Pregenerated sensors for GATC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029536Ensembl transcript IDs: ENSMUST00000139167.3
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GTGGAGCTGGAATTGCAGGAGGTCATGGGTCACCTTGAGTTGAGGTaGGCACCAGAGCCCGACTCAGCTCAGGATGAAGAACAGGAGGGT | + |
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Preference number: 1 (lower is better) Translates to: VELELQEVMGHLELR*APEPDSAQDEEQEG Trigger: ACCCTCCTGTTCTTCATCCTGAGCTGAGTCGGGCTCTGGTGCCCACCTCAACTCAAGGTGACCCATGACCTCCTGCAATTCCAGCTCCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR TCA 90 bp | GACCCAGACTCGGAGTTCTTACAATTCAGATCTGGCATTGTAAACTaGACTCTCCATAATAGGAGTTCACTGAGGTGGCTCAGGCCTCCA | + |
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Preference number: 1 (lower is better) Translates to: DPDSEFLQFRSGIVN*TLHNRSSLRWLRPP Trigger: TGGAGGCCTGAGCCACCTCAGTGAACTCCTATTATGGAGAGTTCAGTTTACAATGCCAGATCTGAATTGTAAGAACTCCGAGTCTGGGTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR GCA 90 bp | GTGTGTGTGTGTGTGTGTATGTGTGTATGTTGTTCATGGACTGAGTaGAAGGTGGAGGTTGGATGGCCTTCTGAGAAAGAAAGATGGTTC | + |
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Preference number: 1 (lower is better) Translates to: VCVCVCMCVCCSWTE*KVEVGWPSEKERWF Trigger: GAACCATCTTTCTTTCTCAGAAGGCCATCCAACCTCCACCTTGCACTCAGTCCATGAACAACATACACACATACACACACACACACACAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR CCA 90 bp | GTTCTCTTTTCAGAAAGGAACTATTTGGCTGGTGTTCATATTGCATaGTATGTGTGTGGGGGTTGGGTGTTCACGTATACTGTGTGTGTG | + |
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Preference number: 1 (lower is better) Translates to: VLFSERNYLAGVHIA*YVCGGWVFTYTVCV Trigger: CACACACACAGTATACGTGAACACCCAACCCCCACACACATACCATGCAATATGAACACCAGCCAAATAGTTCCTTTCTGAAAAGAGAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR GCA 90 bp | ACAAGTTCTCTTTTCAGAAAGGAACTATTTGGCTGGTGTTCATATTaGATGGTATGTGTGTGGGGGTTGGGTGTTCACGTATACTGTGTG | + |
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Preference number: 1 (lower is better) Translates to: TSSLFRKELFGWCSY*MVCVWGLGVHVYCV Trigger: CACACAGTATACGTGAACACCCAACCCCCACACACATACCATGCAATATGAACACCAGCCAAATAGTTCCTTTCTGAAAAGAGAACTTGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR GCA 90 bp | CAGGAGGTCATGGGTCACCTTGAGTTGAGGTGGGCACCAGAGCCCGACTCAGCTGGCCTCCAACCCCTGTaGTTGGGAGGCTGTAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: QEVMGHLELRWAPEPDSAGLQPL*LGGCSR Trigger: CCTGCTACAGCCTCCCAAGCACAGGGGTTGGAGGCC...AGCTGAGTCGGGCTCTGGTGCCCACCTCAACTCAAGGTGACCCATGACCTCCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR CAA 90 bp | CCTACAGAGGCCAGAAAGACAGCATCAACCCCTGTGGAGCTGGAATaGCAGGAGGTCATGGGTCACCTTGAGTTGAGGTGGGCACCAGAG | + |
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Preference number: 2 (lower is better) Translates to: PTEARKTASTPVELE*QEVMGHLELRWAPE Trigger: CTCTGGTGCCCACCTCAACTCAAGGTGACCCATGACCTCCTGCAATTCCAGCTCCACAGGGGTTGATGCTGTCTTTCTGGCCTCTGTAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR CCA 90 bp | CAGGAGGTCATGGGTCACCTTGAGTTGAGGTGGGCACCAGAGCCCGACTCAGCTTGCATGGTATGTGTGTaGGGGTTGGGTGTTCACGTA | + |
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Preference number: 2 (lower is better) Translates to: QEVMGHLELRWAPEPDSACMVCV*GLGVHV Trigger: TACGTGAACACCCAACCCCCACACACATACCATGCA...AGCTGAGTCGGGCTCTGGTGCCCACCTCAACTCAAGGTGACCCATGACCTCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR TCA 90 bp | GTATGTTGTTCATGGACTGAGTGCAAGGTGGAGGTTGGATGGCCTTCTGAGAAACCCAGAAACAGATGGTaGTGTGCTGGCTCTGAAGCC | + |
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Preference number: 2 (lower is better) Translates to: VCCSWTECKVEVGWPSEKPRNRW*CAGSEA Trigger: GGCTTCAGAGCCAGCACATCACCATCTGTTTCTGGG...TTTCTCAGAAGGCCATCCAACCTCCACCTTGCACTCAGTCCATGAACAACATAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR CCA 90 bp | GTGCCTACAGAGGCCAGAAAGACAGCATCAACCCCTGTGGAGCTGGAATTGCAGTTGCCTCCCAAGTGTTaGAATGAAATGAAAGACACG | + |
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Preference number: 2 (lower is better) Translates to: VPTEARKTASTPVELELQLPPKC*NEMKDT Trigger: CGTGTCTTTCATTTCATTCCAACACTTGGGAGGCAA...CTGCAATTCCAGCTCCACAGGGGTTGATGCTGTCTTTCTGGCCTCTGTAGGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR CCA 90 bp | GTGCCTACAGAGGCCAGAAAGACAGCATCAACCCCTGTGGAGCTGGAATTGCAGTTTGATCCATTTCCTTaGAAGCAGGCTTGTGGTTTT | + |
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Preference number: 2 (lower is better) Translates to: VPTEARKTASTPVELELQFDPFP*KQACGF Trigger: AAAACCACAAGCCTGCTTCCAAGGAAATGGATCAAA...CTGCAATTCCAGCTCCACAGGGGTTGATGCTGTCTTTCTGGCCTCTGTAGGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR TCA 90 bp | GGGATCTCTGACCCAGACTCGGAGTTCTTACAATTCAGATCTGGCATTGTAAACATGTTGTTCATGGACTaGGTGCAAGGTGGAGGTTGG | + |
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Preference number: 2 (lower is better) Translates to: GISDPDSEFLQFRSGIVNMLFMD*VQGGGW Trigger: CCAACCTCCACCTTGCACTCAGTCCATGAACAACAT...GTTTACAATGCCAGATCTGAATTGTAAGAACTCCGAGTCTGGGTCAGAGATCCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR GCA 90 bp | GGGATCTCTGACCCAGACTCGGAGTTCTTACAATTCAGATCTGGCATTGTAAACTGTTCATGGACTGAGTaGAAGGTGGAGGTTGGATGG | + |
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Preference number: 2 (lower is better) Translates to: GISDPDSEFLQFRSGIVNCSWTE*KVEVGW Trigger: CCATCCAACCTCCACCTTGCACTCAGTCCATGAACA...GTTTACAATGCCAGATCTGAATTGTAAGAACTCCGAGTCTGGGTCAGAGATCCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR CCA 90 bp | GTACAGAGAGGCCTATCTGAGCAACAAGAAAAGGGTGTGTGTGTGGGACACAGAAAGGTGGAGGTTGGATaGCCTTCTGAGAAAGAAAGA | + |
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Preference number: 2 (lower is better) Translates to: VQRGLSEQQEKGVCVGHRKVEVG*PSEKER Trigger: TCTTTCTTTCTCAGAAGGCCATCCAACCTCCACCTT...TCTGTGTCCCACACACACACCCTTTTCTTGTTGCTCAGATAGGCCTCTCTGTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR CCA 90 bp | CTGAGCAACAAGAAAAGGGTGTGTGTGTGGGACACAGACATTGCAGATAAAGGGGGTGTTCATATTGCATaGTATGTGTGTGGGGGTTGG | + |
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Preference number: 2 (lower is better) Translates to: LSNKKRVCVWDTDIADKGGVHIA*YVCGGW Trigger: CCAACCCCCACACACATACCATGCAATATGAACACC...CCCTTTATCTGCAATGTCTGTGTCCCACACACACACCCTTTTCTTGTTGCTCAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR TCA 90 bp | CTGAGCAACAAGAAAAGGGTGTGTGTGTGGGACACAGACATTGCAGATAAAGGGAAAGAAAGATGGTTCTaGATTAGGAGTTCCCGGCTG | + |
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Preference number: 2 (lower is better) Translates to: LSNKKRVCVWDTDIADKGKERWF*IRSSRL Trigger: CAGCCGGGAACTCCTAATTCAGAACCATCTTTCTTT...CCCTTTATCTGCAATGTCTGTGTCCCACACACACACCCTTTTCTTGTTGCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR CCA 90 bp | CTGAGCAACAAGAAAAGGGTGTGTGTGTGGGACACAGACATTGCAGATAAAGGGTGTGTATGTTGTTCATaGACTGAGTGCAAGGTGGAG | + |
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Preference number: 2 (lower is better) Translates to: LSNKKRVCVWDTDIADKGCVCCS*TECKVE Trigger: CTCCACCTTGCACTCAGTCCATGAACAACATACACA...CCCTTTATCTGCAATGTCTGTGTCCCACACACACACCCTTTTCTTGTTGCTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR TCA 90 bp | GTACAGAGAGGCCTATCTGAGCAACAAGAAAAGGGTGTGTGTGTGGGACACAGAATGAGTCTGAGTATTTaGTCCATTTCCTTGGAAGCA | + |
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Preference number: 2 (lower is better) Translates to: VQRGLSEQQEKGVCVGHRMSLSI*SISLEA Trigger: TGCTTCCAAGGAAATGGATCAAATACTCAGACTCAT...TCTGTGTCCCACACACACACCCTTTTCTTGTTGCTCAGATAGGCCTCTCTGTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR TCA 90 bp | CAGAGAGGCCTATCTGAGCAACAAGAAAAGGGTGTGTGTGTGGGACACAGACATGCAACTAAAAAGAACTaGTTTGTCTCTTCATCTCAG | + |
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Preference number: 2 (lower is better) Translates to: QRGLSEQQEKGVCVGHRHATKKN*FVSSSQ Trigger: CTGAGATGAAGAGACAAATCAGTTCTTTTTAGTTGC...ATGTCTGTGTCCCACACACACACCCTTTTCTTGTTGCTCAGATAGGCCTCTCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR CAA 90 bp | TGTGTATGTGTGTATGTTGTTCATGGACTGAGTGCAAGGTGGAGGTaGGATGGCCTTCTGAGAAAGAAAGATGGTTCTGAATTAGGAGTT | + |
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Preference number: 2 (lower is better) Translates to: CVCVYVVHGLSARWR*DGLLRKKDGSELGV Trigger: AACTCCTAATTCAGAACCATCTTTCTTTCTCAGAAGGCCATCCAACCTCCACCTTGCACTCAGTCCATGAACAACATACACACATACACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR TCA 90 bp | GTATGTTGTTCATGGACTGAGTGCAAGGTGGAGGTTGGATGGCCTTCTGAGAAAGGCTGTAGTTTACTTTaGTACTACTCAAACATATCC | + |
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Preference number: 2 (lower is better) Translates to: VCCSWTECKVEVGWPSEKGCSLL*YYSNIS Trigger: GGATATGTTTGAGTAGTATCAAAGTAAACTACAGCC...TTTCTCAGAAGGCCATCCAACCTCCACCTTGCACTCAGTCCATGAACAACATAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR TCA 90 bp | TCTTTTCCAGAGAGGGTTTCTCAGAATAATTCTGGCTCTGTAGACCAGGCTAGCTCTGGCATTGTAAACTaGACTCTCCATAATAGGAGT | + |
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Preference number: 2 (lower is better) Translates to: SFPERVSQNNSGSVDQASSGIVN*TLHNRS Trigger: ACTCCTATTATGGAGAGTTCAGTTTACAATGCCAGA...GCTAGCCTGGTCTACAGAGCCAGAATTATTCTGAGAAACCCTCTCTGGAAAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR CCA 90 bp | CTGAGCAACAAGAAAAGGGTGTGTGTGTGGGACACAGACATTGCAGATAAAGGGCAGAAAGGAACTATTTaGCTGGTGTTCATATTGCAT | + |
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Preference number: 2 (lower is better) Translates to: LSNKKRVCVWDTDIADKGQKGTI*LVFILH Trigger: ATGCAATATGAACACCAGCCAAATAGTTCCTTTCTG...CCCTTTATCTGCAATGTCTGTGTCCCACACACACACCCTTTTCTTGTTGCTCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR CAA 90 bp | AACAAGTTCTCTTTTCAGAAAGGAACTATTTGGCTGGTGTTCATATaGCATGGTATGTGTGTGGGGGTTGGGTGTTCACGTATACTGTGT | + |
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Preference number: 2 (lower is better) Translates to: NKFSFQKGTIWLVFI*HGMCVGVGCSRILC Trigger: ACACAGTATACGTGAACACCCAACCCCCACACACATACCATGCAATATGAACACCAGCCAAATAGTTCCTTTCTGAAAAGAGAACTTGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR TCA 90 bp | TTTCCATTTTCTTTTCCAGAGAGGGTTTCTCAGAATAATTCTGGCTCTGTAGACGGTTGGATGGCCTTCTaGGAAAGAAAGATGGTTCTG | + |
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Preference number: 2 (lower is better) Translates to: FPFSFPERVSQNNSGSVDGWMAF*ERKMVL Trigger: CAGAACCATCTTTCTTTCTCAGAAGGCCATCCAACC...GTCTACAGAGCCAGAATTATTCTGAGAAACCCTCTCTGGAAAAGAAAATGGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR CCA 72 bp | GAATTGCAGGAGGTCATGGGTCACCTTGAGTTGAGGTaGGCACCAGAGCCCGACTCAGCTCAGGATGAAGAA | + |
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Preference number: 3 (lower is better) Translates to: ELQEVMGHLELR*APEPDSAQDEE Trigger: TTCTTCATCCTGAGCTGAGTCGGGCTCTGGTGCCCACCTCAACTCAAGGTGACCCATGACCTCCTGCAATTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR CCA 72 bp | TGCCTACAGAGGCCAGAAAGACAGCATCAACCCCTGTaGAGCTGGAATTGCAGGAGGTCATGGGTCACCTTG | + |
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Preference number: 3 (lower is better) Translates to: CLQRPERQHQPL*SWNCRRSWVTL Trigger: CAAGGTGACCCATGACCTCCTGCAATTCCAGCTCCACAGGGGTTGATGCTGTCTTTCTGGCCTCTGTAGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR CAA 90 bp | GTGCCTACAGAGGCCAGAAAGACAGCATCAACCCCTGTGGAGCTGGAATTGCAGTGTGGGACACAGACATaGCAGATAAAGGGAAGAGAA | + |
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Preference number: 3 (lower is better) Translates to: VPTEARKTASTPVELELQCGTQT*QIKGRE Trigger: TTCTCTTCCCTTTATCTGCAATGTCTGTGTCCCACA...CTGCAATTCCAGCTCCACAGGGGTTGATGCTGTCTTTCTGGCCTCTGTAGGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR CAA 90 bp | TCAGGGATCTGTTGGCTTTTGCCTCCCAAGTGTTGGAATGAAATGAAAGACACGAGTGCAAGGTGGAGGTaGGATGGCCTTCTGAGAAAG | + |
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Preference number: 3 (lower is better) Translates to: SGICWLLPPKCWNEMKDTSARWR*DGLLRK Trigger: CTTTCTCAGAAGGCCATCCAACCTCCACCTTGCACT...CGTGTCTTTCATTTCATTCCAACACTTGGGAGGCAAAAGCCAACAGATCCCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR CCA 72 bp | GTGTGTGTGTGTGTGTGTATGTGTGTATGTTGTTCATaGACTGAGTGCAAGGTGGAGGTTGGATGGCCTTCT | + |
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Preference number: 3 (lower is better) Translates to: VCVCVCMCVCCS*TECKVEVGWPS Trigger: AGAAGGCCATCCAACCTCCACCTTGCACTCAGTCCATGAACAACATACACACATACACACACACACACACAC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR CCA 72 bp | AACTCAGGGATCTGTTGGCTTTTGCCTCCCAAGTGTTaGAATGAAATGAAAGACACGGAGCCACCATACCTG | + |
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Preference number: 3 (lower is better) Translates to: NSGICWLLPPKC*NEMKDTEPPYL Trigger: CAGGTATGGTGGCTCCGTGTCTTTCATTTCATTCCAACACTTGGGAGGCAAAAGCCAACAGATCCCTGAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR CAA 90 bp | GTGCCTACAGAGGCCAGAAAGACAGCATCAACCCCTGTGGAGCTGGAATTGCAGCTAAAAAGAACTGATTaGTCTCTTCATCTCAGGTCA | + |
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Preference number: 3 (lower is better) Translates to: VPTEARKTASTPVELELQLKRTD*SLHLRS Trigger: TGACCTGAGATGAAGAGACAAATCAGTTCTTTTTAG...CTGCAATTCCAGCTCCACAGGGGTTGATGCTGTCTTTCTGGCCTCTGTAGGCAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR CAA 90 bp | GGGATCTCTGACCCAGACTCGGAGTTCTTACAATTCAGATCTGGCATTGTAAACGTATGTGTGTGGGGGTaGGGTGTTCACGTATACTGT | + |
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Preference number: 3 (lower is better) Translates to: GISDPDSEFLQFRSGIVNVCVWG*GVHVYC Trigger: ACAGTATACGTGAACACCCAACCCCCACACACATAC...GTTTACAATGCCAGATCTGAATTGTAAGAACTCCGAGTCTGGGTCAGAGATCCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR CAA 90 bp | GTATGTTGTTCATGGACTGAGTGCAAGGTGGAGGTTGGATGGCCTTCTGAGAAAAGAGGAGGGAGGAAGTaGTTTTTCAGACAGAATGAG | + |
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Preference number: 3 (lower is better) Translates to: VCCSWTECKVEVGWPSEKRGGRK*FFRQNE Trigger: CTCATTCTGTCTGAAAAACAACTTCCTCCCTCCTCT...TTTCTCAGAAGGCCATCCAACCTCCACCTTGCACTCAGTCCATGAACAACATAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR GCA 72 bp | TGTGTGTGTATGTGTGTATGTTGTTCATGGACTGAGTaGAAGGTGGAGGTTGGATGGCCTTCTGAGAAAGAA | + |
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Preference number: 3 (lower is better) Translates to: CVCMCVCCSWTE*KVEVGWPSEKE Trigger: TTCTTTCTCAGAAGGCCATCCAACCTCCACCTTGCACTCAGTCCATGAACAACATACACACATACACACACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR CCA 72 bp | ATTTCCTTGGAAGCAGGCTTGTGGTTTTCTGCTAGCTaGGTGTTGTCCAGTTGTCTTCGGATCAATTACCAA | + |
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Preference number: 3 (lower is better) Translates to: ISLEAGLWFSAS*VLSSCLRINYQ Trigger: TTGGTAATTGATCCGAAGACAACTGGACAACACCCAGCTAGCAGAAAACCACAAGCCTGCTTCCAAGGAAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR CCA 72 bp | GTATGTGTGTATGTTGTTCATGGACTGAGTGCAAGGTaGAGGTTGGATGGCCTTCTGAGAAAGAAAGATGGT | + |
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Preference number: 3 (lower is better) Translates to: VCVYVVHGLSAR*RLDGLLRKKDG Trigger: ACCATCTTTCTTTCTCAGAAGGCCATCCAACCTCCACCTTGCACTCAGTCCATGAACAACATACACACATAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR-3UTR CAA 90 bp | TTTCCATTTTCTTTTCCAGAGAGGGTTTCTCAGAATAATTCTGGCTCTGTAGACTCCTTGGAAGCAGGCTaGTGGTTTTCTGCTAGCTGG | + |
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Preference number: 3 (lower is better) Translates to: FPFSFPERVSQNNSGSVDSLEAG*WFSASW Trigger: CCAGCTAGCAGAAAACCACAAGCCTGCTTCCAAGGA...GTCTACAGAGCCAGAATTATTCTGAGAAACCCTCTCTGGAAAAGAAAATGGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR GCA 72 bp | CTTTTCAGAAAGGAACTATTTGGCTGGTGTTCATATTaGATGGTATGTGTGTGGGGGTTGGGTGTTCACGTA | + |
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Preference number: 3 (lower is better) Translates to: LFRKELFGWCSY*MVCVWGLGVHV Trigger: TACGTGAACACCCAACCCCCACACACATACCATGCAATATGAACACCAGCCAAATAGTTCCTTTCTGAAAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR CCA 72 bp | TCAGAAAGGAACTATTTGGCTGGTGTTCATATTGCATaGTATGTGTGTGGGGGTTGGGTGTTCACGTATACT | + |
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Preference number: 3 (lower is better) Translates to: SERNYLAGVHIA*YVCGGWVFTYT Trigger: AGTATACGTGAACACCCAACCCCCACACACATACCATGCAATATGAACACCAGCCAAATAGTTCCTTTCTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR TCA 72 bp | GGCTCTGAAGCCAGTGGGAAAGCAACTAAAAAGAACTaGTTTGTCTCTTCATCTCAGGTCATCTGTCTCTTA | + |
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Preference number: 3 (lower is better) Translates to: GSEASGKATKKN*FVSSSQVICLL Trigger: TAAGAGACAGATGACCTGAGATGAAGAGACAAATCAGTTCTTTTTAGTTGCTTTCCCACTGGCTTCAGAGCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR TCA 72 bp | GGTTCTGAATTAGGAGTTCCCGGCTGTAGTTTACTTTaGTACTACTCAAACATATCCATAAAACGAGCCCTC | + |
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Preference number: 3 (lower is better) Translates to: GSELGVPGCSLL*YYSNISIKRAL Trigger: GAGGGCTCGTTTTATGGATATGTTTGAGTAGTATCAAAGTAAACTACAGCCGGGAACTCCTAATTCAGAACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR TCA 72 bp | GGAAGTTGTTTTTCAGACAGAATGAGTCTGAGTATTTaGTCCATTTCCTTGGAAGCAGGCTTGTGGTTTTCT | + |
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Preference number: 3 (lower is better) Translates to: GSCFSDRMSLSI*SISLEAGLWFS Trigger: AGAAAACCACAAGCCTGCTTCCAAGGAAATGGATCAAATACTCAGACTCATTCTGTCTGAAAAACAACTTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| CDS-3UTR CCA 90 bp | GTATGTTGTTCATGGACTGAGTGCAAGGTGGAGGTTGGATGGCCTTCTGAGAAAACGAGACGTGGAGCCTaGGTCCCCAGCCCCGCCGCC | + |
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Preference number: 4 (lower is better) Translates to: VCCSWTECKVEVGWPSEKTRRGA*VPSPAA Trigger: GGCGGCGGGGCTGGGGACCCAGGCTCCACGTCTCGT...TTTCTCAGAAGGCCATCCAACCTCCACCTTGCACTCAGTCCATGAACAACATAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| CDS-3UTR GCA 90 bp | CAGAGAGGCCTATCTGAGCAACAAGAAAAGGGTGTGTGTGTGGGACACAGACATCCACCGCCTCGCGGCTaGCGAAGTTCACCAGCGCCA | + |
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Preference number: 4 (lower is better) Translates to: QRGLSEQQEKGVCVGHRHPPPRG*RSSPAP Trigger: TGGCGCTGGTGAACTTCGGCAGCCGCGAGGCGGTGG...ATGTCTGTGTCCCACACACACACCCTTTTCTTGTTGCTCAGATAGGCCTCTCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| CDS-3UTR CCA 90 bp | CTGAGCAACAAGAAAAGGGTGTGTGTGTGGGACACAGACATTGCAGATAAAGGGCTGGGGGACGAGACGTaGAGCCTGGGTCCCCAGCCC | + |
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Preference number: 4 (lower is better) Translates to: LSNKKRVCVWDTDIADKGLGDET*SLGPQP Trigger: GGGCTGGGGACCCAGGCTCCACGTCTCGTCCCCCAG...CCCTTTATCTGCAATGTCTGTGTCCCACACACACACCCTTTTCTTGTTGCTCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR CAA 72 bp | GCCAGAAAGACAGCATCAACCCCTGTGGAGCTGGAATaGCAGGAGGTCATGGGTCACCTTGAGTTGAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: ARKTASTPVELE*QEVMGHLELRW Trigger: CCACCTCAACTCAAGGTGACCCATGACCTCCTGCAATTCCAGCTCCACAGGGGTTGATGCTGTCTTTCTGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| CDS-3UTR CCA 90 bp | CAGGAGGTCATGGGTCACCTTGAGTTGAGGTGGGCACCAGAGCCCGACTCAGCTCTTGTTTACCATGTCTaGCAAGGAAATATTACCTGG | + |
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Preference number: 4 (lower is better) Translates to: QEVMGHLELRWAPEPDSALVYHV*QGNITW Trigger: CCAGGTAATATTTCCTTGCCAGACATGGTAAACAAG...AGCTGAGTCGGGCTCTGGTGCCCACCTCAACTCAAGGTGACCCATGACCTCCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| CDS-3UTR CCA 90 bp | GTATGTTGTTCATGGACTGAGTGCAAGGTGGAGGTTGGATGGCCTTCTGAGAAAGATCCGCAAAGGCGATaGCTTTCTCTAGCCGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: VCCSWTECKVEVGWPSEKDPQRR*LSLAGP Trigger: TGGACCGGCTAGAGAAAGCCATCGCCTTTGCGGATC...TTTCTCAGAAGGCCATCCAACCTCCACCTTGCACTCAGTCCATGAACAACATAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| CDS-3UTR CCA 90 bp | TCTTTTCCAGAGAGGGTTTCTCAGAATAATTCTGGCTCTGTAGACCAGGCTAGCCCTGTGGATTCGCTTTaGAAGCAAAGCTTCGGCCCG | + |
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Preference number: 4 (lower is better) Translates to: SFPERVSQNNSGSVDQASPVDSL*KQSFGP Trigger: CGGGCCGAAGCTTTGCTTCCAAAGCGAATCCACAGG...GCTAGCCTGGTCTACAGAGCCAGAATTATTCTGAGAAACCCTCTCTGGAAAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR CAA 72 bp | GGCTGGTGTTCATATTGCATGGTATGTGTGTGGGGGTaGGGTGTTCACGTATACTGTGTGTGTGTGTGTGTG | + |
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Preference number: 4 (lower is better) Translates to: GWCSYCMVCVWG*GVHVYCVCVCV Trigger: CACACACACACACACACAGTATACGTGAACACCCAACCCCCACACACATACCATGCAATATGAACACCAGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| CDS-3UTR GCA 90 bp | CTCAAGGCCAGCCTGATGTACAGAGAGGCCTATCTGAGCAACAAGAAAAGGGTGAGCACAGCTGCCTTCTaGAACATTGTCAGATCTCAA | + |
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Preference number: 4 (lower is better) Translates to: LKASLMYREAYLSNKKRVSTAAF*NIVRSQ Trigger: TTGAGATCTGACAATGTTGCAGAAGGCAGCTGTGCT...CACCCTTTTCTTGTTGCTCAGATAGGCCTCTCTGTACATCAGGCTGGCCTTGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR CAA 72 bp | ACCAGGCTAGCCTTGAACTCAGGGATCTGTTGGCTTTaGCCTCCCAAGTGTTGGAATGAAATGAAAGACACG | + |
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Preference number: 4 (lower is better) Translates to: TRLALNSGICWL*PPKCWNEMKDT Trigger: CGTGTCTTTCATTTCATTCCAACACTTGGGAGGCAAAAGCCAACAGATCCCTGAGTTCAAGGCTAGCCTGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| CDS-3UTR CCA 90 bp | TCTTTTCCAGAGAGGGTTTCTCAGAATAATTCTGGCTCTGTAGACCAGGCTAGCCTGGACCTTTCCCTGTaGATTCGCTTTGGAAGCAAA | + |
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Preference number: 4 (lower is better) Translates to: SFPERVSQNNSGSVDQASLDLSL*IRFGSK Trigger: TTTGCTTCCAAAGCGAATCCACAGGGAAAGGTCCAG...GCTAGCCTGGTCTACAGAGCCAGAATTATTCTGAGAAACCCTCTCTGGAAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR CAA 72 bp | TTGGAAGCAGGCTTGTGGTTTTCTGCTAGCTGGGTGTaGTCCAGTTGTCTTCGGATCAATTACCAAGAAACT | + |
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Preference number: 4 (lower is better) Translates to: LEAGLWFSASWV*SSCLRINYQET Trigger: AGTTTCTTGGTAATTGATCCGAAGACAACTGGACAACACCCAGCTAGCAGAAAACCACAAGCCTGCTTCCAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR CAA 72 bp | TCTTTTCAGAAAGGAACTATTTGGCTGGTGTTCATATaGCATGGTATGTGTGTGGGGGTTGGGTGTTCACGT | + |
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Preference number: 4 (lower is better) Translates to: SFQKGTIWLVFI*HGMCVGVGCSR Trigger: ACGTGAACACCCAACCCCCACACACATACCATGCAATATGAACACCAGCCAAATAGTTCCTTTCTGAAAAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| 3UTR CAA 72 bp | CTGAAGCCAGTGGGAAAGCAACTAAAAAGAACTGATTaGTCTCTTCATCTCAGGTCATCTGTCTCTTACACC | + |
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Preference number: 4 (lower is better) Translates to: LKPVGKQLKRTD*SLHLRSSVSYT Trigger: GGTGTAAGAGACAGATGACCTGAGATGAAGAGACAAATCAGTTCTTTTTAGTTGCTTTCCCACTGGCTTCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| CDS GCA 90 bp | ACCGCCTCGCGGCTGCCGAAGTTCACCAGCGCCAGTCGCTCCAGATaGTCGATTACCGCGGGGGACACGCGACCGCTGCCCTGGGGGACG | + |
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Preference number: 5 (lower is better) Translates to: TASRLPKFTSASRSR*SITAGDTRPLPWGT Trigger: CGTCCCCCAGGGCAGCGGTCGCGTGTCCCCCGCGGTAATCGAGCATCTGGAGCGACTGGCGCTGGTGAACTTCGGCAGCCGCGAGGCGGT 71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| CDS TCA 90 bp | ACCGACTCTAGGGGCTCCACACCGTCAGTGTCCACGGCGTGCAGCTaGTCCGCAAAGGCGATGGCTTTCTCTAGCCGGTCCACCGCCTCG | + |
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Preference number: 5 (lower is better) Translates to: TDSRGSTPSVSTACS*SAKAMAFSSRSTAS Trigger: CGAGGCGGTGGACCGGCTAGAGAAAGCCATCGCCTTTGCGGATCAGCTGCACGCCGTGGACACTGACGGTGTGGAGCCCCTAGAGTCGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| CDS GCA 90 bp | CCGCAAAGGCGATGGCTTTCTCTAGCCGGTCCACCGCCTCGCGGCTaGCGAAGTTCACCAGCGCCAGTCGCTCCAGATGCTCGATTACCG | + |
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Preference number: 5 (lower is better) Translates to: PQRRWLSLAGPPPRG*RSSPAPVAPDARLP Trigger: CGGTAATCGAGCATCTGGAGCGACTGGCGCTGGTGAACTTCGGCAGCCGCGAGGCGGTGGACCGGCTAGAGAAAGCCATCGCCTTTGCGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| CDS CCA 90 bp | CCACACCGTCAGTGTCCACGGCGTGCAGCTGATCCGCAAAGGCGATaGCTTTCTCTAGCCGGTCCACCGCCTCGCGGCTGCCGAAGTTCA | + |
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Preference number: 5 (lower is better) Translates to: PHRQCPRRAADPQRR*LSLAGPPPRGCRSS Trigger: TGAACTTCGGCAGCCGCGAGGCGGTGGACCGGCTAGAGAAAGCCATCGCCTTTGCGGATCAGCTGCACGCCGTGGACACTGACGGTGTGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| CDS GCA 72 bp | CGGCTGCCGAAGTTCACCAGCGCCAGTCGCTCCAGATaGTCGATTACCGCGGGGGACACGCGACCGCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: RLPKFTSASRSR*SITAGDTRPLP Trigger: GGGCAGCGGTCGCGTGTCCCCCGCGGTAATCGAGCATCTGGAGCGACTGGCGCTGGTGAACTTCGGCAGCCG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| CDS CCA 72 bp | CTGGGTCCCCAGCCCCGCCGCCTGGACCTTTCCCTGTaGATTCGCTTTGGAAGCAAAGCTTCGGCCCGCGTC | + |
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Preference number: 6 (lower is better) Translates to: LGPQPRRLDLSL*IRFGSKASARV Trigger: GACGCGGGCCGAAGCTTTGCTTCCAAAGCGAATCCACAGGGAAAGGTCCAGGCGGCGGGGCTGGGGACCCAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| CDS CCA 72 bp | CAGTGTCCACGGCGTGCAGCTGATCCGCAAAGGCGATaGCTTTCTCTAGCCGGTCCACCGCCTCGCGGCTGC | + |
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Preference number: 6 (lower is better) Translates to: QCPRRAADPQRR*LSLAGPPPRGC Trigger: GCAGCCGCGAGGCGGTGGACCGGCTAGAGAAAGCCATCGCCTTTGCGGATCAGCTGCACGCCGTGGACACTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| CDS GCA 72 bp | CGATGGCTTTCTCTAGCCGGTCCACCGCCTCGCGGCTaGCGAAGTTCACCAGCGCCAGTCGCTCCAGATGCT | + |
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Preference number: 6 (lower is better) Translates to: RWLSLAGPPPRG*RSSPAPVAPDA Trigger: AGCATCTGGAGCGACTGGCGCTGGTGAACTTCGGCAGCCGCGAGGCGGTGGACCGGCTAGAGAAAGCCATCG 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| CDS TCA 72 bp | AGGGGCTCCACACCGTCAGTGTCCACGGCGTGCAGCTaGTCCGCAAAGGCGATGGCTTTCTCTAGCCGGTCC | + |
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Preference number: 6 (lower is better) Translates to: RGSTPSVSTACS*SAKAMAFSSRS Trigger: GGACCGGCTAGAGAAAGCCATCGCCTTTGCGGATCAGCTGCACGCCGTGGACACTGACGGTGTGGAGCCCCT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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| CDS CCA 72 bp | ACGAGACGTGGAGCCTGGGTCCCCAGCCCCGCCGCCTaGACCTTTCCCTGTGGATTCGCTTTGGAAGCAAAG | + |
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Preference number: 6 (lower is better) Translates to: TRRGAWVPSPAA*TFPCGFALEAK Trigger: CTTTGCTTCCAAAGCGAATCCACAGGGAAAGGTCCAGGCGGCGGGGCTGGGGACCCAGGCTCCACGTCTCGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000139167.3 |
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