGGGGACACGCA | + |
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Preference number: 3 (lower is better) Translates to: PGSENLSPSTRL*ERCLDLPWGHA Trigger: TGCGTGTCCCCATGGAAGATCTAAGCACCTTTCCCAGAGCCTGGTTGAAGGACTTAGGTTCTCCGATCCTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001242.9 ENSMUST00000220359.2 |
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| 3UTR TCA 72 bp | AACAAGTCGGCACTGGCTTTAGGAGGAGCTAGCTTCTaGCTCACAGGTACTCATCAGGAGGAAGAAACTGGT | + |
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Preference number: 3 (lower is better) Translates to: NKSALALGGASF*LTGTHQEEETG Trigger: ACCAGTTTCTTCCTCCTGATGAGTACCTGTGAGTCAGAAGCTAGCTCCTCCTAAAGCCAGTGCCGACTTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| 3UTR TCA 72 bp | CCTAAACTGGTTTCTTCTTTTAAAGCTTTAGTACCCTaGCCTATCAGACCCAGGATCGGAGAACCTAAGTCC | + |
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Preference number: 3 (lower is better) Translates to: PKLVSSFKALVP*PIRPRIGEPKS Trigger: GGACTTAGGTTCTCCGATCCTGGGTCTGATAGGTCAGGGTACTAAAGCTTTAAAAGAAGAAACCAGTTTAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001242.9 ENSMUST00000220359.2 |
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| CDS-3UTR GCA 90 bp | GATCTTCCATGGGGACACGCAGTGAGGCAAGCCCGCTCCCTCCCTCCCCACCCCGGAGCTGTGAAGGGCTaGGCGCTGGGAGGGAGCCCG | + |
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Preference number: 4 (lower is better) Translates to: DLPWGHAVRQARSLPPHPGAVKG*ALGGSP Trigger: CGGGCTCCCTCCCAGCGCGCAGCCCTTCACAGCTCC...GGGGTGGGGAGGGAGGGAGCGGGCTTGCCTCACTGCGTGTCCCCATGGAAGATC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000001242.9 |
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| CDS-3UTR CCA 90 bp | TCCGGGCTGAAGCCATGGAGCACACGCCGGCTGGGGATGCCACAGTCACGGAGGGCACATTCTTTACCATaGCCCCGATCCCGTCGTGGA | + |
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Preference number: 4 (lower is better) Translates to: SGLKPWSTRRLGMPQSRRAHSLP*PRSRRG Trigger: TCCACGACGGGATCGGGGCCATGGTAAAGAATGTGC...CCTCCGTGACTGTGGCATCCCCAGCCGGCGTGTGCTCCATGGCTTCAGCCCGGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001242.9 |
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| CDS-3UTR GCA 90 bp | CGGGCTGAAGCCATGGAGCACACGCCGGCTGGGGATGCCACAGTCACGGAGGCCTTTGATCACTTTGGCTaGGAGGACAGGAGCGATGCA | + |
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Preference number: 4 (lower is better) Translates to: RAEAMEHTPAGDATVTEAFDHFG*EDRSDA Trigger: TGCATCGCTCCTGTCCTCGCAGCCAAAGTGATCAAA...GGCCTCCGTGACTGTGGCATCCCCAGCCGGCGTGTGCTCCATGGCTTCAGCCCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001242.9 ENSMUST00000220359.2 |
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| CDS-3UTR TCA 90 bp | CAGGCTGGACATACAGAGGCTAAGCTCCTCCTTCAGGCAGGAAGTGTCTATGCTTGGCACCCAGGGCTTTaGTGGCTTCCGCAGTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: QAGHTEAKLLLQAGSVYAWHPGL*WLPQFQ Trigger: CTGGAACTGCGGAAGCCATCAAAGCCCTGGGTGCCA...AGCATAGACACTTCCTGCCTGAAGGAGGAGCTTAGCCTCTGTATGTCCAGCCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001242.9 ENSMUST00000220359.2 |
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| CDS-3UTR GCA 90 bp | CAGGCTGGACATACAGAGGCTAAGCTCCTCCTTCAGGCAGGAAGTGTCTATGCTTTTGATCACTTTGGCTaGGAGGACAGGAGCGATGCA | + |
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Preference number: 4 (lower is better) Translates to: QAGHTEAKLLLQAGSVYAFDHFG*EDRSDA Trigger: TGCATCGCTCCTGTCCTCGCAGCCAAAGTGATCAAA...AGCATAGACACTTCCTGCCTGAAGGAGGAGCTTAGCCTCTGTATGTCCAGCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001242.9 ENSMUST00000220359.2 |
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| CDS-3UTR TCA 90 bp | TGGATCAGAGAGCTTTTCTTTATCCACAAACTAGGCACCTCTGGTTATCAGACGTGGCACCCAGGGCTTTaGTGGCTTCCGCAGTTCCAG | + |
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Preference number: 4 (lower is better) Translates to: WIRELFFIHKLGTSGYQTWHPGL*WLPQFQ Trigger: CTGGAACTGCGGAAGCCATCAAAGCCCTGGGTGCCA...CGTCTGATAACCAGAGGTGCCTAGTTTGTGGATAAAGAAAAGCTCTCTGATCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001242.9 ENSMUST00000220359.2 |
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| CDS-3UTR CCA 90 bp | GCTGTCTTTACTCTGGATCAGAGAGCTTTTCTTTATCCACAAACTAGGCACCTCCTACCAGAAAGGATATaGTCACACCCTTCACACAGT | + |
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Preference number: 4 (lower is better) Translates to: AVFTLDQRAFLYPQTRHLLPERI*SHPSHS Trigger: ACTGTGTGAAGGGTGTGACCATATCCTTTCTGGTAG...GAGGTGCCTAGTTTGTGGATAAAGAAAAGCTCTCTGATCCAGAGTAAAGACAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000220359.2 |
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| CDS-3UTR CAA 90 bp | AGCGGCTCCTGTGTCCGGGCTGAAGCCATGGAGCACACGCCGGCTGGGGATGCCTGCCTCGGGCAATCCTaGCTGACTCTGCCAAAACGT | + |
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Preference number: 5 (lower is better) Translates to: SGSCVRAEAMEHTPAGDACLGQS*LTLPKR Trigger: ACGTTTTGGCAGAGTCAGCAAGGATTGCCCGAGGCA...GGCATCCCCAGCCGGCGTGTGCTCCATGGCTTCAGCCCGGACACAGGAGCCGCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001242.9 |
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| CDS-3UTR CAA 90 bp | TTAGATCTTCCATGGGGACACGCAGTGAGGCAAGCCCGCTCCCTCCCTCCCCACACACCTTTGATCACTTaGGCTGCGAGGACAGGAGCG | + |
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Preference number: 5 (lower is better) Translates to: LDLPWGHAVRQARSLPPHTPLIT*AARTGA Trigger: CGCTCCTGTCCTCGCAGCCAAAGTGATCAAAGGTGT...GTGGGGAGGGAGGGAGCGGGCTTGCCTCACTGCGTGTCCCCATGGAAGATCTAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000001242.9 ENSMUST00000220359.2 |
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| CDS TCA 90 bp | ATTGAGCTGAGCCAGGCTGGTAATCTTGCCTCGGGCAATCCTTGCTaGCTCTGCCAAAACGTTCCTGCTTTCCCTCTCAGAAGGCTCCCC | + |
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Preference number: 5 (lower is better) Translates to: IELSQAGNLASGNPC*LCQNVPAFPLRRLP Trigger: GGGGAGCCTTCTGAGAGGGAAAGCAGGAACGTTTTGGCAGAGTCAGCAAGGATTGCCCGAGGCAAGATTACCAGCCTGGCTCAGCTCAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001242.9 ENSMUST00000219120.2 |
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| CDS-3UTR CAA 90 bp | GCTCAGGCTGGACATACAGAGGCTAAGCTCCTCCTTCAGGCAGGAAGTGTCTATACACCTTTGATCACTTaGGCTGCGAGGACAGGAGCG | + |
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Preference number: 5 (lower is better) Translates to: AQAGHTEAKLLLQAGSVYTPLIT*AARTGA Trigger: CGCTCCTGTCCTCGCAGCCAAAGTGATCAAAGGTGT...ATAGACACTTCCTGCCTGAAGGAGGAGCTTAGCCTCTGTATGTCCAGCCTGAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000001242.9 ENSMUST00000220359.2 |
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| CDS GCA 72 bp | CTCGGGCAATCCTTGCTGACTCTGCCAAAACGTTCCTaGTTTCCCTCTCAGAAGGCTCCCCCTTGGTGTGGT | + |
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Preference number: 6 (lower is better) Translates to: LGQSLLTLPKRS*FPSQKAPPWCG Trigger: ACCACACCAAGGGGGAGCCTTCTGAGAGGGAAAGCAGGAACGTTTTGGCAGAGTCAGCAAGGATTGCCCGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000001242.9 ENSMUST00000219120.2 |
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| CDS TCA 72 bp | AGCCAGGCTGGTAATCTTGCCTCGGGCAATCCTTGCTaGCTCTGCCAAAACGTTCCTGCTTTCCCTCTCAGA | + |
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Preference number: 6 (lower is better) Translates to: SQAGNLASGNPC*LCQNVPAFPLR Trigger: TCTGAGAGGGAAAGCAGGAACGTTTTGGCAGAGTCAGCAAGGATTGCCCGAGGCAAGATTACCAGCCTGGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000001242.9 ENSMUST00000219120.2 |
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