RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GATB (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028085

Ensembl transcript IDs: ENSMUST00000107672.8, ENSMUST00000107674.2, ENSMUST00000127348.8

Found 253 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGGCAGCTGTCAGAGCTAGCTGGGAGGAAGGAGCCTCGCAAGGACTaGGTGCTGATGGCGTCTCCTCTGGGAATACTCAGTCCATGTGTG +
Preference number: 1 (lower is better)
Translates to: RQLSELAGRKEPRKD*VLMASPLGILSPCV
Trigger: CACACATGGACTGAGTATTCCCAGAGGAGACGCCATCAGCACGCAGTCCTTGCGAGGCTCCTTCCTCCCAGCTAGCTCTGACAGCTGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR TCA 90 bp AGTGTAGCTTGGCTAGGGACTAAGAGATACAACTTGTACAGCACATaGGTTCCAGCCCTCACAGGCCCCTCTTCTCAGAGCCACACTGTC +
Preference number: 1 (lower is better)
Translates to: SVAWLGTKRYNLYST*VPALTGPSSQSHTV
Trigger: GACAGTGTGGCTCTGAGAAGAGGGGCCTGTGAGGGCTGGAACTCATGTGCTGTACAAGTTGTATCTCTTAGTCCCTAGCCAAGCTACACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR GCA 90 bp CATCTTCTGGTGACGGGTGTGTCCACTTTCTTCTCATTCTTCAGTTaGCCTGGAATGATGGTGCCCAGCAATGTTCTTACCAGGCCTGAG +
Preference number: 1 (lower is better)
Translates to: HLLVTGVSTFFSFFS*PGMMVPSNVLTRPE
Trigger: CTCAGGCCTGGTAAGAACATTGCTGGGCACCATCATTCCAGGGCAACTGAAGAATGAGAAGAAAGTGGACACACCCGTCACCAGAAGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR GCA 90 bp TCTCTCTCTCTCTTTCCTCTCTCTCCCTCCCTCCCTCCCTCTCTCTaGCTAAGCATTGTGTGTGGGAAGGATGTAAACTATACAATCTCT +
Preference number: 1 (lower is better)
Translates to: SLSLFPLSPSLPPSL*LSIVCGKDVNYTIS
Trigger: AGAGATTGTATAGTTTACATCCTTCCCACACACAATGCTTAGGCAGAGAGAGGGAGGGAGGGAGGGAGAGAGAGGAAAGAGAGAGAGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR CCA 90 bp TATTCATTAAATTTATCTGAGAACTTGTGTGTCACCTTAATTCACTaGGAGCCGAGCAGGCGACAGTGCCTCCACTCAGCAGGTGAGTGC +
Preference number: 1 (lower is better)
Translates to: YSLNLSENLCVTLIH*EPSRRQCLHSAGEC
Trigger: GCACTCACCTGCTGAGTGGAGGCACTGTCGCCTGCTCGGCTCCCAGTGAATTAAGGTGACACACAAGTTCTCAGATAAATTTAATGAATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR-3UTR GCA 90 bp GAGCCTCGCAAGGACTGCGTGCTGATGGCGTCTCCTCTGGGAATACTCAGTCCACACTCAGCAGGTGAGTaGCAGCACCCTCCTGCCCTC +
Preference number: 2 (lower is better)
Translates to: EPRKDCVLMASPLGILSPHSAGE*QHPPAL
Trigger: GAGGGCAGGAGGGTGCTGGCACTCACCTGCTGAGTG...TGGACTGAGTATTCCCAGAGGAGACGCCATCAGCACGCAGTCCTTGCGAGGCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR CAA 90 bp CATAGAACTGATGTCCACACAGCCTCAGCTTTTGGCTGGGTGAAGTaGCTTAGCAACGCTGGGTGCCATCTTCTGGTGACGGGTGTGTCC +
Preference number: 2 (lower is better)
Translates to: HRTDVHTASAFGWVK*LSNAGCHLLVTGVS
Trigger: GGACACACCCGTCACCAGAAGATGGCACCCAGCGTTGCTAAGCAACTTCACCCAGCCAAAAGCTGAGGCTGTGTGGACATCAGTTCTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR-3UTR TCA 90 bp GAGCCTCGCAAGGACTGCGTGCTGATGGCGTCTCCTCTGGGAATACTCAGTCCATCTGAGGTGGGGACGTaGACTTTATTCTGTGTAGAC +
Preference number: 2 (lower is better)
Translates to: EPRKDCVLMASPLGILSPSEVGT*TLFCVD
Trigger: GTCTACACAGAATAAAGTTCACGTCCCCACCTCAGA...TGGACTGAGTATTCCCAGAGGAGACGCCATCAGCACGCAGTCCTTGCGAGGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR-3UTR CCA 90 bp GAGCCTCGCAAGGACTGCGTGCTGATGGCGTCTCCTCTGGGAATACTCAGTCCAAGTAGGTTTTGGAAATaGCTTCCACTGAGCTGCCCA +
Preference number: 2 (lower is better)
Translates to: EPRKDCVLMASPLGILSPSRFWK*LPLSCP
Trigger: TGGGCAGCTCAGTGGAAGCCATTTCCAAAACCTACT...TGGACTGAGTATTCCCAGAGGAGACGCCATCAGCACGCAGTCCTTGCGAGGCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR-3UTR TCA 90 bp GCTGATGGCGTCTCCTCTGGGAATACTCAGTCCATGTGTGTTTTCCAACTGATAAACTTGTACAGCACATaGGTTCCAGCCCTCACAGGC +
Preference number: 2 (lower is better)
Translates to: ADGVSSGNTQSMCVFQLINLYST*VPALTG
Trigger: GCCTGTGAGGGCTGGAACTCATGTGCTGTACAAGTT...TATCAGTTGGAAAACACACATGGACTGAGTATTCCCAGAGGAGACGCCATCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR-3UTR CCA 90 bp GTAGTTCAGGCTGATTTGGACTCTCTCTACCTTGGTCTGAGTACTGGCATTACAAAACTCCTGAGGCCCTaGTCCTTAAGGTCCCCAGCA +
Preference number: 2 (lower is better)
Translates to: VVQADLDSLYLGLSTGITKLLRP*SLRSPA
Trigger: TGCTGGGGACCTTAAGGACCAGGGCCTCAGGAGTTT...TGTAATGCCAGTACTCAGACCAAGGTAGAGAGAGTCCAAATCAGCCTGAACTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
3UTR-3UTR CCA 90 bp AATCAAACACTTGAACAGCCTGTTTCATCAGGGCAACACATGGTCTGTGGCTTCCTGCTGCCACCATCATaGGGCCATTTCCAGACAGTG +
Preference number: 2 (lower is better)
Translates to: NQTLEQPVSSGQHMVCGFLLPPS*GHFQTV
Trigger: CACTGTCTGGAAATGGCCCCATGATGGTGGCAGCAG...GAAGCCACAGACCATGTGTTGCCCTGATGAAACAGGCTGTTCAAGTGTTTGATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR-3UTR CCA 90 bp AATCAAACACTTGAACAGCCTGTTTCATCAGGGCAACACATGGTCTGTGGCTTCATTCTTCAGTTGCCCTaGAATGATGGTGCCCAGCAA +
Preference number: 2 (lower is better)
Translates to: NQTLEQPVSSGQHMVCGFILQLP*NDGAQQ
Trigger: TTGCTGGGCACCATCATTCCAGGGCAACTGAAGAAT...GAAGCCACAGACCATGTGTTGCCCTGATGAAACAGGCTGTTCAAGTGTTTGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR-3UTR TCA 90 bp GCTGATGGCGTCTCCTCTGGGAATACTCAGTCCATGTGTGTTTTCCAACTGATAAACCTTACTGTTCTTTaGGATAAAGGTCTGGTCAGA +
Preference number: 2 (lower is better)
Translates to: ADGVSSGNTQSMCVFQLINLTVL*DKGLVR
Trigger: TCTGACCAGACCTTTATCTCAAAGAACAGTAAGGTT...TATCAGTTGGAAAACACACATGGACTGAGTATTCCCAGAGGAGACGCCATCAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR-3UTR GCA 90 bp AGAGAGCTAAAGGTGAGCATTCTGATGTATAACAGCATGATCTTATTCTTTCCACTCCCTCCCTCTCTCTaGCTAAGCATTGTGTGTGGG +
Preference number: 2 (lower is better)
Translates to: RELKVSILMYNSMILFFPLPPSL*LSIVCG
Trigger: CCCACACACAATGCTTAGGCAGAGAGAGGGAGGGAG...TGGAAAGAATAAGATCATGCTGTTATACATCAGAATGCTCACCTTTAGCTCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR GCA 72 bp GTCACCTTAATTCACTGGGAGCCGAGCAGGCGACAGTaGCTCCACTCAGCAGGTGAGTGCCAGCACCCTCCT +
Preference number: 3 (lower is better)
Translates to: VTLIHWEPSRRQ*LHSAGECQHPP
Trigger: AGGAGGGTGCTGGCACTCACCTGCTGAGTGGAGGCACTGTCGCCTGCTCGGCTCCCAGTGAATTAAGGTGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR CCA 72 bp CTTGGTCTGTCGGCCTTTAGGATGGGGAGCACTGCTTaGCTCTACAAAGCACCCACGGCATCTGAGGTGGGG +
Preference number: 3 (lower is better)
Translates to: LGLSAFRMGSTA*LYKAPTASEVG
Trigger: CCCCACCTCAGATGCCGTGGGTGCTTTGTAGAGCCAAGCAGTGCTCCCCATCCTAAAGGCCGACAGACCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR GCA 72 bp TCAGAGCTAGCTGGGAGGAAGGAGCCTCGCAAGGACTaGGTGCTGATGGCGTCTCCTCTGGGAATACTCAGT +
Preference number: 3 (lower is better)
Translates to: SELAGRKEPRKD*VLMASPLGILS
Trigger: ACTGAGTATTCCCAGAGGAGACGCCATCAGCACGCAGTCCTTGCGAGGCTCCTTCCTCCCAGCTAGCTCTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR TCA 72 bp GAACTGATGTCCACACAGCCTCAGCTTTTGGCTGGGTaGAGTTGCTTAGCAACGCTGGGTGCCATCTTCTGG +
Preference number: 3 (lower is better)
Translates to: ELMSTQPQLLAG*SCLATLGAIFW
Trigger: CCAGAAGATGGCACCCAGCGTTGCTAAGCAACTTCACCCAGCCAAAAGCTGAGGCTGTGTGGACATCAGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR CCA 72 bp GATAAAGGTCTGGTCAGATTAGGATCTGAGCACCTCTaGCCACTGGAGTTCAGGCTTGTAGAGCAGCAGGTC +
Preference number: 3 (lower is better)
Translates to: DKGLVRLGSEHL*PLEFRLVEQQV
Trigger: GACCTGCTGCTCTACAAGCCTGAACTCCAGTGGCCAGAGGTGCTCAGATCCTAATCTGACCAGACCTTTATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR-3UTR CAA 90 bp GCTGATGGCGTCTCCTCTGGGAATACTCAGTCCATGTGTGTTTTCCAACTGATACCCTCCTGCCCTCCCTaGCCTGAACACCAAGTTAAG +
Preference number: 3 (lower is better)
Translates to: ADGVSSGNTQSMCVFQLIPSCPP*PEHQVK
Trigger: CTTAACTTGGTGTTCAGGCAAGGGAGGGCAGGAGGG...TATCAGTTGGAAAACACACATGGACTGAGTATTCCCAGAGGAGACGCCATCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR GCA 72 bp CTCTTTCCTCTCTCTCCCTCCCTCCCTCCCTCTCTCTaGCTAAGCATTGTGTGTGGGAAGGATGTAAACTAT +
Preference number: 3 (lower is better)
Translates to: LFPLSPSLPPSL*LSIVCGKDVNY
Trigger: ATAGTTTACATCCTTCCCACACACAATGCTTAGGCAGAGAGAGGGAGGGAGGGAGGGAGAGAGAGGAAAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR CCA 72 bp GGGTGTGTCCACTTTCTTCTCATTCTTCAGTTGCCCTaGAATGATGGTGCCCAGCAATGTTCTTACCAGGCC +
Preference number: 3 (lower is better)
Translates to: GCVHFLLILQLP*NDGAQQCSYQA
Trigger: GGCCTGGTAAGAACATTGCTGGGCACCATCATTCCAGGGCAACTGAAGAATGAGAAGAAAGTGGACACACCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR CCA 72 bp CATAGAACTGATGTCCACACAGCCTCAGCTTTTGGCTaGGTGAAGTTGCTTAGCAACGCTGGGTGCCATCTT +
Preference number: 3 (lower is better)
Translates to: HRTDVHTASAFG*VKLLSNAGCHL
Trigger: AAGATGGCACCCAGCGTTGCTAAGCAACTTCACCCAGCCAAAAGCTGAGGCTGTGTGGACATCAGTTCTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR GCA 72 bp GTGACGGGTGTGTCCACTTTCTTCTCATTCTTCAGTTaGCCTGGAATGATGGTGCCCAGCAATGTTCTTACC +
Preference number: 3 (lower is better)
Translates to: VTGVSTFFSFFS*PGMMVPSNVLT
Trigger: GGTAAGAACATTGCTGGGCACCATCATTCCAGGGCAACTGAAGAATGAGAAGAAAGTGGACACACCCGTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR-3UTR CAA 90 bp GCTTGTCTGAAACAGACCATAGAACTGATGTCCACACAGCCTCAGCTTTTGGCTCTTCTCATTCTTCAGTaGCCCTGGAATGATGGTGCC +
Preference number: 3 (lower is better)
Translates to: ACLKQTIELMSTQPQLLALLILQ*PWNDGA
Trigger: GGCACCATCATTCCAGGGCAACTGAAGAATGAGAAG...AGCCAAAAGCTGAGGCTGTGTGGACATCAGTTCTATGGTCTGTTTCAGACAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR TCA 72 bp TGTCCACTTTCTTCTCATTCTTCAGTTGCCCTGGAATaGTGGTGCCCAGCAATGTTCTTACCAGGCCTGAGA +
Preference number: 3 (lower is better)
Translates to: CPLSSHSSVALE*WCPAMFLPGLR
Trigger: TCTCAGGCCTGGTAAGAACATTGCTGGGCACCATCATTCCAGGGCAACTGAAGAATGAGAAGAAAGTGGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR-3UTR CAA 90 bp GCTGATGGCGTCTCCTCTGGGAATACTCAGTCCATGTGTGTTTTCCAACTGATATGCTTTCTGCAAGGCTaGATGACCAAGCCAGATGAA +
Preference number: 3 (lower is better)
Translates to: ADGVSSGNTQSMCVFQLICFLQG*MTKPDE
Trigger: TTCATCTGGCTTGGTCATCAAGCCTTGCAGAAAGCA...TATCAGTTGGAAAACACACATGGACTGAGTATTCCCAGAGGAGACGCCATCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR CCA 72 bp AAACTATTGCCTCCTGGCCTCCTAGGAAGTGTAGCTTaGCTAGGGACTAAGAGATACAACTTGTACAGCACA +
Preference number: 3 (lower is better)
Translates to: KLLPPGLLGSVA*LGTKRYNLYST
Trigger: TGTGCTGTACAAGTTGTATCTCTTAGTCCCTAGCCAAGCTACACTTCCTAGGAGGCCAGGAGGCAATAGTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR TCA 90 bp GAGCCTCGCAAGGACTGCGTGCTGATGGCGTCTCCTCTGGGAATACTCAGTCCAGATGTGGGCCCAGTCTaGGAGCCACTTCGGTGGCGG +
Preference number: 4 (lower is better)
Translates to: EPRKDCVLMASPLGILSPDVGPV*EPLRWR
Trigger: CCGCCACCGAAGTGGCTCTCAGACTGGGCCCACATC...TGGACTGAGTATTCCCAGAGGAGACGCCATCAGCACGCAGTCCTTGCGAGGCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR GCA 90 bp CAGCCCTCACAGGCCCCTCTTCTCAGAGCCACACTGTCCTCCATCCGGCAGAGGTGCCCTGCTGTGGCTTaGCTTCCGCACCAACCCAAT +
Preference number: 4 (lower is better)
Translates to: QPSQAPLLRATLSSIRQRCPAVA*LPHQPN
Trigger: ATTGGGTTGGTGCGGAAGGCAAGCCACAGCAGGGCA...CCTCTGCCGGATGGAGGACAGTGTGGCTCTGAGAAGAGGGGCCTGTGAGGGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR GCA 90 bp CAGCCCTCACAGGCCCCTCTTCTCAGAGCCACACTGTCCTCCATCCGGCAGAGGTATCAGAGCCGGGTCTaGCCTGCTGTGGCTTGCCTT +
Preference number: 4 (lower is better)
Translates to: QPSQAPLLRATLSSIRQRYQSRV*PAVACL
Trigger: AAGGCAAGCCACAGCAGGGCAGACCCGGCTCTGATA...CCTCTGCCGGATGGAGGACAGTGTGGCTCTGAGAAGAGGGGCCTGTGAGGGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR TCA 90 bp GAGCCTCGCAAGGACTGCGTGCTGATGGCGTCTCCTCTGGGAATACTCAGTCCACTGGTGCCCAGGGCTTaGAGGATCAGCTGCAGTTCC +
Preference number: 4 (lower is better)
Translates to: EPRKDCVLMASPLGILSPLVPRA*RISCSS
Trigger: GGAACTGCAGCTGATCCTTCAAGCCCTGGGCACCAG...TGGACTGAGTATTCCCAGAGGAGACGCCATCAGCACGCAGTCCTTGCGAGGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR GCA 90 bp CAGCCCTCACAGGCCCCTCTTCTCAGAGCCACACTGTCCTCCATCCGGCAGAGGCGTCATGGAGGCTTTTaGCACTGTCCTGCTCCAACT +
Preference number: 4 (lower is better)
Translates to: QPSQAPLLRATLSSIRQRRHGGF*HCPAPT
Trigger: AGTTGGAGCAGGACAGTGGCAAAAGCCTCCATGACG...CCTCTGCCGGATGGAGGACAGTGTGGCTCTGAGAAGAGGGGCCTGTGAGGGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR TCA 90 bp GGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCGCGTCTCATGTCGGGAGCCTCTGCTGGGTaGTCTGGTAGCCAGCAGGAA +
Preference number: 4 (lower is better)
Translates to: GTSEVLSSQDHEAARLMSGASAG*SGSQQE
Trigger: TTCCTGCTGGCTACCAGATCACCCAGCAGAGGCTCC...CGACATGAGACGCGCAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR TCA 90 bp TCCCCAGCAGCGCACAGTCAACACTTCGCAGATCAGCTTCTCACTTTCATTTCAGATGTGGGCCCAGTCTaGGAGCCACTTCGGTGGCGG +
Preference number: 4 (lower is better)
Translates to: SPAAHSQHFADQLLTFISDVGPV*EPLRWR
Trigger: CCGCCACCGAAGTGGCTCTCAGACTGGGCCCACATC...TGAAATGAAAGTGAGAAGCTGATCTGCGAAGTGTTGACTGTGCGCTGCTGGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR TCA 90 bp CTCCATAGAGAGCAGGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCCTTTCCTCGGCTTCTaGGCCGTGTGGAGGGAAGGC +
Preference number: 4 (lower is better)
Translates to: LHREQALVKYCPHRTMKLPFLGF*AVWREG
Trigger: GCCTTCCCTCCACACGGCTCAGAAGCCGAGGAAAGG...CAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCCTGCTCTCTATGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR TCA 90 bp AGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCGCGTCTCATGTCGGTGGTCGCATCCACTCTCAGCTaGCCCTCTGCCATGTTGGCT +
Preference number: 4 (lower is better)
Translates to: SEVLSSQDHEAARLMSVVASTLS*PSAMLA
Trigger: AGCCAACATGGCAGAGGGTCAGCTGAGAGTGGATGC...GACCACCGACATGAGACGCGCAGCTTCATGGTCCTGTGAGGACAGTACTTCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CCA 90 bp AGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCGCGTCTCATGTCGGTGGTCCCATGTTGGCTTGGCTaGTGCCCAGGGCTTGAAGGA +
Preference number: 4 (lower is better)
Translates to: SEVLSSQDHEAARLMSVVPCWLG*CPGLEG
Trigger: TCCTTCAAGCCCTGGGCACCAGCCAAGCCAACATGG...GACCACCGACATGAGACGCGCAGCTTCATGGTCCTGTGAGGACAGTACTTCACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CCA 90 bp ACTTGTACAGCACATGAGTTCCAGCCCTCACAGGCCCCTCTTCTCAGAGCCACACCATGTTGGCTTGGCTaGTGCCCAGGGCTTGAAGGA +
Preference number: 4 (lower is better)
Translates to: TCTAHEFQPSQAPLLRATPCWLG*CPGLEG
Trigger: TCCTTCAAGCCCTGGGCACCAGCCAAGCCAACATGG...TGTGGCTCTGAGAAGAGGGGCCTGTGAGGGCTGGAACTCATGTGCTGTACAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR TCA 90 bp GGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTCAAGTCAAGATGTGGGCCCAGTCTaGGAGCCACTTCGGTGGCGG +
Preference number: 4 (lower is better)
Translates to: GHKECKWQLWESNRPSSQDVGPV*EPLRWR
Trigger: CCGCCACCGAAGTGGCTCTCAGACTGGGCCCACATC...TTGACTTGAGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR TCA 90 bp TCTCAGGTCATGGGGTCTCATAGGACACACACAGGTGTAAACTATTGCCTCCTGCCTTTCCTCGGCTTCTaGGCCGTGTGGAGGGAAGGC +
Preference number: 4 (lower is better)
Translates to: SQVMGSHRTHTGVNYCLLPFLGF*AVWREG
Trigger: GCCTTCCCTCCACACGGCTCAGAAGCCGAGGAAAGG...CAGGAGGCAATAGTTTACACCTGTGTGTGTCCTATGAGACCCCATGACCTGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR TCA 90 bp ACTTGTACAGCACATGAGTTCCAGCCCTCACAGGCCCCTCTTCTCAGAGCCACAGCCAGCAGGAAGGTCTaGGTAGAAGTAGTGCTTCCG +
Preference number: 4 (lower is better)
Translates to: TCTAHEFQPSQAPLLRATASRKV*VEVVLP
Trigger: CGGAAGCACTACTTCTACTCAGACCTTCCTGCTGGC...TGTGGCTCTGAGAAGAGGGGCCTGTGAGGGCTGGAACTCATGTGCTGTACAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR TCA 90 bp CTCCATAGAGAGCAGGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCTGGTGCCCAGGGCTTaGAGGATCAGCTGCAGTTCC +
Preference number: 4 (lower is better)
Translates to: LHREQALVKYCPHRTMKLLVPRA*RISCSS
Trigger: GGAACTGCAGCTGATCCTTCAAGCCCTGGGCACCAG...CAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCCTGCTCTCTATGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR TCA 90 bp AGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCGCGTCTCATGTCGGTGGTCCTCCAGCTGCTGTTCTaGCACGATCTGTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: SEVLSSQDHEAARLMSVVLQLLF*HDLCCC
Trigger: ACAGCAGCACAGATCGTGTCAGAACAGCAGCTGGAG...GACCACCGACATGAGACGCGCAGCTTCATGGTCCTGTGAGGACAGTACTTCACT
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR GCA 90 bp GAGCCTCGCAAGGACTGCGTGCTGATGGCGTCTCCTCTGGGAATACTCAGTCCACTTTTGCCACTGTCCTaGTCCAACTGGATCTGCTTG +
Preference number: 4 (lower is better)
Translates to: EPRKDCVLMASPLGILSPLLPLS*SNWICL
Trigger: CAAGCAGATCCAGTTGGAGCAGGACAGTGGCAAAAG...TGGACTGAGTATTCCCAGAGGAGACGCCATCAGCACGCAGTCCTTGCGAGGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR GCA 90 bp GCTGGGTGCCATCTTCTGGTGACGGGTGTGTCCACTTTCTTCTCATTCTTCAGTCAGCCTTTCTCTGGTTaGACTGGGGAGCTCCGGGAG +
Preference number: 4 (lower is better)
Translates to: AGCHLLVTGVSTFFSFFSQPFSG*TGELRE
Trigger: CTCCCGGAGCTCCCCAGTGCAACCAGAGAAAGGCTG...ACTGAAGAATGAGAAGAAAGTGGACACACCCGTCACCAGAAGATGGCACCCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR CAA 72 bp GATGTCCACACAGCCTCAGCTTTTGGCTGGGTGAAGTaGCTTAGCAACGCTGGGTGCCATCTTCTGGTGACG +
Preference number: 4 (lower is better)
Translates to: DVHTASAFGWVK*LSNAGCHLLVT
Trigger: CGTCACCAGAAGATGGCACCCAGCGTTGCTAAGCAACTTCACCCAGCCAAAAGCTGAGGCTGTGTGGACATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR TCA 90 bp CTCCATAGAGAGCAGGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGGGAAGGCTGAGCCACTaGACTCTGTCTCCTAGCCCA +
Preference number: 4 (lower is better)
Translates to: LHREQALVKYCPHRTMKLGRLSH*TLSPSP
Trigger: TGGGCTAGGAGACAGAGTTCAGTGGCTCAGCCTTCC...CAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCCTGCTCTCTATGGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR TCA 90 bp GGAGAGGTGGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTGTGTGGAGGGAAGGCTaGGCCACTGAACTCTGTCTC +
Preference number: 4 (lower is better)
Translates to: GEVATKNVNGNSGRATDPVWREG*ATELCL
Trigger: GAGACAGAGTTCAGTGGCTCAGCCTTCCCTCCACAC...AGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCCACCTCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR TCA 90 bp TCTCAGGTCATGGGGTCTCATAGGACACACACAGGTGTAAACTATTGCCTCCTGGGAGCCTCTGCTGGGTaGTCTGGTAGCCAGCAGGAA +
Preference number: 4 (lower is better)
Translates to: SQVMGSHRTHTGVNYCLLGASAG*SGSQQE
Trigger: TTCCTGCTGGCTACCAGATCACCCAGCAGAGGCTCC...CAGGAGGCAATAGTTTACACCTGTGTGTGTCCTATGAGACCCCATGACCTGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR TCA 90 bp ACTTGTACAGCACATGAGTTCCAGCCCTCACAGGCCCCTCTTCTCAGAGCCACAGTCTTGGTGGTCACCTaGCTGGGTTTCTTCCCTAGA +
Preference number: 4 (lower is better)
Translates to: TCTAHEFQPSQAPLLRATVLVVT*LGFFPR
Trigger: TCTAGGGAAGAAACCCAGTCAGGTGACCACCAAGAC...TGTGGCTCTGAGAAGAGGGGCCTGTGAGGGCTGGAACTCATGTGCTGTACAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR TCA 90 bp GGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCGCGTCTCATGTCGCCAACTGGATCTGCTTaGTCCTCACTGTCTTGGTGG +
Preference number: 4 (lower is better)
Translates to: GTSEVLSSQDHEAARLMSPTGSA*SSLSWW
Trigger: CCACCAAGACAGTGAGGATCAAGCAGATCCAGTTGG...CGACATGAGACGCGCAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR TCA 90 bp ACTTGTACAGCACATGAGTTCCAGCCCTCACAGGCCCCTCTTCTCAGAGCCACACCAACTGGATCTGCTTaGTCCTCACTGTCTTGGTGG +
Preference number: 4 (lower is better)
Translates to: TCTAHEFQPSQAPLLRATPTGSA*SSLSWW
Trigger: CCACCAAGACAGTGAGGATCAAGCAGATCCAGTTGG...TGTGGCTCTGAGAAGAGGGGCCTGTGAGGGCTGGAACTCATGTGCTGTACAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR TCA 90 bp TCCCCAGCAGCGCACAGTCAACACTTCGCAGATCAGCTTCTCACTTTCATTTCACTGGTGCCCAGGGCTTaGAGGATCAGCTGCAGTTCC +
Preference number: 4 (lower is better)
Translates to: SPAAHSQHFADQLLTFISLVPRA*RISCSS
Trigger: GGAACTGCAGCTGATCCTTCAAGCCCTGGGCACCAG...TGAAATGAAAGTGAGAAGCTGATCTGCGAAGTGTTGACTGTGCGCTGCTGGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR TCA 90 bp GGAGAGGTGGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTTCCTGTCCAGCAGGTTaGGGAGCTCAGCAAGTGCAG +
Preference number: 4 (lower is better)
Translates to: GEVATKNVNGNSGRATDPSCPAG*GAQQVQ
Trigger: CTGCACTTGCTGAGCTCCTCAACCTGCTGGACAGGA...AGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCCACCTCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR TCA 90 bp GAGCCTCGCAAGGACTGCGTGCTGATGGCGTCTCCTCTGGGAATACTCAGTCCACTGCTTAGCTGCCGATaGAGAAATTGCTTTCCTGTC +
Preference number: 4 (lower is better)
Translates to: EPRKDCVLMASPLGILSPLLSCR*RNCFPV
Trigger: GACAGGAAAGCAATTTCTTCATCGGCAGCTAAGCAG...TGGACTGAGTATTCCCAGAGGAGACGCCATCAGCACGCAGTCCTTGCGAGGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR GCA 90 bp GAGCCTCGCAAGGACTGCGTGCTGATGGCGTCTCCTCTGGGAATACTCAGTCCATGCTCCAACTGGATCTaGTTGATCCTCACTGTCTTG +
Preference number: 4 (lower is better)
Translates to: EPRKDCVLMASPLGILSPCSNWI*LILTVL
Trigger: CAAGACAGTGAGGATCAAGCAGATCCAGTTGGAGCA...TGGACTGAGTATTCCCAGAGGAGACGCCATCAGCACGCAGTCCTTGCGAGGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR GCA 90 bp GAGGTGGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTCAACAGCCTTTCTCTGGTTaGACTGGGGAGCTCCGGGAG +
Preference number: 4 (lower is better)
Translates to: EVATKNVNGNSGRATDPQQPFSG*TGELRE
Trigger: CTCCCGGAGCTCCCCAGTGCAACCAGAGAAAGGCTG...TTGAGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCCACCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CCA 90 bp CAGCCCTCACAGGCCCCTCTTCTCAGAGCCACACTGTCCTCCATCCGGCAGAGGTCTTTTATCACATTCTaGAAGAACTCCAGTAGGCCA +
Preference number: 4 (lower is better)
Translates to: QPSQAPLLRATLSSIRQRSFITF*KNSSRP
Trigger: TGGCCTACTGGAGTTCTTCCAGAATGTGATAAAAGA...CCTCTGCCGGATGGAGGACAGTGTGGCTCTGAGAAGAGGGGCCTGTGAGGGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR TCA 90 bp CTCCATAGAGAGCAGGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGGCCAGCAGGAAGGTCTaGGTAGAAGTAGTGCTTCCG +
Preference number: 4 (lower is better)
Translates to: LHREQALVKYCPHRTMKLASRKV*VEVVLP
Trigger: CGGAAGCACTACTTCTACTCAGACCTTCCTGCTGGC...CAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCCTGCTCTCTATGGAG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR TCA 90 bp CAGCTTCTCACTTTCATTTCATGGCCGCACAGAAGTCAGGATTCACCCCGCTCCCCAACTGGATCTGCTTaGTCCTCACTGTCTTGGTGG +
Preference number: 4 (lower is better)
Translates to: QLLTFISWPHRSQDSPRSPTGSA*SSLSWW
Trigger: CCACCAAGACAGTGAGGATCAAGCAGATCCAGTTGG...GGAGCGGGGTGAATCCTGACTTCTGTGCGGCCATGAAATGAAAGTGAGAAGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR TCA 90 bp GCTGGGTGCCATCTTCTGGTGACGGGTGTGTCCACTTTCTTCTCATTCTTCAGTCTCCAGCTGCTGTTCTaGCACGATCTGTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: AGCHLLVTGVSTFFSFFSLQLLF*HDLCCC
Trigger: ACAGCAGCACAGATCGTGTCAGAACAGCAGCTGGAG...ACTGAAGAATGAGAAGAAAGTGGACACACCCGTCACCAGAAGATGGCACCCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR TCA 90 bp GGAGAGGTGGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTTTTTCCAGGGCCTCTTaGTCCTGCATCAGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: GEVATKNVNGNSGRATDPFSRAS*SCISSS
Trigger: GCTGGAGCTGATGCAGGATCAAGAGGCCCTGGAAAA...AGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCCACCTCTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR GCA 90 bp AGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCGCGTCTCATGTCGGTGGTCAGTAACGCAAAGCTGTaGTCGGGAAGCATCCCATAC +
Preference number: 4 (lower is better)
Translates to: SEVLSSQDHEAARLMSVVSNAKL*SGSIPY
Trigger: GTATGGGATGCTTCCCGAGCACAGCTTTGCGTTACT...GACCACCGACATGAGACGCGCAGCTTCATGGTCCTGTGAGGACAGTACTTCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CCA 90 bp AGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCGCGTCTCATGTCGGTGGTCCTGTCCTGCTCCAACTaGATCTGCTTGATCCTCACT +
Preference number: 4 (lower is better)
Translates to: SEVLSSQDHEAARLMSVVLSCSN*ICLILT
Trigger: AGTGAGGATCAAGCAGATCCAGTTGGAGCAGGACAG...GACCACCGACATGAGACGCGCAGCTTCATGGTCCTGTGAGGACAGTACTTCACT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CCA 90 bp AGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCGCGTCTCATGTCGGTGGTCAGGCAGGTTGGGCTCTaGCATAAACCTGTAGTCTTG +
Preference number: 4 (lower is better)
Translates to: SEVLSSQDHEAARLMSVVRQVGL*HKPVVL
Trigger: CAAGACTACAGGTTTATGCCAGAGCCCAACCTGCCT...GACCACCGACATGAGACGCGCAGCTTCATGGTCCTGTGAGGACAGTACTTCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CCA 90 bp GGAGAGGTGGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTCCATCTATGGTGGTCTaGCAGAGCTTTTCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: GEVATKNVNGNSGRATDPPSMVV*QSFSRA
Trigger: GGCCCTGGAAAAGCTCTGCCAGACCACCATAGATGG...AGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCCACCTCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CCA 90 bp CTCCATAGAGAGCAGGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGGGACAGATGTCAAGCTaGCCCTCACTCCTGTTGCAC +
Preference number: 4 (lower is better)
Translates to: LHREQALVKYCPHRTMKLGQMSS*PSLLLH
Trigger: GTGCAACAGGAGTGAGGGCCAGCTTGACATCTGTCC...CAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCCTGCTCTCTATGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR TCA 90 bp CAGTCAACACTTCGCAGATCAGCTTCTCACTTTCATTTCATGGCCGCACAGAAGGGAAGGCTGAGCCACTaGACTCTGTCTCCTAGCCCA +
Preference number: 4 (lower is better)
Translates to: QSTLRRSASHFHFMAAQKGRLSH*TLSPSP
Trigger: TGGGCTAGGAGACAGAGTTCAGTGGCTCAGCCTTCC...CTTCTGTGCGGCCATGAAATGAAAGTGAGAAGCTGATCTGCGAAGTGTTGACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR TCA 90 bp CAGTCAACACTTCGCAGATCAGCTTCTCACTTTCATTTCATGGCCGCACAGAAGGTGTGGAGGGAAGGCTaGGCCACTGAACTCTGTCTC +
Preference number: 4 (lower is better)
Translates to: QSTLRRSASHFHFMAAQKVWREG*ATELCL
Trigger: GAGACAGAGTTCAGTGGCTCAGCCTTCCCTCCACAC...CTTCTGTGCGGCCATGAAATGAAAGTGAGAAGCTGATCTGCGAAGTGTTGACTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR TCA 90 bp TCTCTACCTTGGTCTGAGTACTGGCATTACAGGCTTGTATCACATAAATGGCTGCCTTTCCTCGGCTTCTaGGCCGTGTGGAGGGAAGGC +
Preference number: 4 (lower is better)
Translates to: SLPWSEYWHYRLVSHKWLPFLGF*AVWREG
Trigger: GCCTTCCCTCCACACGGCTCAGAAGCCGAGGAAAGG...CAGCCATTTATGTGATACAAGCCTGTAATGCCAGTACTCAGACCAAGGTAGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR TCA 90 bp GGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCGCGTCTCATGTCGGCTGCAAAGCACACTTaGGCTCCAGAGAAGAGTTTA +
Preference number: 4 (lower is better)
Translates to: GTSEVLSSQDHEAARLMSAAKHT*APEKSL
Trigger: TAAACTCTTCTCTGGAGCTCAAGTGTGCTTTGCAGC...CGACATGAGACGCGCAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR TCA 90 bp GGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTCAAGTCAATCAGCTGCAGTTCCCTaGCAGCTAGGGCTGCCTCTT +
Preference number: 4 (lower is better)
Translates to: GHKECKWQLWESNRPSSQSAAVP*QLGLPL
Trigger: AAGAGGCAGCCCTAGCTGTCAGGGAACTGCAGCTGA...TTGACTTGAGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR TCA 90 bp GCTTGTCTGAAACAGACCATAGAACTGATGTCCACACAGCCTCAGCTTTTGGCTGCATCCACTCTCAGCTaGCCCTCTGCCATGTTGGCT +
Preference number: 4 (lower is better)
Translates to: ACLKQTIELMSTQPQLLAASTLS*PSAMLA
Trigger: AGCCAACATGGCAGAGGGTCAGCTGAGAGTGGATGC...AGCCAAAAGCTGAGGCTGTGTGGACATCAGTTCTATGGTCTGTTTCAGACAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR TCA 90 bp GCTTGTCTGAAACAGACCATAGAACTGATGTCCACACAGCCTCAGCTTTTGGCTTCCTGTCCAGCAGGTTaGGGAGCTCAGCAAGTGCAG +
Preference number: 4 (lower is better)
Translates to: ACLKQTIELMSTQPQLLASCPAG*GAQQVQ
Trigger: CTGCACTTGCTGAGCTCCTCAACCTGCTGGACAGGA...AGCCAAAAGCTGAGGCTGTGTGGACATCAGTTCTATGGTCTGTTTCAGACAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR TCA 90 bp GGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCGCGTCTCATGTCGCTGCTTAGCTGCCGATaGAGAAATTGCTTTCCTGTC +
Preference number: 4 (lower is better)
Translates to: GTSEVLSSQDHEAARLMSLLSCR*RNCFPV
Trigger: GACAGGAAAGCAATTTCTTCATCGGCAGCTAAGCAG...CGACATGAGACGCGCAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR GCA 90 bp GGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCGCGTCTCATGTCGAGAATTTGGAGGTGCTaGAAAGCACACTTGAGCTCC +
Preference number: 4 (lower is better)
Translates to: GTSEVLSSQDHEAARLMSRIWRC*KAHLSS
Trigger: GGAGCTCAAGTGTGCTTTGCAGCACCTCCAAATTCT...CGACATGAGACGCGCAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR GCA 90 bp GGAGAGGTGGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTTATGTGGCAGTTCAGTaGCAAGCCAGTCATCACCGC +
Preference number: 4 (lower is better)
Translates to: GEVATKNVNGNSGRATDPYVAVQ*QASHHR
Trigger: GCGGTGATGACTGGCTTGGCACTGAACTGCCACATA...AGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCCACCTCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR GCA 90 bp AGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCGCGTCTCATGTCGGTGGTCTGCTCCAACTGGATCTaGTTGATCCTCACTGTCTTG +
Preference number: 4 (lower is better)
Translates to: SEVLSSQDHEAARLMSVVCSNWI*LILTVL
Trigger: CAAGACAGTGAGGATCAAGCAGATCCAGTTGGAGCA...GACCACCGACATGAGACGCGCAGCTTCATGGTCCTGTGAGGACAGTACTTCACT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR GCA 90 bp GGAGAGGTGGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTCGTCATGGAGGCTTTTaGCACTGTCCTGCTCCAACT +
Preference number: 4 (lower is better)
Translates to: GEVATKNVNGNSGRATDPRHGGF*HCPAPT
Trigger: AGTTGGAGCAGGACAGTGGCAAAAGCCTCCATGACG...AGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCCACCTCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR GCA 90 bp GAGGTGGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTCAATCTCAGCTGACCCTCTaGCATGTTGGCTTGGCTGGT +
Preference number: 4 (lower is better)
Translates to: EVATKNVNGNSGRATDPQSQLTL*HVGLAG
Trigger: ACCAGCCAAGCCAACATGGCAGAGGGTCAGCTGAGA...TTGAGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCCACCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR GCA 90 bp GTAGTTCAGGCTGATTTGGACTCTCTCTACCTTGGTCTGAGTACTGGCATTACACAGCCTTTCTCTGGTTaGACTGGGGAGCTCCGGGAG +
Preference number: 4 (lower is better)
Translates to: VVQADLDSLYLGLSTGITQPFSG*TGELRE
Trigger: CTCCCGGAGCTCCCCAGTGCAACCAGAGAAAGGCTG...TGTAATGCCAGTACTCAGACCAAGGTAGAGAGAGTCCAAATCAGCCTGAACTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CCA 90 bp CTCCATAGAGAGCAGGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGTCCATTGGCAGCAATTaGGAGCCTCTGCTGGGTGAT +
Preference number: 4 (lower is better)
Translates to: LHREQALVKYCPHRTMKLSIGSN*EPLLGD
Trigger: ATCACCCAGCAGAGGCTCCCAATTGCTGCCAATGGA...CAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCCTGCTCTCTATGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CCA 90 bp CAGCTTCTCACTTTCATTTCATGGCCGCACAGAAGTCAGGATTCACCCCGCTCCTCCTCACTGTCTTGGTaGTCACCTGACTGGGTTTCT +
Preference number: 4 (lower is better)
Translates to: QLLTFISWPHRSQDSPRSSSLSW*SPDWVS
Trigger: AGAAACCCAGTCAGGTGACCACCAAGACAGTGAGGA...GGAGCGGGGTGAATCCTGACTTCTGTGCGGCCATGAAATGAAAGTGAGAAGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CCA 90 bp CAGCTTCTCACTTTCATTTCATGGCCGCACAGAAGTCAGGATTCACCCCGCTCCAGGCAGGTTGGGCTCTaGCATAAACCTGTAGTCTTG +
Preference number: 4 (lower is better)
Translates to: QLLTFISWPHRSQDSPRSRQVGL*HKPVVL
Trigger: CAAGACTACAGGTTTATGCCAGAGCCCAACCTGCCT...GGAGCGGGGTGAATCCTGACTTCTGTGCGGCCATGAAATGAAAGTGAGAAGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CCA 90 bp GGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCGCGTCTCATGTCGAGCATGTCCCGAAGCTaGTCAATATTGATCACCTGC +
Preference number: 4 (lower is better)
Translates to: GTSEVLSSQDHEAARLMSSMSRS*SILITC
Trigger: GCAGGTGATCAATATTGACCAGCTTCGGGACATGCT...CGACATGAGACGCGCAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CCA 90 bp TCTCAGGTCATGGGGTCTCATAGGACACACACAGGTGTAAACTATTGCCTCCTGTTTCTCTGGTTGCACTaGGGAGCTCCGGGAGCATGT +
Preference number: 4 (lower is better)
Translates to: SQVMGSHRTHTGVNYCLLFLWLH*GAPGAC
Trigger: ACATGCTCCCGGAGCTCCCCAGTGCAACCAGAGAAA...CAGGAGGCAATAGTTTACACCTGTGTGTGTCCTATGAGACCCCATGACCTGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR TCA 90 bp CAGTCAACACTTCGCAGATCAGCTTCTCACTTTCATTTCATGGCCGCACAGAAGGCCAGCAGGAAGGTCTaGGTAGAAGTAGTGCTTCCG +
Preference number: 4 (lower is better)
Translates to: QSTLRRSASHFHFMAAQKASRKV*VEVVLP
Trigger: CGGAAGCACTACTTCTACTCAGACCTTCCTGCTGGC...CTTCTGTGCGGCCATGAAATGAAAGTGAGAAGCTGATCTGCGAAGTGTTGACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR TCA 90 bp TCTCTCTACCTTGGTCTGAGTACTGGCATTACAGGCTTGTATCACATAAATGGCGGAGCCTCTGCTGGGTaGTCTGGTAGCCAGCAGGAA +
Preference number: 4 (lower is better)
Translates to: SLYLGLSTGITGLYHINGGASAG*SGSQQE
Trigger: TTCCTGCTGGCTACCAGATCACCCAGCAGAGGCTCC...GCCATTTATGTGATACAAGCCTGTAATGCCAGTACTCAGACCAAGGTAGAGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR TCA 90 bp GAGGTGGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTCAAGTCTTGGTGGTCACCTaGCTGGGTTTCTTCCCTAGA +
Preference number: 4 (lower is better)
Translates to: EVATKNVNGNSGRATDPQVLVVT*LGFFPR
Trigger: TCTAGGGAAGAAACCCAGTCAGGTGACCACCAAGAC...TTGAGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCCACCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR TCA 90 bp GTAGTTCAGGCTGATTTGGACTCTCTCTACCTTGGTCTGAGTACTGGCATTACAGCATCCACTCTCAGCTaGCCCTCTGCCATGTTGGCT +
Preference number: 4 (lower is better)
Translates to: VVQADLDSLYLGLSTGITASTLS*PSAMLA
Trigger: AGCCAACATGGCAGAGGGTCAGCTGAGAGTGGATGC...TGTAATGCCAGTACTCAGACCAAGGTAGAGAGAGTCCAAATCAGCCTGAACTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR TCA 90 bp CAGCTTCTCACTTTCATTTCATGGCCGCACAGAAGTCAGGATTCACCCCGCTCCAGTGGTTCCCCAGGGTaGTGTACAGATATATTGGCA +
Preference number: 4 (lower is better)
Translates to: QLLTFISWPHRSQDSPRSSGSPG*CTDILA
Trigger: TGCCAATATATCTGTACATCACCCTGGGGAACCACT...GGAGCGGGGTGAATCCTGACTTCTGTGCGGCCATGAAATGAAAGTGAGAAGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR TCA 90 bp GAGGTGGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTCAAATATTGATCACCTGCTaGGAGTCTGCACCTCGTGGC +
Preference number: 4 (lower is better)
Translates to: EVATKNVNGNSGRATDPQILITC*ESAPRG
Trigger: GCCACGAGGTGCAGACTCTCAGCAGGTGATCAATAT...TTGAGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCCACCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR TCA 90 bp TCTCAGGTCATGGGGTCTCATAGGACACACACAGGTGTAAACTATTGCCTCCTGATATTGATCACCTGCTaGGAGTCTGCACCTCGTGGC +
Preference number: 4 (lower is better)
Translates to: SQVMGSHRTHTGVNYCLLILITC*ESAPRG
Trigger: GCCACGAGGTGCAGACTCTCAGCAGGTGATCAATAT...CAGGAGGCAATAGTTTACACCTGTGTGTGTCCTATGAGACCCCATGACCTGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR GCA 90 bp CTCCATAGAGAGCAGGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCTTTTGCCACTGTCCTaGTCCAACTGGATCTGCTTG +
Preference number: 4 (lower is better)
Translates to: LHREQALVKYCPHRTMKLLLPLS*SNWICL
Trigger: CAAGCAGATCCAGTTGGAGCAGGACAGTGGCAAAAG...CAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCCTGCTCTCTATGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR GCA 90 bp CAGTCAACACTTCGCAGATCAGCTTCTCACTTTCATTTCATGGCCGCACAGAAGTGTTGGCTTGGCTGGTaGCCAGGGCTTGAAGGATCA +
Preference number: 4 (lower is better)
Translates to: QSTLRRSASHFHFMAAQKCWLGW*PGLEGS
Trigger: TGATCCTTCAAGCCCTGGGCACCAGCCAAGCCAACA...CTTCTGTGCGGCCATGAAATGAAAGTGAGAAGCTGATCTGCGAAGTGTTGACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR GCA 90 bp GGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTCAAGTCAATGTTGGCTTGGCTGGTaGCCAGGGCTTGAAGGATCA +
Preference number: 4 (lower is better)
Translates to: GHKECKWQLWESNRPSSQCWLGW*PGLEGS
Trigger: TGATCCTTCAAGCCCTGGGCACCAGCCAAGCCAACA...TTGACTTGAGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR GCA 90 bp GTTTACATCTTCACCAGCCCGTGTTTAGGTCTGAACACACCACACTCCACTCATTGTTGGCTTGGCTGGTaGCCAGGGCTTGAAGGATCA +
Preference number: 4 (lower is better)
Translates to: VYIFTSPCLGLNTPHSTHCWLGW*PGLEGS
Trigger: TGATCCTTCAAGCCCTGGGCACCAGCCAAGCCAACA...ATGAGTGGAGTGTGGTGTGTTCAGACCTAAACACGGGCTGGTGAAGATGTAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR CCA 90 bp GGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCGCGTCTCATGTCGAGAAACCAGAGAATTTaGAGGTGCTGCAAAGCACAC +
Preference number: 4 (lower is better)
Translates to: GTSEVLSSQDHEAARLMSRNQRI*RCCKAH
Trigger: GTGTGCTTTGCAGCACCTCCAAATTCTCTGGTTTCT...CGACATGAGACGCGCAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CCA 90 bp AGATTAGGATCTGAGCACCTCTGGCCACTGGAGTTCAGGCTTGTAGAGCAGCAGAGCATGTCCCGAAGCTaGTCAATATTGATCACCTGC +
Preference number: 4 (lower is better)
Translates to: RLGSEHLWPLEFRLVEQQSMSRS*SILITC
Trigger: GCAGGTGATCAATATTGACCAGCTTCGGGACATGCT...CTGCTGCTCTACAAGCCTGAACTCCAGTGGCCAGAGGTGCTCAGATCCTAATCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR CCA 90 bp CAGTCAACACTTCGCAGATCAGCTTCTCACTTTCATTTCATGGCCGCACAGAAGTTTCTCTGGTTGCACTaGGGAGCTCCGGGAGCATGT +
Preference number: 4 (lower is better)
Translates to: QSTLRRSASHFHFMAAQKFLWLH*GAPGAC
Trigger: ACATGCTCCCGGAGCTCCCCAGTGCAACCAGAGAAA...CTTCTGTGCGGCCATGAAATGAAAGTGAGAAGCTGATCTGCGAAGTGTTGACTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CCA 90 bp GGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTCAAGTCAATTTCTCTGGTTGCACTaGGGAGCTCCGGGAGCATGT +
Preference number: 4 (lower is better)
Translates to: GHKECKWQLWESNRPSSQFLWLH*GAPGAC
Trigger: ACATGCTCCCGGAGCTCCCCAGTGCAACCAGAGAAA...TTGACTTGAGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CCA 90 bp GCTTGTCTGAAACAGACCATAGAACTGATGTCCACACAGCCTCAGCTTTTGGCTCCATCTATGGTGGTCTaGCAGAGCTTTTCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: ACLKQTIELMSTQPQLLAPSMVV*QSFSRA
Trigger: GGCCCTGGAAAAGCTCTGCCAGACCACCATAGATGG...AGCCAAAAGCTGAGGCTGTGTGGACATCAGTTCTATGGTCTGTTTCAGACAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR TCA 90 bp AGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCGCGTCTCATGTCGGTGGTCGAGGAAATCTGTGCATaGATTTCCAGTCCTACTACA +
Preference number: 4 (lower is better)
Translates to: SEVLSSQDHEAARLMSVVEEICA*ISSPTT
Trigger: TGTAGTAGGACTGGAAATTCATGCACAGATTTCCTC...GACCACCGACATGAGACGCGCAGCTTCATGGTCCTGTGAGGACAGTACTTCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR TCA 90 bp CTCCATAGAGAGCAGGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGAGTGGTTCCCCAGGGTaGTGTACAGATATATTGGCA +
Preference number: 4 (lower is better)
Translates to: LHREQALVKYCPHRTMKLSGSPG*CTDILA
Trigger: TGCCAATATATCTGTACATCACCCTGGGGAACCACT...CAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCCTGCTCTCTATGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR TCA 90 bp CTCCATAGAGAGCAGGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGGAAGCTGGTCAATATTaGTCACCTGCTGAGAGTCTG +
Preference number: 4 (lower is better)
Translates to: LHREQALVKYCPHRTMKLEAGQY*SPAESL
Trigger: CAGACTCTCAGCAGGTGATCAATATTGACCAGCTTC...CAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCCTGCTCTCTATGGAG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR TCA 90 bp TCTCTCTACCTTGGTCTGAGTACTGGCATTACAGGCTTGTATCACATAAATGGCTCCTGTCCAGCAGGTTaGGGAGCTCAGCAAGTGCAG +
Preference number: 4 (lower is better)
Translates to: SLYLGLSTGITGLYHINGSCPAG*GAQQVQ
Trigger: CTGCACTTGCTGAGCTCCTCAACCTGCTGGACAGGA...GCCATTTATGTGATACAAGCCTGTAATGCCAGTACTCAGACCAAGGTAGAGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR GCA 90 bp AGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCGCGTCTCATGTCGGTGGTCGTTGGAGGAAATCTGTaGATGAATTTCCAGTCCTAC +
Preference number: 4 (lower is better)
Translates to: SEVLSSQDHEAARLMSVVVGGNL*MNFQSY
Trigger: GTAGGACTGGAAATTCATGCACAGATTTCCTCCAAC...GACCACCGACATGAGACGCGCAGCTTCATGGTCCTGTGAGGACAGTACTTCACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR GCA 90 bp GTTTACATCTTCACCAGCCCGTGTTTAGGTCTGAACACACCACACTCCACTCATTATGTGGCAGTTCAGTaGCAAGCCAGTCATCACCGC +
Preference number: 4 (lower is better)
Translates to: VYIFTSPCLGLNTPHSTHYVAVQ*QASHHR
Trigger: GCGGTGATGACTGGCTTGGCACTGAACTGCCACATA...ATGAGTGGAGTGTGGTGTGTTCAGACCTAAACACGGGCTGGTGAAGATGTAAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR GCA 90 bp TCTCAGGTCATGGGGTCTCATAGGACACACACAGGTGTAAACTATTGCCTCCTGAGTAACGCAAAGCTGTaGTCGGGAAGCATCCCATAC +
Preference number: 4 (lower is better)
Translates to: SQVMGSHRTHTGVNYCLLSNAKL*SGSIPY
Trigger: GTATGGGATGCTTCCCGAGCACAGCTTTGCGTTACT...CAGGAGGCAATAGTTTACACCTGTGTGTGTCCTATGAGACCCCATGACCTGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR CCA 90 bp CAGTCAACACTTCGCAGATCAGCTTCTCACTTTCATTTCATGGCCGCACAGAAGTCCATTGGCAGCAATTaGGAGCCTCTGCTGGGTGAT +
Preference number: 4 (lower is better)
Translates to: QSTLRRSASHFHFMAAQKSIGSN*EPLLGD
Trigger: ATCACCCAGCAGAGGCTCCCAATTGCTGCCAATGGA...CTTCTGTGCGGCCATGAAATGAAAGTGAGAAGCTGATCTGCGAAGTGTTGACTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CCA 90 bp GAGGTGGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTCAATCCTCACTGTCTTGGTaGTCACCTGACTGGGTTTCT +
Preference number: 4 (lower is better)
Translates to: EVATKNVNGNSGRATDPQSSLSW*SPDWVS
Trigger: AGAAACCCAGTCAGGTGACCACCAAGACAGTGAGGA...TTGAGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCCACCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CCA 90 bp ACTTGTACAGCACATGAGTTCCAGCCCTCACAGGCCCCTCTTCTCAGAGCCACAGATGTACAGATATATTaGCATCCACTCTCAGCTGAC +
Preference number: 4 (lower is better)
Translates to: TCTAHEFQPSQAPLLRATDVQIY*HPLSAD
Trigger: GTCAGCTGAGAGTGGATGCCAATATATCTGTACATC...TGTGGCTCTGAGAAGAGGGGCCTGTGAGGGCTGGAACTCATGTGCTGTACAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR CAA 72 bp GGTGACGGGTGTGTCCACTTTCTTCTCATTCTTCAGTaGCCCTGGAATGATGGTGCCCAGCAATGTTCTTAC +
Preference number: 4 (lower is better)
Translates to: GDGCVHFLLILQ*PWNDGAQQCSY
Trigger: GTAAGAACATTGCTGGGCACCATCATTCCAGGGCAACTGAAGAATGAGAAGAAAGTGGACACACCCGTCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR TCA 90 bp CAAGTTAAGTTCTTCTGTTTACATCTTCACCAGCCCGTGTTTAGGTCTGAACACGTGTGGAGGGAAGGCTaGGCCACTGAACTCTGTCTC +
Preference number: 4 (lower is better)
Translates to: QVKFFCLHLHQPVFRSEHVWREG*ATELCL
Trigger: GAGACAGAGTTCAGTGGCTCAGCCTTCCCTCCACAC...GTGTTCAGACCTAAACACGGGCTGGTGAAGATGTAAACAGAAGAACTTAACTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR TCA 90 bp CAGCTTCTCACTTTCATTTCATGGCCGCACAGAAGTCAGGATTCACCCCGCTCCGAGGAAATCTGTGCATaGATTTCCAGTCCTACTACA +
Preference number: 4 (lower is better)
Translates to: QLLTFISWPHRSQDSPRSEEICA*ISSPTT
Trigger: TGTAGTAGGACTGGAAATTCATGCACAGATTTCCTC...GGAGCGGGGTGAATCCTGACTTCTGTGCGGCCATGAAATGAAAGTGAGAAGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR TCA 90 bp ACAGTCAACACTTCGCAGATCAGCTTCTCACTTTCATTTCATGGCCGCACAGAAGTCTTGGTGGTCACCTaGCTGGGTTTCTTCCCTAGA +
Preference number: 4 (lower is better)
Translates to: TVNTSQISFSLSFHGRTEVLVVT*LGFFPR
Trigger: TCTAGGGAAGAAACCCAGTCAGGTGACCACCAAGAC...TTCTGTGCGGCCATGAAATGAAAGTGAGAAGCTGATCTGCGAAGTGTTGACTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR TCA 90 bp GACTCTCTCTACCTTGGTCTGAGTACTGGCATTACAGGCTTGTATCACATAAATTCAGCTGCAGTTCCCTaGCAGCTAGGGCTGCCTCTT +
Preference number: 4 (lower is better)
Translates to: DSLYLGLSTGITGLYHINSAAVP*QLGLPL
Trigger: AAGAGGCAGCCCTAGCTGTCAGGGAACTGCAGCTGA...ATTTATGTGATACAAGCCTGTAATGCCAGTACTCAGACCAAGGTAGAGAGAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR TCA 90 bp TCTCAGGTCATGGGGTCTCATAGGACACACACAGGTGTAAACTATTGCCTCCTGAGTGGTTCCCCAGGGTaGTGTACAGATATATTGGCA +
Preference number: 4 (lower is better)
Translates to: SQVMGSHRTHTGVNYCLLSGSPG*CTDILA
Trigger: TGCCAATATATCTGTACATCACCCTGGGGAACCACT...CAGGAGGCAATAGTTTACACCTGTGTGTGTCCTATGAGACCCCATGACCTGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR GCA 90 bp ACAGTCAACACTTCGCAGATCAGCTTCTCACTTTCATTTCATGGCCGCACAGAATATGTGGCAGTTCAGTaGCAAGCCAGTCATCACCGC +
Preference number: 4 (lower is better)
Translates to: TVNTSQISFSLSFHGRTEYVAVQ*QASHHR
Trigger: GCGGTGATGACTGGCTTGGCACTGAACTGCCACATA...TTCTGTGCGGCCATGAAATGAAAGTGAGAAGCTGATCTGCGAAGTGTTGACTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR GCA 90 bp TCCCCAGCAGCGCACAGTCAACACTTCGCAGATCAGCTTCTCACTTTCATTTCATGCTCCAACTGGATCTaGTTGATCCTCACTGTCTTG +
Preference number: 4 (lower is better)
Translates to: SPAAHSQHFADQLLTFISCSNWI*LILTVL
Trigger: CAAGACAGTGAGGATCAAGCAGATCCAGTTGGAGCA...TGAAATGAAAGTGAGAAGCTGATCTGCGAAGTGTTGACTGTGCGCTGCTGGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR GCA 90 bp CAGTCAACACTTCGCAGATCAGCTTCTCACTTTCATTTCATGGCCGCACAGAAGCTTTTGCCACTGTCCTaGTCCAACTGGATCTGCTTG +
Preference number: 4 (lower is better)
Translates to: QSTLRRSASHFHFMAAQKLLPLS*SNWICL
Trigger: CAAGCAGATCCAGTTGGAGCAGGACAGTGGCAAAAG...CTTCTGTGCGGCCATGAAATGAAAGTGAGAAGCTGATCTGCGAAGTGTTGACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR GCA 90 bp ACAGTCAACACTTCGCAGATCAGCTTCTCACTTTCATTTCATGGCCGCACAGAACGTCATGGAGGCTTTTaGCACTGTCCTGCTCCAACT +
Preference number: 4 (lower is better)
Translates to: TVNTSQISFSLSFHGRTERHGGF*HCPAPT
Trigger: AGTTGGAGCAGGACAGTGGCAAAAGCCTCCATGACG...TTCTGTGCGGCCATGAAATGAAAGTGAGAAGCTGATCTGCGAAGTGTTGACTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR GCA 90 bp TCTCTACCTTGGTCTGAGTACTGGCATTACAGGCTTGTATCACATAAATGGCTGTCTCAGCTGACCCTCTaGCATGTTGGCTTGGCTGGT +
Preference number: 4 (lower is better)
Translates to: SLPWSEYWHYRLVSHKWLSQLTL*HVGLAG
Trigger: ACCAGCCAAGCCAACATGGCAGAGGGTCAGCTGAGA...CAGCCATTTATGTGATACAAGCCTGTAATGCCAGTACTCAGACCAAGGTAGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CCA 90 bp CAGTCAACACTTCGCAGATCAGCTTCTCACTTTCATTTCATGGCCGCACAGAAGCTGTCCTGCTCCAACTaGATCTGCTTGATCCTCACT +
Preference number: 4 (lower is better)
Translates to: QSTLRRSASHFHFMAAQKLSCSN*ICLILT
Trigger: AGTGAGGATCAAGCAGATCCAGTTGGAGCAGGACAG...CTTCTGTGCGGCCATGAAATGAAAGTGAGAAGCTGATCTGCGAAGTGTTGACTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CCA 90 bp GCTTGTCTGAAACAGACCATAGAACTGATGTCCACACAGCCTCAGCTTTTGGCTCTGTCCTGCTCCAACTaGATCTGCTTGATCCTCACT +
Preference number: 4 (lower is better)
Translates to: ACLKQTIELMSTQPQLLALSCSN*ICLILT
Trigger: AGTGAGGATCAAGCAGATCCAGTTGGAGCAGGACAG...AGCCAAAAGCTGAGGCTGTGTGGACATCAGTTCTATGGTCTGTTTCAGACAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR CCA 90 bp GACTCTCTCTACCTTGGTCTGAGTACTGGCATTACAGGCTTGTATCACATAAATCCATGTTGGCTTGGCTaGTGCCCAGGGCTTGAAGGA +
Preference number: 4 (lower is better)
Translates to: DSLYLGLSTGITGLYHINPCWLG*CPGLEG
Trigger: TCCTTCAAGCCCTGGGCACCAGCCAAGCCAACATGG...ATTTATGTGATACAAGCCTGTAATGCCAGTACTCAGACCAAGGTAGAGAGAGTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR TCA 90 bp GCTGGGTGCCATCTTCTGGTGACGGGTGTGTCCACTTTCTTCTCATTCTTCAGTGAGGAAATCTGTGCATaGATTTCCAGTCCTACTACA +
Preference number: 4 (lower is better)
Translates to: AGCHLLVTGVSTFFSFFSEEICA*ISSPTT
Trigger: TGTAGTAGGACTGGAAATTCATGCACAGATTTCCTC...ACTGAAGAATGAGAAGAAAGTGGACACACCCGTCACCAGAAGATGGCACCCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR TCA 90 bp GAGGTGGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTCAACTCTGTTCAAATCAATaGGTGTCTGTGACCTCAGGT +
Preference number: 4 (lower is better)
Translates to: EVATKNVNGNSGRATDPQLCSNQ*VSVTSG
Trigger: ACCTGAGGTCACAGACACTCATTGATTTGAACAGAG...TTGAGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCCACCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR TCA 90 bp TCAGTCCATGTGTGTTTTCCAACTGATAAAGTAGGTTTTGGAAATGGCTTCCACTCAGCTGCAGTTCCCTaGCAGCTAGGGCTGCCTCTT +
Preference number: 4 (lower is better)
Translates to: SVHVCFPTDKVGFGNGFHSAAVP*QLGLPL
Trigger: AAGAGGCAGCCCTAGCTGTCAGGGAACTGCAGCTGA...GTGGAAGCCATTTCCAAAACCTACTTTATCAGTTGGAAAACACACATGGACTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR GCA 90 bp GTAGTTCAGGCTGATTTGGACTCTCTCTACCTTGGTCTGAGTACTGGCATTACAAGTAACGCAAAGCTGTaGTCGGGAAGCATCCCATAC +
Preference number: 4 (lower is better)
Translates to: VVQADLDSLYLGLSTGITSNAKL*SGSIPY
Trigger: GTATGGGATGCTTCCCGAGCACAGCTTTGCGTTACT...TGTAATGCCAGTACTCAGACCAAGGTAGAGAGAGTCCAAATCAGCCTGAACTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CCA 90 bp CTCCATAGAGAGCAGGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGGATGTACAGATATATTaGCATCCACTCTCAGCTGAC +
Preference number: 4 (lower is better)
Translates to: LHREQALVKYCPHRTMKLDVQIY*HPLSAD
Trigger: GTCAGCTGAGAGTGGATGCCAATATATCTGTACATC...CAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCCTGCTCTCTATGGAG
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR TCA 90 bp AATCAAACACTTGAACAGCCTGTTTCATCAGGGCAACACATGGTCTGTGGCTTCGCTGCAAAGCACACTTaGGCTCCAGAGAAGAGTTTA +
Preference number: 4 (lower is better)
Translates to: NQTLEQPVSSGQHMVCGFAAKHT*APEKSL
Trigger: TAAACTCTTCTCTGGAGCTCAAGTGTGCTTTGCAGC...GAAGCCACAGACCATGTGTTGCCCTGATGAAACAGGCTGTTCAAGTGTTTGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR TCA 90 bp GACTCTCTCTACCTTGGTCTGAGTACTGGCATTACAGGCTTGTATCACATAAATATATTGATCACCTGCTaGGAGTCTGCACCTCGTGGC +
Preference number: 4 (lower is better)
Translates to: DSLYLGLSTGITGLYHINILITC*ESAPRG
Trigger: GCCACGAGGTGCAGACTCTCAGCAGGTGATCAATAT...ATTTATGTGATACAAGCCTGTAATGCCAGTACTCAGACCAAGGTAGAGAGAGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR GCA 90 bp TCAGTCCATGTGTGTTTTCCAACTGATAAAGTAGGTTTTGGAAATGGCTTCCACTCTCAGCTGACCCTCTaGCATGTTGGCTTGGCTGGT +
Preference number: 4 (lower is better)
Translates to: SVHVCFPTDKVGFGNGFHSQLTL*HVGLAG
Trigger: ACCAGCCAAGCCAACATGGCAGAGGGTCAGCTGAGA...GTGGAAGCCATTTCCAAAACCTACTTTATCAGTTGGAAAACACACATGGACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR CCA 90 bp GTTTACATCTTCACCAGCCCGTGTTTAGGTCTGAACACACCACACTCCACTCATAGAAACCAGAGAATTTaGAGGTGCTGCAAAGCACAC +
Preference number: 4 (lower is better)
Translates to: VYIFTSPCLGLNTPHSTHRNQRI*RCCKAH
Trigger: GTGTGCTTTGCAGCACCTCCAAATTCTCTGGTTTCT...ATGAGTGGAGTGTGGTGTGTTCAGACCTAAACACGGGCTGGTGAAGATGTAAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR CCA 90 bp GGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTCAAGTCAATGTCTCTCATTGGCATaGTGCACCCCAGCTTATAAT +
Preference number: 4 (lower is better)
Translates to: GHKECKWQLWESNRPSSQCLSLA*CTPAYN
Trigger: ATTATAAGCTGGGGTGCACCATGCCAATGAGAGACA...TTGACTTGAGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CCA 90 bp GCTTGTCTGAAACAGACCATAGAACTGATGTCCACACAGCCTCAGCTTTTGGCTTGTCTCTCATTGGCATaGTGCACCCCAGCTTATAAT +
Preference number: 4 (lower is better)
Translates to: ACLKQTIELMSTQPQLLACLSLA*CTPAYN
Trigger: ATTATAAGCTGGGGTGCACCATGCCAATGAGAGACA...AGCCAAAAGCTGAGGCTGTGTGGACATCAGTTCTATGGTCTGTTTCAGACAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR TCA 90 bp TCTCTACCTTGGTCTGAGTACTGGCATTACAGGCTTGTATCACATAAATGGCTGGCTGCAAAGCACACTTaGGCTCCAGAGAAGAGTTTA +
Preference number: 4 (lower is better)
Translates to: SLPWSEYWHYRLVSHKWLAAKHT*APEKSL
Trigger: TAAACTCTTCTCTGGAGCTCAAGTGTGCTTTGCAGC...CAGCCATTTATGTGATACAAGCCTGTAATGCCAGTACTCAGACCAAGGTAGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR TCA 90 bp GTAGTTCAGGCTGATTTGGACTCTCTCTACCTTGGTCTGAGTACTGGCATTACACTCTGTTCAAATCAATaGGTGTCTGTGACCTCAGGT +
Preference number: 4 (lower is better)
Translates to: VVQADLDSLYLGLSTGITLCSNQ*VSVTSG
Trigger: ACCTGAGGTCACAGACACTCATTGATTTGAACAGAG...TGTAATGCCAGTACTCAGACCAAGGTAGAGAGAGTCCAAATCAGCCTGAACTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR TCA 90 bp TCTCTACCTTGGTCTGAGTACTGGCATTACAGGCTTGTATCACATAAATGGCTGGAAGCTGGTCAATATTaGTCACCTGCTGAGAGTCTG +
Preference number: 4 (lower is better)
Translates to: SLPWSEYWHYRLVSHKWLEAGQY*SPAESL
Trigger: CAGACTCTCAGCAGGTGATCAATATTGACCAGCTTC...CAGCCATTTATGTGATACAAGCCTGTAATGCCAGTACTCAGACCAAGGTAGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR TCA 90 bp TCTCTACCTTGGTCTGAGTACTGGCATTACAGGCTTGTATCACATAAATGGCTGCTGCTTAGCTGCCGATaGAGAAATTGCTTTCCTGTC +
Preference number: 4 (lower is better)
Translates to: SLPWSEYWHYRLVSHKWLLLSCR*RNCFPV
Trigger: GACAGGAAAGCAATTTCTTCATCGGCAGCTAAGCAG...CAGCCATTTATGTGATACAAGCCTGTAATGCCAGTACTCAGACCAAGGTAGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR GCA 90 bp TCTCTCTACCTTGGTCTGAGTACTGGCATTACAGGCTTGTATCACATAAATGGCAGAATTTGGAGGTGCTaGAAAGCACACTTGAGCTCC +
Preference number: 4 (lower is better)
Translates to: SLYLGLSTGITGLYHINGRIWRC*KAHLSS
Trigger: GGAGCTCAAGTGTGCTTTGCAGCACCTCCAAATTCT...GCCATTTATGTGATACAAGCCTGTAATGCCAGTACTCAGACCAAGGTAGAGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CCA 90 bp ACAGTCAACACTTCGCAGATCAGCTTCTCACTTTCATTTCATGGCCGCACAGAAAGAAACCAGAGAATTTaGAGGTGCTGCAAAGCACAC +
Preference number: 4 (lower is better)
Translates to: TVNTSQISFSLSFHGRTERNQRI*RCCKAH
Trigger: GTGTGCTTTGCAGCACCTCCAAATTCTCTGGTTTCT...TTCTGTGCGGCCATGAAATGAAAGTGAGAAGCTGATCTGCGAAGTGTTGACTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CCA 90 bp GTAGTTCAGGCTGATTTGGACTCTCTCTACCTTGGTCTGAGTACTGGCATTACATGTCTCTCATTGGCATaGTGCACCCCAGCTTATAAT +
Preference number: 4 (lower is better)
Translates to: VVQADLDSLYLGLSTGITCLSLA*CTPAYN
Trigger: ATTATAAGCTGGGGTGCACCATGCCAATGAGAGACA...TGTAATGCCAGTACTCAGACCAAGGTAGAGAGAGTCCAAATCAGCCTGAACTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CCA 90 bp TCTCTACCTTGGTCTGAGTACTGGCATTACAGGCTTGTATCACATAAATGGCTGAGCATGTCCCGAAGCTaGTCAATATTGATCACCTGC +
Preference number: 4 (lower is better)
Translates to: SLPWSEYWHYRLVSHKWLSMSRS*SILITC
Trigger: GCAGGTGATCAATATTGACCAGCTTCGGGACATGCT...CAGCCATTTATGTGATACAAGCCTGTAATGCCAGTACTCAGACCAAGGTAGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR TCA 90 bp CAAGTTAAGTTCTTCTGTTTACATCTTCACCAGCCCGTGTTTAGGTCTGAACACGAAGCTGGTCAATATTaGTCACCTGCTGAGAGTCTG +
Preference number: 4 (lower is better)
Translates to: QVKFFCLHLHQPVFRSEHEAGQY*SPAESL
Trigger: CAGACTCTCAGCAGGTGATCAATATTGACCAGCTTC...GTGTTCAGACCTAAACACGGGCTGGTGAAGATGTAAACAGAAGAACTTAACTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR TCA 90 bp AGAGAGCTAAAGGTGAGCATTCTGATGTATAACAGCATGATCTTATTCTTTCCATTTTCCAGGGCCTCTTaGTCCTGCATCAGCTCCAGC +
Preference number: 4 (lower is better)
Translates to: RELKVSILMYNSMILFFPFSRAS*SCISSS
Trigger: GCTGGAGCTGATGCAGGATCAAGAGGCCCTGGAAAA...TGGAAAGAATAAGATCATGCTGTTATACATCAGAATGCTCACCTTTAGCTCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR CCA 90 bp TCAGTCCATGTGTGTTTTCCAACTGATAAAGTAGGTTTTGGAAATGGCTTCCACAGGCAGGTTGGGCTCTaGCATAAACCTGTAGTCTTG +
Preference number: 4 (lower is better)
Translates to: SVHVCFPTDKVGFGNGFHRQVGL*HKPVVL
Trigger: CAAGACTACAGGTTTATGCCAGAGCCCAACCTGCCT...GTGGAAGCCATTTCCAAAACCTACTTTATCAGTTGGAAAACACACATGGACTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR CCA 90 bp GGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTCAAGTCAATCTTTTATCACATTCTaGAAGAACTCCAGTAGGCCA +
Preference number: 4 (lower is better)
Translates to: GHKECKWQLWESNRPSSQSFITF*KNSSRP
Trigger: TGGCCTACTGGAGTTCTTCCAGAATGTGATAAAAGA...TTGACTTGAGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR TCA 90 bp CAAGTTAAGTTCTTCTGTTTACATCTTCACCAGCCCGTGTTTAGGTCTGAACACCTCTGTTCAAATCAATaGGTGTCTGTGACCTCAGGT +
Preference number: 4 (lower is better)
Translates to: QVKFFCLHLHQPVFRSEHLCSNQ*VSVTSG
Trigger: ACCTGAGGTCACAGACACTCATTGATTTGAACAGAG...GTGTTCAGACCTAAACACGGGCTGGTGAAGATGTAAACAGAAGAACTTAACTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR CCA 90 bp TCTCTCTACCTTGGTCTGAGTACTGGCATTACAGGCTTGTATCACATAAATGGCGATGTACAGATATATTaGCATCCACTCTCAGCTGAC +
Preference number: 4 (lower is better)
Translates to: SLYLGLSTGITGLYHINGDVQIY*HPLSAD
Trigger: GTCAGCTGAGAGTGGATGCCAATATATCTGTACATC...GCCATTTATGTGATACAAGCCTGTAATGCCAGTACTCAGACCAAGGTAGAGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR GCA 90 bp CTTGGTCTGAGTACTGGCATTACAGGCTTGTATCACATAAATGGCTGTCAAATCGTTGGAGGAAATCTGTaGATGAATTTCCAGTCCTAC +
Preference number: 4 (lower is better)
Translates to: LGLSTGITGLYHINGCQIVGGNL*MNFQSY
Trigger: GTAGGACTGGAAATTCATGCACAGATTTCCTCCAAC...GATTTGACAGCCATTTATGTGATACAAGCCTGTAATGCCAGTACTCAGACCAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CCA 90 bp AGAGAGCTAAAGGTGAGCATTCTGATGTATAACAGCATGATCTTATTCTTTCCATCCTCACTGTCTTGGTaGTCACCTGACTGGGTTTCT +
Preference number: 4 (lower is better)
Translates to: RELKVSILMYNSMILFFPSSLSW*SPDWVS
Trigger: AGAAACCCAGTCAGGTGACCACCAAGACAGTGAGGA...TGGAAAGAATAAGATCATGCTGTTATACATCAGAATGCTCACCTTTAGCTCTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR GCA 90 bp TCAGTCCATGTGTGTTTTCCAACTGATAAAGTAGGTTTTGGAAATGGCTTCCACGTTGGAGGAAATCTGTaGATGAATTTCCAGTCCTAC +
Preference number: 4 (lower is better)
Translates to: SVHVCFPTDKVGFGNGFHVGGNL*MNFQSY
Trigger: GTAGGACTGGAAATTCATGCACAGATTTCCTCCAAC...GTGGAAGCCATTTCCAAAACCTACTTTATCAGTTGGAAAACACACATGGACTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR CCA 90 bp CTTGGTCTGAGTACTGGCATTACAGGCTTGTATCACATAAATGGCTGTCAAATCTCTTTTATCACATTCTaGAAGAACTCCAGTAGGCCA +
Preference number: 4 (lower is better)
Translates to: LGLSTGITGLYHINGCQISFITF*KNSSRP
Trigger: TGGCCTACTGGAGTTCTTCCAGAATGTGATAAAAGA...GATTTGACAGCCATTTATGTGATACAAGCCTGTAATGCCAGTACTCAGACCAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
3UTR CAA 72 bp ATCTTTCAAATGTATCTAGTCATGCAGTTCATGGGTTaGGCTATTTCCCTAGTAGCTGTGGTTATGAGCTCA +
Preference number: 4 (lower is better)
Translates to: IFQMYLVMQFMG*AISLVAVVMSS
Trigger: TGAGCTCATAACCACAGCTACTAGGGAAATAGCCAAACCCATGAACTGCATGACTAGATACATTTGAAAGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
3UTR CAA 72 bp TCTCTCTACCTTGGTCTGAGTACTGGCATTACAGGCTaGTATCACATAAATGGCTGTCAAATCCTTTATAAT +
Preference number: 4 (lower is better)
Translates to: SLYLGLSTGITG*YHINGCQILYN
Trigger: ATTATAAAGGATTTGACAGCCATTTATGTGATACAAGCCTGTAATGCCAGTACTCAGACCAAGGTAGAGAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CAA 90 bp CAGCCCTCACAGGCCCCTCTTCTCAGAGCCACACTGTCCTCCATCCGGCAGAGGCTCTGCCATGTTGGCTaGGCTGGTGCCCAGGGCTTG +
Preference number: 5 (lower is better)
Translates to: QPSQAPLLRATLSSIRQRLCHVG*AGAQGL
Trigger: CAAGCCCTGGGCACCAGCCAAGCCAACATGGCAGAG...CCTCTGCCGGATGGAGGACAGTGTGGCTCTGAGAAGAGGGGCCTGTGAGGGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS CCA 90 bp AGCTGTGCTCGGGAAGCATCCCATACTGCTGGACCAGCCTTTCTCTaGTTGCACTGGGGAGCTCCGGGAGCATGTCCCGAAGCTGGTCAA +
Preference number: 5 (lower is better)
Translates to: SCAREASHTAGPAFL*LHWGAPGACPEAGQ
Trigger: TTGACCAGCTTCGGGACATGCTCCCGGAGCTCCCCAGTGCAACCAGAGAAAGGCTGGTCCAGCAGTATGGGATGCTTCCCGAGCACAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS TCA 90 bp ACCTTTCCTCGGCTTCTGAGCCGTGTGGAGGGAAGGCTGAGCCACTaGACTCTGTCTCCTAGCCCAGTTGGATGTGGGCCCAGTCTGAGA +
Preference number: 5 (lower is better)
Translates to: TFPRLLSRVEGRLSH*TLSPSPVGCGPSLR
Trigger: TCTCAGACTGGGCCCACATCCAACTGGGCTAGGAGACAGAGTTCAGTGGCTCAGCCTTCCCTCCACACGGCTCAGAAGCCGAGGAAAGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS TCA 90 bp GCCACTGAACTCTGTCTCCTAGCCCAGTTGGATGTGGGCCCAGTCTaGGAGCCACTTCGGTGGCGGGAACCGCCATCTAGCCATGTTAAA +
Preference number: 5 (lower is better)
Translates to: ATELCLLAQLDVGPV*EPLRWREPPSSHVK
Trigger: TTTAACATGGCTAGATGGCGGTTCCCGCCACCGAAGTGGCTCTCAGACTGGGCCCACATCCAACTGGGCTAGGAGACAGAGTTCAGTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS GCA 90 bp GTGCTCGGGAAGCATCCCATACTGCTGGACCAGCCTTTCTCTGGTTaGACTGGGGAGCTCCGGGAGCATGTCCCGAAGCTGGTCAATATT +
Preference number: 5 (lower is better)
Translates to: VLGKHPILLDQPFSG*TGELREHVPKLVNI
Trigger: AATATTGACCAGCTTCGGGACATGCTCCCGGAGCTCCCCAGTGCAACCAGAGAAAGGCTGGTCCAGCAGTATGGGATGCTTCCCGAGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS-3UTR CAA 90 bp GAGCCTCGCAAGGACTGCGTGCTGATGGCGTCTCCTCTGGGAATACTCAGTCCATTCCTGTCCAGCAGGTaGAGGAGCTCAGCAAGTGCA +
Preference number: 5 (lower is better)
Translates to: EPRKDCVLMASPLGILSPFLSSR*RSSASA
Trigger: TGCACTTGCTGAGCTCCTCAACCTGCTGGACAGGAA...TGGACTGAGTATTCCCAGAGGAGACGCCATCAGCACGCAGTCCTTGCGAGGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS GCA 90 bp ACTTCATTCAGTAACGCAAAGCTGTGCTCGGGAAGCATCCCATACTaGTGGACCAGCCTTTCTCTGGTTGCACTGGGGAGCTCCGGGAGC +
Preference number: 5 (lower is better)
Translates to: TSFSNAKLCSGSIPY*WTSLSLVALGSSGS
Trigger: GCTCCCGGAGCTCCCCAGTGCAACCAGAGAAAGGCTGGTCCAGCAGTATGGGATGCTTCCCGAGCACAGCTTTGCGTTACTGAATGAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS CCA 90 bp TCATTCAGTAACGCAAAGCTGTGCTCGGGAAGCATCCCATACTGCTaGACCAGCCTTTCTCTGGTTGCACTGGGGAGCTCCGGGAGCATG +
Preference number: 5 (lower is better)
Translates to: SFSNAKLCSGSIPYC*TSLSLVALGSSGSM
Trigger: CATGCTCCCGGAGCTCCCCAGTGCAACCAGAGAAAGGCTGGTCCAGCAGTATGGGATGCTTCCCGAGCACAGCTTTGCGTTACTGAATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS-3UTR CAA 90 bp CTCCATAGAGAGCAGGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCTCTGCCATGTTGGCTaGGCTGGTGCCCAGGGCTTG +
Preference number: 5 (lower is better)
Translates to: LHREQALVKYCPHRTMKLLCHVG*AGAQGL
Trigger: CAAGCCCTGGGCACCAGCCAAGCCAACATGGCAGAG...CAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCCTGCTCTCTATGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CAA 90 bp CTCCATAGAGAGCAGGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCCAGCCTTTCTCTGGTaGCACTGGGGAGCTCCGGGA +
Preference number: 5 (lower is better)
Translates to: LHREQALVKYCPHRTMKLPAFLW*HWGAPG
Trigger: TCCCGGAGCTCCCCAGTGCAACCAGAGAAAGGCTGG...CAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCCTGCTCTCTATGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS TCA 90 bp TTGCACTGGGGAGCTCCGGGAGCATGTCCCGAAGCTGGTCAATATTaGTCACCTGCTGAGAGTCTGCACCTCGTGGCAGAGATGTGTCAT +
Preference number: 5 (lower is better)
Translates to: LHWGAPGACPEAGQY*SPAESLHLVAEMCH
Trigger: ATGACACATCTCTGCCACGAGGTGCAGACTCTCAGCAGGTGATCAATATTGACCAGCTTCGGGACATGCTCCCGGAGCTCCCCAGTGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS TCA 90 bp GGGTGTCCATCTATGGTGGTCTGGCAGAGCTTTTCCAGGGCCTCTTaGTCCTGCATCAGCTCCAGCTGCTGTTCTGACACGATCTGTGCT +
Preference number: 5 (lower is better)
Translates to: GCPSMVVWQSFSRAS*SCISSSCCSDTICA
Trigger: AGCACAGATCGTGTCAGAACAGCAGCTGGAGCTGATGCAGGATCAAGAGGCCCTGGAAAAGCTCTGCCAGACCACCATAGATGGACACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS-3UTR CAA 90 bp TCTCAGGTCATGGGGTCTCATAGGACACACACAGGTGTAAACTATTGCCTCCTGCCAGCCTTTCTCTGGTaGCACTGGGGAGCTCCGGGA +
Preference number: 5 (lower is better)
Translates to: SQVMGSHRTHTGVNYCLLPAFLW*HWGAPG
Trigger: TCCCGGAGCTCCCCAGTGCAACCAGAGAAAGGCTGG...CAGGAGGCAATAGTTTACACCTGTGTGTGTCCTATGAGACCCCATGACCTGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR CAA 90 bp GGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCGCGTCTCATGTCGTTCCTGTCCAGCAGGTaGAGGAGCTCAGCAAGTGCA +
Preference number: 5 (lower is better)
Translates to: GTSEVLSSQDHEAARLMSFLSSR*RSSASA
Trigger: TGCACTTGCTGAGCTCCTCAACCTGCTGGACAGGAA...CGACATGAGACGCGCAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CAA 90 bp CAGTCAACACTTCGCAGATCAGCTTCTCACTTTCATTTCATGGCCGCACAGAAGCTCTGCCATGTTGGCTaGGCTGGTGCCCAGGGCTTG +
Preference number: 5 (lower is better)
Translates to: QSTLRRSASHFHFMAAQKLCHVG*AGAQGL
Trigger: CAAGCCCTGGGCACCAGCCAAGCCAACATGGCAGAG...CTTCTGTGCGGCCATGAAATGAAAGTGAGAAGCTGATCTGCGAAGTGTTGACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CAA 90 bp AGATTAGGATCTGAGCACCTCTGGCCACTGGAGTTCAGGCTTGTAGAGCAGCAGACTACAGCTGCCCATTaGTGTTCACCTTTCCTCGGC +
Preference number: 5 (lower is better)
Translates to: RLGSEHLWPLEFRLVEQQTTAAH*CSPFLG
Trigger: GCCGAGGAAAGGTGAACACAAATGGGCAGCTGTAGT...CTGCTGCTCTACAAGCCTGAACTCCAGTGGCCAGAGGTGCTCAGATCCTAATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR CAA 90 bp CTCCATAGAGAGCAGGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGACTACAGCTGCCCATTaGTGTTCACCTTTCCTCGGC +
Preference number: 5 (lower is better)
Translates to: LHREQALVKYCPHRTMKLTTAAH*CSPFLG
Trigger: GCCGAGGAAAGGTGAACACAAATGGGCAGCTGTAGT...CAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCCTGCTCTCTATGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CAA 90 bp AGTGAAGTACTGTCCTCACAGGACCATGAAGCTGCGCGTCTCATGTCGGTGGTCTGCTGCAAAGCACACTaGAGCTCCAGAGAAGAGTTT +
Preference number: 5 (lower is better)
Translates to: SEVLSSQDHEAARLMSVVCCKAH*SSREEF
Trigger: AAACTCTTCTCTGGAGCTCAAGTGTGCTTTGCAGCA...GACCACCGACATGAGACGCGCAGCTTCATGGTCCTGTGAGGACAGTACTTCACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CAA 90 bp TCCCCAGCAGCGCACAGTCAACACTTCGCAGATCAGCTTCTCACTTTCATTTCATCGTCATGGAGGCTTTaGCCACTGTCCTGCTCCAAC +
Preference number: 5 (lower is better)
Translates to: SPAAHSQHFADQLLTFISSSWRL*PLSCSN
Trigger: GTTGGAGCAGGACAGTGGCAAAAGCCTCCATGACGA...TGAAATGAAAGTGAGAAGCTGATCTGCGAAGTGTTGACTGTGCGCTGCTGGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CAA 90 bp CTCCATAGAGAGCAGGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGGCAGATAGTCACCACTaGGGGGTGTCCATCTATGGT +
Preference number: 5 (lower is better)
Translates to: LHREQALVKYCPHRTMKLADSHH*GVSIYG
Trigger: ACCATAGATGGACACCCCCAAGTGGTGACTATCTGC...CAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCCTGCTCTCTATGGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS TCA 90 bp CCAGGACCACTTCAAGAAGGCCAATTCCGGCTCTGTTCAAATCAATaGGTGTCTGTGACCTCAGGTCGTCATGGAGGCTTTTGCCACTGT +
Preference number: 5 (lower is better)
Translates to: PGPLQEGQFRLCSNQ*VSVTSGRHGGFCHC
Trigger: ACAGTGGCAAAAGCCTCCATGACGACCTGAGGTCACAGACACTCATTGATTTGAACAGAGCCGGAATTGGCCTTCTTGAAGTGGTCCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS GCA 90 bp TGGAAGAACTCCAGTAGGCCAACTTCATTCAGTAACGCAAAGCTGTaGTCGGGAAGCATCCCATACTGCTGGACCAGCCTTTCTCTGGTT +
Preference number: 5 (lower is better)
Translates to: WKNSSRPTSFSNAKL*SGSIPYCWTSLSLV
Trigger: AACCAGAGAAAGGCTGGTCCAGCAGTATGGGATGCTTCCCGAGCACAGCTTTGCGTTACTGAATGAAGTTGGCCTACTGGAGTTCTTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS-3UTR CAA 90 bp GGAGAGGTGGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTTCCACACACCTCCTGTaGAGAACCGGTAATGTTCCA +
Preference number: 5 (lower is better)
Translates to: GEVATKNVNGNSGRATDPSTHLL*RTGNVP
Trigger: TGGAACATTACCGGTTCTCAACAGGAGGTGTGTGGA...AGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCCACCTCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CAA 90 bp GGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTCAAGTCAATCGTCATGGAGGCTTTaGCCACTGTCCTGCTCCAAC +
Preference number: 5 (lower is better)
Translates to: GHKECKWQLWESNRPSSQSSWRL*PLSCSN
Trigger: GTTGGAGCAGGACAGTGGCAAAAGCCTCCATGACGA...TTGACTTGAGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CAA 90 bp CTTGGTCTGAGTACTGGCATTACAGGCTTGTATCACATAAATGGCTGTCAAATCCCAGCCTTTCTCTGGTaGCACTGGGGAGCTCCGGGA +
Preference number: 5 (lower is better)
Translates to: LGLSTGITGLYHINGCQIPAFLW*HWGAPG
Trigger: TCCCGGAGCTCCCCAGTGCAACCAGAGAAAGGCTGG...GATTTGACAGCCATTTATGTGATACAAGCCTGTAATGCCAGTACTCAGACCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CAA 90 bp GGAGAGGTGGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTCTGCCGATGAAGAAATaGCTTTCCTGTCCAGCAGGT +
Preference number: 5 (lower is better)
Translates to: GEVATKNVNGNSGRATDPLPMKK*LSCPAG
Trigger: ACCTGCTGGACAGGAAAGCAATTTCTTCATCGGCAG...AGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCCACCTCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CAA 90 bp GCTGGGTGCCATCTTCTGGTGACGGGTGTGTCCACTTTCTTCTCATTCTTCAGTCTGCCGATGAAGAAATaGCTTTCCTGTCCAGCAGGT +
Preference number: 5 (lower is better)
Translates to: AGCHLLVTGVSTFFSFFSLPMKK*LSCPAG
Trigger: ACCTGCTGGACAGGAAAGCAATTTCTTCATCGGCAG...ACTGAAGAATGAGAAGAAAGTGGACACACCCGTCACCAGAAGATGGCACCCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR CAA 90 bp GGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTCAAGTCAACTTTTCCAGGGCCTCTaGATCCTGCATCAGCTCCAG +
Preference number: 5 (lower is better)
Translates to: GHKECKWQLWESNRPSSQLFQGL*ILHQLQ
Trigger: CTGGAGCTGATGCAGGATCAAGAGGCCCTGGAAAAG...TTGACTTGAGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CAA 90 bp GGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTCAAGTCAATGGCCCTCACTCCTGTaGCACACAAAGGACTTGCTC +
Preference number: 5 (lower is better)
Translates to: GHKECKWQLWESNRPSSQWPSLL*HTKDLL
Trigger: GAGCAAGTCCTTTGTGTGCAACAGGAGTGAGGGCCA...TTGACTTGAGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS TCA 90 bp TTCAAGAAGGCCAATTCCGGCTCTGTTCAAATCAATGAGTGTCTGTaGCCTCAGGTCGTCATGGAGGCTTTTGCCACTGTCCTGCTCCAA +
Preference number: 5 (lower is better)
Translates to: FKKANSGSVQINECL*PQVVMEAFATVLLQ
Trigger: TTGGAGCAGGACAGTGGCAAAAGCCTCCATGACGACCTGAGGTCACAGACACTCATTGATTTGAACAGAGCCGGAATTGGCCTTCTTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS CCA 90 bp GAACCTGAGGCTGTTGAGATTCTTTACCTCAGTCCTGACACCCAGTaGTTCCCCAGGGTGATGTACAGATATATTGGCATCCACTCTCAG +
Preference number: 5 (lower is better)
Translates to: EPEAVEILYLSPDTQ*FPRVMYRYIGIHSQ
Trigger: CTGAGAGTGGATGCCAATATATCTGTACATCACCCTGGGGAACCACTGGGTGTCAGGACTGAGGTAAAGAATCTCAACAGCCTCAGGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS-3UTR CAA 90 bp AGATTAGGATCTGAGCACCTCTGGCCACTGGAGTTCAGGCTTGTAGAGCAGCAGAAGAAACCAGAGAATTaGGAGGTGCTGCAAAGCACA +
Preference number: 5 (lower is better)
Translates to: RLGSEHLWPLEFRLVEQQKKPEN*EVLQST
Trigger: TGTGCTTTGCAGCACCTCCAAATTCTCTGGTTTCTT...CTGCTGCTCTACAAGCCTGAACTCCAGTGGCCAGAGGTGCTCAGATCCTAATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR CAA 90 bp CTCCATAGAGAGCAGGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGTCTTGTTTCCCTTCCTaGTCTCTCATTGGCATGGTG +
Preference number: 5 (lower is better)
Translates to: LHREQALVKYCPHRTMKLSCFPS*SLIGMV
Trigger: CACCATGCCAATGAGAGACAAGGAAGGGAAACAAGA...CAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCCTGCTCTCTATGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CAA 90 bp GTAGTTCAGGCTGATTTGGACTCTCTCTACCTTGGTCTGAGTACTGGCATTACATTCCTGTCCAGCAGGTaGAGGAGCTCAGCAAGTGCA +
Preference number: 5 (lower is better)
Translates to: VVQADLDSLYLGLSTGITFLSSR*RSSASA
Trigger: TGCACTTGCTGAGCTCCTCAACCTGCTGGACAGGAA...TGTAATGCCAGTACTCAGACCAAGGTAGAGAGAGTCCAAATCAGCCTGAACTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CAA 90 bp TCAGTCCATGTGTGTTTTCCAACTGATAAAGTAGGTTTTGGAAATGGCTTCCACCTGCCCTGCTGTGGCTaGCCTTCCGCACCAACCCAA +
Preference number: 5 (lower is better)
Translates to: SVHVCFPTDKVGFGNGFHLPCCG*PSAPTQ
Trigger: TTGGGTTGGTGCGGAAGGCAAGCCACAGCAGGGCAG...GTGGAAGCCATTTCCAAAACCTACTTTATCAGTTGGAAAACACACATGGACTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS GCA 90 bp CTCCAATATTTTCTTTATCAGAGCCGGGTCTGCCCTGCTGTGGCTTaGCTTCCGCACCAACCCAATCAGCTTATTTATAGCTTTGGGGTT +
Preference number: 5 (lower is better)
Translates to: LQYFLYQSRVCPAVA*LPHQPNQLIYSFGV
Trigger: AACCCCAAAGCTATAAATAAGCTGATTGGGTTGGTGCGGAAGGCAAGCCACAGCAGGGCAGACCCGGCTCTGATAAAGAAAATATTGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR CAA 90 bp ACAGTCAACACTTCGCAGATCAGCTTCTCACTTTCATTTCATGGCCGCACAGAAACTACAGCTGCCCATTaGTGTTCACCTTTCCTCGGC +
Preference number: 5 (lower is better)
Translates to: TVNTSQISFSLSFHGRTETTAAH*CSPFLG
Trigger: GCCGAGGAAAGGTGAACACAAATGGGCAGCTGTAGT...TTCTGTGCGGCCATGAAATGAAAGTGAGAAGCTGATCTGCGAAGTGTTGACTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CAA 90 bp ACTTGTACAGCACATGAGTTCCAGCCCTCACAGGCCCCTCTTCTCAGAGCCACATCAAACAAGGACTTCTaGTTTATGTGGCAGTTCAGT +
Preference number: 5 (lower is better)
Translates to: TCTAHEFQPSQAPLLRATSNKDF*FMWQFS
Trigger: ACTGAACTGCCACATAAACAAGAAGTCCTTGTTTGA...TGTGGCTCTGAGAAGAGGGGCCTGTGAGGGCTGGAACTCATGTGCTGTACAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR CAA 90 bp GGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTCAAGTCAATCCAACTGGATCTGCTaGATCCTCACTGTCTTGGTG +
Preference number: 5 (lower is better)
Translates to: GHKECKWQLWESNRPSSQSNWIC*ILTVLV
Trigger: CACCAAGACAGTGAGGATCAAGCAGATCCAGTTGGA...TTGACTTGAGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CAA 90 bp GCTGATGGCGTCTCCTCTGGGAATACTCAGTCCATGTGTGTTTTCCAACTGATATCCAACTGGATCTGCTaGATCCTCACTGTCTTGGTG +
Preference number: 5 (lower is better)
Translates to: ADGVSSGNTQSMCVFQLISNWIC*ILTVLV
Trigger: CACCAAGACAGTGAGGATCAAGCAGATCCAGTTGGA...TATCAGTTGGAAAACACACATGGACTGAGTATTCCCAGAGGAGACGCCATCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR CAA 90 bp AGATTAGGATCTGAGCACCTCTGGCCACTGGAGTTCAGGCTTGTAGAGCAGCAGCATAAACCTGTAGTCTaGTTTCCCTTCCTTGTCTCT +
Preference number: 5 (lower is better)
Translates to: RLGSEHLWPLEFRLVEQQHKPVV*FPFLVS
Trigger: AGAGACAAGGAAGGGAAACAAGACTACAGGTTTATG...CTGCTGCTCTACAAGCCTGAACTCCAGTGGCCAGAGGTGCTCAGATCCTAATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS CCA 90 bp TTCCTCTCCAATATTTTCTTTATCAGAGCCGGGTCTGCCCTGCTGTaGCTTGCCTTCCGCACCAACCCAATCAGCTTATTTATAGCTTTG +
Preference number: 5 (lower is better)
Translates to: FLSNIFFIRAGSALL*LAFRTNPISLFIAL
Trigger: CAAAGCTATAAATAAGCTGATTGGGTTGGTGCGGAAGGCAAGCCACAGCAGGGCAGACCCGGCTCTGATAAAGAAAATATTGGAGAGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR CAA 90 bp GAGGTGGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTCAAAAGAAACCAGAGAATTaGGAGGTGCTGCAAAGCACA +
Preference number: 5 (lower is better)
Translates to: EVATKNVNGNSGRATDPQKKPEN*EVLQST
Trigger: TGTGCTTTGCAGCACCTCCAAATTCTCTGGTTTCTT...TTGAGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCCACCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CAA 90 bp GTAGTTCAGGCTGATTTGGACTCTCTCTACCTTGGTCTGAGTACTGGCATTACATCCACACACCTCCTGTaGAGAACCGGTAATGTTCCA +
Preference number: 5 (lower is better)
Translates to: VVQADLDSLYLGLSTGITSTHLL*RTGNVP
Trigger: TGGAACATTACCGGTTCTCAACAGGAGGTGTGTGGA...TGTAATGCCAGTACTCAGACCAAGGTAGAGAGAGTCCAAATCAGCCTGAACTAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CAA 90 bp CAGTCAACACTTCGCAGATCAGCTTCTCACTTTCATTTCATGGCCGCACAGAAGTCTTGTTTCCCTTCCTaGTCTCTCATTGGCATGGTG +
Preference number: 5 (lower is better)
Translates to: QSTLRRSASHFHFMAAQKSCFPS*SLIGMV
Trigger: CACCATGCCAATGAGAGACAAGGAAGGGAAACAAGA...CTTCTGTGCGGCCATGAAATGAAAGTGAGAAGCTGATCTGCGAAGTGTTGACTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS GCA 90 bp GCACACTTGAGCTCCAGAGAAGAGTTTAGAGTTGGAGGAAATCTGTaGATGAATTTCCAGTCCTACTACAGCTGCCCATTTGTGTTCACC +
Preference number: 5 (lower is better)
Translates to: AHLSSREEFRVGGNL*MNFQSYYSCPFVFT
Trigger: GGTGAACACAAATGGGCAGCTGTAGTAGGACTGGAAATTCATGCACAGATTTCCTCCAACTCTAAACTCTTCTCTGGAGCTCAAGTGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS-3UTR CAA 90 bp CAGTCAACACTTCGCAGATCAGCTTCTCACTTTCATTTCATGGCCGCACAGAAGAAGAAACCAGAGAATTaGGAGGTGCTGCAAAGCACA +
Preference number: 5 (lower is better)
Translates to: QSTLRRSASHFHFMAAQKKKPEN*EVLQST
Trigger: TGTGCTTTGCAGCACCTCCAAATTCTCTGGTTTCTT...CTTCTGTGCGGCCATGAAATGAAAGTGAGAAGCTGATCTGCGAAGTGTTGACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CAA 90 bp CTCCATAGAGAGCAGGCACTAGTGAAGTACTGTCCTCACAGGACCATGAAGCTGTCAAACAAGGACTTCTaGTTTATGTGGCAGTTCAGT +
Preference number: 5 (lower is better)
Translates to: LHREQALVKYCPHRTMKLSNKDF*FMWQFS
Trigger: ACTGAACTGCCACATAAACAAGAAGTCCTTGTTTGA...CAGCTTCATGGTCCTGTGAGGACAGTACTTCACTAGTGCCTGCTCTCTATGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS-3UTR CAA 90 bp TCTCTACCTTGGTCTGAGTACTGGCATTACAGGCTTGTATCACATAAATGGCTGCTGCCGATGAAGAAATaGCTTTCCTGTCCAGCAGGT +
Preference number: 5 (lower is better)
Translates to: SLPWSEYWHYRLVSHKWLLPMKK*LSCPAG
Trigger: ACCTGCTGGACAGGAAAGCAATTTCTTCATCGGCAG...CAGCCATTTATGTGATACAAGCCTGTAATGCCAGTACTCAGACCAAGGTAGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CAA 90 bp TCTCTACCTTGGTCTGAGTACTGGCATTACAGGCTTGTATCACATAAATGGCTGTGCTGCAAAGCACACTaGAGCTCCAGAGAAGAGTTT +
Preference number: 5 (lower is better)
Translates to: SLPWSEYWHYRLVSHKWLCCKAH*SSREEF
Trigger: AAACTCTTCTCTGGAGCTCAAGTGTGCTTTGCAGCA...CAGCCATTTATGTGATACAAGCCTGTAATGCCAGTACTCAGACCAAGGTAGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CAA 90 bp CTTGGTCTGAGTACTGGCATTACAGGCTTGTATCACATAAATGGCTGTCAAATCTCCAACTGGATCTGCTaGATCCTCACTGTCTTGGTG +
Preference number: 5 (lower is better)
Translates to: LGLSTGITGLYHINGCQISNWIC*ILTVLV
Trigger: CACCAAGACAGTGAGGATCAAGCAGATCCAGTTGGA...GATTTGACAGCCATTTATGTGATACAAGCCTGTAATGCCAGTACTCAGACCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CAA 90 bp GGCCACAAAGAATGTAAATGGCAACTCTGGGAGAGCAACAGACCCTCAAGTCAACATAAACCTGTAGTCTaGTTTCCCTTCCTTGTCTCT +
Preference number: 5 (lower is better)
Translates to: GHKECKWQLWESNRPSSQHKPVV*FPFLVS
Trigger: AGAGACAAGGAAGGGAAACAAGACTACAGGTTTATG...TTGACTTGAGGGTCTGTTGCTCTCCCAGAGTTGCCATTTACATTCTTTGTGGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS GCA 90 bp AGGCAGAGATGCATCAAAATAAGAAACCAGAGAATTTGGAGGTGCTaGAAAGCACACTTGAGCTCCAGAGAAGAGTTTAGAGTTGGAGGA +
Preference number: 5 (lower is better)
Translates to: RQRCIKIRNQRIWRC*KAHLSSREEFRVGG
Trigger: TCCTCCAACTCTAAACTCTTCTCTGGAGCTCAAGTGTGCTTTGCAGCACCTCCAAATTCTCTGGTTTCTTATTTTGATGCATCTCTGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS-3UTR CAA 90 bp AGAGAGCTAAAGGTGAGCATTCTGATGTATAACAGCATGATCTTATTCTTTCCATCGTCATGGAGGCTTTaGCCACTGTCCTGCTCCAAC +
Preference number: 5 (lower is better)
Translates to: RELKVSILMYNSMILFFPSSWRL*PLSCSN
Trigger: GTTGGAGCAGGACAGTGGCAAAAGCCTCCATGACGA...TGGAAAGAATAAGATCATGCTGTTATACATCAGAATGCTCACCTTTAGCTCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR CAA 90 bp AGAGAGCTAAAGGTGAGCATTCTGATGTATAACAGCATGATCTTATTCTTTCCACTTTTCCAGGGCCTCTaGATCCTGCATCAGCTCCAG +
Preference number: 5 (lower is better)
Translates to: RELKVSILMYNSMILFFPLFQGL*ILHQLQ
Trigger: CTGGAGCTGATGCAGGATCAAGAGGCCCTGGAAAAG...TGGAAAGAATAAGATCATGCTGTTATACATCAGAATGCTCACCTTTAGCTCTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR CAA 90 bp TCTCTCTACCTTGGTCTGAGTACTGGCATTACAGGCTTGTATCACATAAATGGCCATAAACCTGTAGTCTaGTTTCCCTTCCTTGTCTCT +
Preference number: 5 (lower is better)
Translates to: SLYLGLSTGITGLYHINGHKPVV*FPFLVS
Trigger: AGAGACAAGGAAGGGAAACAAGACTACAGGTTTATG...GCCATTTATGTGATACAAGCCTGTAATGCCAGTACTCAGACCAAGGTAGAGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CAA 90 bp AGAGAGCTAAAGGTGAGCATTCTGATGTATAACAGCATGATCTTATTCTTTCCATCCACACACCTCCTGTaGAGAACCGGTAATGTTCCA +
Preference number: 5 (lower is better)
Translates to: RELKVSILMYNSMILFFPSTHLL*RTGNVP
Trigger: TGGAACATTACCGGTTCTCAACAGGAGGTGTGTGGA...TGGAAAGAATAAGATCATGCTGTTATACATCAGAATGCTCACCTTTAGCTCTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS-3UTR CAA 90 bp TCTCTCTACCTTGGTCTGAGTACTGGCATTACAGGCTTGTATCACATAAATGGCTCAAACAAGGACTTCTaGTTTATGTGGCAGTTCAGT +
Preference number: 5 (lower is better)
Translates to: SLYLGLSTGITGLYHINGSNKDF*FMWQFS
Trigger: ACTGAACTGCCACATAAACAAGAAGTCCTTGTTTGA...GCCATTTATGTGATACAAGCCTGTAATGCCAGTACTCAGACCAAGGTAGAGAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107672.8
CDS-3UTR CAA 90 bp AGAGAGCTAAAGGTGAGCATTCTGATGTATAACAGCATGATCTTATTCTTTCCATCTTGTTTCCCTTCCTaGTCTCTCATTGGCATGGTG +
Preference number: 5 (lower is better)
Translates to: RELKVSILMYNSMILFFPSCFPS*SLIGMV
Trigger: CACCATGCCAATGAGAGACAAGGAAGGGAAACAAGA...TGGAAAGAATAAGATCATGCTGTTATACATCAGAATGCTCACCTTTAGCTCTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS TCA 72 bp CTCTGTCTCCTAGCCCAGTTGGATGTGGGCCCAGTCTaGGAGCCACTTCGGTGGCGGGAACCGCCATCTAGC +
Preference number: 6 (lower is better)
Translates to: LCLLAQLDVGPV*EPLRWREPPSS
Trigger: GCTAGATGGCGGTTCCCGCCACCGAAGTGGCTCTCAGACTGGGCCCACATCCAACTGGGCTAGGAGACAGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS TCA 72 bp CCCTCTGCCATGTTGGCTTGGCTGGTGCCCAGGGCTTaGAGGATCAGCTGCAGTTCCCTGACAGCTAGGGCT +
Preference number: 6 (lower is better)
Translates to: PSAMLAWLVPRA*RISCSSLTARA
Trigger: AGCCCTAGCTGTCAGGGAACTGCAGCTGATCCTTCAAGCCCTGGGCACCAGCCAAGCCAACATGGCAGAGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS CCA 72 bp CCACTCTCAGCTGACCCTCTGCCATGTTGGCTTGGCTaGTGCCCAGGGCTTGAAGGATCAGCTGCAGTTCCC +
Preference number: 6 (lower is better)
Translates to: PLSADPLPCWLG*CPGLEGSAAVP
Trigger: GGGAACTGCAGCTGATCCTTCAAGCCCTGGGCACCAGCCAAGCCAACATGGCAGAGGGTCAGCTGAGAGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS CCA 72 bp CGGGAAGCATCCCATACTGCTGGACCAGCCTTTCTCTaGTTGCACTGGGGAGCTCCGGGAGCATGTCCCGAA +
Preference number: 6 (lower is better)
Translates to: REASHTAGPAFL*LHWGAPGACPE
Trigger: TTCGGGACATGCTCCCGGAGCTCCCCAGTGCAACCAGAGAAAGGCTGGTCCAGCAGTATGGGATGCTTCCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS CAA 72 bp GGCATCCACTCTCAGCTGACCCTCTGCCATGTTGGCTaGGCTGGTGCCCAGGGCTTGAAGGATCAGCTGCAG +
Preference number: 6 (lower is better)
Translates to: GIHSQLTLCHVG*AGAQGLKDQLQ
Trigger: CTGCAGCTGATCCTTCAAGCCCTGGGCACCAGCCAAGCCAACATGGCAGAGGGTCAGCTGAGAGTGGATGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS GCA 72 bp AAGCATCCCATACTGCTGGACCAGCCTTTCTCTGGTTaGACTGGGGAGCTCCGGGAGCATGTCCCGAAGCTG +
Preference number: 6 (lower is better)
Translates to: KHPILLDQPFSG*TGELREHVPKL
Trigger: CAGCTTCGGGACATGCTCCCGGAGCTCCCCAGTGCAACCAGAGAAAGGCTGGTCCAGCAGTATGGGATGCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS CCA 72 bp TCCCATACTGCTGGACCAGCCTTTCTCTGGTTGCACTaGGGAGCTCCGGGAGCATGTCCCGAAGCTGGTCAA +
Preference number: 6 (lower is better)
Translates to: SHTAGPAFLWLH*GAPGACPEAGQ
Trigger: TTGACCAGCTTCGGGACATGCTCCCGGAGCTCCCCAGTGCAACCAGAGAAAGGCTGGTCCAGCAGTATGGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS CAA 90 bp TGTGCTCGGGAAGCATCCCATACTGCTGGACCAGCCTTTCTCTGGTaGCACTGGGGAGCTCCGGGAGCATGTCCCGAAGCTGGTCAATAT +
Preference number: 6 (lower is better)
Translates to: CAREASHTAGPAFLW*HWGAPGACPEAGQY
Trigger: ATATTGACCAGCTTCGGGACATGCTCCCGGAGCTCCCCAGTGCAACCAGAGAAAGGCTGGTCCAGCAGTATGGGATGCTTCCCGAGCACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS TCA 72 bp GGAGCTCCGGGAGCATGTCCCGAAGCTGGTCAATATTaGTCACCTGCTGAGAGTCTGCACCTCGTGGCAGAG +
Preference number: 6 (lower is better)
Translates to: GAPGACPEAGQY*SPAESLHLVAE
Trigger: CTCTGCCACGAGGTGCAGACTCTCAGCAGGTGATCAATATTGACCAGCTTCGGGACATGCTCCCGGAGCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS TCA 72 bp TCTATGGTGGTCTGGCAGAGCTTTTCCAGGGCCTCTTaGTCCTGCATCAGCTCCAGCTGCTGTTCTGACACG +
Preference number: 6 (lower is better)
Translates to: SMVVWQSFSRAS*SCISSSCCSDT
Trigger: CGTGTCAGAACAGCAGCTGGAGCTGATGCAGGATCAAGAGGCCCTGGAAAAGCTCTGCCAGACCACCATAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS CCA 72 bp ATAGGGCTGGGAAGGGTCTGTGGACAGATGTCAAGCTaGCCCTCACTCCTGTTGCACACAAAGGACTTGCTC +
Preference number: 6 (lower is better)
Translates to: IGLGRVCGQMSS*PSLLLHTKDLL
Trigger: GAGCAAGTCCTTTGTGTGCAACAGGAGTGAGGGCCAGCTTGACATCTGTCCACAGACCCTTCCCAGCCCTAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS TCA 72 bp AGTGTCCATTGGCAGCAATTGGGAGCCTCTGCTGGGTaGTCTGGTAGCCAGCAGGAAGGTCTGAGTAGAAGT +
Preference number: 6 (lower is better)
Translates to: SVHWQQLGASAG*SGSQQEGLSRS
Trigger: ACTTCTACTCAGACCTTCCTGCTGGCTACCAGATCACCCAGCAGAGGCTCCCAATTGCTGCCAATGGACACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS CCA 72 bp CACCCAGTGGTTCCCCAGGGTGATGTACAGATATATTaGCATCCACTCTCAGCTGACCCTCTGCCATGTTGG +
Preference number: 6 (lower is better)
Translates to: HPVVPQGDVQIY*HPLSADPLPCW
Trigger: CCAACATGGCAGAGGGTCAGCTGAGAGTGGATGCCAATATATCTGTACATCACCCTGGGGAACCACTGGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS CCA 72 bp TCACATCCATCACCACTTGGGGGTGTCCATCTATGGTaGTCTGGCAGAGCTTTTCCAGGGCCTCTTGATCCT +
Preference number: 6 (lower is better)
Translates to: SHPSPLGGVHLW*SGRAFPGPLDP
Trigger: AGGATCAAGAGGCCCTGGAAAAGCTCTGCCAGACCACCATAGATGGACACCCCCAAGTGGTGATGGATGTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS CAA 90 bp TCAAGCTGGCCCTCACTCCTGTTGCACACAAAGGACTTGCTCCTATaGCAGATAGTCACCACTTGGGGGTGTCCATCTATGGTGGTCTGG +
Preference number: 6 (lower is better)
Translates to: SSWPSLLLHTKDLLL*QIVTTWGCPSMVVW
Trigger: CCAGACCACCATAGATGGACACCCCCAAGTGGTGACTATCTGCAATAGGAGCAAGTCCTTTGTGTGCAACAGGAGTGAGGGCCAGCTTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS TCA 72 bp CCTCTGCTGGGTGATCTGGTAGCCAGCAGGAAGGTCTaGGTAGAAGTAGTGCTTCCGGTCAAACAAGGACTT +
Preference number: 6 (lower is better)
Translates to: PLLGDLVASRKV*VEVVLPVKQGL
Trigger: AAGTCCTTGTTTGACCGGAAGCACTACTTCTACTCAGACCTTCCTGCTGGCTACCAGATCACCCAGCAGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS TCA 72 bp AGCATGTCCCGAAGCTGGTCAATATTGATCACCTGCTaGGAGTCTGCACCTCGTGGCAGAGATGTGTCATCG +
Preference number: 6 (lower is better)
Translates to: SMSRSWSILITC*ESAPRGRDVSS
Trigger: CGATGACACATCTCTGCCACGAGGTGCAGACTCTCAGCAGGTGATCAATATTGACCAGCTTCGGGACATGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS GCA 72 bp CCGAAGCTGGTCAATATTGATCACCTGCTGAGAGTCTaGACCTCGTGGCAGAGATGTGTCATCGTAGAGCAC +
Preference number: 6 (lower is better)
Translates to: PKLVNIDHLLRV*TSWQRCVIVEH
Trigger: GTGCTCTACGATGACACATCTCTGCCACGAGGTGCAGACTCTCAGCAGGTGATCAATATTGACCAGCTTCGG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS GCA 72 bp TCCAGTAGGCCAACTTCATTCAGTAACGCAAAGCTGTaGTCGGGAAGCATCCCATACTGCTGGACCAGCCTT +
Preference number: 6 (lower is better)
Translates to: SSRPTSFSNAKL*SGSIPYCWTSL
Trigger: AAGGCTGGTCCAGCAGTATGGGATGCTTCCCGAGCACAGCTTTGCGTTACTGAATGAAGTTGGCCTACTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS GCA 72 bp TCTCCAATATTTTCTTTATCAGAGCCGGGTCTGCCCTaGTGTGGCTTGCCTTCCGCACCAACCCAATCAGCT +
Preference number: 6 (lower is better)
Translates to: SPIFSLSEPGLP*CGLPSAPTQSA
Trigger: AGCTGATTGGGTTGGTGCGGAAGGCAAGCCACAGCAGGGCAGACCCGGCTCTGATAAAGAAAATATTGGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000127348.8
CDS CAA 72 bp TCAAGCTGGCCCTCACTCCTGTTGCACACAAAGGACTaGCTCCTATTGCAGATAGTCACCACTTGGGGGTGT +
Preference number: 6 (lower is better)
Translates to: SSWPSLLLHTKD*LLLQIVTTWGC
Trigger: ACACCCCCAAGTGGTGACTATCTGCAATAGGAGCAAGTCCTTTGTGTGCAACAGGAGTGAGGGCCAGCTTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS TCA 72 bp CTTCCACAGCTCCTCAAACACCTGCTTAGCTGCCGATaGAGAAATTGCTTTCCTGTCCAGCAGGTTGAGGAG +
Preference number: 6 (lower is better)
Translates to: LPQLLKHLLSCR*RNCFPVQQVEE
Trigger: CTCCTCAACCTGCTGGACAGGAAAGCAATTTCTTCATCGGCAGCTAAGCAGGTGTTTGAGGAGCTGTGGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS GCA 72 bp GTCAAACAAGGACTTCTTGTTTATGTGGCAGTTCAGTaGCAAGCCAGTCATCACCGCGGCTTCCACACACCT +
Preference number: 6 (lower is better)
Translates to: VKQGLLVYVAVQ*QASHHRGFHTP
Trigger: AGGTGTGTGGAAGCCGCGGTGATGACTGGCTTGGCACTGAACTGCCACATAAACAAGAAGTCCTTGTTTGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS CAA 72 bp CCCTCACTCCTGTTGCACACAAAGGACTTGCTCCTATaGCAGATAGTCACCACTTGGGGGTGTCCATCTATG +
Preference number: 6 (lower is better)
Translates to: PSLLLHTKDLLL*QIVTTWGCPSM
Trigger: CATAGATGGACACCCCCAAGTGGTGACTATCTGCAATAGGAGCAAGTCCTTTGTGTGCAACAGGAGTGAGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS CAA 90 bp TTCAAATCAATGAGTGTCTGTGACCTCAGGTCGTCATGGAGGCTTTaGCCACTGTCCTGCTCCAACTGGATCTGCTTGATCCTCACTGTC +
Preference number: 6 (lower is better)
Translates to: FKSMSVCDLRSSWRL*PLSCSNWICLILTV
Trigger: GACAGTGAGGATCAAGCAGATCCAGTTGGAGCAGGACAGTGGCAAAAGCCTCCATGACGACCTGAGGTCACAGACACTCATTGATTTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS CCA 72 bp ACAAAGGACTTGCTCCTATTGCAGATAGTCACCACTTaGGGGTGTCCATCTATGGTGGTCTGGCAGAGCTTT +
Preference number: 6 (lower is better)
Translates to: TKDLLLLQIVTT*GCPSMVVWQSF
Trigger: AAAGCTCTGCCAGACCACCATAGATGGACACCCCCAAGTGGTGACTATCTGCAATAGGAGCAAGTCCTTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107674.2
CDS TCA 72 bp CTTCAAGAAGGCCAATTCCGGCTCTGTTCAAATCAATaGGTGTCTGTGACCTCAGGTCGTCATGGAGGCTTT +
Preference number: 6 (lower is better)
Translates to: LQEGQFRLCSNQ*VSVTSGRHGGF
Trigger: AAAGCCTCCATGACGACCTGAGGTCACAGACACTCATTGATTTGAACAGAGCCGGAATTGGCCTTCTTGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS GCA 72 bp GGAAATCTGTGCATGAATTTCCAGTCCTACTACAGCTaGCCATTTGTGTTCACCTTTCCTCGGCTTCTGAGC +
Preference number: 6 (lower is better)
Translates to: GNLCMNFQSYYS*PFVFTFPRLLS
Trigger: GCTCAGAAGCCGAGGAAAGGTGAACACAAATGGGCAGCTGTAGTAGGACTGGAAATTCATGCACAGATTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS CCA 72 bp GCTGTTGAGATTCTTTACCTCAGTCCTGACACCCAGTaGTTCCCCAGGGTGATGTACAGATATATTGGCATC +
Preference number: 6 (lower is better)
Translates to: AVEILYLSPDTQ*FPRVMYRYIGI
Trigger: GATGCCAATATATCTGTACATCACCCTGGGGAACCACTGGGTGTCAGGACTGAGGTAAAGAATCTCAACAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS CAA 72 bp CAGGCAGAGATGCATCAAAATAAGAAACCAGAGAATTaGGAGGTGCTGCAAAGCACACTTGAGCTCCAGAGA +
Preference number: 6 (lower is better)
Translates to: QAEMHQNKKPEN*EVLQSTLELQR
Trigger: TCTCTGGAGCTCAAGTGTGCTTTGCAGCACCTCCAAATTCTCTGGTTTCTTATTTTGATGCATCTCTGCCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS CCA 72 bp AGGCAGAGATGCATCAAAATAAGAAACCAGAGAATTTaGAGGTGCTGCAAAGCACACTTGAGCTCCAGAGAA +
Preference number: 6 (lower is better)
Translates to: RQRCIKIRNQRI*RCCKAHLSSRE
Trigger: TTCTCTGGAGCTCAAGTGTGCTTTGCAGCACCTCCAAATTCTCTGGTTTCTTATTTTGATGCATCTCTGCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS GCA 72 bp AGTCTTGTTTCCCTTCCTTGTCTCTCATTGGCATGGTaGACCCCAGCTTATAATCAAATGAACGAGTTTCAT +
Preference number: 6 (lower is better)
Translates to: SLVSLPCLSLAW*TPAYNQMNEFH
Trigger: ATGAAACTCGTTCATTTGATTATAAGCTGGGGTGCACCATGCCAATGAGAGACAAGGAAGGGAAACAAGACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS CCA 72 bp TGTAGTCTTGTTTCCCTTCCTTGTCTCTCATTGGCATaGTGCACCCCAGCTTATAATCAAATGAACGAGTTT +
Preference number: 6 (lower is better)
Translates to: CSLVSLPCLSLA*CTPAYNQMNEF
Trigger: AAACTCGTTCATTTGATTATAAGCTGGGGTGCACCATGCCAATGAGAGACAAGGAAGGGAAACAAGACTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS CAA 90 bp ATCAAAATAAGAAACCAGAGAATTTGGAGGTGCTGCAAAGCACACTaGAGCTCCAGAGAAGAGTTTAGAGTTGGAGGAAATCTGTGCATG +
Preference number: 6 (lower is better)
Translates to: IKIRNQRIWRCCKAH*SSREEFRVGGNLCM
Trigger: CATGCACAGATTTCCTCCAACTCTAAACTCTTCTCTGGAGCTCAAGTGTGCTTTGCAGCACCTCCAAATTCTCTGGTTTCTTATTTTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8
CDS TCA 72 bp TCTCATTGGCATGGTGCACCCCAGCTTATAATCAAATaGACGAGTTTCATTCAGAATTTCACCTCCATTCTC +
Preference number: 6 (lower is better)
Translates to: SHWHGAPQLIIK*TSFIQNFTSIL
Trigger: GAGAATGGAGGTGAAATTCTGAATGAAACTCGTTCATTTGATTATAAGCTGGGGTGCACCATGCCAATGAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000107672.8
ENSMUST00000107674.2
ENSMUST00000127348.8