RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GATAD2A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036180

Ensembl transcript IDs: ENSMUST00000065169.12, ENSMUST00000116463.4, ENSMUST00000177851.9, ENSMUST00000211960.2, ENSMUST00000212277.2, ENSMUST00000212478.2

Found 467 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTGCCATCTCTGGTGCCACTCCGAGCATCCTCTGGGGTTAGAGCCTaGCCAAGTGCACTGTGTATGACAGTGACTCTGGGTCTATGCAGT +
Preference number: 1 (lower is better)
Translates to: LPSLVPLRASSGVRA*PSALCMTVTLGLCS
Trigger: ACTGCATAGACCCAGAGTCACTGTCATACACAGTGCACTTGGGCAGGCTCTAACCCCAGAGGATGCTCGGAGTGGCACCAGAGATGGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR TCA 90 bp AACAGAACAGAAGTAGACTGGGCCCTTTCAGGCGTCCCTGTGGATTaGGAGGGAGTAAGCTCTGCTGACTCCAGACCTAAGGGCTGTGGC +
Preference number: 1 (lower is better)
Translates to: NRTEVDWALSGVPVD*EGVSSADSRPKGCG
Trigger: GCCACAGCCCTTAGGTCTGGAGTCAGCAGAGCTTACTCCCTCTCAATCCACAGGGACGCCTGAAAGGGCCCAGTCTACTTCTGTTCTGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR CCA 90 bp GAGAGGCCACCCCGGTGCTGCCGTTCCAAGGAGCCAGAAGACTTTTaGTCTATGTCATTGCCACTTAGGAAGGGTGGAGAACAGGAACTG +
Preference number: 1 (lower is better)
Translates to: ERPPRCCRSKEPEDF*SMSLPLRKGGEQEL
Trigger: CAGTTCCTGTTCTCCACCCTTCCTAAGTGGCAATGACATAGACCAAAAGTCTTCTGGCTCCTTGGAACGGCAGCACCGGGGTGGCCTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR CCA 90 bp AAGCTTTGGCTTCCCTGGGGTGGTGGGGAAGACCGTGATCAGGTCTaGAGGCTGTTCATAGGACCACTGTCCCAACAACCAAACCTAGGT +
Preference number: 1 (lower is better)
Translates to: KLWLPWGGGEDRDQV*RLFIGPLSQQPNLG
Trigger: ACCTAGGTTTGGTTGTTGGGACAGTGGTCCTATGAACAGCCTCCAGACCTGATCACGGTCTTCCCCACCACCCCAGGGAAGCCAAAGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR TCA 90 bp AAAGGCAAAAAGGAAAGAGAAGGCCCATTGGGAGGTCCCTCATTCTaGTCCTGGGCACCATGGTGGCACACTCTCCTGGCCAAAGCAAGG +
Preference number: 1 (lower is better)
Translates to: KGKKEREGPLGGPSF*SWAPWWHTLLAKAR
Trigger: CCTTGCTTTGGCCAGGAGAGTGTGCCACCATGGTGCCCAGGATCAGAATGAGGGACCTCCCAATGGGCCTTCTCTTTCCTTTTTGCCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR GCA 90 bp CTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATaGCTCTTGGCAGGCATGGGAATCATGAGATTGTGTCCATCAAAA +
Preference number: 1 (lower is better)
Translates to: LTPDLRAVAGPYLDG*LLAGMGIMRLCPSK
Trigger: TTTTGATGGACACAATCTCATGATTCCCATGCCTGCCAAGAGGCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR CCA 90 bp CTGGTGTCGGGCAAACTAAAGGCAAAAAGGAAAGAGAAGGCCCATTaGGAGGTCCCTCATTCTGATCCTGGGCACCATGGTGGCACACTC +
Preference number: 1 (lower is better)
Translates to: LVSGKLKAKRKEKAH*EVPHSDPGHHGGTL
Trigger: GAGTGTGCCACCATGGTGCCCAGGATCAGAATGAGGGACCTCCCAATGGGCCTTCTCTTTCCTTTTTGCCTTTAGTTTGCCCGACACCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR CCA 90 bp GCATTTACAATCCTTACTACTGCCTGGGGCAAGCTTTGGCTTCCCTaGGGTGGTGGGGAAGACCGTGATCAGGTCTGGAGGCTGTTCATA +
Preference number: 1 (lower is better)
Translates to: AFTILTTAWGKLWLP*GGGEDRDQVWRLFI
Trigger: TATGAACAGCCTCCAGACCTGATCACGGTCTTCCCCACCACCCCAGGGAAGCCAAAGCTTGCCCCAGGCAGTAGTAAGGATTGTAAATGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR GCA 90 bp CCAAACATGGCCCTTCAGTCCCCAGTCCTTATCATGTTGAGGGCTTaGTGCATAGGCCAGTGTGGTGCAGAAGAACAGGCAGCACTTTCA +
Preference number: 1 (lower is better)
Translates to: PNMALQSPVLIMLRA*CIGQCGAEEQAALS
Trigger: TGAAAGTGCTGCCTGTTCTTCTGCACCACACTGGCCTATGCAGCAAGCCCTCAACATGATAAGGACTGGGGACTGAAGGGCCATGTTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR CCA 90 bp ATTAAAGTCCCTAACTGTACTGTGTCAAGGGAAACCAGGGTTGGATaGGGAAACGACGGCGACCAATCACAAGAGCAGAAGGCCGCCCGT +
Preference number: 1 (lower is better)
Translates to: IKVPNCTVSRETRVG*GNDGDQSQEQKAAR
Trigger: ACGGGCGGCCTTCTGCTCTTGTGATTGGTCGCCGTCGTTTCCCCATCCAACCCTGGTTTCCCTTGACACAGTACAGTTAGGGACTTTAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR CCA 90 bp GAGCCTTTATTAGGAGGAGGCAGGGGGCGTGTCTGCAGAGGGCGGTaGTCCGCAGAACAAGGGTTTAAATTAAAGTCCCTAACTGTACTG +
Preference number: 1 (lower is better)
Translates to: EPLLGGGRGRVCRGR*SAEQGFKLKSLTVL
Trigger: CAGTACAGTTAGGGACTTTAATTTAAACCCTTGTTCTGCGGACCACCGCCCTCTGCAGACACGCCCCCTGCCTCCTCCTAATAAAGGCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR CCA 90 bp TGGAGGTGTTTGTTACAGCCAGCATTTACAATCCTTACTACTGCCTaGGGCAAGCTTTGGCTTCCCTGGGGTGGTGGGGAAGACCGTGAT +
Preference number: 1 (lower is better)
Translates to: WRCLLQPAFTILTTA*GKLWLPWGGGEDRD
Trigger: ATCACGGTCTTCCCCACCACCCCAGGGAAGCCAAAGCTTGCCCCAGGCAGTAGTAAGGATTGTAAATGCTGGCTGTAACAAACACCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR GCA 90 bp ACAGAATATGGGCTGCAATTCGTTCTAAGTGTGGAAGCCAGGGGTTaGAGTGAGCAGCAACAGACAACTAGAGTCAGGGTGGTACCTGCC +
Preference number: 1 (lower is better)
Translates to: TEYGLQFVLSVEARG*SEQQQTTRVRVVPA
Trigger: GGCAGGTACCACCCTGACTCTAGTTGTCTGTTGCTGCTCACTGCAACCCCTGGCTTCCACACTTAGAACGAATTGCAGCCCATATTCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR CCA 90 bp GTGAGGTGCATAAACTGGGCCTACAAGGGTTGGATGACAGGTGTATaGGAGAAGTCACAAGACTTGGAAGTCTGGATGCACCAGGACAAC +
Preference number: 1 (lower is better)
Translates to: VRCINWAYKGWMTGV*EKSQDLEVWMHQDN
Trigger: GTTGTCCTGGTGCATCCAGACTTCCAAGTCTTGTGACTTCTCCCATACACCTGTCATCCAACCCTTGTAGGCCCAGTTTATGCACCTCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR TCA 90 bp AAACTGACCACTTTTTGGAAACAATCCAAGGTCTTCAGGCTGACATaGCTCATGGCGAGGACCACTCTTACCCTCAACAGCATTCAGGCT +
Preference number: 1 (lower is better)
Translates to: KLTTFWKQSKVFRLT*LMARTTLTLNSIQA
Trigger: AGCCTGAATGCTGTTGAGGGTAAGAGTGGTCCTCGCCATGAGTCATGTCAGCCTGAAGACCTTGGATTGTTTCCAAAAAGTGGTCAGTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR CCA 90 bp ACTGTCCCAACAACCAAACCTAGGTCACACATCTGTCAAAAGGTCTaGTTCGACAAATACAGATGTGTTCTGTGCTTGGCTCCTCCCTTC +
Preference number: 1 (lower is better)
Translates to: TVPTTKPRSHICQKV*FDKYRCVLCLAPPF
Trigger: GAAGGGAGGAGCCAAGCACAGAACACATCTGTATTTGTCGAACCAGACCTTTTGACAGATGTGTGACCTAGGTTTGGTTGTTGGGACAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR CCA 90 bp TCTGTCAAAAGGTCTGGTTCGACAAATACAGATGTGTTCTGTGCTTaGCTCCTCCCTTCAAACCTGTCCCTAGCAGTTAGTAGAGGAAAT +
Preference number: 1 (lower is better)
Translates to: SVKRSGSTNTDVFCA*LLPSNLSLAVSRGN
Trigger: ATTTCCTCTACTAACTGCTAGGGACAGGTTTGAAGGGAGGAGCCAAGCACAGAACACATCTGTATTTGTCGAACCAGACCTTTTGACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR TCA 90 bp TTTGGTCTATGTCATTGCCACTTAGGAAGGGTGGAGAACAGGAACTaGCTTGCCAGGCACAAAAATACTCAAGGACTAAGAAATGCTTGC +
Preference number: 1 (lower is better)
Translates to: FGLCHCHLGRVENRN*LARHKNTQGLRNAC
Trigger: GCAAGCATTTCTTAGTCCTTGAGTATTTTTGTGCCTGGCAAGTCAGTTCCTGTTCTCCACCCTTCCTAAGTGGCAATGACATAGACCAAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR TCA 90 bp ATTTCTTTATTGTCCTTCAGGGTTTCAGACTTCCCCATGACACAGTaGCTACCAATTTCAGCTCATTTATTGGAACATCTATTCCAGTTT +
Preference number: 1 (lower is better)
Translates to: ISLLSFRVSDFPMTQ*LPISAHLLEHLFQF
Trigger: AAACTGGAATAGATGTTCCAATAAATGAGCTGAAATTGGTAGTCACTGTGTCATGGGGAAGTCTGAAACCCTGAAGGACAATAAAGAAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR CCA 90 bp CTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGTCACAGTGTCCAAGCTCCCACCCACGCTaGCCAGGCAGAGCTGGCCCC +
Preference number: 2 (lower is better)
Translates to: LNFGSPRCQPGPGVSQCPSSHPR*PGRAGP
Trigger: GGGGCCAGCTCTGCCTGGCCAGCGTGGGTGGGAGCT...TGGACACTGTGACACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAG
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR-3UTR GCA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCTTCGGGAGCCCCCGGTaGCAGCCTGGCCCGGGTGTG +
Preference number: 2 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCFGSPR*QPGPGV
Trigger: CACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAA...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR-3UTR CCA 90 bp GAAACCAGGGTTGGATGGGGAAACGACGGCGACCAATCACAAGAGCAGAAGGCCAGCTCCCACCCACGCTaGCCAGGCAGAGCTGGCCCC +
Preference number: 2 (lower is better)
Translates to: ETRVGWGNDGDQSQEQKASSHPR*PGRAGP
Trigger: GGGGCCAGCTCTGCCTGGCCAGCGTGGGTGGGAGCT...GGCCTTCTGCTCTTGTGATTGGTCGCCGTCGTTTCCCCATCCAACCCTGGTTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR-3UTR CCA 90 bp CTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGTCACAGTGTCCAAAAGAGAAGGCCCATTaGGAGGTCCCTCATTCTGAT +
Preference number: 2 (lower is better)
Translates to: LNFGSPRCQPGPGVSQCPKEKAH*EVPHSD
Trigger: ATCAGAATGAGGGACCTCCCAATGGGCCTTCTCTTT...TGGACACTGTGACACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR-3UTR TCA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCACCTATAGATGGCCATaGAGAGGCAGAGACTGGGGA +
Preference number: 2 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCTYRWP*RGRDWG
Trigger: TCCCCAGTCTCTGCCTCTTCATGGCCATCTATAGGT...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR-3UTR GCA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCTCTGGGGTTAGAGCCTaGCCAAGTGCACTGTGTATG +
Preference number: 2 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCSGVRA*PSALCM
Trigger: CATACACAGTGCACTTGGGCAGGCTCTAACCCCAGA...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR-3UTR CCA 90 bp TGTGGCTGGGCCCTACCTGGATGGATGCCTCTTGGCAGGCATGGGAATCATGAGCTAGACCAAGGGCCTTaGGAGAGAAGAGGGCCTGTC +
Preference number: 2 (lower is better)
Translates to: CGWALPGWMPLGRHGNHELDQGP*ERRGPV
Trigger: GACAGGCCCTCTTCTCTCCCAAGGCCCTTGGTCTAG...CTCATGATTCCCATGCCTGCCAAGAGGCATCCATCCAGGTAGGGCCCAGCCACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR-3UTR GCA 90 bp GAAACCAGGGTTGGATGGGGAAACGACGGCGACCAATCACAAGAGCAGAAGGCCCCCTACCTGGATGGATaGCTCTTGGCAGGCATGGGA +
Preference number: 2 (lower is better)
Translates to: ETRVGWGNDGDQSQEQKAPYLDG*LLAGMG
Trigger: TCCCATGCCTGCCAAGAGGCATCCATCCAGGTAGGG...GGCCTTCTGCTCTTGTGATTGGTCGCCGTCGTTTCCCCATCCAACCCTGGTTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR-3UTR CCA 90 bp AGCAACCAGCTCTGGCTCCAGCACAGTGGACTCAGCATCTCTCTGGAGCCTCTAGGTGGCACACTCTCCTaGCCAAAGCAAGGCAACAGC +
Preference number: 2 (lower is better)
Translates to: SNQLWLQHSGLSISLEPLGGTLS*PKQGNS
Trigger: GCTGTTGCCTTGCTTTGGCCAGGAGAGTGTGCCACC...TAGAGGCTCCAGAGAGATGCTGAGTCCACTGTGCTGGAGCCAGAGCTGGTTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR-3UTR TCA 90 bp GGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGAAGGAGGTCCCTCATTCTaGTCCTGGGCACCATGGTGG +
Preference number: 2 (lower is better)
Translates to: GPKVRVSAGVGQTKGKKEGGPSF*SWAPWW
Trigger: CCACCATGGTGCCCAGGATCAGAATGAGGGACCTCC...TTCCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR-3UTR GCA 90 bp TGTGGCTGGGCCCTACCTGGATGGATGCCTCTTGGCAGGCATGGGAATCATGAGTCTGGGGTTAGAGCCTaGCCAAGTGCACTGTGTATG +
Preference number: 2 (lower is better)
Translates to: CGWALPGWMPLGRHGNHESGVRA*PSALCM
Trigger: CATACACAGTGCACTTGGGCAGGCTCTAACCCCAGA...CTCATGATTCCCATGCCTGCCAAGAGGCATCCATCCAGGTAGGGCCCAGCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR-3UTR CCA 90 bp GACACACAGCTACTTCTGCCTTTCACCATGGAACCAATTGTTAAGAGAATGGGGAGCTCCCACCCACGCTaGCCAGGCAGAGCTGGCCCC +
Preference number: 2 (lower is better)
Translates to: DTQLLLPFTMEPIVKRMGSSHPR*PGRAGP
Trigger: GGGGCCAGCTCTGCCTGGCCAGCGTGGGTGGGAGCT...CCCCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR-3UTR CCA 90 bp TCAAAAGGTCTGGTTCGACAAATACAGATGTGTTCTGTGCTTGGCTCCTCCCTTAGCTCCCACCCACGCTaGCCAGGCAGAGCTGGCCCC +
Preference number: 2 (lower is better)
Translates to: SKGLVRQIQMCSVLGSSLSSHPR*PGRAGP
Trigger: GGGGCCAGCTCTGCCTGGCCAGCGTGGGTGGGAGCT...AAGGGAGGAGCCAAGCACAGAACACATCTGTATTTGTCGAACCAGACCTTTTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR CCA 90 bp CTAAGTGTGGAAGCCAGGGGTTGCAGTGAGCAGCAACAGACAACTAGAGTCAGGCTAGACCAAGGGCCTTaGGAGAGAAGAGGGCCTGTC +
Preference number: 2 (lower is better)
Translates to: LSVEARGCSEQQQTTRVRLDQGP*ERRGPV
Trigger: GACAGGCCCTCTTCTCTCCCAAGGCCCTTGGTCTAG...CCTGACTCTAGTTGTCTGTTGCTGCTCACTGCAACCCCTGGCTTCCACACTTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR CAA 90 bp CCCAAACATGGCCCTTCAGTCCCCAGTCCTTATCATGTTGAGGGCTaGCTGCATAGGCCAGTGTGGTGCAGAAGAACAGGCAGCACTTTC +
Preference number: 2 (lower is better)
Translates to: PKHGPSVPSPYHVEG*LHRPVWCRRTGSTF
Trigger: GAAAGTGCTGCCTGTTCTTCTGCACCACACTGGCCTATGCAGCAAGCCCTCAACATGATAAGGACTGGGGACTGAAGGGCCATGTTTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR CAA 90 bp TGTACACCCCCAAACATGGCCCTTCAGTCCCCAGTCCTTATCATGTaGAGGGCTTGCTGCATAGGCCAGTGTGGTGCAGAAGAACAGGCA +
Preference number: 2 (lower is better)
Translates to: CTPPNMALQSPVLIM*RACCIGQCGAEEQA
Trigger: TGCCTGTTCTTCTGCACCACACTGGCCTATGCAGCAAGCCCTCAACATGATAAGGACTGGGGACTGAAGGGCCATGTTTGGGGGTGTACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR TCA 90 bp CTCAACAGCATTCAGGCTGACTCAGTGCATGGAGGTGTTTGTTACAGCCAGCATGGAGGTCCCTCATTCTaGTCCTGGGCACCATGGTGG +
Preference number: 2 (lower is better)
Translates to: LNSIQADSVHGGVCYSQHGGPSF*SWAPWW
Trigger: CCACCATGGTGCCCAGGATCAGAATGAGGGACCTCC...ATGCTGGCTGTAACAAACACCTCCATGCACTGAGTCAGCCTGAATGCTGTTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR GCA 90 bp GCCCCAATCCCCATACCCTGCACTAGTGTAACTTACACATTGAGGATCAGAAAAGAGAGGCCACCCCGGTaGTGCCGTTCCAAGGAGCCA +
Preference number: 2 (lower is better)
Translates to: APIPIPCTSVTYTLRIRKERPPR*CRSKEP
Trigger: TGGCTCCTTGGAACGGCAGCACCGGGGTGGCCTCTC...TTTTCTGATCCTCAATGTGTAAGTTACACTAGTGCAGGGTATGGGGATTGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR CCA 90 bp GCCCCAATCCCCATACCCTGCACTAGTGTAACTTACACATTGAGGATCAGAAAAGCCTGGGGCAAGCTTTaGCTTCCCTGGGGTGGTGGG +
Preference number: 2 (lower is better)
Translates to: APIPIPCTSVTYTLRIRKAWGKL*LPWGGG
Trigger: CCCACCACCCCAGGGAAGCCAAAGCTTGCCCCAGGC...TTTTCTGATCCTCAATGTGTAAGTTACACTAGTGCAGGGTATGGGGATTGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR CAA 90 bp CCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCCTCTaGGCAGGCATGGGAATCATGAGATTGTGTCCATCAAAAGAGAAA +
Preference number: 2 (lower is better)
Translates to: PDLRAVAGPYLDGCL*AGMGIMRLCPSKEK
Trigger: TTTCTCTTTTGATGGACACAATCTCATGATTCCCATGCCTGCCAAGAGGCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR CAA 90 bp CGGTGCTGCCGTTCCAAGGAGCCAGAAGACTTTTGGTCTATGTCATaGCCACTTAGGAAGGGTGGAGAACAGGAACTGACTTGCCAGGCA +
Preference number: 2 (lower is better)
Translates to: RCCRSKEPEDFWSMS*PLRKGGEQELTCQA
Trigger: TGCCTGGCAAGTCAGTTCCTGTTCTCCACCCTTCCTAAGTGGCAATGACATAGACCAAAAGTCTTCTGGCTCCTTGGAACGGCAGCACCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR CAA 90 bp GGGAGGTCTGTCCCTTGTGAGGTGCATAAACTGGGCCTACAAGGGTaGGATGACAGGTGTATGGGAGAAGTCACAAGACTTGGAAGTCTG +
Preference number: 2 (lower is better)
Translates to: GRSVPCEVHKLGLQG*DDRCMGEVTRLGSL
Trigger: CAGACTTCCAAGTCTTGTGACTTCTCCCATACACCTGTCATCCAACCCTTGTAGGCCCAGTTTATGCACCTCACAAGGGACAGACCTCCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR TCA 90 bp GACACACAGCTACTTCTGCCTTTCACCATGGAACCAATTGTTAAGAGAATGGGGGGAGGTCCCTCATTCTaGTCCTGGGCACCATGGTGG +
Preference number: 2 (lower is better)
Translates to: DTQLLLPFTMEPIVKRMGGGPSF*SWAPWW
Trigger: CCACCATGGTGCCCAGGATCAGAATGAGGGACCTCC...CCCCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTC
52% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR-3UTR CCA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCATTTCAGACAGAATATaGGCTGCAATTCGTTCTAAG +
Preference number: 2 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCISDRI*AAIRSK
Trigger: CTTAGAACGAATTGCAGCCCATATTCTGTCTGAAAT...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR-3UTR TCA 90 bp GACACACAGCTACTTCTGCCTTTCACCATGGAACCAATTGTTAAGAGAATGGGGGGCGTCCCTGTGGATTaGGAGGGAGTAAGCTCTGCT +
Preference number: 2 (lower is better)
Translates to: DTQLLLPFTMEPIVKRMGGVPVD*EGVSSA
Trigger: AGCAGAGCTTACTCCCTCTCAATCCACAGGGACGCC...CCCCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTC
51% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR-3UTR CCA 90 bp GACACACAGCTACTTCTGCCTTTCACCATGGAACCAATTGTTAAGAGAATGGGGCTAGACCAAGGGCCTTaGGAGAGAAGAGGGCCTGTC +
Preference number: 2 (lower is better)
Translates to: DTQLLLPFTMEPIVKRMGLDQGP*ERRGPV
Trigger: GACAGGCCCTCTTCTCTCCCAAGGCCCTTGGTCTAG...CCCCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR-3UTR GCA 90 bp CAAGTAGCAACTGCCCCAATCCCCATACCCTGCACTAGTGTAACTTACACATTGCATAGGCCAGTGTGGTaGAGAAGAACAGGCAGCACT +
Preference number: 2 (lower is better)
Translates to: QVATAPIPIPCTSVTYTLHRPVW*RRTGST
Trigger: AGTGCTGCCTGTTCTTCTGCACCACACTGGCCTATG...CAATGTGTAAGTTACACTAGTGCAGGGTATGGGGATTGGGGCAGTTGCTACTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR CCA 90 bp CAAGTAGCAACTGCCCCAATCCCCATACCCTGCACTAGTGTAACTTACACATTGTGGGCCTACAAGGGTTaGATGACAGGTGTATGGGAG +
Preference number: 2 (lower is better)
Translates to: QVATAPIPIPCTSVTYTLWAYKG*MTGVWE
Trigger: CTCCCATACACCTGTCATCCAACCCTTGTAGGCCCA...CAATGTGTAAGTTACACTAGTGCAGGGTATGGGGATTGGGGCAGTTGCTACTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR TCA 90 bp TCACACATCTGTCAAAAGGTCTGGTTCGACAAATACAGATGTGTTCTGTGCTTGGGCGTCCCTGTGGATTaGGAGGGAGTAAGCTCTGCT +
Preference number: 2 (lower is better)
Translates to: SHICQKVWFDKYRCVLCLGVPVD*EGVSSA
Trigger: AGCAGAGCTTACTCCCTCTCAATCCACAGGGACGCC...CAAGCACAGAACACATCTGTATTTGTCGAACCAGACCTTTTGACAGATGTGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR GCA 90 bp GACACACAGCTACTTCTGCCTTTCACCATGGAACCAATTGTTAAGAGAATGGGGTCTGGGGTTAGAGCCTaGCCAAGTGCACTGTGTATG +
Preference number: 2 (lower is better)
Translates to: DTQLLLPFTMEPIVKRMGSGVRA*PSALCM
Trigger: CATACACAGTGCACTTGGGCAGGCTCTAACCCCAGA...CCCCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR-3UTR CCA 90 bp CTTCAATTTCTGTTAATTCCCCCAAAACCACCCTGGGAAGTGACACACTCAAAACTAGACCAAGGGCCTTaGGAGAGAAGAGGGCCTGTC +
Preference number: 2 (lower is better)
Translates to: LQFLLIPPKPPWEVTHSKLDQGP*ERRGPV
Trigger: GACAGGCCCTCTTCTCTCCCAAGGCCCTTGGTCTAG...TTTTGAGTGTGTCACTTCCCAGGGTGGTTTTGGGGGAATTAACAGAAATTGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000065169.12
ENSMUST00000177851.9
3UTR-3UTR CCA 90 bp TCAAAAGGTCTGGTTCGACAAATACAGATGTGTTCTGTGCTTGGCTCCTCCCTTCAACTAGAGTCAGGGTaGTACCTGCCATCTCTGGTG +
Preference number: 2 (lower is better)
Translates to: SKGLVRQIQMCSVLGSSLQLESG*YLPSLV
Trigger: CACCAGAGATGGCAGGTACCACCCTGACTCTAGTTG...AAGGGAGGAGCCAAGCACAGAACACATCTGTATTTGTCGAACCAGACCTTTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR CCA 90 bp GAAACCAGGGTTGGATGGGGAAACGACGGCGACCAATCACAAGAGCAGAAGGCCTTCTGCCTTTCACCATaGAACCAATTGTTAAGAGAA +
Preference number: 2 (lower is better)
Translates to: ETRVGWGNDGDQSQEQKAFCLSP*NQLLRE
Trigger: TTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAA...GGCCTTCTGCTCTTGTGATTGGTCGCCGTCGTTTCCCCATCCAACCCTGGTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR-3UTR CCA 90 bp CAAGTAGCAACTGCCCCAATCCCCATACCCTGCACTAGTGTAACTTACACATTGGATGTGTTCTGTGCTTaGCTCCTCCCTTCAAACCTG +
Preference number: 2 (lower is better)
Translates to: QVATAPIPIPCTSVTYTLDVFCA*LLPSNL
Trigger: CAGGTTTGAAGGGAGGAGCCAAGCACAGAACACATC...CAATGTGTAAGTTACACTAGTGCAGGGTATGGGGATTGGGGCAGTTGCTACTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR GCA 90 bp CTCAACAGCATTCAGGCTGACTCAGTGCATGGAGGTGTTTGTTACAGCCAGCATGAGCCACTGATGTGTTaGCTCTGGGAAATCAATGAA +
Preference number: 2 (lower is better)
Translates to: LNSIQADSVHGGVCYSQHEPLMC*LWEINE
Trigger: TTCATTGATTTCCCAGAGGCAACACATCAGTGGCTC...ATGCTGGCTGTAACAAACACCTCCATGCACTGAGTCAGCCTGAATGCTGTTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR GCA 90 bp TACAGCCAGCATTTACAATCCTTACTACTGCCTGGGGCAAGCTTTGGCTTCCCTTACAGATGTGTTCTGTaGTTGGCTCCTCCCTTCAAA +
Preference number: 2 (lower is better)
Translates to: YSQHLQSLLLPGASFGFPYRCVL*LAPPFK
Trigger: TTTGAAGGGAGGAGCCAAGCACAGAACACATCTGTA...AGGGAAGCCAAAGCTTGCCCCAGGCAGTAGTAAGGATTGTAAATGCTGGCTGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR TCA 90 bp AAACTTCAATTTCTGTTAATTCCCCCAAAACCACCCTGGGAAGTGACACACTCAACCTATAGATGGCCATaGAGAGGCAGAGACTGGGGA +
Preference number: 2 (lower is better)
Translates to: KLQFLLIPPKPPWEVTHSTYRWP*RGRDWG
Trigger: TCCCCAGTCTCTGCCTCTTCATGGCCATCTATAGGT...TGAGTGTGTCACTTCCCAGGGTGGTTTTGGGGGAATTAACAGAAATTGAAGTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000065169.12
ENSMUST00000177851.9
3UTR-3UTR CCA 90 bp GACACACAGCTACTTCTGCCTTTCACCATGGAACCAATTGTTAAGAGAATGGGGAAAGAGAAGGCCCATTaGGAGGTCCCTCATTCTGAT +
Preference number: 2 (lower is better)
Translates to: DTQLLLPFTMEPIVKRMGKEKAH*EVPHSD
Trigger: ATCAGAATGAGGGACCTCCCAATGGGCCTTCTCTTT...CCCCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR-3UTR CCA 90 bp GCCAGGCACAAAAATACTCAAGGACTAAGAAATGCTTGCATATATTCTCTCTCTCTGGCTCCAGCACAGTaGACTCAGCATCTCTCTGGA +
Preference number: 2 (lower is better)
Translates to: ARHKNTQGLRNACIYSLSLAPAQ*TQHLSG
Trigger: TCCAGAGAGATGCTGAGTCCACTGTGCTGGAGCCAG...AGAGAGAGAATATATGCAAGCATTTCTTAGTCCTTGAGTATTTTTGTGCCTGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR CCA 90 bp ATGGTGTTACCTGTGACCTTGATGACCAGAGCCACTGATGTGTTGCCTCTGGGACAATTGTTAAGAGAATaGGGGGAGAAGGAAACAAAA +
Preference number: 2 (lower is better)
Translates to: MVLPVTLMTRATDVLPLGQLLRE*GEKETK
Trigger: TTTTGTTTCCTTCTCCCCCCATTCTCTTAACAATTG...TCCCAGAGGCAACACATCAGTGGCTCTGGTCATCAAGGTCACAGGTAACACCAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR CCA 90 bp TACAGCCAGCATTTACAATCCTTACTACTGCCTGGGGCAAGCTTTGGCTTCCCTTTCTGCCTTTCACCATaGAACCAATTGTTAAGAGAA +
Preference number: 2 (lower is better)
Translates to: YSQHLQSLLLPGASFGFPFCLSP*NQLLRE
Trigger: TTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAA...AGGGAAGCCAAAGCTTGCCCCAGGCAGTAGTAAGGATTGTAAATGCTGGCTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR CCA 90 bp CTCAACAGCATTCAGGCTGACTCAGTGCATGGAGGTGTTTGTTACAGCCAGCATATCTGTCAAAAGGTCTaGTTCGACAAATACAGATGT +
Preference number: 2 (lower is better)
Translates to: LNSIQADSVHGGVCYSQHICQKV*FDKYRC
Trigger: ACATCTGTATTTGTCGAACCAGACCTTTTGACAGAT...ATGCTGGCTGTAACAAACACCTCCATGCACTGAGTCAGCCTGAATGCTGTTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR GCA 90 bp CTCAACAGCATTCAGGCTGACTCAGTGCATGGAGGTGTTTGTTACAGCCAGCATTCAAGGACTAAGAAATaGTTGCATATATTCTCTCTC +
Preference number: 2 (lower is better)
Translates to: LNSIQADSVHGGVCYSQHSRTKK*LHIFSL
Trigger: GAGAGAGAATATATGCAAGCATTTCTTAGTCCTTGA...ATGCTGGCTGTAACAAACACCTCCATGCACTGAGTCAGCCTGAATGCTGTTGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR CCA 90 bp CAAGTAGCAACTGCCCCAATCCCCATACCCTGCACTAGTGTAACTTACACATTGAAACTGACCACTTTTTaGAAACAATCCAAGGTCTTC +
Preference number: 2 (lower is better)
Translates to: QVATAPIPIPCTSVTYTLKLTTF*KQSKVF
Trigger: GAAGACCTTGGATTGTTTCCAAAAAGTGGTCAGTTT...CAATGTGTAAGTTACACTAGTGCAGGGTATGGGGATTGGGGCAGTTGCTACTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR CCA 90 bp GCCAGGCACAAAAATACTCAAGGACTAAGAAATGCTTGCATATATTCTCTCTCTAAAGAGAAGGCCCATTaGGAGGTCCCTCATTCTGAT +
Preference number: 2 (lower is better)
Translates to: ARHKNTQGLRNACIYSLSKEKAH*EVPHSD
Trigger: ATCAGAATGAGGGACCTCCCAATGGGCCTTCTCTTT...AGAGAGAGAATATATGCAAGCATTTCTTAGTCCTTGAGTATTTTTGTGCCTGGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR CCA 90 bp TCACACATCTGTCAAAAGGTCTGGTTCGACAAATACAGATGTGTTCTGTGCTTGGAGCCAGAAGACTTTTaGTCTATGTCATTGCCACTT +
Preference number: 2 (lower is better)
Translates to: SHICQKVWFDKYRCVLCLEPEDF*SMSLPL
Trigger: AAGTGGCAATGACATAGACCAAAAGTCTTCTGGCTC...CAAGCACAGAACACATCTGTATTTGTCGAACCAGACCTTTTGACAGATGTGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR CCA 90 bp AAACTTCAATTTCTGTTAATTCCCCCAAAACCACCCTGGGAAGTGACACACTCATTCTGCCTTTCACCATaGAACCAATTGTTAAGAGAA +
Preference number: 2 (lower is better)
Translates to: KLQFLLIPPKPPWEVTHSFCLSP*NQLLRE
Trigger: TTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAA...TGAGTGTGTCACTTCCCAGGGTGGTTTTGGGGGAATTAACAGAAATTGAAGTTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065169.12
ENSMUST00000177851.9
3UTR GCA 72 bp AAAACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTaGCAGCCTGGCCCGGGTGTGTCACAGTGTCCAGGG +
Preference number: 3 (lower is better)
Translates to: KTKSRLNFGSPR*QPGPGVSQCPG
Trigger: CCCTGGACACTGTGACACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGTTTT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR CCA 72 bp TGTGTCACAGTGTCCAGGGTGAGCTCCCACCCACGCTaGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCT +
Preference number: 3 (lower is better)
Translates to: CVTVSRVSSHPR*PGRAGPKVRVS
Trigger: AGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCGTGGGTGGGAGCTCACCCTGGACACTGTGACACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR-3UTR CAA 90 bp AAAGAAAACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCCCTAGACCAAGGGCCTaGGGAGAGAAGAGGGCCTGT +
Preference number: 3 (lower is better)
Translates to: KENEIPAQLREPPVPAWPPRPRA*GEKRAC
Trigger: ACAGGCCCTCTTCTCTCCCAAGGCCCTTGGTCTAGG...GGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGTTTTCTTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR GCA 72 bp CGACGGCGACCAATCACAAGAGCAGAAGGCCGCCCGTaGGTGCTGGACACACAGCTACTTCTGCCTTTCACC +
Preference number: 3 (lower is better)
Translates to: RRRPITRAEGRP*VLDTQLLLPFT
Trigger: GGTGAAAGGCAGAAGTAGCTGTGTGTCCAGCACGCACGGGCGGCCTTCTGCTCTTGTGATTGGTCGCCGTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR-3UTR CAA 90 bp GGCCGCCCGTGCGTGCTGGACACACAGCTACTTCTGCCTTTCACCATGGAACCAAGGCGTCCCTGTGGATaGAGAGGGAGTAAGCTCTGC +
Preference number: 3 (lower is better)
Translates to: GRPCVLDTQLLLPFTMEPRRPCG*RGSKLC
Trigger: GCAGAGCTTACTCCCTCTCAATCCACAGGGACGCCT...TGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTCCAGCACGCACGGGCGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR TCA 72 bp CTGATCAGTGACTGCATAGGAATGAGGACTTCTGGCTaGGAGGCCACCCCGGTGCTGCCGTTCCAAGGAGCC +
Preference number: 3 (lower is better)
Translates to: LISDCIGMRTSG*EATPVLPFQGA
Trigger: GGCTCCTTGGAACGGCAGCACCGGGGTGGCCTCTCAGCCAGAAGTCCTCATTCCTATGCAGTCACTGATCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR GCA 72 bp GGCGACCAATCACAAGAGCAGAAGGCCGCCCGTGCGTaGTGGACACACAGCTACTTCTGCCTTTCACCATGG +
Preference number: 3 (lower is better)
Translates to: GDQSQEQKAARA*WTHSYFCLSPW
Trigger: CCATGGTGAAAGGCAGAAGTAGCTGTGTGTCCAGCACGCACGGGCGGCCTTCTGCTCTTGTGATTGGTCGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR CCA 72 bp GTAAGCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTaGGCCCTACCTGGATGGATGCCTCTTGGCAGGCAT +
Preference number: 3 (lower is better)
Translates to: VSSADSRPKGCG*ALPGWMPLGRH
Trigger: ATGCCTGCCAAGAGGCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGCTTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR CCA 72 bp ATCCTTACTACTGCCTGGGGCAAGCTTTGGCTTCCCTaGGGTGGTGGGGAAGACCGTGATCAGGTCTGGAGG +
Preference number: 3 (lower is better)
Translates to: ILTTAWGKLWLP*GGGEDRDQVWR
Trigger: CCTCCAGACCTGATCACGGTCTTCCCCACCACCCCAGGGAAGCCAAAGCTTGCCCCAGGCAGTAGTAAGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR CAA 90 bp AGCAACCAGCTCTGGCTCCAGCACAGTGGACTCAGCATCTCTCTGGAGCCTCTACCTAGACCAAGGGCCTaGGGAGAGAAGAGGGCCTGT +
Preference number: 3 (lower is better)
Translates to: SNQLWLQHSGLSISLEPLPRPRA*GEKRAC
Trigger: ACAGGCCCTCTTCTCTCCCAAGGCCCTTGGTCTAGG...TAGAGGCTCCAGAGAGATGCTGAGTCCACTGTGCTGGAGCCAGAGCTGGTTGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR TCA 72 bp AAGGAAAGAGAAGGCCCATTGGGAGGTCCCTCATTCTaGTCCTGGGCACCATGGTGGCACACTCTCCTGGCC +
Preference number: 3 (lower is better)
Translates to: KEREGPLGGPSF*SWAPWWHTLLA
Trigger: GGCCAGGAGAGTGTGCCACCATGGTGCCCAGGATCAGAATGAGGGACCTCCCAATGGGCCTTCTCTTTCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR TCA 72 bp CAAGCTTTGGCTTCCCTGGGGTGGTGGGGAAGACCGTaGTCAGGTCTGGAGGCTGTTCATAGGACCACTGTC +
Preference number: 3 (lower is better)
Translates to: QALASLGWWGRP*SGLEAVHRTTV
Trigger: GACAGTGGTCCTATGAACAGCCTCCAGACCTGATCACGGTCTTCCCCACCACCCCAGGGAAGCCAAAGCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR GCA 72 bp CTGGTGCCACTCCGAGCATCCTCTGGGGTTAGAGCCTaGCCAAGTGCACTGTGTATGACAGTGACTCTGGGT +
Preference number: 3 (lower is better)
Translates to: LVPLRASSGVRA*PSALCMTVTLG
Trigger: ACCCAGAGTCACTGTCATACACAGTGCACTTGGGCAGGCTCTAACCCCAGAGGATGCTCGGAGTGGCACCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR CCA 72 bp CTTCCCTGGGGTGGTGGGGAAGACCGTGATCAGGTCTaGAGGCTGTTCATAGGACCACTGTCCCAACAACCA +
Preference number: 3 (lower is better)
Translates to: LPWGGGEDRDQV*RLFIGPLSQQP
Trigger: TGGTTGTTGGGACAGTGGTCCTATGAACAGCCTCCAGACCTGATCACGGTCTTCCCCACCACCCCAGGGAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR CAA 90 bp GAAACCAGGGTTGGATGGGGAAACGACGGCGACCAATCACAAGAGCAGAAGGCCCTGGATGGATGCCTCTaGGCAGGCATGGGAATCATG +
Preference number: 3 (lower is better)
Translates to: ETRVGWGNDGDQSQEQKALDGCL*AGMGIM
Trigger: CATGATTCCCATGCCTGCCAAGAGGCATCCATCCAG...GGCCTTCTGCTCTTGTGATTGGTCGCCGTCGTTTCCCCATCCAACCCTGGTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR GCA 72 bp GACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATaGCTCTTGGCAGGCATGGGAATCATGAGATTGTGT +
Preference number: 3 (lower is better)
Translates to: DLRAVAGPYLDG*LLAGMGIMRLC
Trigger: ACACAATCTCATGATTCCCATGCCTGCCAAGAGGCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR CCA 72 bp GTTGCAGTGAGCAGCAACAGACAACTAGAGTCAGGGTaGTACCTGCCATCTCTGGTGCCACTCCGAGCATCC +
Preference number: 3 (lower is better)
Translates to: VAVSSNRQLESG*YLPSLVPLRAS
Trigger: GGATGCTCGGAGTGGCACCAGAGATGGCAGGTACCACCCTGACTCTAGTTGTCTGTTGCTGCTCACTGCAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR CCA 72 bp TCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATaGATGCCTCTTGGCAGGCATGGGAATCATGAGATT +
Preference number: 3 (lower is better)
Translates to: SRPKGCGWALPG*MPLGRHGNHEI
Trigger: AATCTCATGATTCCCATGCCTGCCAAGAGGCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR CCA 72 bp GACCAATCACAAGAGCAGAAGGCCGCCCGTGCGTGCTaGACACACAGCTACTTCTGCCTTTCACCATGGAAC +
Preference number: 3 (lower is better)
Translates to: DQSQEQKAARAC*THSYFCLSPWN
Trigger: GTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTCCAGCACGCACGGGCGGCCTTCTGCTCTTGTGATTGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR TCA 72 bp GAAGTAGACTGGGCCCTTTCAGGCGTCCCTGTGGATTaGGAGGGAGTAAGCTCTGCTGACTCCAGACCTAAG +
Preference number: 3 (lower is better)
Translates to: EVDWALSGVPVD*EGVSSADSRPK
Trigger: CTTAGGTCTGGAGTCAGCAGAGCTTACTCCCTCTCAATCCACAGGGACGCCTGAAAGGGCCCAGTCTACTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR GCA 72 bp AATGAGCCTTTATTAGGAGGAGGCAGGGGGCGTGTCTaGAGAGGGCGGTGGTCCGCAGAACAAGGGTTTAAA +
Preference number: 3 (lower is better)
Translates to: NEPLLGGGRGRV*RGRWSAEQGFK
Trigger: TTTAAACCCTTGTTCTGCGGACCACCGCCCTCTGCAGACACGCCCCCTGCCTCCTCCTAATAAAGGCTCATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR CCA 72 bp AGCCAGGGAGGTCTGTCCCTTGTGAGGTGCATAAACTaGGCCTACAAGGGTTGGATGACAGGTGTATGGGAG +
Preference number: 3 (lower is better)
Translates to: SQGGLSLVRCIN*AYKGWMTGVWE
Trigger: CTCCCATACACCTGTCATCCAACCCTTGTAGGCCCAGTTTATGCACCTCACAAGGGACAGACCTCCCTGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR GCA 72 bp GGGCTGCAATTCGTTCTAAGTGTGGAAGCCAGGGGTTaGAGTGAGCAGCAACAGACAACTAGAGTCAGGGTG +
Preference number: 3 (lower is better)
Translates to: GLQFVLSVEARG*SEQQQTTRVRV
Trigger: CACCCTGACTCTAGTTGTCTGTTGCTGCTCACTGCAACCCCTGGCTTCCACACTTAGAACGAATTGCAGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR CCA 72 bp CCCCGGTGCTGCCGTTCCAAGGAGCCAGAAGACTTTTaGTCTATGTCATTGCCACTTAGGAAGGGTGGAGAA +
Preference number: 3 (lower is better)
Translates to: PRCCRSKEPEDF*SMSLPLRKGGE
Trigger: TTCTCCACCCTTCCTAAGTGGCAATGACATAGACCAAAAGTCTTCTGGCTCCTTGGAACGGCAGCACCGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR CAA 90 bp CTCAACAGCATTCAGGCTGACTCAGTGCATGGAGGTGTTTGTTACAGCCAGCATAGGCGTCCCTGTGGATaGAGAGGGAGTAAGCTCTGC +
Preference number: 3 (lower is better)
Translates to: LNSIQADSVHGGVCYSQHRRPCG*RGSKLC
Trigger: GCAGAGCTTACTCCCTCTCAATCCACAGGGACGCCT...ATGCTGGCTGTAACAAACACCTCCATGCACTGAGTCAGCCTGAATGCTGTTGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR GCA 72 bp AAGGCCGCCCGTGCGTGCTGGACACACAGCTACTTCTaGCTTTCACCATGGAACCAATTGTTAAGAGAATGG +
Preference number: 3 (lower is better)
Translates to: KAARACWTHSYF*LSPWNQLLREW
Trigger: CCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTCCAGCACGCACGGGCGGCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR GCA 72 bp GTGTTTGTTACAGCCAGCATTTACAATCCTTACTACTaGCTGGGGCAAGCTTTGGCTTCCCTGGGGTGGTGG +
Preference number: 3 (lower is better)
Translates to: VFVTASIYNPYY*LGQALASLGWW
Trigger: CCACCACCCCAGGGAAGCCAAAGCTTGCCCCAGGCAGTAGTAAGGATTGTAAATGCTGGCTGTAACAAACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR CCA 72 bp CCTAACTGTACTGTGTCAAGGGAAACCAGGGTTGGATaGGGAAACGACGGCGACCAATCACAAGAGCAGAAG +
Preference number: 3 (lower is better)
Translates to: PNCTVSRETRVG*GNDGDQSQEQK
Trigger: CTTCTGCTCTTGTGATTGGTCGCCGTCGTTTCCCCATCCAACCCTGGTTTCCCTTGACACAGTACAGTTAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR CCA 72 bp TTGTTACAGCCAGCATTTACAATCCTTACTACTGCCTaGGGCAAGCTTTGGCTTCCCTGGGGTGGTGGGGAA +
Preference number: 3 (lower is better)
Translates to: LLQPAFTILTTA*GKLWLPWGGGE
Trigger: TTCCCCACCACCCCAGGGAAGCCAAAGCTTGCCCCAGGCAGTAGTAAGGATTGTAAATGCTGGCTGTAACAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR TCA 72 bp ATGGAGGATTTCCACACAGGTGAGCATGGAGTTAAATaGGCCTTTATTAGGAGGAGGCAGGGGGCGTGTCTG +
Preference number: 3 (lower is better)
Translates to: MEDFHTGEHGVK*AFIRRRQGACL
Trigger: CAGACACGCCCCCTGCCTCCTCCTAATAAAGGCTCATTTAACTCCATGCTCACCTGTGTGGAAATCCTCCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065169.12
ENSMUST00000177851.9
3UTR-3UTR CAA 90 bp CTTCAATTTCTGTTAATTCCCCCAAAACCACCCTGGGAAGTGACACACTCAAAACCTAGACCAAGGGCCTaGGGAGAGAAGAGGGCCTGT +
Preference number: 3 (lower is better)
Translates to: LQFLLIPPKPPWEVTHSKPRPRA*GEKRAC
Trigger: ACAGGCCCTCTTCTCTCCCAAGGCCCTTGGTCTAGG...TTTTGAGTGTGTCACTTCCCAGGGTGGTTTTGGGGGAATTAACAGAAATTGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000065169.12
ENSMUST00000177851.9
3UTR TCA 72 bp ACCAGAGCCACTGATGTGTTGCCTCTGGGAAATCAATaGAGTAGGAACCATCACCTCCATCTTCACCTCCCA +
Preference number: 3 (lower is better)
Translates to: TRATDVLPLGNQ*SRNHHLHLHLP
Trigger: TGGGAGGTGAAGATGGAGGTGATGGTTCCTACTTCATTGATTTCCCAGAGGCAACACATCAGTGGCTCTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR TCA 72 bp CCTCAACTCAAGTGGAGGTCTTCATCCAGTTCTAGGTaGCATGGTCTGATCAGTGACTGCATAGGAATGAGG +
Preference number: 3 (lower is better)
Translates to: PQLKWRSSSSSR*HGLISDCIGMR
Trigger: CCTCATTCCTATGCAGTCACTGATCAGACCATGTCACCTAGAACTGGATGAAGACCTCCACTTGAGTTGAGG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR GCA 72 bp CAAAAGGTCTGGTTCGACAAATACAGATGTGTTCTGTaGTTGGCTCCTCCCTTCAAACCTGTCCCTAGCAGT +
Preference number: 3 (lower is better)
Translates to: QKVWFDKYRCVL*LAPPFKPVPSS
Trigger: ACTGCTAGGGACAGGTTTGAAGGGAGGAGCCAAGCACAGAACACATCTGTATTTGTCGAACCAGACCTTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR CCA 72 bp ATAAACTGGGCCTACAAGGGTTGGATGACAGGTGTATaGGAGAAGTCACAAGACTTGGAAGTCTGGATGCAC +
Preference number: 3 (lower is better)
Translates to: INWAYKGWMTGV*EKSQDLEVWMH
Trigger: GTGCATCCAGACTTCCAAGTCTTGTGACTTCTCCCATACACCTGTCATCCAACCCTTGTAGGCCCAGTTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR CCA 72 bp AGGTCTGGTTCGACAAATACAGATGTGTTCTGTGCTTaGCTCCTCCCTTCAAACCTGTCCCTAGCAGTTAGT +
Preference number: 3 (lower is better)
Translates to: RSGSTNTDVFCA*LLPSNLSLAVS
Trigger: ACTAACTGCTAGGGACAGGTTTGAAGGGAGGAGCCAAGCACAGAACACATCTGTATTTGTCGAACCAGACCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR TCA 72 bp CCCAATAAAACCCAAACTTCAACCTATAGATGGCCATaGAGAGGCAGAGACTGGGGAGCTAAGATGGGAAAA +
Preference number: 3 (lower is better)
Translates to: PNKTQTSTYRWP*RGRDWGAKMGK
Trigger: TTTTCCCATCTTAGCTCCCCAGTCTCTGCCTCTTCATGGCCATCTATAGGTTGAAGTTTGGGTTTTATTGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR TCA 72 bp TGTCATTGCCACTTAGGAAGGGTGGAGAACAGGAACTaGCTTGCCAGGCACAAAAATACTCAAGGACTAAGA +
Preference number: 3 (lower is better)
Translates to: CHCHLGRVENRN*LARHKNTQGLR
Trigger: TCTTAGTCCTTGAGTATTTTTGTGCCTGGCAAGTCAGTTCCTGTTCTCCACCCTTCCTAAGTGGCAATGACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR GCA 72 bp TTGCCACTTAGGAAGGGTGGAGAACAGGAACTGACTTaGCAGGCACAAAAATACTCAAGGACTAAGAAATGC +
Preference number: 3 (lower is better)
Translates to: LPLRKGGEQELT*QAQKYSRTKKC
Trigger: GCATTTCTTAGTCCTTGAGTATTTTTGTGCCTGGCAAGTCAGTTCCTGTTCTCCACCCTTCCTAAGTGGCAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR CCA 72 bp ACAACCAAACCTAGGTCACACATCTGTCAAAAGGTCTaGTTCGACAAATACAGATGTGTTCTGTGCTTGGCT +
Preference number: 3 (lower is better)
Translates to: TTKPRSHICQKV*FDKYRCVLCLA
Trigger: AGCCAAGCACAGAACACATCTGTATTTGTCGAACCAGACCTTTTGACAGATGTGTGACCTAGGTTTGGTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR-3UTR CAA 90 bp CTTCAATTTCTGTTAATTCCCCCAAAACCACCCTGGGAAGTGACACACTCAAAAATGGGAATCATGAGATaGTGTCCATCAAAAGAGAAA +
Preference number: 3 (lower is better)
Translates to: LQFLLIPPKPPWEVTHSKMGIMR*CPSKEK
Trigger: TTTCTCTTTTGATGGACACAATCTCATGATTCCCAT...TTTTGAGTGTGTCACTTCCCAGGGTGGTTTTGGGGGAATTAACAGAAATTGAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000065169.12
ENSMUST00000177851.9
CDS-3UTR GCA 90 bp ACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGTGGAGGCGGTGCCCTTaGCGGTGCCCACGACTCTCT +
Preference number: 4 (lower is better)
Translates to: TKSRLNFGSPRCQPGPGVWRRCP*RCPRLS
Trigger: AGAGAGTCGTGGGCACCGGCAAGGGCACCGCCTCCA...CACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GCTCCCACCCACGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGCTGCCAAGCTTGGGCTaGCGAAGGCGAGGGTCCCAC +
Preference number: 4 (lower is better)
Translates to: APTHAGQAELAPRSEFLLLPSLG*RRRGSH
Trigger: GTGGGACCCTCGCCTTCGTCAGCCCAAGCTTGGCAG...CAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCGTGGGTGGGAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp ACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGGTACCCACACCCTGCTaGAGCAGGCGCTGCTCCATC +
Preference number: 4 (lower is better)
Translates to: TKSRLNFGSPRCQPGPGVVPTPC*SRRCSI
Trigger: GATGGAGCAGCGCCTGCTGCAGCAGGGTGTGGGTAC...CACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGTCACAGTGTCCATGGAGGCGGTGCCCTTaGCGGTGCCCACGACTCTCT +
Preference number: 4 (lower is better)
Translates to: LNFGSPRCQPGPGVSQCPWRRCP*RCPRLS
Trigger: AGAGAGTCGTGGGCACCGGCAAGGGCACCGCCTCCA...TGGACACTGTGACACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGTCACAGTGTCCACTCGGGACAGCTGGCTaGAAGCGGCAAGGGCTCCAG +
Preference number: 4 (lower is better)
Translates to: LNFGSPRCQPGPGVSQCPLGTAG*KRQGLQ
Trigger: CTGGAGCCCTTGCCGCTTCCAGCCAGCTGTCCCGAG...TGGACACTGTGACACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR TCA 90 bp GCTCCCACCCACGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGACACGGGCCTCTCCTaGGCGGAACGCCAACTTACG +
Preference number: 4 (lower is better)
Translates to: APTHAGQAELAPRSEFLLDTGLS*AERQLT
Trigger: CGTAAGTTGGCGTTCCGCTCAGGAGAGGCCCGTGTC...CAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCGTGGGTGGGAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp ACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGTGCTGCAGCAGGCGCTaGTCCATCTCCTGCTCTTGC +
Preference number: 4 (lower is better)
Translates to: TKSRLNFGSPRCQPGPGVCCSRR*SISCSC
Trigger: GCAAGAGCAGGAGATGGAGCAGCGCCTGCTGCAGCA...CACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp ACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGGCGTCTTTTTCCAGTTaGAGGCGGTGCCCTTGCCGG +
Preference number: 4 (lower is better)
Translates to: TKSRLNFGSPRCQPGPGVASFSS*RRCPCR
Trigger: CCGGCAAGGGCACCGCCTCCAACTGGAAAAAGACGC...CACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GCTCCCACCCACGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGCTGCAGGCTCAGCCTTaGTGCTGGCAGTACCCACAC +
Preference number: 4 (lower is better)
Translates to: APTHAGQAELAPRSEFLLLQAQP*CWQYPH
Trigger: GTGTGGGTACTGCCAGCATCAAGGCTGAGCCTGCAG...CAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCGTGGGTGGGAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp ACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGCGAGGGTCCCACCTGTaGTCAGAGGCGTCTTTTTCC +
Preference number: 4 (lower is better)
Translates to: TKSRLNFGSPRCQPGPGVRGSHL*SEASFS
Trigger: GGAAAAAGACGCCTCTGAGCACAGGTGGGACCCTCG...CACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAACCCACCTCGGACCAGTaGTGGTGGGATGATGCTGCC +
Preference number: 4 (lower is better)
Translates to: RWPGRAGPKVRVSAGVGQPTSDQ*WWDDAA
Trigger: GGCAGCATCATCCCACCACCACTGGTCCGAGGTGGG...TTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GCTCCCACCCACGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGCGTCTTTTTCCAGTTaGAGGCGGTGCCCTTGCCGG +
Preference number: 4 (lower is better)
Translates to: APTHAGQAELAPRSEFLLASFSS*RRCPCR
Trigger: CCGGCAAGGGCACCGCCTCCAACTGGAAAAAGACGC...CAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCGTGGGTGGGAGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR CAA 72 bp GCTAGGAGGCAGTCTGTGTGTCCTAGACCAAGGGCCTaGGGAGAGAAGAGGGCCTGTCCTCGGCTGGGCCGG +
Preference number: 4 (lower is better)
Translates to: ARRQSVCPRPRA*GEKRACPRLGR
Trigger: CCGGCCCAGCCGAGGACAGGCCCTCTTCTCTCCCAAGGCCCTTGGTCTAGGACACACAGACTGCCTCCTAGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp CTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGTCACAGTGTCCACGAGTGGAGGAGGTCTaGAGTGAGGTCTTGCCAGCA +
Preference number: 4 (lower is better)
Translates to: LNFGSPRCQPGPGVSQCPRVEEV*SEVLPA
Trigger: TGCTGGCAAGACCTCACTTCAGACCTCCTCCACTCG...TGGACACTGTGACACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTACTGCCAAGCTTGGGCTaGCGAAGGCGAGGGTCCCAC +
Preference number: 4 (lower is better)
Translates to: GQAELAPRSEFLLVSGKLLPSLG*RRRGSH
Trigger: GTGGGACCCTCGCCTTCGTCAGCCCAAGCTTGGCAG...TAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp ACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGTTCAGGCGACTGGTGTaGTCCACCTTGAGTGCCTTC +
Preference number: 4 (lower is better)
Translates to: TKSRLNFGSPRCQPGPGVFRRLV*STLSAF
Trigger: GAAGGCACTCAAGGTGGAGCACACCAGTCGCCTGAA...CACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAATGCTGCAGCAGGCGCTaGTCCATCTCCTGCTCTTGC +
Preference number: 4 (lower is better)
Translates to: RWPGRAGPKVRVSAGVGQCCSRR*SISCSC
Trigger: GCAAGAGCAGGAGATGGAGCAGCGCCTGCTGCAGCA...TTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGTCACAGTGTCCACGTGGGATGTGGAGCTaGAGGCTCAGCCTTGATGCT +
Preference number: 4 (lower is better)
Translates to: LNFGSPRCQPGPGVSQCPRGMWS*RLSLDA
Trigger: AGCATCAAGGCTGAGCCTGCAGCTCCACATCCCACG...TGGACACTGTGACACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAACCTGTGGTCCCAGTTTaGCAGACACCTGCTGCCCAC +
Preference number: 4 (lower is better)
Translates to: RWPGRAGPKVRVSAGVGQPVVPV*QTPAAH
Trigger: GTGGGCAGCAGGTGTCTGCCAAACTGGGACCACAGG...TTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp AAAGAAAACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGCAGGGGGCTTGGGTaGGGGGATCTCCAGCAGTGT +
Preference number: 4 (lower is better)
Translates to: KENEIPAQLREPPVPAWPGRGLG*GDLQQC
Trigger: ACACTGCTGGAGATCCCCCCACCCAAGCCCCCTGCC...GGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGTTTTCTTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAACTCGGGACAGCTGGCTaGAAGCCTGTAGTGAGGACC +
Preference number: 4 (lower is better)
Translates to: RWPGRAGPKVRVSAGVGQLGTAG*KPVVRT
Trigger: GGTCCTCACTACAGGCTTCCAGCCAGCTGTCCCGAG...TTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GACTTCTGGCTGAGAGGCCACCCCGGTGCTGCCGTTCCAAGGAGCCAGAAGACTGAGCCTCGGGACAGCTaGCTGGAAGCGGCAAGGGCT +
Preference number: 4 (lower is better)
Translates to: DFWLRGHPGAAVPRSQKTEPRDS*LEAARA
Trigger: AGCCCTTGCCGCTTCCAGCCAGCTGTCCCGAGGCTC...AGTCTTCTGGCTCCTTGGAACGGCAGCACCGGGGTGGCCTCTCAGCCAGAAGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR TCA 90 bp CGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAGGTCACAGTGCTCCCTaGGGAAGCTGTAGGCTTCTG +
Preference number: 4 (lower is better)
Translates to: RWPGRAGPKVRVSAGVGQGHSAP*GSCRLL
Trigger: CAGAAGCCTACAGCTTCCTCAGGGAGCACTGTGACC...TTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp ACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGTGGTGTGCTCCACCTTaGGTGCCTTCTTTTGGTTGG +
Preference number: 4 (lower is better)
Translates to: TKSRLNFGSPRCQPGPGVWCAPP*VPSFGW
Trigger: CCAACCAAAAGAAGGCACTCAAGGTGGAGCACACCA...CACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GGCCGCCCGTGCGTGCTGGACACACAGCTACTTCTGCCTTTCACCATGGAACCAACGAGGTGCTGTGGCTaGGCCTCGGGACAGCTGGCT +
Preference number: 4 (lower is better)
Translates to: GRPCVLDTQLLLPFTMEPTRCCG*ASGQLA
Trigger: AGCCAGCTGTCCCGAGGCTCAGCCACAGCACCTCGT...TGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTCCAGCACGCACGGGCGGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GGCCGCCCGTGCGTGCTGGACACACAGCTACTTCTGCCTTTCACCATGGAACCACTGCCAAGCTTGGGCTaGCGAAGGCGAGGGTCCCAC +
Preference number: 4 (lower is better)
Translates to: GRPCVLDTQLLLPFTMEPLPSLG*RRRGSH
Trigger: GTGGGACCCTCGCCTTCGTCAGCCCAAGCTTGGCAG...TGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTCCAGCACGCACGGGCGGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp CTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGTCACAGTGTCCACTATTTCCATGTGGCTaGTTGGGGGATGGAGCGTGG +
Preference number: 4 (lower is better)
Translates to: LNFGSPRCQPGPGVSQCPLFPCG*LGDGAW
Trigger: CCACGCTCCATCCCCCAATCAGCCACATGGAAATAG...TGGACACTGTGACACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp ACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGAGTGTCTTCTCCAGCTaGTTGCGCAGTGCTAGCTTG +
Preference number: 4 (lower is better)
Translates to: TKSRLNFGSPRCQPGPGVSVFSS*LRSASL
Trigger: CAAGCTAGCACTGCGCAAGCAGCTGGAGAAGACACT...CACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GCTCCCACCCACGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGCGCTGCTCCATCTCCTaGTCTTGCTGTAGAGCCTTC +
Preference number: 4 (lower is better)
Translates to: APTHAGQAELAPRSEFLLRCSIS*SCCRAF
Trigger: GAAGGCTCTACAGCAAGAGCAGGAGATGGAGCAGCG...CAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCGTGGGTGGGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp ACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGGACTGGCTGAAAGTGTaGAGAACACCACGAGGTGCT +
Preference number: 4 (lower is better)
Translates to: TKSRLNFGSPRCQPGPGVDWLKV*RTPRGA
Trigger: AGCACCTCGTGGTGTTCTGCACACTTTCAGCCAGTC...CACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAGCCTGCACTCGGCTCTaGCATCACCCTGCTGTCTCC +
Preference number: 4 (lower is better)
Translates to: GQAELAPRSEFLLVSGKLACTRL*HHPAVS
Trigger: GGAGACAGCAGGGTGATGCCAGAGCCGAGTGCAGGC...TAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTACAGGAGGAGGGGTGGTaGCCCCGTAGAGGAATGCTG +
Preference number: 4 (lower is better)
Translates to: GQAELAPRSEFLLVSGKLQEEGW*PRRGML
Trigger: CAGCATTCCTCTACGGGGCCACCACCCCTCCTCCTG...TAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGTCACAGTGTCCACAAGCAGACTGGTGTTaGGGACATTGGCGACACGGA +
Preference number: 4 (lower is better)
Translates to: LNFGSPRCQPGPGVSQCPQADWC*GHWRHG
Trigger: TCCGTGTCGCCAATGTCCCCAACACCAGTCTGCTTG...TGGACACTGTGACACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GCTCCCACCCACGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGTTGGGGGATGGAGCGTaGAGGAATCATGTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: APTHAGQAELAPRSEFLLLGDGA*RNHVQE
Trigger: CTCCTGGACATGATTCCTCCACGCTCCATCCCCCAA...CAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCGTGGGTGGGAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GCTCCCACCCACGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGATGATCCTCTGTCCCTaGATCTGCATGCTGGGCACT +
Preference number: 4 (lower is better)
Translates to: APTHAGQAELAPRSEFLLMILCP*ICMLGT
Trigger: AGTGCCCAGCATGCAGATTCAGGGACAGAGGATCAT...CAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCGTGGGTGGGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp CGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAGAGGCTGCAGTAGGCTaGGGGATGTTGACAAGCAGA +
Preference number: 4 (lower is better)
Translates to: RWPGRAGPKVRVSAGVGQEAAVG*GMLTSR
Trigger: TCTGCTTGTCAACATCCCTCAGCCTACTGCAGCCTC...TTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp CTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGTCACAGTGTCCAGGAGTGGAATTTGCCTaGGCAGAAGCAACTGCTGTC +
Preference number: 4 (lower is better)
Translates to: LNFGSPRCQPGPGVSQCPGVEFA*AEATAV
Trigger: GACAGCAGTTGCTTCTGCTCAGGCAAATTCCACTCC...TGGACACTGTGACACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GCTCCCACCCACGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGTGGTGTGCTCCACCTTaGGTGCCTTCTTTTGGTTGG +
Preference number: 4 (lower is better)
Translates to: APTHAGQAELAPRSEFLLWCAPP*VPSFGW
Trigger: CCAACCAAAAGAAGGCACTCAAGGTGGAGCACACCA...CAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCGTGGGTGGGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GCTCCCACCCACGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTTTGGGTGACTGGCTaGAAGTGTGCAGAACACCAC +
Preference number: 4 (lower is better)
Translates to: APTHAGQAELAPRSEFLLVWVTG*KCAEHH
Trigger: GTGGTGTTCTGCACACTTTCAGCCAGTCACCCAAAC...CAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCGTGGGTGGGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp CGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAACTATTTCCATGTGGCTaGTTGGGGGATGGAGCGTGG +
Preference number: 4 (lower is better)
Translates to: RWPGRAGPKVRVSAGVGQLFPCG*LGDGAW
Trigger: CCACGCTCCATCCCCCAATCAGCCACATGGAAATAG...TTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAATGTCACTGTGTGAAGTaGGCATGTCCACAGGCCCGT +
Preference number: 4 (lower is better)
Translates to: RWPGRAGPKVRVSAGVGQCHCVK*ACPQAR
Trigger: ACGGGCCTGTGGACATGCGCACTTCACACAGTGACA...TTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCGTCCCTGAATCTGCATaGTGGGCACTGAGGCACGGG +
Preference number: 4 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCVPESA*WALRHG
Trigger: CCCGTGCCTCAGTGCCCAGCATGCAGATTCAGGGAC...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGTCACAGTGTCCAACACGGATAAGTCCCTaGTGGATGATCCTCTGTCCC +
Preference number: 4 (lower is better)
Translates to: LNFGSPRCQPGPGVSQCPTRISP*WMILCP
Trigger: GGGACAGAGGATCATCCAGCAGGGACTTATCCGTGT...TGGACACTGTGACACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGTCACAGTGTCCAAGTGTCTTCTCCAGCTaGTTGCGCAGTGCTAGCTTG +
Preference number: 4 (lower is better)
Translates to: LNFGSPRCQPGPGVSQCPSVFSS*LRSASL
Trigger: CAAGCTAGCACTGCGCAAGCAGCTGGAGAAGACACT...TGGACACTGTGACACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GCTCCCACCCACGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGGCAGAAATCCTGCCTaGTTGTGTCTCCAGCAGGTT +
Preference number: 4 (lower is better)
Translates to: APTHAGQAELAPRSEFLLGRNPA*LCLQQV
Trigger: AACCTGCTGGAGACACAAGCAGGCAGGATTTCTGCC...CAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCGTGGGTGGGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGTCACAGTGTCCACAGTGGCAGAAATCCTaGCTGCTTGTGTCTCCAGCA +
Preference number: 4 (lower is better)
Translates to: LNFGSPRCQPGPGVSQCPQWQKS*LLVSPA
Trigger: TGCTGGAGACACAAGCAGGCAGGATTTCTGCCACTG...TGGACACTGTGACACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAACGCTGCTCCATCTCCTaGTCTTGCTGTAGAGCCTTC +
Preference number: 4 (lower is better)
Translates to: RWPGRAGPKVRVSAGVGQRCSIS*SCCRAF
Trigger: GAAGGCTCTACAGCAAGAGCAGGAGATGGAGCAGCG...TTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAGCTGAGGCTGCATTCTaGAGTTTGGGTGACTGGCTG +
Preference number: 4 (lower is better)
Translates to: RWPGRAGPKVRVSAGVGQAEAAF*SLGDWL
Trigger: CAGCCAGTCACCCAAACTGCAGAATGCAGCCTCAGC...TTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp ACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGCTTTCAAGGCTACTGTaGTCAGGCCATTCACCCTTG +
Preference number: 4 (lower is better)
Translates to: TKSRLNFGSPRCQPGPGVLSRLL*SGHSPL
Trigger: CAAGGGTGAATGGCCTGACCACAGTAGCCTTGAAAG...CACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTACCAGCAGGAATGTTCTaGGTACCCCGCACGAGTGGG +
Preference number: 4 (lower is better)
Translates to: GQAELAPRSEFLLVSGKLPAGMF*VPRTSG
Trigger: CCCACTCGTGCGGGGTACCCAGAACATTCCTGCTGG...TAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp TGTGGCTGGGCCCTACCTGGATGGATGCCTCTTGGCAGGCATGGGAATCATGAGGGCAGGGGGCTTGGGTaGGGGGATCTCCAGCAGTGT +
Preference number: 4 (lower is better)
Translates to: CGWALPGWMPLGRHGNHEGRGLG*GDLQQC
Trigger: ACACTGCTGGAGATCCCCCCACCCAAGCCCCCTGCC...CTCATGATTCCCATGCCTGCCAAGAGGCATCCATCCAGGTAGGGCCCAGCCACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCCTCGGGACAGCTGGCTaGAAGCCTGTAGTGAGGACC +
Preference number: 4 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCLGTAG*KPVVRT
Trigger: GGTCCTCACTACAGGCTTCCAGCCAGCTGTCCCGAG...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAGCGTCTTTTTCCAGTTaGAGGCGGTGCCCTTGCCGG +
Preference number: 4 (lower is better)
Translates to: GQAELAPRSEFLLVSGKLASFSS*RRCPCR
Trigger: CCGGCAAGGGCACCGCCTCCAACTGGAAAAAGACGC...TAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GCTCCCACCCACGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGTGGCTGATTGGGGGATaGAGCGTGGAGGAATCATGT +
Preference number: 4 (lower is better)
Translates to: APTHAGQAELAPRSEFLLWLIGG*SVEESC
Trigger: ACATGATTCCTCCACGCTCCATCCCCCAATCAGCCA...CAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCGTGGGTGGGAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp CGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAACCTCCTTCAGCTGCTTaGTCATCCGCTCTCGTTCTT +
Preference number: 4 (lower is better)
Translates to: RWPGRAGPKVRVSAGVGQPPSAA*SSALVL
Trigger: AAGAACGAGAGCGGATGATCAAGCAGCTGAAGGAGG...TTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp AAAGAAAACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCCGAGTGGAGGAGGTCTaGAGTGAGGTCTTGCCAGCA +
Preference number: 4 (lower is better)
Translates to: KENEIPAQLREPPVPAWPRVEEV*SEVLPA
Trigger: TGCTGGCAAGACCTCACTTCAGACCTCCTCCACTCG...GGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGTTTTCTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTACGAGTGGAGGAGGTCTaGAGTGAGGTCTTGCCAGCA +
Preference number: 4 (lower is better)
Translates to: GQAELAPRSEFLLVSGKLRVEEV*SEVLPA
Trigger: TGCTGGCAAGACCTCACTTCAGACCTCCTCCACTCG...TAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GGCCGCCCGTGCGTGCTGGACACACAGCTACTTCTGCCTTTCACCATGGAACCACTGCAGGCTCAGCCTTaGTGCTGGCAGTACCCACAC +
Preference number: 4 (lower is better)
Translates to: GRPCVLDTQLLLPFTMEPLQAQP*CWQYPH
Trigger: GTGTGGGTACTGCCAGCATCAAGGCTGAGCCTGCAG...TGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTCCAGCACGCACGGGCGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp CAGACAACTAGAGTCAGGGTGGTACCTGCCATCTCTGGTGCCACTCCGAGCATCACGAGGTGCTGTGGCTaGGCCTCGGGACAGCTGGCT +
Preference number: 4 (lower is better)
Translates to: QTTRVRVVPAISGATPSITRCCG*ASGQLA
Trigger: AGCCAGCTGTCCCGAGGCTCAGCCACAGCACCTCGT...GATGCTCGGAGTGGCACCAGAGATGGCAGGTACCACCCTGACTCTAGTTGTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAGGGTGCGCTTCTGACTaGGGGTTCGGCATGCTTCTT +
Preference number: 4 (lower is better)
Translates to: GQAELAPRSEFLLVSGKLGCASD*GFGMLL
Trigger: AAGAAGCATGCCGAACCCGCAGTCAGAAGCGCACCC...TAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GGCCGCCCGTGCGTGCTGGACACACAGCTACTTCTGCCTTTCACCATGGAACCAGTCCCTGAATCTGCATaGTGGGCACTGAGGCACGGG +
Preference number: 4 (lower is better)
Translates to: GRPCVLDTQLLLPFTMEPVPESA*WALRHG
Trigger: CCCGTGCCTCAGTGCCCAGCATGCAGATTCAGGGAC...TGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTCCAGCACGCACGGGCGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp ACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGTCCATCTCCTGCTCTTaGTGTAGAGCCTTCACAAAG +
Preference number: 4 (lower is better)
Translates to: TKSRLNFGSPRCQPGPGVSISCS*CRAFTK
Trigger: CTTTGTGAAGGCTCTACAGCAAGAGCAGGAGATGGA...CACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp TGTGGCTGGGCCCTACCTGGATGGATGCCTCTTGGCAGGCATGGGAATCATGAGGTACCCACACCCTGCTaGAGCAGGCGCTGCTCCATC +
Preference number: 4 (lower is better)
Translates to: CGWALPGWMPLGRHGNHEVPTPC*SRRCSI
Trigger: GATGGAGCAGCGCCTGCTGCAGCAGGGTGTGGGTAC...CTCATGATTCCCATGCCTGCCAAGAGGCATCCATCCAGGTAGGGCCCAGCCACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCCGTGGGATGTGGAGCTaGAGGCTCAGCCTTGATGCT +
Preference number: 4 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCRGMWS*RLSLDA
Trigger: AGCATCAAGGCTGAGCCTGCAGCTCCACATCCCACG...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAGACTGGCTGAAAGTGTaGAGAACACCACGAGGTGCT +
Preference number: 4 (lower is better)
Translates to: RWPGRAGPKVRVSAGVGQDWLKV*RTPRGA
Trigger: AGCACCTCGTGGTGTTCTGCACACTTTCAGCCAGTC...TTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CAGACAACTAGAGTCAGGGTGGTACCTGCCATCTCTGGTGCCACTCCGAGCATCTGGAGGCGGTGCCCTTaGCGGTGCCCACGACTCTCT +
Preference number: 4 (lower is better)
Translates to: QTTRVRVVPAISGATPSIWRRCP*RCPRLS
Trigger: AGAGAGTCGTGGGCACCGGCAAGGGCACCGCCTCCA...GATGCTCGGAGTGGCACCAGAGATGGCAGGTACCACCCTGACTCTAGTTGTCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp TGTGGCTGGGCCCTACCTGGATGGATGCCTCTTGGCAGGCATGGGAATCATGAGCAGGAGGAGGGGTGGTaGCCCCGTAGAGGAATGCTG +
Preference number: 4 (lower is better)
Translates to: CGWALPGWMPLGRHGNHEQEEGW*PRRGML
Trigger: CAGCATTCCTCTACGGGGCCACCACCCCTCCTCCTG...CTCATGATTCCCATGCCTGCCAAGAGGCATCCATCCAGGTAGGGCCCAGCCACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp AGCAACCAGCTCTGGCTCCAGCACAGTGGACTCAGCATCTCTCTGGAGCCTCTAGGCAGGGGGCTTGGGTaGGGGGATCTCCAGCAGTGT +
Preference number: 4 (lower is better)
Translates to: SNQLWLQHSGLSISLEPLGRGLG*GDLQQC
Trigger: ACACTGCTGGAGATCCCCCCACCCAAGCCCCCTGCC...TAGAGGCTCCAGAGAGATGCTGAGTCCACTGTGCTGGAGCCAGAGCTGGTTGCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CAGACAACTAGAGTCAGGGTGGTACCTGCCATCTCTGGTGCCACTCCGAGCATCGGCAGGGGGCTTGGGTaGGGGGATCTCCAGCAGTGT +
Preference number: 4 (lower is better)
Translates to: QTTRVRVVPAISGATPSIGRGLG*GDLQQC
Trigger: ACACTGCTGGAGATCCCCCCACCCAAGCCCCCTGCC...GATGCTCGGAGTGGCACCAGAGATGGCAGGTACCACCCTGACTCTAGTTGTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTACAAGAAGTTCATCTCTaGGGCAGGGGGCTTGGGTGG +
Preference number: 4 (lower is better)
Translates to: GQAELAPRSEFLLVSGKLQEVHL*GRGLGW
Trigger: CCACCCAAGCCCCCTGCCCCAGAGATGAACTTCTTG...TAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GACTTCTGGCTGAGAGGCCACCCCGGTGCTGCCGTTCCAAGGAGCCAGAAGACTCTTCAGCGTGGGATGTaGAGCTGCAGGCTCAGCCTT +
Preference number: 4 (lower is better)
Translates to: DFWLRGHPGAAVPRSQKTLQRGM*SCRLSL
Trigger: AAGGCTGAGCCTGCAGCTCCACATCCCACGCTGAAG...AGTCTTCTGGCTCCTTGGAACGGCAGCACCGGGGTGGCCTCTCAGCCAGAAGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR CCA 90 bp GGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTACTTCAGCGTGGGATGTaGAGCTGCAGGCTCAGCCTT +
Preference number: 4 (lower is better)
Translates to: GQAELAPRSEFLLVSGKLLQRGM*SCRLSL
Trigger: AAGGCTGAGCCTGCAGCTCCACATCCCACGCTGAAG...TAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GGCCGCCCGTGCGTGCTGGACACACAGCTACTTCTGCCTTTCACCATGGAACCACTCGGGACAGCTGGCTaGAAGCCTGTAGTGAGGACC +
Preference number: 4 (lower is better)
Translates to: GRPCVLDTQLLLPFTMEPLGTAG*KPVVRT
Trigger: GGTCCTCACTACAGGCTTCCAGCCAGCTGTCCCGAG...TGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTCCAGCACGCACGGGCGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp AAAGAAAACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGAGGAGGTCTGAAGTaGGGTCTTGCCAGCAGGAAT +
Preference number: 4 (lower is better)
Translates to: KENEIPAQLREPPVPAWPGGGLK*GLASRN
Trigger: ATTCCTGCTGGCAAGACCTCACTTCAGACCTCCTCC...GGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGTTTTCTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCGAGGCTGCAGTAGGCTaGGGGATGTTGACAAGCAGA +
Preference number: 4 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCEAAVG*GMLTSR
Trigger: TCTGCTTGTCAACATCCCTCAGCCTACTGCAGCCTC...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp CAGACAACTAGAGTCAGGGTGGTACCTGCCATCTCTGGTGCCACTCCGAGCATCGACACGGGCCTCTCCTaGGCGGAACGCCAACTTACG +
Preference number: 4 (lower is better)
Translates to: QTTRVRVVPAISGATPSIDTGLS*AERQLT
Trigger: CGTAAGTTGGCGTTCCGCTCAGGAGAGGCCCGTGTC...GATGCTCGGAGTGGCACCAGAGATGGCAGGTACCACCCTGACTCTAGTTGTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GGCCGCCCGTGCGTGCTGGACACACAGCTACTTCTGCCTTTCACCATGGAACCAGGGTGCGCTTCTGACTaGGGGTTCGGCATGCTTCTT +
Preference number: 4 (lower is better)
Translates to: GRPCVLDTQLLLPFTMEPGCASD*GFGMLL
Trigger: AAGAAGCATGCCGAACCCGCAGTCAGAAGCGCACCC...TGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTCCAGCACGCACGGGCGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp AAAGAAAACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCCGCTGCTCCATCTCCTaGTCTTGCTGTAGAGCCTTC +
Preference number: 4 (lower is better)
Translates to: KENEIPAQLREPPVPAWPRCSIS*SCCRAF
Trigger: GAAGGCTCTACAGCAAGAGCAGGAGATGGAGCAGCG...GGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGTTTTCTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCGCTGAGGCTGCATTCTaGAGTTTGGGTGACTGGCTG +
Preference number: 4 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCAEAAF*SLGDWL
Trigger: CAGCCAGTCACCCAAACTGCAGAATGCAGCCTCAGC...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp AAAGAAAACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCCTCTCTCGGAATGTCTaGCAGTCCTGCTTACCAGGG +
Preference number: 4 (lower is better)
Translates to: KENEIPAQLREPPVPAWPLSRNV*QSCLPG
Trigger: CCCTGGTAAGCAGGACTGGCAGACATTCCGAGAGAG...GGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGTTTTCTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGTGGAGGCGGTGCCCTTaGCGGTGCCCACGACTCTCT +
Preference number: 4 (lower is better)
Translates to: LAPRSEFLLVSGKLKAKRWRRCP*RCPRLS
Trigger: AGAGAGTCGTGGGCACCGGCAAGGGCACCGCCTCCA...CCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GAAACCAGGGTTGGATGGGGAAACGACGGCGACCAATCACAAGAGCAGAAGGCCGCCTGCACTCGGCTCTaGCATCACCCTGCTGTCTCC +
Preference number: 4 (lower is better)
Translates to: ETRVGWGNDGDQSQEQKAACTRL*HHPAVS
Trigger: GGAGACAGCAGGGTGATGCCAGAGCCGAGTGCAGGC...GGCCTTCTGCTCTTGTGATTGGTCGCCGTCGTTTCCCCATCCAACCCTGGTTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CAGACAACTAGAGTCAGGGTGGTACCTGCCATCTCTGGTGCCACTCCGAGCATCCCCACCTCGGACCAGTaGTGGTGGGATGATGCTGCC +
Preference number: 4 (lower is better)
Translates to: QTTRVRVVPAISGATPSIPTSDQ*WWDDAA
Trigger: GGCAGCATCATCCCACCACCACTGGTCCGAGGTGGG...GATGCTCGGAGTGGCACCAGAGATGGCAGGTACCACCCTGACTCTAGTTGTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCCAAGCAGACTGGTGTTaGGGACATTGGCGACACGGA +
Preference number: 4 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCQADWC*GHWRHG
Trigger: TCCGTGTCGCCAATGTCCCCAACACCAGTCTGCTTG...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GAAACCAGGGTTGGATGGGGAAACGACGGCGACCAATCACAAGAGCAGAAGGCCCACCACGAGGTGCTGTaGCTGAGCCTCGGGACAGCT +
Preference number: 4 (lower is better)
Translates to: ETRVGWGNDGDQSQEQKAHHEVL*LSLGTA
Trigger: AGCTGTCCCGAGGCTCAGCCACAGCACCTCGTGGTG...GGCCTTCTGCTCTTGTGATTGGTCGCCGTCGTTTCCCCATCCAACCCTGGTTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CAGACAACTAGAGTCAGGGTGGTACCTGCCATCTCTGGTGCCACTCCGAGCATCCACCACGAGGTGCTGTaGCTGAGCCTCGGGACAGCT +
Preference number: 4 (lower is better)
Translates to: QTTRVRVVPAISGATPSIHHEVL*LSLGTA
Trigger: AGCTGTCCCGAGGCTCAGCCACAGCACCTCGTGGTG...GATGCTCGGAGTGGCACCAGAGATGGCAGGTACCACCCTGACTCTAGTTGTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGTCACAGTGTCCATGCAGTTTGGGTGACTaGCTGAAAGTGTGCAGAACA +
Preference number: 4 (lower is better)
Translates to: LNFGSPRCQPGPGVSQCPCSLGD*LKVCRT
Trigger: TGTTCTGCACACTTTCAGCCAGTCACCCAAACTGCA...TGGACACTGTGACACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp AAAGAAAACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCTTGGGGGATGGAGCGTaGAGGAATCATGTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: KENEIPAQLREPPVPAWPLGDGA*RNHVQE
Trigger: CTCCTGGACATGATTCCTCCACGCTCCATCCCCCAA...GGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGTTTTCTTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTACCTCCTTCAGCTGCTTaGTCATCCGCTCTCGTTCTT +
Preference number: 4 (lower is better)
Translates to: GQAELAPRSEFLLVSGKLPPSAA*SSALVL
Trigger: AAGAACGAGAGCGGATGATCAAGCAGCTGAAGGAGG...TAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GACTTCTGGCTGAGAGGCCACCCCGGTGCTGCCGTTCCAAGGAGCCAGAAGACTCCTCCTTCAGCTGCTTaGTCATCCGCTCTCGTTCTT +
Preference number: 4 (lower is better)
Translates to: DFWLRGHPGAAVPRSQKTPPSAA*SSALVL
Trigger: AAGAACGAGAGCGGATGATCAAGCAGCTGAAGGAGG...AGTCTTCTGGCTCCTTGGAACGGCAGCACCGGGGTGGCCTCTCAGCCAGAAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR TCA 90 bp GGCCGCCCGTGCGTGCTGGACACACAGCTACTTCTGCCTTTCACCATGGAACCAGAGGCTGCAGTAGGCTaGGGGATGTTGACAAGCAGA +
Preference number: 4 (lower is better)
Translates to: GRPCVLDTQLLLPFTMEPEAAVG*GMLTSR
Trigger: TCTGCTTGTCAACATCCCTCAGCCTACTGCAGCCTC...TGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTCCAGCACGCACGGGCGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCGGAGTGGAATTTGCCTaGGCAGAAGCAACTGCTGTC +
Preference number: 4 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCGVEFA*AEATAV
Trigger: GACAGCAGTTGCTTCTGCTCAGGCAAATTCCACTCC...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp CTAAGTGTGGAAGCCAGGGGTTGCAGTGAGCAGCAACAGACAACTAGAGTCAGGACGAGGTGCTGTGGCTaGGCCTCGGGACAGCTGGCT +
Preference number: 4 (lower is better)
Translates to: LSVEARGCSEQQQTTRVRTRCCG*ASGQLA
Trigger: AGCCAGCTGTCCCGAGGCTCAGCCACAGCACCTCGT...CCTGACTCTAGTTGTCTGTTGCTGCTCACTGCAACCCCTGGCTTCCACACTTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAGTTTGGGTGACTGGCTaGAAGTGTGCAGAACACCAC +
Preference number: 4 (lower is better)
Translates to: GQAELAPRSEFLLVSGKLVWVTG*KCAEHH
Trigger: GTGGTGTTCTGCACACTTTCAGCCAGTCACCCAAAC...TAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GGCCGCCCGTGCGTGCTGGACACACAGCTACTTCTGCCTTTCACCATGGAACCACTATTTCCATGTGGCTaGTTGGGGGATGGAGCGTGG +
Preference number: 4 (lower is better)
Translates to: GRPCVLDTQLLLPFTMEPLFPCG*LGDGAW
Trigger: CCACGCTCCATCCCCCAATCAGCCACATGGAAATAG...TGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTCCAGCACGCACGGGCGGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp AGCAACCAGCTCTGGCTCCAGCACAGTGGACTCAGCATCTCTCTGGAGCCTCTATTGGCAGACACCTGCTaGCCACCTCGGACCAGTGGT +
Preference number: 4 (lower is better)
Translates to: SNQLWLQHSGLSISLEPLLADTC*PPRTSG
Trigger: ACCACTGGTCCGAGGTGGGCAGCAGGTGTCTGCCAA...TAGAGGCTCCAGAGAGATGCTGAGTCCACTGTGCTGGAGCCAGAGCTGGTTGCT
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GAAACCAGGGTTGGATGGGGAAACGACGGCGACCAATCACAAGAGCAGAAGGCCGTCCCTGAATCTGCATaGTGGGCACTGAGGCACGGG +
Preference number: 4 (lower is better)
Translates to: ETRVGWGNDGDQSQEQKAVPESA*WALRHG
Trigger: CCCGTGCCTCAGTGCCCAGCATGCAGATTCAGGGAC...GGCCTTCTGCTCTTGTGATTGGTCGCCGTCGTTTCCCCATCCAACCCTGGTTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCGGTGGGAGTGGAATTTaGCTGAGCAGAAGCAACTGC +
Preference number: 4 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCGGSGI*LSRSNC
Trigger: GCAGTTGCTTCTGCTCAGGCAAATTCCACTCCCACC...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAGGTGGGAGTGGAATTTaGCTGAGCAGAAGCAACTGC +
Preference number: 4 (lower is better)
Translates to: GQAELAPRSEFLLVSGKLGGSGI*LSRSNC
Trigger: GCAGTTGCTTCTGCTCAGGCAAATTCCACTCCCACC...TAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp AAAGAAAACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCCAGTGGCAGAAATCCTaGCTGCTTGTGTCTCCAGCA +
Preference number: 4 (lower is better)
Translates to: KENEIPAQLREPPVPAWPQWQKS*LLVSPA
Trigger: TGCTGGAGACACAAGCAGGCAGGATTTCTGCCACTG...GGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGTTTTCTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GGCCGCCCGTGCGTGCTGGACACACAGCTACTTCTGCCTTTCACCATGGAACCATTCAGGCGACTGGTGTaGTCCACCTTGAGTGCCTTC +
Preference number: 4 (lower is better)
Translates to: GRPCVLDTQLLLPFTMEPFRRLV*STLSAF
Trigger: GAAGGCACTCAAGGTGGAGCACACCAGTCGCCTGAA...TGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTCCAGCACGCACGGGCGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GGCCGCCCGTGCGTGCTGGACACACAGCTACTTCTGCCTTTCACCATGGAACCACGCTGCTCCATCTCCTaGTCTTGCTGTAGAGCCTTC +
Preference number: 4 (lower is better)
Translates to: GRPCVLDTQLLLPFTMEPRCSIS*SCCRAF
Trigger: GAAGGCTCTACAGCAAGAGCAGGAGATGGAGCAGCG...TGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTCCAGCACGCACGGGCGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGGTACCCACACCCTGCTaGAGCAGGCGCTGCTCCATC +
Preference number: 4 (lower is better)
Translates to: LAPRSEFLLVSGKLKAKRVPTPC*SRRCSI
Trigger: GATGGAGCAGCGCCTGCTGCAGCAGGGTGTGGGTAC...CCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp TGTGGCTGGGCCCTACCTGGATGGATGCCTCTTGGCAGGCATGGGAATCATGAGCGTGGGATGTGGAGCTaGAGGCTCAGCCTTGATGCT +
Preference number: 4 (lower is better)
Translates to: CGWALPGWMPLGRHGNHERGMWS*RLSLDA
Trigger: AGCATCAAGGCTGAGCCTGCAGCTCCACATCCCACG...CTCATGATTCCCATGCCTGCCAAGAGGCATCCATCCAGGTAGGGCCCAGCCACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCGACTGGCTGAAAGTGTaGAGAACACCACGAGGTGCT +
Preference number: 4 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCDWLKV*RTPRGA
Trigger: AGCACCTCGTGGTGTTCTGCACACTTTCAGCCAGTC...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp TGTGGCTGGGCCCTACCTGGATGGATGCCTCTTGGCAGGCATGGGAATCATGAGCGAGGGTCCCACCTGTaGTCAGAGGCGTCTTTTTCC +
Preference number: 4 (lower is better)
Translates to: CGWALPGWMPLGRHGNHERGSHL*SEASFS
Trigger: GGAAAAAGACGCCTCTGAGCACAGGTGGGACCCTCG...CTCATGATTCCCATGCCTGCCAAGAGGCATCCATCCAGGTAGGGCCCAGCCACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGCAGGAGGAGGGGTGGTaGCCCCGTAGAGGAATGCTG +
Preference number: 4 (lower is better)
Translates to: LAPRSEFLLVSGKLKAKRQEEGW*PRRGML
Trigger: CAGCATTCCTCTACGGGGCCACCACCCCTCCTCCTG...CCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCCCACACTGGTGGGAGTaGAATTTGCCTGAGCAGAAG +
Preference number: 4 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCPHWWE*NLPEQK
Trigger: CTTCTGCTCAGGCAAATTCCACTCCCACCAGTGTGG...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCCCACAGAAGCCACACTaGTGGGAGTGGAATTTGCCT +
Preference number: 4 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCPQKPH*WEWNLP
Trigger: AGGCAAATTCCACTCCCACCAGTGTGGCTTCTGTGG...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp TGTGGCTGGGCCCTACCTGGATGGATGCCTCTTGGCAGGCATGGGAATCATGAGCAAGAAGTTCATCTCTaGGGCAGGGGGCTTGGGTGG +
Preference number: 4 (lower is better)
Translates to: CGWALPGWMPLGRHGNHEQEVHL*GRGLGW
Trigger: CCACCCAAGCCCCCTGCCCCAGAGATGAACTTCTTG...CTCATGATTCCCATGCCTGCCAAGAGGCATCCATCCAGGTAGGGCCCAGCCACA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAATGCAGTTTGGGTGACTaGCTGAAAGTGTGCAGAACA +
Preference number: 4 (lower is better)
Translates to: RWPGRAGPKVRVSAGVGQCSLGD*LKVCRT
Trigger: TGTTCTGCACACTTTCAGCCAGTCACCCAAACTGCA...TTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp AGCAACCAGCTCTGGCTCCAGCACAGTGGACTCAGCATCTCTCTGGAGCCTCTAGCGTCTTTTTCCAGTTaGAGGCGGTGCCCTTGCCGG +
Preference number: 4 (lower is better)
Translates to: SNQLWLQHSGLSISLEPLASFSS*RRCPCR
Trigger: CCGGCAAGGGCACCGCCTCCAACTGGAAAAAGACGC...TAGAGGCTCCAGAGAGATGCTGAGTCCACTGTGCTGGAGCCAGAGCTGGTTGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GAAACCAGGGTTGGATGGGGAAACGACGGCGACCAATCACAAGAGCAGAAGGCCCGAGTGGAGGAGGTCTaGAGTGAGGTCTTGCCAGCA +
Preference number: 4 (lower is better)
Translates to: ETRVGWGNDGDQSQEQKARVEEV*SEVLPA
Trigger: TGCTGGCAAGACCTCACTTCAGACCTCCTCCACTCG...GGCCTTCTGCTCTTGTGATTGGTCGCCGTCGTTTCCCCATCCAACCCTGGTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GGCCGCCCGTGCGTGCTGGACACACAGCTACTTCTGCCTTTCACCATGGAACCAATGATCCTCTGTCCCTaGATCTGCATGCTGGGCACT +
Preference number: 4 (lower is better)
Translates to: GRPCVLDTQLLLPFTMEPMILCP*ICMLGT
Trigger: AGTGCCCAGCATGCAGATTCAGGGACAGAGGATCAT...TGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTCCAGCACGCACGGGCGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCATTCTGCAGTTTGGGTaGCTGGCTGAAAGTGTGCAG +
Preference number: 4 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCILQFG*LAESVQ
Trigger: CTGCACACTTTCAGCCAGTCACCCAAACTGCAGAAT...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGTTGGCAGACACCTGCTaGCCACCTCGGACCAGTGGT +
Preference number: 4 (lower is better)
Translates to: LAPRSEFLLVSGKLKAKRLADTC*PPRTSG
Trigger: ACCACTGGTCCGAGGTGGGCAGCAGGTGTCTGCCAA...CCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CAGACAACTAGAGTCAGGGTGGTACCTGCCATCTCTGGTGCCACTCCGAGCATCAGTTTGGCAGACACCTaGTGCCCACCTCGGACCAGT +
Preference number: 4 (lower is better)
Translates to: QTTRVRVVPAISGATPSISLADT*CPPRTS
Trigger: ACTGGTCCGAGGTGGGCAGCAGGTGTCTGCCAAACT...GATGCTCGGAGTGGCACCAGAGATGGCAGGTACCACCCTGACTCTAGTTGTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp AGCAACCAGCTCTGGCTCCAGCACAGTGGACTCAGCATCTCTCTGGAGCCTCTAAGTTTGGCAGACACCTaGTGCCCACCTCGGACCAGT +
Preference number: 4 (lower is better)
Translates to: SNQLWLQHSGLSISLEPLSLADT*CPPRTS
Trigger: ACTGGTCCGAGGTGGGCAGCAGGTGTCTGCCAAACT...TAGAGGCTCCAGAGAGATGCTGAGTCCACTGTGCTGGAGCCAGAGCTGGTTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GGCCGCCCGTGCGTGCTGGACACACAGCTACTTCTGCCTTTCACCATGGAACCAACACGGATAAGTCCCTaGTGGATGATCCTCTGTCCC +
Preference number: 4 (lower is better)
Translates to: GRPCVLDTQLLLPFTMEPTRISP*WMILCP
Trigger: GGGACAGAGGATCATCCAGCAGGGACTTATCCGTGT...TGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTCCAGCACGCACGGGCGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCTGGAGACTCAGCAGATaGAACCACAGAAGCCACACT +
Preference number: 4 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCWRLSR*NHRSHT
Trigger: AGTGTGGCTTCTGTGGTTGCATCTGCTGAGTCTCCA...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CCACCCCGGTGCTGCCGTTCCAAGGAGCCAGAAGACTTTTGGTCTATGTCATTGTGCTGCAGCAGGCGCTaGTCCATCTCCTGCTCTTGC +
Preference number: 4 (lower is better)
Translates to: PPRCCRSKEPEDFWSMSLCCSRR*SISCSC
Trigger: GCAAGAGCAGGAGATGGAGCAGCGCCTGCTGCAGCA...CAATGACATAGACCAAAAGTCTTCTGGCTCCTTGGAACGGCAGCACCGGGGTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR GCA 90 bp AGCAACCAGCTCTGGCTCCAGCACAGTGGACTCAGCATCTCTCTGGAGCCTCTACGAGGGTCCCACCTGTaGTCAGAGGCGTCTTTTTCC +
Preference number: 4 (lower is better)
Translates to: SNQLWLQHSGLSISLEPLRGSHL*SEASFS
Trigger: GGAAAAAGACGCCTCTGAGCACAGGTGGGACCCTCG...TAGAGGCTCCAGAGAGATGCTGAGTCCACTGTGCTGGAGCCAGAGCTGGTTGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGAAGCCTGCACTCGGCTCTaGCATCACCCTGCTGTCTCC +
Preference number: 4 (lower is better)
Translates to: GPKVRVSAGVGQTKGKKEACTRL*HHPAVS
Trigger: GGAGACAGCAGGGTGATGCCAGAGCCGAGTGCAGGC...TTCCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTACTTTCAAGGCTACTGTaGTCAGGCCATTCACCCTTG +
Preference number: 4 (lower is better)
Translates to: GQAELAPRSEFLLVSGKLLSRLL*SGHSPL
Trigger: CAAGGGTGAATGGCCTGACCACAGTAGCCTTGAAAG...TAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp AAAGAAAACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCCTTTCAAGGCTACTGTaGTCAGGCCATTCACCCTTG +
Preference number: 4 (lower is better)
Translates to: KENEIPAQLREPPVPAWPLSRLL*SGHSPL
Trigger: CAAGGGTGAATGGCCTGACCACAGTAGCCTTGAAAG...GGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGTTTTCTTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGCCAGCAGGAATGTTCTaGGTACCCCGCACGAGTGGG +
Preference number: 4 (lower is better)
Translates to: LAPRSEFLLVSGKLKAKRPAGMF*VPRTSG
Trigger: CCCACTCGTGCGGGGTACCCAGAACATTCCTGCTGG...CCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGCCTGTGGTCCCAGTTTaGCAGACACCTGCTGCCCAC +
Preference number: 4 (lower is better)
Translates to: LAPRSEFLLVSGKLKAKRPVVPV*QTPAAH
Trigger: GTGGGCAGCAGGTGTCTGCCAAACTGGGACCACAGG...CCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CTAAGTGTGGAAGCCAGGGGTTGCAGTGAGCAGCAACAGACAACTAGAGTCAGGCAGGAGGAGGGGTGGTaGCCCCGTAGAGGAATGCTG +
Preference number: 4 (lower is better)
Translates to: LSVEARGCSEQQQTTRVRQEEGW*PRRGML
Trigger: CAGCATTCCTCTACGGGGCCACCACCCCTCCTCCTG...CCTGACTCTAGTTGTCTGTTGCTGCTCACTGCAACCCCTGGCTTCCACACTTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GAAACCAGGGTTGGATGGGGAAACGACGGCGACCAATCACAAGAGCAGAAGGCCCAAGAAGTTCATCTCTaGGGCAGGGGGCTTGGGTGG +
Preference number: 4 (lower is better)
Translates to: ETRVGWGNDGDQSQEQKAQEVHL*GRGLGW
Trigger: CCACCCAAGCCCCCTGCCCCAGAGATGAACTTCTTG...GGCCTTCTGCTCTTGTGATTGGTCGCCGTCGTTTCCCCATCCAACCCTGGTTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GCTCCCACCCACGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGTTGAGTGCCTTCTTTTaGTTGGATGTCATGCAGTTC +
Preference number: 4 (lower is better)
Translates to: APTHAGQAELAPRSEFLLLSAFF*LDVMQF
Trigger: GAACTGCATGACATCCAACCAAAAGAAGGCACTCAA...CAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCGTGGGTGGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GAAACCAGGGTTGGATGGGGAAACGACGGCGACCAATCACAAGAGCAGAAGGCCCTTCAGCGTGGGATGTaGAGCTGCAGGCTCAGCCTT +
Preference number: 4 (lower is better)
Translates to: ETRVGWGNDGDQSQEQKALQRGM*SCRLSL
Trigger: AAGGCTGAGCCTGCAGCTCCACATCCCACGCTGAAG...GGCCTTCTGCTCTTGTGATTGGTCGCCGTCGTTTCCCCATCCAACCCTGGTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp AGCAACCAGCTCTGGCTCCAGCACAGTGGACTCAGCATCTCTCTGGAGCCTCTAGTGTACTGCCAAGCTTaGGCTGACGAAGGCGAGGGT +
Preference number: 4 (lower is better)
Translates to: SNQLWLQHSGLSISLEPLVYCQA*ADEGEG
Trigger: ACCCTCGCCTTCGTCAGCCCAAGCTTGGCAGTACAC...TAGAGGCTCCAGAGAGATGCTGAGTCCACTGTGCTGGAGCCAGAGCTGGTTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp TGTGGCTGGGCCCTACCTGGATGGATGCCTCTTGGCAGGCATGGGAATCATGAGTTGGGGGATGGAGCGTaGAGGAATCATGTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: CGWALPGWMPLGRHGNHELGDGA*RNHVQE
Trigger: CTCCTGGACATGATTCCTCCACGCTCCATCCCCCAA...CTCATGATTCCCATGCCTGCCAAGAGGCATCCATCCAGGTAGGGCCCAGCCACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp CTAAGTGTGGAAGCCAGGGGTTGCAGTGAGCAGCAACAGACAACTAGAGTCAGGCTGCAGGCTCAGCCTTaGTGCTGGCAGTACCCACAC +
Preference number: 4 (lower is better)
Translates to: LSVEARGCSEQQQTTRVRLQAQP*CWQYPH
Trigger: GTGTGGGTACTGCCAGCATCAAGGCTGAGCCTGCAG...CCTGACTCTAGTTGTCTGTTGCTGCTCACTGCAACCCCTGGCTTCCACACTTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GAAACCAGGGTTGGATGGGGAAACGACGGCGACCAATCACAAGAGCAGAAGGCCCTATTTCCATGTGGCTaGTTGGGGGATGGAGCGTGG +
Preference number: 4 (lower is better)
Translates to: ETRVGWGNDGDQSQEQKALFPCG*LGDGAW
Trigger: CCACGCTCCATCCCCCAATCAGCCACATGGAAATAG...GGCCTTCTGCTCTTGTGATTGGTCGCCGTCGTTTCCCCATCCAACCCTGGTTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp TGTGGCTGGGCCCTACCTGGATGGATGCCTCTTGGCAGGCATGGGAATCATGAGAGTGTCTTCTCCAGCTaGTTGCGCAGTGCTAGCTTG +
Preference number: 4 (lower is better)
Translates to: CGWALPGWMPLGRHGNHESVFSS*LRSASL
Trigger: CAAGCTAGCACTGCGCAAGCAGCTGGAGAAGACACT...CTCATGATTCCCATGCCTGCCAAGAGGCATCCATCCAGGTAGGGCCCAGCCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCTCCATCTCCTGCTCTTaGTGTAGAGCCTTCACAAAG +
Preference number: 4 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCSISCS*CRAFTK
Trigger: CTTTGTGAAGGCTCTACAGCAAGAGCAGGAGATGGA...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTATCCATCTCCTGCTCTTaGTGTAGAGCCTTCACAAAG +
Preference number: 4 (lower is better)
Translates to: GQAELAPRSEFLLVSGKLSISCS*CRAFTK
Trigger: CTTTGTGAAGGCTCTACAGCAAGAGCAGGAGATGGA...TAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp AGCAACCAGCTCTGGCTCCAGCACAGTGGACTCAGCATCTCTCTGGAGCCTCTACTCTCTCGGAATGTCTaGCAGTCCTGCTTACCAGGG +
Preference number: 4 (lower is better)
Translates to: SNQLWLQHSGLSISLEPLLSRNV*QSCLPG
Trigger: CCCTGGTAAGCAGGACTGGCAGACATTCCGAGAGAG...TAGAGGCTCCAGAGAGATGCTGAGTCCACTGTGCTGGAGCCAGAGCTGGTTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGCGAGGGTCCCACCTGTaGTCAGAGGCGTCTTTTTCC +
Preference number: 4 (lower is better)
Translates to: LAPRSEFLLVSGKLKAKRRGSHL*SEASFS
Trigger: GGAAAAAGACGCCTCTGAGCACAGGTGGGACCCTCG...CCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CTAAGTGTGGAAGCCAGGGGTTGCAGTGAGCAGCAACAGACAACTAGAGTCAGGCCAGCAGGAATGTTCTaGGTACCCCGCACGAGTGGG +
Preference number: 4 (lower is better)
Translates to: LSVEARGCSEQQQTTRVRPAGMF*VPRTSG
Trigger: CCCACTCGTGCGGGGTACCCAGAACATTCCTGCTGG...CCTGACTCTAGTTGTCTGTTGCTGCTCACTGCAACCCCTGGCTTCCACACTTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CTAAGTGTGGAAGCCAGGGGTTGCAGTGAGCAGCAACAGACAACTAGAGTCAGGCCTGTGGTCCCAGTTTaGCAGACACCTGCTGCCCAC +
Preference number: 4 (lower is better)
Translates to: LSVEARGCSEQQQTTRVRPVVPV*QTPAAH
Trigger: GTGGGCAGCAGGTGTCTGCCAAACTGGGACCACAGG...CCTGACTCTAGTTGTCTGTTGCTGCTCACTGCAACCCCTGGCTTCCACACTTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp AGCAACCAGCTCTGGCTCCAGCACAGTGGACTCAGCATCTCTCTGGAGCCTCTATTGAGAGCTGGCCTGTaGTCCCAGTTTGGCAGACAC +
Preference number: 4 (lower is better)
Translates to: SNQLWLQHSGLSISLEPLLRAGL*SQFGRH
Trigger: GTGTCTGCCAAACTGGGACCACAGGCCAGCTCTCAA...TAGAGGCTCCAGAGAGATGCTGAGTCCACTGTGCTGGAGCCAGAGCTGGTTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CAGACAACTAGAGTCAGGGTGGTACCTGCCATCTCTGGTGCCACTCCGAGCATCTTGAGAGCTGGCCTGTaGTCCCAGTTTGGCAGACAC +
Preference number: 4 (lower is better)
Translates to: QTTRVRVVPAISGATPSILRAGL*SQFGRH
Trigger: GTGTCTGCCAAACTGGGACCACAGGCCAGCTCTCAA...GATGCTCGGAGTGGCACCAGAGATGGCAGGTACCACCCTGACTCTAGTTGTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CAGACAACTAGAGTCAGGGTGGTACCTGCCATCTCTGGTGCCACTCCGAGCATCCAAGCAGACTGGTGTTaGGGACATTGGCGACACGGA +
Preference number: 4 (lower is better)
Translates to: QTTRVRVVPAISGATPSIQADWC*GHWRHG
Trigger: TCCGTGTCGCCAATGTCCCCAACACCAGTCTGCTTG...GATGCTCGGAGTGGCACCAGAGATGGCAGGTACCACCCTGACTCTAGTTGTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp AGCAACCAGCTCTGGCTCCAGCACAGTGGACTCAGCATCTCTCTGGAGCCTCTACAGCAGCTGCTGCAGTaGCAGAAATCCTGCCTGCTT +
Preference number: 4 (lower is better)
Translates to: SNQLWLQHSGLSISLEPLQQLLQ*QKSCLL
Trigger: AAGCAGGCAGGATTTCTGCCACTGCAGCAGCTGCTG...TAGAGGCTCCAGAGAGATGCTGAGTCCACTGTGCTGGAGCCAGAGCTGGTTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GAAACCAGGGTTGGATGGGGAAACGACGGCGACCAATCACAAGAGCAGAAGGCCCAGCAGCTGCTGCAGTaGCAGAAATCCTGCCTGCTT +
Preference number: 4 (lower is better)
Translates to: ETRVGWGNDGDQSQEQKAQQLLQ*QKSCLL
Trigger: AAGCAGGCAGGATTTCTGCCACTGCAGCAGCTGCTG...GGCCTTCTGCTCTTGTGATTGGTCGCCGTCGTTTCCCCATCCAACCCTGGTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GAAACCAGGGTTGGATGGGGAAACGACGGCGACCAATCACAAGAGCAGAAGGCCTTCCATGTGGCTGATTaGGGGATGGAGCGTGGAGGA +
Preference number: 4 (lower is better)
Translates to: ETRVGWGNDGDQSQEQKAFHVAD*GMERGG
Trigger: TCCTCCACGCTCCATCCCCCAATCAGCCACATGGAA...GGCCTTCTGCTCTTGTGATTGGTCGCCGTCGTTTCCCCATCCAACCCTGGTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR CAA 72 bp AGGGCTGTGGCTGGGCCCTACCTGGATGGATGCCTCTaGGCAGGCATGGGAATCATGAGATTGTGTCCATCA +
Preference number: 4 (lower is better)
Translates to: RAVAGPYLDGCL*AGMGIMRLCPS
Trigger: TGATGGACACAATCTCATGATTCCCATGCCTGCCAAGAGGCATCCATCCAGGTAGGGCCCAGCCACAGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GAAACCAGGGTTGGATGGGGAAACGACGGCGACCAATCACAAGAGCAGAAGGCCATGATCCTCTGTCCCTaGATCTGCATGCTGGGCACT +
Preference number: 4 (lower is better)
Translates to: ETRVGWGNDGDQSQEQKAMILCP*ICMLGT
Trigger: AGTGCCCAGCATGCAGATTCAGGGACAGAGGATCAT...GGCCTTCTGCTCTTGTGATTGGTCGCCGTCGTTTCCCCATCCAACCCTGGTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GAAACCAGGGTTGGATGGGGAAACGACGGCGACCAATCACAAGAGCAGAAGGCCGTTTGGGTGACTGGCTaGAAGTGTGCAGAACACCAC +
Preference number: 4 (lower is better)
Translates to: ETRVGWGNDGDQSQEQKAVWVTG*KCAEHH
Trigger: GTGGTGTTCTGCACACTTTCAGCCAGTCACCCAAAC...GGCCTTCTGCTCTTGTGATTGGTCGCCGTCGTTTCCCCATCCAACCCTGGTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGAAAGTTTGGCAGACACCTaGTGCCCACCTCGGACCAGT +
Preference number: 4 (lower is better)
Translates to: GPKVRVSAGVGQTKGKKESLADT*CPPRTS
Trigger: ACTGGTCCGAGGTGGGCAGCAGGTGTCTGCCAAACT...TTCCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CAGACAACTAGAGTCAGGGTGGTACCTGCCATCTCTGGTGCCACTCCGAGCATCACACGGATAAGTCCCTaGTGGATGATCCTCTGTCCC +
Preference number: 4 (lower is better)
Translates to: QTTRVRVVPAISGATPSITRISP*WMILCP
Trigger: GGGACAGAGGATCATCCAGCAGGGACTTATCCGTGT...GATGCTCGGAGTGGCACCAGAGATGGCAGGTACCACCCTGACTCTAGTTGTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CAGACAACTAGAGTCAGGGTGGTACCTGCCATCTCTGGTGCCACTCCGAGCATCAGTGTCTTCTCCAGCTaGTTGCGCAGTGCTAGCTTG +
Preference number: 4 (lower is better)
Translates to: QTTRVRVVPAISGATPSISVFSS*LRSASL
Trigger: CAAGCTAGCACTGCGCAAGCAGCTGGAGAAGACACT...GATGCTCGGAGTGGCACCAGAGATGGCAGGTACCACCCTGACTCTAGTTGTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp AGCAACCAGCTCTGGCTCCAGCACAGTGGACTCAGCATCTCTCTGGAGCCTCTAGGCAGAAATCCTGCCTaGTTGTGTCTCCAGCAGGTT +
Preference number: 4 (lower is better)
Translates to: SNQLWLQHSGLSISLEPLGRNPA*LCLQQV
Trigger: AACCTGCTGGAGACACAAGCAGGCAGGATTTCTGCC...TAGAGGCTCCAGAGAGATGCTGAGTCCACTGTGCTGGAGCCAGAGCTGGTTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CAGACAACTAGAGTCAGGGTGGTACCTGCCATCTCTGGTGCCACTCCGAGCATCGGCAGAAATCCTGCCTaGTTGTGTCTCCAGCAGGTT +
Preference number: 4 (lower is better)
Translates to: QTTRVRVVPAISGATPSIGRNPA*LCLQQV
Trigger: AACCTGCTGGAGACACAAGCAGGCAGGATTTCTGCC...GATGCTCGGAGTGGCACCAGAGATGGCAGGTACCACCCTGACTCTAGTTGTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp AGCAACCAGCTCTGGCTCCAGCACAGTGGACTCAGCATCTCTCTGGAGCCTCTACAGTGGCAGAAATCCTaGCTGCTTGTGTCTCCAGCA +
Preference number: 4 (lower is better)
Translates to: SNQLWLQHSGLSISLEPLQWQKS*LLVSPA
Trigger: TGCTGGAGACACAAGCAGGCAGGATTTCTGCCACTG...TAGAGGCTCCAGAGAGATGCTGAGTCCACTGTGCTGGAGCCAGAGCTGGTTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGTTCAGGCGACTGGTGTaGTCCACCTTGAGTGCCTTC +
Preference number: 4 (lower is better)
Translates to: LAPRSEFLLVSGKLKAKRFRRLV*STLSAF
Trigger: GAAGGCACTCAAGGTGGAGCACACCAGTCGCCTGAA...CCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CTAAGTGTGGAAGCCAGGGGTTGCAGTGAGCAGCAACAGACAACTAGAGTCAGGCGTGGGATGTGGAGCTaGAGGCTCAGCCTTGATGCT +
Preference number: 4 (lower is better)
Translates to: LSVEARGCSEQQQTTRVRRGMWS*RLSLDA
Trigger: AGCATCAAGGCTGAGCCTGCAGCTCCACATCCCACG...CCTGACTCTAGTTGTCTGTTGCTGCTCACTGCAACCCCTGGCTTCCACACTTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GAAACCAGGGTTGGATGGGGAAACGACGGCGACCAATCACAAGAGCAGAAGGCCGACTGGCTGAAAGTGTaGAGAACACCACGAGGTGCT +
Preference number: 4 (lower is better)
Translates to: ETRVGWGNDGDQSQEQKADWLKV*RTPRGA
Trigger: AGCACCTCGTGGTGTTCTGCACACTTTCAGCCAGTC...GGCCTTCTGCTCTTGTGATTGGTCGCCGTCGTTTCCCCATCCAACCCTGGTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGCTCTCTCGGAATGTCTaGCAGTCCTGCTTACCAGGG +
Preference number: 4 (lower is better)
Translates to: LAPRSEFLLVSGKLKAKRLSRNV*QSCLPG
Trigger: CCCTGGTAAGCAGGACTGGCAGACATTCCGAGAGAG...CCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGCAGATCCTGTGCCCATaGCCTCTGTTGTCCTCAGCA +
Preference number: 4 (lower is better)
Translates to: LAPRSEFLLVSGKLKAKRQILCP*PLLSSA
Trigger: TGCTGAGGACAACAGAGGCCATGGGCACAGGATCTG...CCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp AGCAACCAGCTCTGGCTCCAGCACAGTGGACTCAGCATCTCTCTGGAGCCTCTACCACACTGGTGGGAGTaGAATTTGCCTGAGCAGAAG +
Preference number: 4 (lower is better)
Translates to: SNQLWLQHSGLSISLEPLPHWWE*NLPEQK
Trigger: CTTCTGCTCAGGCAAATTCCACTCCCACCAGTGTGG...TAGAGGCTCCAGAGAGATGCTGAGTCCACTGTGCTGGAGCCAGAGCTGGTTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GAAACCAGGGTTGGATGGGGAAACGACGGCGACCAATCACAAGAGCAGAAGGCCCCACAGAAGCCACACTaGTGGGAGTGGAATTTGCCT +
Preference number: 4 (lower is better)
Translates to: ETRVGWGNDGDQSQEQKAPQKPH*WEWNLP
Trigger: AGGCAAATTCCACTCCCACCAGTGTGGCTTCTGTGG...GGCCTTCTGCTCTTGTGATTGGTCGCCGTCGTTTCCCCATCCAACCCTGGTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGAACTTCAGCGTGGGATGTaGAGCTGCAGGCTCAGCCTT +
Preference number: 4 (lower is better)
Translates to: GPKVRVSAGVGQTKGKKELQRGM*SCRLSL
Trigger: AAGGCTGAGCCTGCAGCTCCACATCCCACGCTGAAG...TTCCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CTCAACAGCATTCAGGCTGACTCAGTGCATGGAGGTGTTTGTTACAGCCAGCATCACCACGAGGTGCTGTaGCTGAGCCTCGGGACAGCT +
Preference number: 4 (lower is better)
Translates to: LNSIQADSVHGGVCYSQHHHEVL*LSLGTA
Trigger: AGCTGTCCCGAGGCTCAGCCACAGCACCTCGTGGTG...ATGCTGGCTGTAACAAACACCTCCATGCACTGAGTCAGCCTGAATGCTGTTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR CCA 90 bp CTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGTTCCATGTGGCTGATTaGGGGATGGAGCGTGGAGGA +
Preference number: 4 (lower is better)
Translates to: LAPRSEFLLVSGKLKAKRFHVAD*GMERGG
Trigger: TCCTCCACGCTCCATCCCCCAATCAGCCACATGGAA...CCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGAAGGAGGAGGTCTGAAGTaGGGTCTTGCCAGCAGGAAT +
Preference number: 4 (lower is better)
Translates to: GPKVRVSAGVGQTKGKKEGGGLK*GLASRN
Trigger: ATTCCTGCTGGCAAGACCTCACTTCAGACCTCCTCC...TTCCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CTCAACAGCATTCAGGCTGACTCAGTGCATGGAGGTGTTTGTTACAGCCAGCATTTGGCAGACACCTGCTaGCCACCTCGGACCAGTGGT +
Preference number: 4 (lower is better)
Translates to: LNSIQADSVHGGVCYSQHLADTC*PPRTSG
Trigger: ACCACTGGTCCGAGGTGGGCAGCAGGTGTCTGCCAA...ATGCTGGCTGTAACAAACACCTCCATGCACTGAGTCAGCCTGAATGCTGTTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR GCA 90 bp CAGACAACTAGAGTCAGGGTGGTACCTGCCATCTCTGGTGCCACTCCGAGCATCTGGAGACTCAGCAGATaGAACCACAGAAGCCACACT +
Preference number: 4 (lower is better)
Translates to: QTTRVRVVPAISGATPSIWRLSR*NHRSHT
Trigger: AGTGTGGCTTCTGTGGTTGCATCTGCTGAGTCTCCA...GATGCTCGGAGTGGCACCAGAGATGGCAGGTACCACCCTGACTCTAGTTGTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp TGTGGCTGGGCCCTACCTGGATGGATGCCTCTTGGCAGGCATGGGAATCATGAGGTGCTCCACCTTGAGTaGCTTCTTTTGGTTGGATGT +
Preference number: 4 (lower is better)
Translates to: CGWALPGWMPLGRHGNHEVLHLE*LLLVGC
Trigger: ACATCCAACCAAAAGAAGGCACTCAAGGTGGAGCAC...CTCATGATTCCCATGCCTGCCAAGAGGCATCCATCCAGGTAGGGCCCAGCCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGAAGCTGAGGCTGCATTCTaGAGTTTGGGTGACTGGCTG +
Preference number: 4 (lower is better)
Translates to: GPKVRVSAGVGQTKGKKEAEAAF*SLGDWL
Trigger: CAGCCAGTCACCCAAACTGCAGAATGCAGCCTCAGC...TTCCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CTAAGTGTGGAAGCCAGGGGTTGCAGTGAGCAGCAACAGACAACTAGAGTCAGGTTGAGAGCTGGCCTGTaGTCCCAGTTTGGCAGACAC +
Preference number: 4 (lower is better)
Translates to: LSVEARGCSEQQQTTRVRLRAGL*SQFGRH
Trigger: GTGTCTGCCAAACTGGGACCACAGGCCAGCTCTCAA...CCTGACTCTAGTTGTCTGTTGCTGCTCACTGCAACCCCTGGCTTCCACACTTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGCCACACTGGTGGGAGTaGAATTTGCCTGAGCAGAAG +
Preference number: 4 (lower is better)
Translates to: LAPRSEFLLVSGKLKAKRPHWWE*NLPEQK
Trigger: CTTCTGCTCAGGCAAATTCCACTCCCACCAGTGTGG...CCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CTAAGTGTGGAAGCCAGGGGTTGCAGTGAGCAGCAACAGACAACTAGAGTCAGGCAGCAGCTGCTGCAGTaGCAGAAATCCTGCCTGCTT +
Preference number: 4 (lower is better)
Translates to: LSVEARGCSEQQQTTRVRQQLLQ*QKSCLL
Trigger: AAGCAGGCAGGATTTCTGCCACTGCAGCAGCTGCTG...CCTGACTCTAGTTGTCTGTTGCTGCTCACTGCAACCCCTGGCTTCCACACTTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp AAAGAAAACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCTTGAGTGCCTTCTTTTaGTTGGATGTCATGCAGTTC +
Preference number: 4 (lower is better)
Translates to: KENEIPAQLREPPVPAWPLSAFF*LDVMQF
Trigger: GAACTGCATGACATCCAACCAAAAGAAGGCACTCAA...GGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGTTTTCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGTGGCTGATTGGGGGATaGAGCGTGGAGGAATCATGT +
Preference number: 4 (lower is better)
Translates to: LAPRSEFLLVSGKLKAKRWLIGG*SVEESC
Trigger: ACATGATTCCTCCACGCTCCATCCCCCAATCAGCCA...CCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp CTAAGTGTGGAAGCCAGGGGTTGCAGTGAGCAGCAACAGACAACTAGAGTCAGGGGAGTGGAATTTGCCTaGGCAGAAGCAACTGCTGTC +
Preference number: 4 (lower is better)
Translates to: LSVEARGCSEQQQTTRVRGVEFA*AEATAV
Trigger: GACAGCAGTTGCTTCTGCTCAGGCAAATTCCACTCC...CCTGACTCTAGTTGTCTGTTGCTGCTCACTGCAACCCCTGGCTTCCACACTTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGAATGGTGTGCTCCACCTTaGGTGCCTTCTTTTGGTTGG +
Preference number: 4 (lower is better)
Translates to: GPKVRVSAGVGQTKGKKEWCAPP*VPSFGW
Trigger: CCAACCAAAAGAAGGCACTCAAGGTGGAGCACACCA...TTCCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp CTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGATTCTGCAGTTTGGGTaGCTGGCTGAAAGTGTGCAG +
Preference number: 4 (lower is better)
Translates to: LAPRSEFLLVSGKLKAKRILQFG*LAESVQ
Trigger: CTGCACACTTTCAGCCAGTCACCCAAACTGCAGAAT...CCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CTAAGTGTGGAAGCCAGGGGTTGCAGTGAGCAGCAACAGACAACTAGAGTCAGGGGTGGGAGTGGAATTTaGCTGAGCAGAAGCAACTGC +
Preference number: 4 (lower is better)
Translates to: LSVEARGCSEQQQTTRVRGGSGI*LSRSNC
Trigger: GCAGTTGCTTCTGCTCAGGCAAATTCCACTCCCACC...CCTGACTCTAGTTGTCTGTTGCTGCTCACTGCAACCCCTGGCTTCCACACTTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGTGGAGACTCAGCAGATaGAACCACAGAAGCCACACT +
Preference number: 4 (lower is better)
Translates to: LAPRSEFLLVSGKLKAKRWRLSR*NHRSHT
Trigger: AGTGTGGCTTCTGTGGTTGCATCTGCTGAGTCTCCA...CCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CTAAGTGTGGAAGCCAGGGGTTGCAGTGAGCAGCAACAGACAACTAGAGTCAGGGGCAGAAATCCTGCCTaGTTGTGTCTCCAGCAGGTT +
Preference number: 4 (lower is better)
Translates to: LSVEARGCSEQQQTTRVRGRNPA*LCLQQV
Trigger: AACCTGCTGGAGACACAAGCAGGCAGGATTTCTGCC...CCTGACTCTAGTTGTCTGTTGCTGCTCACTGCAACCCCTGGCTTCCACACTTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GACACACAGCTACTTCTGCCTTTCACCATGGAACCAATTGTTAAGAGAATGGGGCCCACCTCGGACCAGTaGTGGTGGGATGATGCTGCC +
Preference number: 4 (lower is better)
Translates to: DTQLLLPFTMEPIVKRMGPTSDQ*WWDDAA
Trigger: GGCAGCATCATCCCACCACCACTGGTCCGAGGTGGG...CCCCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GCCCCAATCCCCATACCCTGCACTAGTGTAACTTACACATTGAGGATCAGAAAACCCACCTCGGACCAGTaGTGGTGGGATGATGCTGCC +
Preference number: 4 (lower is better)
Translates to: APIPIPCTSVTYTLRIRKPTSDQ*WWDDAA
Trigger: GGCAGCATCATCCCACCACCACTGGTCCGAGGTGGG...TTTTCTGATCCTCAATGTGTAAGTTACACTAGTGCAGGGTATGGGGATTGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR CAA 72 bp AAGTCCCTAACTGTACTGTGTCAAGGGAAACCAGGGTaGGATGGGGAAACGACGGCGACCAATCACAAGAGC +
Preference number: 4 (lower is better)
Translates to: KSLTVLCQGKPG*DGETTATNHKS
Trigger: GCTCTTGTGATTGGTCGCCGTCGTTTCCCCATCCAACCCTGGTTTCCCTTGACACAGTACAGTTAGGGACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
3UTR CAA 72 bp GGTTGGATGACAGGTGTATGGGAGAAGTCACAAGACTaGGAAGTCTGGATGCACCAGGACAACCGAACCCTC +
Preference number: 4 (lower is better)
Translates to: GWMTGVWEKSQD*EVWMHQDNRTL
Trigger: GAGGGTTCGGTTGTCCTGGTGCATCCAGACTTCCAAGTCTTGTGACTTCTCCCATACACCTGTCATCCAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR TCA 90 bp CTAAGTGTGGAAGCCAGGGGTTGCAGTGAGCAGCAACAGACAACTAGAGTCAGGATTCTGCAGTTTGGGTaGCTGGCTGAAAGTGTGCAG +
Preference number: 4 (lower is better)
Translates to: LSVEARGCSEQQQTTRVRILQFG*LAESVQ
Trigger: CTGCACACTTTCAGCCAGTCACCCAAACTGCAGAAT...CCTGACTCTAGTTGTCTGTTGCTGCTCACTGCAACCCCTGGCTTCCACACTTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp AAACTTCAATTTCTGTTAATTCCCCCAAAACCACCCTGGGAAGTGACACACTCACTGCCAAGCTTGGGCTaGCGAAGGCGAGGGTCCCAC +
Preference number: 4 (lower is better)
Translates to: KLQFLLIPPKPPWEVTHSLPSLG*RRRGSH
Trigger: GTGGGACCCTCGCCTTCGTCAGCCCAAGCTTGGCAG...TGAGTGTGTCACTTCCCAGGGTGGTTTTGGGGGAATTAACAGAAATTGAAGTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065169.12
ENSMUST00000177851.9
CDS-3UTR GCA 90 bp CAAGTAGCAACTGCCCCAATCCCCATACCCTGCACTAGTGTAACTTACACATTGGGGTGCGCTTCTGACTaGGGGTTCGGCATGCTTCTT +
Preference number: 4 (lower is better)
Translates to: QVATAPIPIPCTSVTYTLGCASD*GFGMLL
Trigger: AAGAAGCATGCCGAACCCGCAGTCAGAAGCGCACCC...CAATGTGTAAGTTACACTAGTGCAGGGTATGGGGATTGGGGCAGTTGCTACTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR GCA 90 bp GACACACAGCTACTTCTGCCTTTCACCATGGAACCAATTGTTAAGAGAATGGGGTTGGCAGACACCTGCTaGCCACCTCGGACCAGTGGT +
Preference number: 4 (lower is better)
Translates to: DTQLLLPFTMEPIVKRMGLADTC*PPRTSG
Trigger: ACCACTGGTCCGAGGTGGGCAGCAGGTGTCTGCCAA...CCCCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GACACACAGCTACTTCTGCCTTTCACCATGGAACCAATTGTTAAGAGAATGGGGCCAGCAGGAATGTTCTaGGTACCCCGCACGAGTGGG +
Preference number: 4 (lower is better)
Translates to: DTQLLLPFTMEPIVKRMGPAGMF*VPRTSG
Trigger: CCCACTCGTGCGGGGTACCCAGAACATTCCTGCTGG...CCCCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GACACACAGCTACTTCTGCCTTTCACCATGGAACCAATTGTTAAGAGAATGGGGGGGTGCGCTTCTGACTaGGGGTTCGGCATGCTTCTT +
Preference number: 4 (lower is better)
Translates to: DTQLLLPFTMEPIVKRMGGCASD*GFGMLL
Trigger: AAGAAGCATGCCGAACCCGCAGTCAGAAGCGCACCC...CCCCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTC
51% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GACACACAGCTACTTCTGCCTTTCACCATGGAACCAATTGTTAAGAGAATGGGGAGTTTGGCAGACACCTaGTGCCCACCTCGGACCAGT +
Preference number: 4 (lower is better)
Translates to: DTQLLLPFTMEPIVKRMGSLADT*CPPRTS
Trigger: ACTGGTCCGAGGTGGGCAGCAGGTGTCTGCCAAACT...CCCCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CTAAGTGTGGAAGCCAGGGGTTGCAGTGAGCAGCAACAGACAACTAGAGTCAGGGTGCTCCACCTTGAGTaGCTTCTTTTGGTTGGATGT +
Preference number: 4 (lower is better)
Translates to: LSVEARGCSEQQQTTRVRVLHLE*LLLVGC
Trigger: ACATCCAACCAAAAGAAGGCACTCAAGGTGGAGCAC...CCTGACTCTAGTTGTCTGTTGCTGCTCACTGCAACCCCTGGCTTCCACACTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGAAGTGCTCCACCTTGAGTaGCTTCTTTTGGTTGGATGT +
Preference number: 4 (lower is better)
Translates to: GPKVRVSAGVGQTKGKKEVLHLE*LLLVGC
Trigger: ACATCCAACCAAAAGAAGGCACTCAAGGTGGAGCAC...TTCCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp CTAAGTGTGGAAGCCAGGGGTTGCAGTGAGCAGCAACAGACAACTAGAGTCAGGTCCATCTCCTGCTCTTaGTGTAGAGCCTTCACAAAG +
Preference number: 4 (lower is better)
Translates to: LSVEARGCSEQQQTTRVRSISCS*CRAFTK
Trigger: CTTTGTGAAGGCTCTACAGCAAGAGCAGGAGATGGA...CCTGACTCTAGTTGTCTGTTGCTGCTCACTGCAACCCCTGGCTTCCACACTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR GCA 90 bp GACACACAGCTACTTCTGCCTTTCACCATGGAACCAATTGTTAAGAGAATGGGGGCTCCAGCTCTCACCTaGTTCAGCGTGGGATGTGGA +
Preference number: 4 (lower is better)
Translates to: DTQLLLPFTMEPIVKRMGAPALT*FSVGCG
Trigger: TCCACATCCCACGCTGAAGCAGGTGAGAGCTGGAGC...CCCCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR CCA 90 bp CTCAACAGCATTCAGGCTGACTCAGTGCATGGAGGTGTTTGTTACAGCCAGCATCCACAGAAGCCACACTaGTGGGAGTGGAATTTGCCT +
Preference number: 4 (lower is better)
Translates to: LNSIQADSVHGGVCYSQHPQKPH*WEWNLP
Trigger: AGGCAAATTCCACTCCCACCAGTGTGGCTTCTGTGG...ATGCTGGCTGTAACAAACACCTCCATGCACTGAGTCAGCCTGAATGCTGTTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR CCA 90 bp GGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGAATGCAGTTTGGGTGACTaGCTGAAAGTGTGCAGAACA +
Preference number: 4 (lower is better)
Translates to: GPKVRVSAGVGQTKGKKECSLGD*LKVCRT
Trigger: TGTTCTGCACACTTTCAGCCAGTCACCCAAACTGCA...TTCCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CTAAGTGTGGAAGCCAGGGGTTGCAGTGAGCAGCAACAGACAACTAGAGTCAGGTGCAGTTTGGGTGACTaGCTGAAAGTGTGCAGAACA +
Preference number: 4 (lower is better)
Translates to: LSVEARGCSEQQQTTRVRCSLGD*LKVCRT
Trigger: TGTTCTGCACACTTTCAGCCAGTCACCCAAACTGCA...CCTGACTCTAGTTGTCTGTTGCTGCTCACTGCAACCCCTGGCTTCCACACTTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GACACACAGCTACTTCTGCCTTTCACCATGGAACCAATTGTTAAGAGAATGGGGGTGTACTGCCAAGCTTaGGCTGACGAAGGCGAGGGT +
Preference number: 4 (lower is better)
Translates to: DTQLLLPFTMEPIVKRMGVYCQA*ADEGEG
Trigger: ACCCTCGCCTTCGTCAGCCCAAGCTTGGCAGTACAC...CCCCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp GACACACAGCTACTTCTGCCTTTCACCATGGAACCAATTGTTAAGAGAATGGGGGGAGGAGGTCTGAAGTaGGGTCTTGCCAGCAGGAAT +
Preference number: 4 (lower is better)
Translates to: DTQLLLPFTMEPIVKRMGGGGLK*GLASRN
Trigger: ATTCCTGCTGGCAAGACCTCACTTCAGACCTCCTCC...CCCCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTC
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp CTTCAATTTCTGTTAATTCCCCCAAAACCACCCTGGGAAGTGACACACTCAAAACTGCAGGCTCAGCCTTaGTGCTGGCAGTACCCACAC +
Preference number: 4 (lower is better)
Translates to: LQFLLIPPKPPWEVTHSKLQAQP*CWQYPH
Trigger: GTGTGGGTACTGCCAGCATCAAGGCTGAGCCTGCAG...TTTTGAGTGTGTCACTTCCCAGGGTGGTTTTGGGGGAATTAACAGAAATTGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000065169.12
ENSMUST00000177851.9
CDS-3UTR GCA 90 bp ATGGTGTTACCTGTGACCTTGATGACCAGAGCCACTGATGTGTTGCCTCTGGGAGTGCTCCACCTTGAGTaGCTTCTTTTGGTTGGATGT +
Preference number: 4 (lower is better)
Translates to: MVLPVTLMTRATDVLPLGVLHLE*LLLVGC
Trigger: ACATCCAACCAAAAGAAGGCACTCAAGGTGGAGCAC...TCCCAGAGGCAACACATCAGTGGCTCTGGTCATCAAGGTCACAGGTAACACCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR GCA 90 bp TCAAAAGGTCTGGTTCGACAAATACAGATGTGTTCTGTGCTTGGCTCCTCCCTTTTCAGGCGACTGGTGTaGTCCACCTTGAGTGCCTTC +
Preference number: 4 (lower is better)
Translates to: SKGLVRQIQMCSVLGSSLFRRLV*STLSAF
Trigger: GAAGGCACTCAAGGTGGAGCACACCAGTCGCCTGAA...AAGGGAGGAGCCAAGCACAGAACACATCTGTATTTGTCGAACCAGACCTTTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR GCA 90 bp GACACACAGCTACTTCTGCCTTTCACCATGGAACCAATTGTTAAGAGAATGGGGGCTGAGGCTGCATTCTaGAGTTTGGGTGACTGGCTG +
Preference number: 4 (lower is better)
Translates to: DTQLLLPFTMEPIVKRMGAEAAF*SLGDWL
Trigger: CAGCCAGTCACCCAAACTGCAGAATGCAGCCTCAGC...CCCCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp TCAAAAGGTCTGGTTCGACAAATACAGATGTGTTCTGTGCTTGGCTCCTCCCTTTTGAGAGCTGGCCTGTaGTCCCAGTTTGGCAGACAC +
Preference number: 4 (lower is better)
Translates to: SKGLVRQIQMCSVLGSSLLRAGL*SQFGRH
Trigger: GTGTCTGCCAAACTGGGACCACAGGCCAGCTCTCAA...AAGGGAGGAGCCAAGCACAGAACACATCTGTATTTGTCGAACCAGACCTTTTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR CCA 90 bp GACACACAGCTACTTCTGCCTTTCACCATGGAACCAATTGTTAAGAGAATGGGGCAGCAGCTGCTGCAGTaGCAGAAATCCTGCCTGCTT +
Preference number: 4 (lower is better)
Translates to: DTQLLLPFTMEPIVKRMGQQLLQ*QKSCLL
Trigger: AAGCAGGCAGGATTTCTGCCACTGCAGCAGCTGCTG...CCCCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GCCCCAATCCCCATACCCTGCACTAGTGTAACTTACACATTGAGGATCAGAAAATTCCATGTGGCTGATTaGGGGATGGAGCGTGGAGGA +
Preference number: 4 (lower is better)
Translates to: APIPIPCTSVTYTLRIRKFHVAD*GMERGG
Trigger: TCCTCCACGCTCCATCCCCCAATCAGCCACATGGAA...TTTTCTGATCCTCAATGTGTAAGTTACACTAGTGCAGGGTATGGGGATTGGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR CAA 72 bp GTCCCTTGTGAGGTGCATAAACTGGGCCTACAAGGGTaGGATGACAGGTGTATGGGAGAAGTCACAAGACTT +
Preference number: 4 (lower is better)
Translates to: VPCEVHKLGLQG*DDRCMGEVTRL
Trigger: AAGTCTTGTGACTTCTCCCATACACCTGTCATCCAACCCTTGTAGGCCCAGTTTATGCACCTCACAAGGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR CAA 72 bp GGATTTAATCCATTCAGGATAGGGATAAAGCCAGCATaGGTGGGGGTGGCAGCTCTGTACACCCCCAAACAT +
Preference number: 4 (lower is better)
Translates to: GFNPFRIGIKPA*VGVAALYTPKH
Trigger: ATGTTTGGGGGTGTACAGAGCTGCCACCCCCACCAATGCTGGCTTTATCCCTATCCTGAATGGATTAAATCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR TCA 90 bp GACACACAGCTACTTCTGCCTTTCACCATGGAACCAATTGTTAAGAGAATGGGGCCTCCTTCAGCTGCTTaGTCATCCGCTCTCGTTCTT +
Preference number: 4 (lower is better)
Translates to: DTQLLLPFTMEPIVKRMGPPSAA*SSALVL
Trigger: AAGAACGAGAGCGGATGATCAAGCAGCTGAAGGAGG...CCCCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR TCA 90 bp TCAAAAGGTCTGGTTCGACAAATACAGATGTGTTCTGTGCTTGGCTCCTCCCTTGTTTGGGTGACTGGCTaGAAGTGTGCAGAACACCAC +
Preference number: 4 (lower is better)
Translates to: SKGLVRQIQMCSVLGSSLVWVTG*KCAEHH
Trigger: GTGGTGTTCTGCACACTTTCAGCCAGTCACCCAAAC...AAGGGAGGAGCCAAGCACAGAACACATCTGTATTTGTCGAACCAGACCTTTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR GCA 90 bp GACACACAGCTACTTCTGCCTTTCACCATGGAACCAATTGTTAAGAGAATGGGGGGTGGGAGTGGAATTTaGCTGAGCAGAAGCAACTGC +
Preference number: 4 (lower is better)
Translates to: DTQLLLPFTMEPIVKRMGGGSGI*LSRSNC
Trigger: GCAGTTGCTTCTGCTCAGGCAAATTCCACTCCCACC...CCCCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTC
49% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp GCCCCAATCCCCATACCCTGCACTAGTGTAACTTACACATTGAGGATCAGAAAACCACACTGGTGGGAGTaGAATTTGCCTGAGCAGAAG +
Preference number: 4 (lower is better)
Translates to: APIPIPCTSVTYTLRIRKPHWWE*NLPEQK
Trigger: CTTCTGCTCAGGCAAATTCCACTCCCACCAGTGTGG...TTTTCTGATCCTCAATGTGTAAGTTACACTAGTGCAGGGTATGGGGATTGGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR CCA 90 bp GACACACAGCTACTTCTGCCTTTCACCATGGAACCAATTGTTAAGAGAATGGGGCCACAGAAGCCACACTaGTGGGAGTGGAATTTGCCT +
Preference number: 4 (lower is better)
Translates to: DTQLLLPFTMEPIVKRMGPQKPH*WEWNLP
Trigger: AGGCAAATTCCACTCCCACCAGTGTGGCTTCTGTGG...CCCCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp AAACTTCAATTTCTGTTAATTCCCCCAAAACCACCCTGGGAAGTGACACACTCAGTGTACTGCCAAGCTTaGGCTGACGAAGGCGAGGGT +
Preference number: 4 (lower is better)
Translates to: KLQFLLIPPKPPWEVTHSVYCQA*ADEGEG
Trigger: ACCCTCGCCTTCGTCAGCCCAAGCTTGGCAGTACAC...TGAGTGTGTCACTTCCCAGGGTGGTTTTGGGGGAATTAACAGAAATTGAAGTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065169.12
ENSMUST00000177851.9
CDS-3UTR CCA 90 bp GCCCCAATCCCCATACCCTGCACTAGTGTAACTTACACATTGAGGATCAGAAAATGGCTGATTGGGGGATaGAGCGTGGAGGAATCATGT +
Preference number: 4 (lower is better)
Translates to: APIPIPCTSVTYTLRIRKWLIGG*SVEESC
Trigger: ACATGATTCCTCCACGCTCCATCCCCCAATCAGCCA...TTTTCTGATCCTCAATGTGTAAGTTACACTAGTGCAGGGTATGGGGATTGGGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR CCA 90 bp AAACTTCAATTTCTGTTAATTCCCCCAAAACCACCCTGGGAAGTGACACACTCATCACCTGCTTCAGCGTaGGATGTGGAGCTGCAGGCT +
Preference number: 4 (lower is better)
Translates to: KLQFLLIPPKPPWEVTHSSPASA*DVELQA
Trigger: AGCCTGCAGCTCCACATCCCACGCTGAAGCAGGTGA...TGAGTGTGTCACTTCCCAGGGTGGTTTTGGGGGAATTAACAGAAATTGAAGTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
3UTR CAA 72 bp CGTTCCAAGGAGCCAGAAGACTTTTGGTCTATGTCATaGCCACTTAGGAAGGGTGGAGAACAGGAACTGACT +
Preference number: 4 (lower is better)
Translates to: RSKEPEDFWSMS*PLRKGGEQELT
Trigger: AGTCAGTTCCTGTTCTCCACCCTTCCTAAGTGGCAATGACATAGACCAAAAGTCTTCTGGCTCCTTGGAACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR TCA 90 bp CTTCAATTTCTGTTAATTCCCCCAAAACCACCCTGGGAAGTGACACACTCAAAAGGAGGAGGTCTGAAGTaGGGTCTTGCCAGCAGGAAT +
Preference number: 4 (lower is better)
Translates to: LQFLLIPPKPPWEVTHSKGGGLK*GLASRN
Trigger: ATTCCTGCTGGCAAGACCTCACTTCAGACCTCCTCC...TTTTGAGTGTGTCACTTCCCAGGGTGGTTTTGGGGGAATTAACAGAAATTGAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000065169.12
ENSMUST00000177851.9
CDS-3UTR TCA 90 bp CTTCAATTTCTGTTAATTCCCCCAAAACCACCCTGGGAAGTGACACACTCAAAAGAGGCTGCAGTAGGCTaGGGGATGTTGACAAGCAGA +
Preference number: 4 (lower is better)
Translates to: LQFLLIPPKPPWEVTHSKEAAVG*GMLTSR
Trigger: TCTGCTTGTCAACATCCCTCAGCCTACTGCAGCCTC...TTTTGAGTGTGTCACTTCCCAGGGTGGTTTTGGGGGAATTAACAGAAATTGAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000065169.12
ENSMUST00000177851.9
CDS-3UTR GCA 90 bp TCACACATCTGTCAAAAGGTCTGGTTCGACAAATACAGATGTGTTCTGTGCTTGCTCTCTCGGAATGTCTaGCAGTCCTGCTTACCAGGG +
Preference number: 4 (lower is better)
Translates to: SHICQKVWFDKYRCVLCLLSRNV*QSCLPG
Trigger: CCCTGGTAAGCAGGACTGGCAGACATTCCGAGAGAG...CAAGCACAGAACACATCTGTATTTGTCGAACCAGACCTTTTGACAGATGTGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR CCA 90 bp CTTCAATTTCTGTTAATTCCCCCAAAACCACCCTGGGAAGTGACACACTCAAAACAGATCCTGTGCCCATaGCCTCTGTTGTCCTCAGCA +
Preference number: 4 (lower is better)
Translates to: LQFLLIPPKPPWEVTHSKQILCP*PLLSSA
Trigger: TGCTGAGGACAACAGAGGCCATGGGCACAGGATCTG...TTTTGAGTGTGTCACTTCCCAGGGTGGTTTTGGGGGAATTAACAGAAATTGAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000065169.12
ENSMUST00000177851.9
CDS-3UTR TCA 90 bp AAACTTCAATTTCTGTTAATTCCCCCAAAACCACCCTGGGAAGTGACACACTCAATGATCCTCTGTCCCTaGATCTGCATGCTGGGCACT +
Preference number: 4 (lower is better)
Translates to: KLQFLLIPPKPPWEVTHSMILCP*ICMLGT
Trigger: AGTGCCCAGCATGCAGATTCAGGGACAGAGGATCAT...TGAGTGTGTCACTTCCCAGGGTGGTTTTGGGGGAATTAACAGAAATTGAAGTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065169.12
ENSMUST00000177851.9
CDS-3UTR TCA 90 bp CTTCAATTTCTGTTAATTCCCCCAAAACCACCCTGGGAAGTGACACACTCAAAAGGAGTGGAATTTGCCTaGGCAGAAGCAACTGCTGTC +
Preference number: 4 (lower is better)
Translates to: LQFLLIPPKPPWEVTHSKGVEFA*AEATAV
Trigger: GACAGCAGTTGCTTCTGCTCAGGCAAATTCCACTCC...TTTTGAGTGTGTCACTTCCCAGGGTGGTTTTGGGGGAATTAACAGAAATTGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000065169.12
ENSMUST00000177851.9
CDS-3UTR TCA 90 bp CTTCAATTTCTGTTAATTCCCCCAAAACCACCCTGGGAAGTGACACACTCAAAATGGTGTGCTCCACCTTaGGTGCCTTCTTTTGGTTGG +
Preference number: 4 (lower is better)
Translates to: LQFLLIPPKPPWEVTHSKWCAPP*VPSFGW
Trigger: CCAACCAAAAGAAGGCACTCAAGGTGGAGCACACCA...TTTTGAGTGTGTCACTTCCCAGGGTGGTTTTGGGGGAATTAACAGAAATTGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000065169.12
ENSMUST00000177851.9
CDS-3UTR GCA 90 bp TCACACATCTGTCAAAAGGTCTGGTTCGACAAATACAGATGTGTTCTGTGCTTGACACGGATAAGTCCCTaGTGGATGATCCTCTGTCCC +
Preference number: 4 (lower is better)
Translates to: SHICQKVWFDKYRCVLCLTRISP*WMILCP
Trigger: GGGACAGAGGATCATCCAGCAGGGACTTATCCGTGT...CAAGCACAGAACACATCTGTATTTGTCGAACCAGACCTTTTGACAGATGTGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR GCA 90 bp AAACTTCAATTTCTGTTAATTCCCCCAAAACCACCCTGGGAAGTGACACACTCATGGAGACTCAGCAGATaGAACCACAGAAGCCACACT +
Preference number: 4 (lower is better)
Translates to: KLQFLLIPPKPPWEVTHSWRLSR*NHRSHT
Trigger: AGTGTGGCTTCTGTGGTTGCATCTGCTGAGTCTCCA...TGAGTGTGTCACTTCCCAGGGTGGTTTTGGGGGAATTAACAGAAATTGAAGTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000065169.12
ENSMUST00000177851.9
CDS-3UTR CCA 90 bp GCCAGGCACAAAAATACTCAAGGACTAAGAAATGCTTGCATATATTCTCTCTCTTTGGGGGATGGAGCGTaGAGGAATCATGTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: ARHKNTQGLRNACIYSLSLGDGA*RNHVQE
Trigger: CTCCTGGACATGATTCCTCCACGCTCCATCCCCCAA...AGAGAGAGAATATATGCAAGCATTTCTTAGTCCTTGAGTATTTTTGTGCCTGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR CCA 90 bp GACACACAGCTACTTCTGCCTTTCACCATGGAACCAATTGTTAAGAGAATGGGGTTGAGTGCCTTCTTTTaGTTGGATGTCATGCAGTTC +
Preference number: 4 (lower is better)
Translates to: DTQLLLPFTMEPIVKRMGLSAFF*LDVMQF
Trigger: GAACTGCATGACATCCAACCAAAAGAAGGCACTCAA...CCCCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CCA 90 bp CTTCAATTTCTGTTAATTCCCCCAAAACCACCCTGGGAAGTGACACACTCAAAATTGAGTGCCTTCTTTTaGTTGGATGTCATGCAGTTC +
Preference number: 4 (lower is better)
Translates to: LQFLLIPPKPPWEVTHSKLSAFF*LDVMQF
Trigger: GAACTGCATGACATCCAACCAAAAGAAGGCACTCAA...TTTTGAGTGTGTCACTTCCCAGGGTGGTTTTGGGGGAATTAACAGAAATTGAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000065169.12
ENSMUST00000177851.9
3UTR CAA 72 bp AACTTACACATTGAGGATCAGAAAACTGACCACTTTTaGGAAACAATCCAAGGTCTTCAGGCTGACATGACT +
Preference number: 4 (lower is better)
Translates to: NLHIEDQKTDHF*ETIQGLQADMT
Trigger: AGTCATGTCAGCCTGAAGACCTTGGATTGTTTCCAAAAAGTGGTCAGTTTTCTGATCCTCAATGTGTAAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR CAA 90 bp CTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGTCACAGTGTCCAGCCTGTGGTCCCAGTTaGGCAGACACCTGCTGCCCA +
Preference number: 5 (lower is better)
Translates to: LNFGSPRCQPGPGVSQCPACGPS*ADTCCP
Trigger: TGGGCAGCAGGTGTCTGCCAAACTGGGACCACAGGC...TGGACACTGTGACACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp CTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGTCACAGTGTCCATTGCGCAGTGCTAGCTaGGCAGCCGCCTGTCGGCTA +
Preference number: 5 (lower is better)
Translates to: LNFGSPRCQPGPGVSQCPLRSAS*AAACRL
Trigger: TAGCCGACAGGCGGCTGCCAAGCTAGCACTGCGCAA...TGGACACTGTGACACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp CGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAGGCGTCTTTTTCCAGTaGGAGGCGGTGCCCTTGCCG +
Preference number: 5 (lower is better)
Translates to: RWPGRAGPKVRVSAGVGQGVFFQ*EAVPLP
Trigger: CGGCAAGGGCACCGCCTCCAACTGGAAAAAGACGCC...TTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp GCTCCCACCCACGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGACAAGCAGACTGGTGTaGGGGACATTGGCGACACGG +
Preference number: 5 (lower is better)
Translates to: APTHAGQAELAPRSEFLLTSRLV*GTLATR
Trigger: CCGTGTCGCCAATGTCCCCAACACCAGTCTGCTTGT...CAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCGTGGGTGGGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS GCA 90 bp GGGTCCCACCTGTGCTCAGAGGCGTCTTTTTCCAGTTGGAGGCGGTaGCCTTGCCGGTGCCCACGACTCTCTCGGAATGTCTGCCAGTCC +
Preference number: 5 (lower is better)
Translates to: GSHLCSEASFSSWRR*PCRCPRLSRNVCQS
Trigger: GGACTGGCAGACATTCCGAGAGAGTCGTGGGCACCGGCAAGGGCACCGCCTCCAACTGGAAAAAGACGCCTCTGAGCACAGGTGGGACCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CCA 90 bp CGAAGGCGAGGGTCCCACCTGTGCTCAGAGGCGTCTTTTTCCAGTTaGAGGCGGTGCCCTTGCCGGTGCCCACGACTCTCTCGGAATGTC +
Preference number: 5 (lower is better)
Translates to: RRRGSHLCSEASFSS*RRCPCRCPRLSRNV
Trigger: GACATTCCGAGAGAGTCGTGGGCACCGGCAAGGGCACCGCCTCCAACTGGAAAAAGACGCCTCTGAGCACAGGTGGGACCCTCGCCTTCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCGCCTGTGGTCCCAGTTaGGCAGACACCTGCTGCCCA +
Preference number: 5 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCACGPS*ADTCCP
Trigger: TGGGCAGCAGGTGTCTGCCAAACTGGGACCACAGGC...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp GACTTCTGGCTGAGAGGCCACCCCGGTGCTGCCGTTCCAAGGAGCCAGAAGACTGCCTGTGGTCCCAGTTaGGCAGACACCTGCTGCCCA +
Preference number: 5 (lower is better)
Translates to: DFWLRGHPGAAVPRSQKTACGPS*ADTCCP
Trigger: TGGGCAGCAGGTGTCTGCCAAACTGGGACCACAGGC...AGTCTTCTGGCTCCTTGGAACGGCAGCACCGGGGTGGCCTCTCAGCCAGAAGTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR CAA 90 bp CGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAACTGGTGTTGGGGACATaGGCGACACGGATAAGTCCC +
Preference number: 5 (lower is better)
Translates to: RWPGRAGPKVRVSAGVGQLVLGT*ATRISP
Trigger: GGGACTTATCCGTGTCGCCAATGTCCCCAACACCAG...TTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCGGCGTCTTTTTCCAGTaGGAGGCGGTGCCCTTGCCG +
Preference number: 5 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCGVFFQ*EAVPLP
Trigger: CGGCAAGGGCACCGCCTCCAACTGGAAAAAGACGCC...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CCA 90 bp CTGTGGTCCCAGTTTGGCAGACACCTGCTGCCCACCTCGGACCAGTaGTGGTGGGATGATGCTGCCGGGTATTCGAGTGGAGGAGGTCTG +
Preference number: 5 (lower is better)
Translates to: LWSQFGRHLLPTSDQ*WWDDAAGYSSGGGL
Trigger: CAGACCTCCTCCACTCGAATACCCGGCAGCATCATCCCACCACCACTGGTCCGAGGTGGGCAGCAGGTGTCTGCCAAACTGGGACCACAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CCA 90 bp GCAGAACACCACGAGGTGCTGTGGCTGAGCCTCGGGACAGCTGGCTaGAAGCCTGTAGTGAGGACCCGTTATTCCAGACACGGGCCTCTC +
Preference number: 5 (lower is better)
Translates to: AEHHEVLWLSLGTAG*KPVVRTRYSRHGPL
Trigger: GAGAGGCCCGTGTCTGGAATAACGGGTCCTCACTACAGGCTTCCAGCCAGCTGTCCCGAGGCTCAGCCACAGCACCTCGTGGTGTTCTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp CTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGTCACAGTGTCCATGGTGGGAGTGGAATTaGCCTGAGCAGAAGCAACTG +
Preference number: 5 (lower is better)
Translates to: LNFGSPRCQPGPGVSQCPWWEWN*PEQKQL
Trigger: CAGTTGCTTCTGCTCAGGCAAATTCCACTCCCACCA...TGGACACTGTGACACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS GCA 90 bp TGCTCAGAGGCGTCTTTTTCCAGTTGGAGGCGGTGCCCTTGCCGGTaGCCACGACTCTCTCGGAATGTCTGCCAGTCCTGCTTACCAGGG +
Preference number: 5 (lower is better)
Translates to: CSEASFSSWRRCPCR*PRLSRNVCQSCLPG
Trigger: CCCTGGTAAGCAGGACTGGCAGACATTCCGAGAGAGTCGTGGGCACCGGCAAGGGCACCGCCTCCAACTGGAAAAAGACGCCTCTGAGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CCA 90 bp TGGTCCCAGTTTGGCAGACACCTGCTGCCCACCTCGGACCAGTGGTaGTGGGATGATGCTGCCGGGTATTCGAGTGGAGGAGGTCTGAAG +
Preference number: 5 (lower is better)
Translates to: WSQFGRHLLPTSDQW*WDDAAGYSSGGGLK
Trigger: CTTCAGACCTCCTCCACTCGAATACCCGGCAGCATCATCCCACCACCACTGGTCCGAGGTGGGCAGCAGGTGTCTGCCAAACTGGGACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp GGCCGCCCGTGCGTGCTGGACACACAGCTACTTCTGCCTTTCACCATGGAACCACGGTGGCATGACTACTaGAGAGCTGGCCTGTGGTCC +
Preference number: 5 (lower is better)
Translates to: GRPCVLDTQLLLPFTMEPRWHDY*RAGLWS
Trigger: GGACCACAGGCCAGCTCTCAAGTAGTCATGCCACCG...TGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTCCAGCACGCACGGGCGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp GGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTACTGGTGTTGGGGACATaGGCGACACGGATAAGTCCC +
Preference number: 5 (lower is better)
Translates to: GQAELAPRSEFLLVSGKLLVLGT*ATRISP
Trigger: GGGACTTATCCGTGTCGCCAATGTCCCCAACACCAG...TAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCCTGGTGTTGGGGACATaGGCGACACGGATAAGTCCC +
Preference number: 5 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCLVLGT*ATRISP
Trigger: GGGACTTATCCGTGTCGCCAATGTCCCCAACACCAG...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp CGCTGGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAATGGTGGGAGTGGAATTaGCCTGAGCAGAAGCAACTG +
Preference number: 5 (lower is better)
Translates to: RWPGRAGPKVRVSAGVGQWWEWN*PEQKQL
Trigger: CAGTTGCTTCTGCTCAGGCAAATTCCACTCCCACCA...TTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCCAGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp TGTGGCTGGGCCCTACCTGGATGGATGCCTCTTGGCAGGCATGGGAATCATGAGGGCGTCTTTTTCCAGTaGGAGGCGGTGCCCTTGCCG +
Preference number: 5 (lower is better)
Translates to: CGWALPGWMPLGRHGNHEGVFFQ*EAVPLP
Trigger: CGGCAAGGGCACCGCCTCCAACTGGAAAAAGACGCC...CTCATGATTCCCATGCCTGCCAAGAGGCATCCATCCAGGTAGGGCCCAGCCACA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS TCA 90 bp GTTTGGCAGACACCTGCTGCCCACCTCGGACCAGTGGTGGTGGGATaGTGCTGCCGGGTATTCGAGTGGAGGAGGTCTGAAGTGAGGTCT +
Preference number: 5 (lower is better)
Translates to: VWQTPAAHLGPVVVG*CCRVFEWRRSEVRS
Trigger: AGACCTCACTTCAGACCTCCTCCACTCGAATACCCGGCAGCATCATCCCACCACCACTGGTCCGAGGTGGGCAGCAGGTGTCTGCCAAAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS TCA 90 bp GTCGATCCACAGCCGAGGAGGTCTTGTGTACTGCCAAGCTTGGGCTaGCGAAGGCGAGGGTCCCACCTGTGCTCAGAGGCGTCTTTTTCC +
Preference number: 5 (lower is better)
Translates to: VDPQPRRSCVLPSLG*RRRGSHLCSEASFS
Trigger: GGAAAAAGACGCCTCTGAGCACAGGTGGGACCCTCGCCTTCGTCAGCCCAAGCTTGGCAGTACACAAGACCTCCTCGGCTGTGGATCGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS GCA 90 bp CTTACGTCGGGGCTTTATGACCTGCTTCAGCGTGGGATGTGGAGCTaGAGGCTCAGCCTTGATGCTGGCAGTACCCACACCCTGCTGCAG +
Preference number: 5 (lower is better)
Translates to: LTSGLYDLLQRGMWS*RLSLDAGSTHTLLQ
Trigger: CTGCAGCAGGGTGTGGGTACTGCCAGCATCAAGGCTGAGCCTGCAGCTCCACATCCCACGCTGAAGCAGGTCATAAAGCCCCGACGTAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000212478.2
CDS GCA 90 bp CACCTGTGCTCAGAGGCGTCTTTTTCCAGTTGGAGGCGGTGCCCTTaGCGGTGCCCACGACTCTCTCGGAATGTCTGCCAGTCCTGCTTA +
Preference number: 5 (lower is better)
Translates to: HLCSEASFSSWRRCP*RCPRLSRNVCQSCL
Trigger: TAAGCAGGACTGGCAGACATTCCGAGAGAGTCGTGGGCACCGGCAAGGGCACCGCCTCCAACTGGAAAAAGACGCCTCTGAGCACAGGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS GCA 90 bp GAGGTATTCTCGCTGTCGATCCACAGCCGAGGAGGTCTTGTGTACTaGCAAGCTTGGGCTGACGAAGGCGAGGGTCCCACCTGTGCTCAG +
Preference number: 5 (lower is better)
Translates to: EVFSLSIHSRGGLVY*QAWADEGEGPTCAQ
Trigger: CTGAGCACAGGTGGGACCCTCGCCTTCGTCAGCCCAAGCTTGGCAGTACACAAGACCTCCTCGGCTGTGGATCGACAGCGAGAATACCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp CAGACAACTAGAGTCAGGGTGGTACCTGCCATCTCTGGTGCCACTCCGAGCATCTTGCGCAGTGCTAGCTaGGCAGCCGCCTGTCGGCTA +
Preference number: 5 (lower is better)
Translates to: QTTRVRVVPAISGATPSILRSAS*AAACRL
Trigger: TAGCCGACAGGCGGCTGCCAAGCTAGCACTGCGCAA...GATGCTCGGAGTGGCACCAGAGATGGCAGGTACCACCCTGACTCTAGTTGTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS TCA 90 bp TGGTGGGATGATGCTGCCGGGTATTCGAGTGGAGGAGGTCTGAAGTaGGGTCTTGCCAGCAGGAATGTTCTGGGTACCCCGCACGAGTGG +
Preference number: 5 (lower is better)
Translates to: WWDDAAGYSSGGGLK*GLASRNVLGTPHEW
Trigger: CCACTCGTGCGGGGTACCCAGAACATTCCTGCTGGCAAGACCTCACTTCAGACCTCCTCCACTCGAATACCCGGCAGCATCATCCCACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS GCA 90 bp GTAGCTGAGGCTGCATTCTGCAGTTTGGGTGACTGGCTGAAAGTGTaGAGAACACCACGAGGTGCTGTGGCTGAGCCTCGGGACAGCTGG +
Preference number: 5 (lower is better)
Translates to: VAEAAFCSLGDWLKV*RTPRGAVAEPRDSW
Trigger: CCAGCTGTCCCGAGGCTCAGCCACAGCACCTCGTGGTGTTCTGCACACTTTCAGCCAGTCACCCAAACTGCAGAATGCAGCCTCAGCTAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp CAGACAACTAGAGTCAGGGTGGTACCTGCCATCTCTGGTGCCACTCCGAGCATCCGGTGGCATGACTACTaGAGAGCTGGCCTGTGGTCC +
Preference number: 5 (lower is better)
Translates to: QTTRVRVVPAISGATPSIRWHDY*RAGLWS
Trigger: GGACCACAGGCCAGCTCTCAAGTAGTCATGCCACCG...GATGCTCGGAGTGGCACCAGAGATGGCAGGTACCACCCTGACTCTAGTTGTCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp AAAGAAAACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCAGAAATCCTGCCTGCTaGTGTCTCCAGCAGGTTCTG +
Preference number: 5 (lower is better)
Translates to: KENEIPAQLREPPVPAWPRNPAC*CLQQVL
Trigger: CAGAACCTGCTGGAGACACAAGCAGGCAGGATTTCT...GGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGTTTTCTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCAGAAATCCTGCCTGCTaGTGTCTCCAGCAGGTTCTG +
Preference number: 5 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCRNPAC*CLQQVL
Trigger: CAGAACCTGCTGGAGACACAAGCAGGCAGGATTTCT...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp CTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCGGGTGTGTCACAGTGTCCAAGTGCCTTCTTTTGGTaGGATGTCATGCAGTTCTCA +
Preference number: 5 (lower is better)
Translates to: LNFGSPRCQPGPGVSQCPSAFFW*DVMQFS
Trigger: TGAGAACTGCATGACATCCAACCAAAAGAAGGCACT...TGGACACTGTGACACACCCGGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp AAAGAAAACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCCTGGTGTGCTCCACCTaGAGTGCCTTCTTTTGGTTG +
Preference number: 5 (lower is better)
Translates to: KENEIPAQLREPPVPAWPLVCST*SAFFWL
Trigger: CAACCAAAAGAAGGCACTCAAGGTGGAGCACACCAG...GGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGTTTTCTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp GACTTCTGGCTGAGAGGCCACCCCGGTGCTGCCGTTCCAAGGAGCCAGAAGACTGCTGCATTCTGCAGTTaGGGTGACTGGCTGAAAGTG +
Preference number: 5 (lower is better)
Translates to: DFWLRGHPGAAVPRSQKTAAFCS*GDWLKV
Trigger: CACTTTCAGCCAGTCACCCAAACTGCAGAATGCAGC...AGTCTTCTGGCTCCTTGGAACGGCAGCACCGGGGTGGCCTCTCAGCCAGAAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS CCA 90 bp CTTACCAGGGCCGTAGCTGAGGCTGCATTCTGCAGTTTGGGTGACTaGCTGAAAGTGTGCAGAACACCACGAGGTGCTGTGGCTGAGCCT +
Preference number: 5 (lower is better)
Translates to: LTRAVAEAAFCSLGD*LKVCRTPRGAVAEP
Trigger: AGGCTCAGCCACAGCACCTCGTGGTGTTCTGCACACTTTCAGCCAGTCACCCAAACTGCAGAATGCAGCCTCAGCTACGGCCCTGGTAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp CTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGCGGTGGCATGACTACTaGAGAGCTGGCCTGTGGTCC +
Preference number: 5 (lower is better)
Translates to: LAPRSEFLLVSGKLKAKRRWHDY*RAGLWS
Trigger: GGACCACAGGCCAGCTCTCAAGTAGTCATGCCACCG...CCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp GAAACCAGGGTTGGATGGGGAAACGACGGCGACCAATCACAAGAGCAGAAGGCCCTGGTGTTGGGGACATaGGCGACACGGATAAGTCCC +
Preference number: 5 (lower is better)
Translates to: ETRVGWGNDGDQSQEQKALVLGT*ATRISP
Trigger: GGGACTTATCCGTGTCGCCAATGTCCCCAACACCAG...GGCCTTCTGCTCTTGTGATTGGTCGCCGTCGTTTCCCCATCCAACCCTGGTTTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp CTAAGTGTGGAAGCCAGGGGTTGCAGTGAGCAGCAACAGACAACTAGAGTCAGGTTGCGCAGTGCTAGCTaGGCAGCCGCCTGTCGGCTA +
Preference number: 5 (lower is better)
Translates to: LSVEARGCSEQQQTTRVRLRSAS*AAACRL
Trigger: TAGCCGACAGGCGGCTGCCAAGCTAGCACTGCGCAA...CCTGACTCTAGTTGTCTGTTGCTGCTCACTGCAACCCCTGGCTTCCACACTTAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS GCA 90 bp TTCAAGGCTACTGTGGTCAGGCCATTCACCCTTGGGCTCGATGGCTaGTCACTGTCAGAGAGCACAATCACATCAGGCGAGGGAGGTCTC +
Preference number: 5 (lower is better)
Translates to: FKATVVRPFTLGLDG*SLSESTITSGEGGL
Trigger: GAGACCTCCCTCGCCTGATGTGATTGTGCTCTCTGACAGTGAGCAGCCATCGAGCCCAAGGGTGAATGGCCTGACCACAGTAGCCTTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212277.2
ENSMUST00000212478.2
CDS GCA 90 bp TGTCTGCCAGTCCTGCTTACCAGGGCCGTAGCTGAGGCTGCATTCTaGAGTTTGGGTGACTGGCTGAAAGTGTGCAGAACACCACGAGGT +
Preference number: 5 (lower is better)
Translates to: CLPVLLTRAVAEAAF*SLGDWLKVCRTPRG
Trigger: ACCTCGTGGTGTTCTGCACACTTTCAGCCAGTCACCCAAACTGCAGAATGCAGCCTCAGCTACGGCCCTGGTAAGCAGGACTGGCAGACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CCA 90 bp GTCTTTCAAGGCTACTGTGGTCAGGCCATTCACCCTTGGGCTCGATaGCTGCTCACTGTCAGAGAGCACAATCACATCAGGCGAGGGAGG +
Preference number: 5 (lower is better)
Translates to: VFQGYCGQAIHPWAR*LLTVREHNHIRRGR
Trigger: CCTCCCTCGCCTGATGTGATTGTGCTCTCTGACAGTGAGCAGCCATCGAGCCCAAGGGTGAATGGCCTGACCACAGTAGCCTTGAAAGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212277.2
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp TGTGGCTGGGCCCTACCTGGATGGATGCCTCTTGGCAGGCATGGGAATCATGAGTCCTCCTTCAGCTGCTaGATCATCCGCTCTCGTTCT +
Preference number: 5 (lower is better)
Translates to: CGWALPGWMPLGRHGNHESSFSC*IIRSRS
Trigger: AGAACGAGAGCGGATGATCAAGCAGCTGAAGGAGGA...CTCATGATTCCCATGCCTGCCAAGAGGCATCCATCCAGGTAGGGCCCAGCCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp GGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGAACGGTGGCATGACTACTaGAGAGCTGGCCTGTGGTCC +
Preference number: 5 (lower is better)
Translates to: GPKVRVSAGVGQTKGKKERWHDY*RAGLWS
Trigger: GGACCACAGGCCAGCTCTCAAGTAGTCATGCCACCG...TTCCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp CTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGACAAGCAGACTGGTGTaGGGGACATTGGCGACACGG +
Preference number: 5 (lower is better)
Translates to: LAPRSEFLLVSGKLKAKRTSRLV*GTLATR
Trigger: CCGTGTCGCCAATGTCCCCAACACCAGTCTGCTTGT...CCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp TGTGGCTGGGCCCTACCTGGATGGATGCCTCTTGGCAGGCATGGGAATCATGAGGCTGCATTCTGCAGTTaGGGTGACTGGCTGAAAGTG +
Preference number: 5 (lower is better)
Translates to: CGWALPGWMPLGRHGNHEAAFCS*GDWLKV
Trigger: CACTTTCAGCCAGTCACCCAAACTGCAGAATGCAGC...CTCATGATTCCCATGCCTGCCAAGAGGCATCCATCCAGGTAGGGCCCAGCCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CCA 90 bp CCTCAGCTCCTCCTTCAGCTGCTTGATCATCCGCTCTCGTTCTTCTaGGCTGCTTTTCAAGAGCGCCTCAGTGCTGGTGTCTTTCAAGGC +
Preference number: 5 (lower is better)
Translates to: PQLLLQLLDHPLSFF*AAFQERLSAGVFQG
Trigger: GCCTTGAAAGACACCAGCACTGAGGCGCTCTTGAAAAGCAGCCCAGAAGAACGAGAGCGGATGATCAAGCAGCTGAAGGAGGAGCTGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212277.2
ENSMUST00000212478.2
CDS CCA 90 bp CTGGAGACTCAGCAGATGCAACCACAGAAGCCACACTGGTGGGAGTaGAATTTGCCTGAGCAGAAGCAACTGCTGTCCCCTTCATGGAGG +
Preference number: 5 (lower is better)
Translates to: LETQQMQPQKPHWWE*NLPEQKQLLSPSWR
Trigger: CCTCCATGAAGGGGACAGCAGTTGCTTCTGCTCAGGCAAATTCCACTCCCACCAGTGTGGCTTCTGTGGTTGCATCTGCTGAGTCTCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CCA 90 bp GCGGCCTTCAGGCGACTGGTGTGCTCCACCTTGAGTGCCTTCTTTTaGTTGGATGTCATGCAGTTCTCACACATAACGGCTCCACCCTTC +
Preference number: 5 (lower is better)
Translates to: AAFRRLVCSTLSAFF*LDVMQFSHITAPPF
Trigger: GAAGGGTGGAGCCGTTATGTGTGAGAACTGCATGACATCCAACCAAAAGAAGGCACTCAAGGTGGAGCACACCAGTCGCCTGAAGGCCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp CAGACAACTAGAGTCAGGGTGGTACCTGCCATCTCTGGTGCCACTCCGAGCATCTCCTCCTTCAGCTGCTaGATCATCCGCTCTCGTTCT +
Preference number: 5 (lower is better)
Translates to: QTTRVRVVPAISGATPSISSFSC*IIRSRS
Trigger: AGAACGAGAGCGGATGATCAAGCAGCTGAAGGAGGA...GATGCTCGGAGTGGCACCAGAGATGGCAGGTACCACCCTGACTCTAGTTGTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp CAGACAACTAGAGTCAGGGTGGTACCTGCCATCTCTGGTGCCACTCCGAGCATCTGGTGGGAGTGGAATTaGCCTGAGCAGAAGCAACTG +
Preference number: 5 (lower is better)
Translates to: QTTRVRVVPAISGATPSIWWEWN*PEQKQL
Trigger: CAGTTGCTTCTGCTCAGGCAAATTCCACTCCCACCA...GATGCTCGGAGTGGCACCAGAGATGGCAGGTACCACCCTGACTCTAGTTGTCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp GCTCTGCTGACTCCAGACCTAAGGGCTGTGGCTGGGCCCTACCTGGATGGATGCAGTGCCTTCTTTTGGTaGGATGTCATGCAGTTCTCA +
Preference number: 5 (lower is better)
Translates to: ALLTPDLRAVAGPYLDGCSAFFW*DVMQFS
Trigger: TGAGAACTGCATGACATCCAACCAAAAGAAGGCACT...GCATCCATCCAGGTAGGGCCCAGCCACAGCCCTTAGGTCTGGAGTCAGCAGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp AAAGAAAACGAAATCCCGGCTCAACTTCGGGAGCCCCCGGTGCCAGCCTGGCCCCTTGAGTGCCTTCTTTaGGTTGGATGTCATGCAGTT +
Preference number: 5 (lower is better)
Translates to: KENEIPAQLREPPVPAWPLECLL*VGCHAV
Trigger: AACTGCATGACATCCAACCAAAAGAAGGCACTCAAG...GGGCCAGGCTGGCACCGGGGGCTCCCGAAGTTGAGCCGGGATTTCGTTTTCTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp GGCCAGGCAGAGCTGGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTACTTGAGTGCCTTCTTTaGGTTGGATGTCATGCAGTT +
Preference number: 5 (lower is better)
Translates to: GQAELAPRSEFLLVSGKLLECLL*VGCHAV
Trigger: AACTGCATGACATCCAACCAAAAGAAGGCACTCAAG...TAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCCAGCTCTGCCTGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp CAGACAACTAGAGTCAGGGTGGTACCTGCCATCTCTGGTGCCACTCCGAGCATCCTGGTGTGCTCCACCTaGAGTGCCTTCTTTTGGTTG +
Preference number: 5 (lower is better)
Translates to: QTTRVRVVPAISGATPSILVCST*SAFFWL
Trigger: CAACCAAAAGAAGGCACTCAAGGTGGAGCACACCAG...GATGCTCGGAGTGGCACCAGAGATGGCAGGTACCACCCTGACTCTAGTTGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp GAAACCAGGGTTGGATGGGGAAACGACGGCGACCAATCACAAGAGCAGAAGGCCCTGGTGTGCTCCACCTaGAGTGCCTTCTTTTGGTTG +
Preference number: 5 (lower is better)
Translates to: ETRVGWGNDGDQSQEQKALVCST*SAFFWL
Trigger: CAACCAAAAGAAGGCACTCAAGGTGGAGCACACCAG...GGCCTTCTGCTCTTGTGATTGGTCGCCGTCGTTTCCCCATCCAACCCTGGTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp AGCAACCAGCTCTGGCTCCAGCACAGTGGACTCAGCATCTCTCTGGAGCCTCTAGCTGCATTCTGCAGTTaGGGTGACTGGCTGAAAGTG +
Preference number: 5 (lower is better)
Translates to: SNQLWLQHSGLSISLEPLAAFCS*GDWLKV
Trigger: CACTTTCAGCCAGTCACCCAAACTGCAGAATGCAGC...TAGAGGCTCCAGAGAGATGCTGAGTCCACTGTGCTGGAGCCAGAGCTGGTTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS GCA 90 bp TCATCCGCTCTCGTTCTTCTGGGCTGCTTTTCAAGAGCGCCTCAGTaGTGGTGTCTTTCAAGGCTACTGTGGTCAGGCCATTCACCCTTG +
Preference number: 5 (lower is better)
Translates to: SSALVLLGCFSRAPQ*WCLSRLLWSGHSPL
Trigger: CAAGGGTGAATGGCCTGACCACAGTAGCCTTGAAAGACACCAGCACTGAGGCGCTCTTGAAAAGCAGCCCAGAAGAACGAGAGCGGATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212277.2
ENSMUST00000212478.2
CDS CCA 90 bp AGTGCTGGTGTCTTTCAAGGCTACTGTGGTCAGGCCATTCACCCTTaGGCTCGATGGCTGCTCACTGTCAGAGAGCACAATCACATCAGG +
Preference number: 5 (lower is better)
Translates to: SAGVFQGYCGQAIHP*ARWLLTVREHNHIR
Trigger: CCTGATGTGATTGTGCTCTCTGACAGTGAGCAGCCATCGAGCCCAAGGGTGAATGGCCTGACCACAGTAGCCTTGAAAGACACCAGCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212277.2
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp CCACCCCGGTGCTGCCGTTCCAAGGAGCCAGAAGACTTTTGGTCTATGTCATTGTGGTGGGAGTGGAATTaGCCTGAGCAGAAGCAACTG +
Preference number: 5 (lower is better)
Translates to: PPRCCRSKEPEDFWSMSLWWEWN*PEQKQL
Trigger: CAGTTGCTTCTGCTCAGGCAAATTCCACTCCCACCA...CAATGACATAGACCAAAAGTCTTCTGGCTCCTTGGAACGGCAGCACCGGGGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS GCA 90 bp CTTCACAAAGGCGGCCTTCAGGCGACTGGTGTGCTCCACCTTGAGTaGCTTCTTTTGGTTGGATGTCATGCAGTTCTCACACATAACGGC +
Preference number: 5 (lower is better)
Translates to: LHKGGLQATGVLHLE*LLLVGCHAVLTHNG
Trigger: GCCGTTATGTGTGAGAACTGCATGACATCCAACCAAAAGAAGGCACTCAAGGTGGAGCACACCAGTCGCCTGAAGGCCGCCTTTGTGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS GCA 90 bp TCTTGCTGTAGAGCCTTCACAAAGGCGGCCTTCAGGCGACTGGTGTaGTCCACCTTGAGTGCCTTCTTTTGGTTGGATGTCATGCAGTTC +
Preference number: 5 (lower is better)
Translates to: SCCRAFTKAAFRRLV*STLSAFFWLDVMQF
Trigger: GAACTGCATGACATCCAACCAAAAGAAGGCACTCAAGGTGGAGCACACCAGTCGCCTGAAGGCCGCCTTTGTGAAGGCTCTACAGCAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp GCCCCAATCCCCATACCCTGCACTAGTGTAACTTACACATTGAGGATCAGAAAATTGCGCAGTGCTAGCTaGGCAGCCGCCTGTCGGCTA +
Preference number: 5 (lower is better)
Translates to: APIPIPCTSVTYTLRIRKLRSAS*AAACRL
Trigger: TAGCCGACAGGCGGCTGCCAAGCTAGCACTGCGCAA...TTTTCTGATCCTCAATGTGTAAGTTACACTAGTGCAGGGTATGGGGATTGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR CAA 90 bp AGCAACCAGCTCTGGCTCCAGCACAGTGGACTCAGCATCTCTCTGGAGCCTCTAAGTGCCTTCTTTTGGTaGGATGTCATGCAGTTCTCA +
Preference number: 5 (lower is better)
Translates to: SNQLWLQHSGLSISLEPLSAFFW*DVMQFS
Trigger: TGAGAACTGCATGACATCCAACCAAAAGAAGGCACT...TAGAGGCTCCAGAGAGATGCTGAGTCCACTGTGCTGGAGCCAGAGCTGGTTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp CTTCAATTTCTGTTAATTCCCCCAAAACCACCCTGGGAAGTGACACACTCAAAAGCCTGTGGTCCCAGTTaGGCAGACACCTGCTGCCCA +
Preference number: 5 (lower is better)
Translates to: LQFLLIPPKPPWEVTHSKACGPS*ADTCCP
Trigger: TGGGCAGCAGGTGTCTGCCAAACTGGGACCACAGGC...TTTTGAGTGTGTCACTTCCCAGGGTGGTTTTGGGGGAATTAACAGAAATTGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000065169.12
ENSMUST00000177851.9
CDS-3UTR CAA 90 bp GACACACAGCTACTTCTGCCTTTCACCATGGAACCAATTGTTAAGAGAATGGGGACAAGCAGACTGGTGTaGGGGACATTGGCGACACGG +
Preference number: 5 (lower is better)
Translates to: DTQLLLPFTMEPIVKRMGTSRLV*GTLATR
Trigger: CCGTGTCGCCAATGTCCCCAACACCAGTCTGCTTGT...CCCCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp CCACCCCGGTGCTGCCGTTCCAAGGAGCCAGAAGACTTTTGGTCTATGTCATTGCTTGAGTGCCTTCTTTaGGTTGGATGTCATGCAGTT +
Preference number: 5 (lower is better)
Translates to: PPRCCRSKEPEDFWSMSLLECLL*VGCHAV
Trigger: AACTGCATGACATCCAACCAAAAGAAGGCACTCAAG...CAATGACATAGACCAAAAGTCTTCTGGCTCCTTGGAACGGCAGCACCGGGGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR CAA 90 bp CTTCAATTTCTGTTAATTCCCCCAAAACCACCCTGGGAAGTGACACACTCAAAAGGCGTCTTTTTCCAGTaGGAGGCGGTGCCCTTGCCG +
Preference number: 5 (lower is better)
Translates to: LQFLLIPPKPPWEVTHSKGVFFQ*EAVPLP
Trigger: CGGCAAGGGCACCGCCTCCAACTGGAAAAAGACGCC...TTTTGAGTGTGTCACTTCCCAGGGTGGTTTTGGGGGAATTAACAGAAATTGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000065169.12
ENSMUST00000177851.9
CDS-3UTR CAA 90 bp AGCAACCAGCTCTGGCTCCAGCACAGTGGACTCAGCATCTCTCTGGAGCCTCTATCCATTTTCATTTTCTaGTTCTCCACATCATCCTCC +
Preference number: 5 (lower is better)
Translates to: SNQLWLQHSGLSISLEPLSIFIF*FSTSSS
Trigger: GGAGGATGATGTGGAGAACAAGAAAATGAAAATGGA...TAGAGGCTCCAGAGAGATGCTGAGTCCACTGTGCTGGAGCCAGAGCTGGTTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp GGCCCCAAGGTCCGAGTTTCTGCTGGTGTCGGGCAAACTAAAGGCAAAAAGGAACTTGAGTGCCTTCTTTaGGTTGGATGTCATGCAGTT +
Preference number: 5 (lower is better)
Translates to: GPKVRVSAGVGQTKGKKELECLL*VGCHAV
Trigger: AACTGCATGACATCCAACCAAAAGAAGGCACTCAAG...TTCCTTTTTGCCTTTAGTTTGCCCGACACCAGCAGAAACTCGGACCTTGGGGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp CTTCAATTTCTGTTAATTCCCCCAAAACCACCCTGGGAAGTGACACACTCAAAAACAAGCAGACTGGTGTaGGGGACATTGGCGACACGG +
Preference number: 5 (lower is better)
Translates to: LQFLLIPPKPPWEVTHSKTSRLV*GTLATR
Trigger: CCGTGTCGCCAATGTCCCCAACACCAGTCTGCTTGT...TTTTGAGTGTGTCACTTCCCAGGGTGGTTTTGGGGGAATTAACAGAAATTGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000065169.12
ENSMUST00000177851.9
CDS-3UTR CAA 90 bp GCCCCAATCCCCATACCCTGCACTAGTGTAACTTACACATTGAGGATCAGAAAACTGGTGTGCTCCACCTaGAGTGCCTTCTTTTGGTTG +
Preference number: 5 (lower is better)
Translates to: APIPIPCTSVTYTLRIRKLVCST*SAFFWL
Trigger: CAACCAAAAGAAGGCACTCAAGGTGGAGCACACCAG...TTTTCTGATCCTCAATGTGTAAGTTACACTAGTGCAGGGTATGGGGATTGGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR CAA 90 bp GACACACAGCTACTTCTGCCTTTCACCATGGAACCAATTGTTAAGAGAATGGGGGCTGCATTCTGCAGTTaGGGTGACTGGCTGAAAGTG +
Preference number: 5 (lower is better)
Translates to: DTQLLLPFTMEPIVKRMGAAFCS*GDWLKV
Trigger: CACTTTCAGCCAGTCACCCAAACTGCAGAATGCAGC...CCCCATTCTCTTAACAATTGGTTCCATGGTGAAAGGCAGAAGTAGCTGTGTGTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp CTAAGTGTGGAAGCCAGGGGTTGCAGTGAGCAGCAACAGACAACTAGAGTCAGGTCCATTTTCATTTTCTaGTTCTCCACATCATCCTCC +
Preference number: 5 (lower is better)
Translates to: LSVEARGCSEQQQTTRVRSIFIF*FSTSSS
Trigger: GGAGGATGATGTGGAGAACAAGAAAATGAAAATGGA...CCTGACTCTAGTTGTCTGTTGCTGCTCACTGCAACCCCTGGCTTCCACACTTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS-3UTR CAA 90 bp TCACACATCTGTCAAAAGGTCTGGTTCGACAAATACAGATGTGTTCTGTGCTTGTCCTCCTTCAGCTGCTaGATCATCCGCTCTCGTTCT +
Preference number: 5 (lower is better)
Translates to: SHICQKVWFDKYRCVLCLSSFSC*IIRSRS
Trigger: AGAACGAGAGCGGATGATCAAGCAGCTGAAGGAGGA...CAAGCACAGAACACATCTGTATTTGTCGAACCAGACCTTTTGACAGATGTGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS-3UTR CAA 90 bp TCACACATCTGTCAAAAGGTCTGGTTCGACAAATACAGATGTGTTCTGTGCTTGAGTGCCTTCTTTTGGTaGGATGTCATGCAGTTCTCA +
Preference number: 5 (lower is better)
Translates to: SHICQKVWFDKYRCVLCLSAFFW*DVMQFS
Trigger: TGAGAACTGCATGACATCCAACCAAAAGAAGGCACT...CAAGCACAGAACACATCTGTATTTGTCGAACCAGACCTTTTGACAGATGTGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS CCA 72 bp CACGAGGTGCTGTGGCTGAGCCTCGGGACAGCTGGCTaGAAGCGGCAAGGGCTCCAGCTCTCACCTGCTTCA +
Preference number: 6 (lower is better)
Translates to: HEVLWLSLGTAG*KRQGLQLSPAS
Trigger: TGAAGCAGGTGAGAGCTGGAGCCCTTGCCGCTTCCAGCCAGCTGTCCCGAGGCTCAGCCACAGCACCTCGTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS CAA 90 bp CGTCTCCTAACAGCCCCTCGCCAGATCCTGTGCCCATGGCCTCTGTaGTCCTCAGCAACCCCTGGGCTGAGCCTGCACTCGGCTCTGGCA +
Preference number: 6 (lower is better)
Translates to: RLLTAPRQILCPWPL*SSATPGLSLHSALA
Trigger: TGCCAGAGCCGAGTGCAGGCTCAGCCCAGGGGTTGCTGAGGACAACAGAGGCCATGGGCACAGGATCTGGCGAGGGGCTGTTAGGAGACG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000211960.2
ENSMUST00000212277.2
ENSMUST00000212478.2
CDS TCA 72 bp GCTGAAAGTGTGCAGAACACCACGAGGTGCTGTGGCTaGGCCTCGGGACAGCTGGCTGGAAGCGGCAAGGGC +
Preference number: 6 (lower is better)
Translates to: AESVQNTTRCCG*ASGQLAGSGKG
Trigger: GCCCTTGCCGCTTCCAGCCAGCTGTCCCGAGGCTCAGCCACAGCACCTCGTGGTGTTCTGCACACTTTCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000177851.9
CDS GCA 72 bp GAGCTGGCCTGTGGTCCCAGTTTGGCAGACACCTGCTaGCCACCTCGGACCAGTGGTGGTGGGATGATGCTG +
Preference number: 6 (lower is better)
Translates to: ELACGPSLADTC*PPRTSGGGMML
Trigger: CAGCATCATCCCACCACCACTGGTCCGAGGTGGGCAGCAGGTGTCTGCCAAACTGGGACCACAGGCCAGCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CCA 72 bp GGGTCCCACCTGTGCTCAGAGGCGTCTTTTTCCAGTTaGAGGCGGTGCCCTTGCCGGTGCCCACGACTCTCT +
Preference number: 6 (lower is better)
Translates to: GSHLCSEASFSS*RRCPCRCPRLS
Trigger: AGAGAGTCGTGGGCACCGGCAAGGGCACCGCCTCCAACTGGAAAAAGACGCCTCTGAGCACAGGTGGGACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS GCA 72 bp CCTGGGCTGAGCCTGCACTCGGCTCTGGCATCACCCTaGTGTCTCCGTCCACTGTCAGCTCTGATGACCCTT +
Preference number: 6 (lower is better)
Translates to: PGLSLHSALASP*CLRPLSALMTL
Trigger: AAGGGTCATCAGAGCTGACAGTGGACGGAGACAGCAGGGTGATGCCAGAGCCGAGTGCAGGCTCAGCCCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000211960.2
ENSMUST00000212277.2
ENSMUST00000212478.2
CDS GCA 72 bp CCCTGCTGCAGCAGGCGCTGCTCCATCTCCTGCTCTTaGTGTAGAGCCTTCACAAAGGCGGCCTTCAGGCGA +
Preference number: 6 (lower is better)
Translates to: PCCSRRCSISCS*CRAFTKAAFRR
Trigger: TCGCCTGAAGGCCGCCTTTGTGAAGGCTCTACAGCAAGAGCAGGAGATGGAGCAGCGCCTGCTGCAGCAGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS GCA 72 bp GCGTCTTTTTCCAGTTGGAGGCGGTGCCCTTGCCGGTaGCCACGACTCTCTCGGAATGTCTGCCAGTCCTGC +
Preference number: 6 (lower is better)
Translates to: ASFSSWRRCPCR*PRLSRNVCQSC
Trigger: GCAGGACTGGCAGACATTCCGAGAGAGTCGTGGGCACCGGCAAGGGCACCGCCTCCAACTGGAAAAAGACGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS GCA 72 bp TCGCTGTCGATCCACAGCCGAGGAGGTCTTGTGTACTaGCAAGCTTGGGCTGACGAAGGCGAGGGTCCCACC +
Preference number: 6 (lower is better)
Translates to: SLSIHSRGGLVY*QAWADEGEGPT
Trigger: GGTGGGACCCTCGCCTTCGTCAGCCCAAGCTTGGCAGTACACAAGACCTCCTCGGCTGTGGATCGACAGCGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CAA 90 bp CCACCTGTGCTCAGAGGCGTCTTTTTCCAGTTGGAGGCGGTGCCCTaGCCGGTGCCCACGACTCTCTCGGAATGTCTGCCAGTCCTGCTT +
Preference number: 6 (lower is better)
Translates to: PPVLRGVFFQLEAVP*PVPTTLSECLPVLL
Trigger: AAGCAGGACTGGCAGACATTCCGAGAGAGTCGTGGGCACCGGCAAGGGCACCGCCTCCAACTGGAAAAAGACGCCTCTGAGCACAGGTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS TCA 72 bp ACACCTGCTGCCCACCTCGGACCAGTGGTGGTGGGATaGTGCTGCCGGGTATTCGAGTGGAGGAGGTCTGAA +
Preference number: 6 (lower is better)
Translates to: TPAAHLGPVVVG*CCRVFEWRRSE
Trigger: TTCAGACCTCCTCCACTCGAATACCCGGCAGCATCATCCCACCACCACTGGTCCGAGGTGGGCAGCAGGTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS GCA 72 bp TCAGAGGCGTCTTTTTCCAGTTGGAGGCGGTGCCCTTaGCGGTGCCCACGACTCTCTCGGAATGTCTGCCAG +
Preference number: 6 (lower is better)
Translates to: SEASFSSWRRCP*RCPRLSRNVCQ
Trigger: CTGGCAGACATTCCGAGAGAGTCGTGGGCACCGGCAAGGGCACCGCCTCCAACTGGAAAAAGACGCCTCTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS GCA 72 bp CTGTGCTCAGAGGCGTCTTTTTCCAGTTGGAGGCGGTaGCCTTGCCGGTGCCCACGACTCTCTCGGAATGTC +
Preference number: 6 (lower is better)
Translates to: LCSEASFSSWRR*PCRCPRLSRNV
Trigger: GACATTCCGAGAGAGTCGTGGGCACCGGCAAGGGCACCGCCTCCAACTGGAAAAAGACGCCTCTGAGCACAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CCA 72 bp GACAAGCGGTGGCATGACTACTTGAGAGCTGGCCTGTaGTCCCAGTTTGGCAGACACCTGCTGCCCACCTCG +
Preference number: 6 (lower is better)
Translates to: DKRWHDYLRAGL*SQFGRHLLPTS
Trigger: CGAGGTGGGCAGCAGGTGTCTGCCAAACTGGGACCACAGGCCAGCTCTCAAGTAGTCATGCCACCGCTTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CCA 72 bp ACACCACGAGGTGCTGTGGCTGAGCCTCGGGACAGCTaGCTGGAAGCCTGTAGTGAGGACCCGTTATTCCAG +
Preference number: 6 (lower is better)
Translates to: TPRGAVAEPRDS*LEACSEDPLFQ
Trigger: CTGGAATAACGGGTCCTCACTACAGGCTTCCAGCCAGCTGTCCCGAGGCTCAGCCACAGCACCTCGTGGTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000212478.2
CDS CCA 72 bp ATCCACAGCCGAGGAGGTCTTGTGTACTGCCAAGCTTaGGCTGACGAAGGCGAGGGTCCCACCTGTGCTCAG +
Preference number: 6 (lower is better)
Translates to: IHSRGGLVYCQA*ADEGEGPTCAQ
Trigger: CTGAGCACAGGTGGGACCCTCGCCTTCGTCAGCCCAAGCTTGGCAGTACACAAGACCTCCTCGGCTGTGGAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CAA 72 bp AGCAGTGTCTTCTCCAGCTGCTTGCGCAGTGCTAGCTaGGCAGCCGCCTGTCGGCTAGCTGGAGACTCAGCA +
Preference number: 6 (lower is better)
Translates to: SSVFSSCLRSAS*AAACRLAGDSA
Trigger: TGCTGAGTCTCCAGCTAGCCGACAGGCGGCTGCCAAGCTAGCACTGCGCAAGCAGCTGGAGAAGACACTGCT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CAA 72 bp CTCAGAGGCGTCTTTTTCCAGTTGGAGGCGGTGCCCTaGCCGGTGCCCACGACTCTCTCGGAATGTCTGCCA +
Preference number: 6 (lower is better)
Translates to: LRGVFFQLEAVP*PVPTTLSECLP
Trigger: TGGCAGACATTCCGAGAGAGTCGTGGGCACCGGCAAGGGCACCGCCTCCAACTGGAAAAAGACGCCTCTGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS TCA 72 bp CTCCTGAGCGGAACGCCAACTTACGTCGGGGCTTTATaGCCTGCTTCAGCGTGGGATGTGGAGCTGCAGGCT +
Preference number: 6 (lower is better)
Translates to: LLSGTPTYVGAL*PASAWDVELQA
Trigger: AGCCTGCAGCTCCACATCCCACGCTGAAGCAGGTCATAAAGCCCCGACGTAAGTTGGCGTTCCGCTCAGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000212478.2
CDS CCA 72 bp ACGTCGGGGCTTTATGACCTGCTTCAGCGTGGGATGTaGAGCTGCAGGCTCAGCCTTGATGCTGGCAGTACC +
Preference number: 6 (lower is better)
Translates to: TSGLYDLLQRGM*SCRLSLDAGST
Trigger: GGTACTGCCAGCATCAAGGCTGAGCCTGCAGCTCCACATCCCACGCTGAAGCAGGTCATAAAGCCCCGACGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000212478.2
CDS CAA 90 bp ATGTCCAGGAGGTATTCTCGCTGTCGATCCACAGCCGAGGAGGTCTaGTGTACTGCCAAGCTTGGGCTGACGAAGGCGAGGGTCCCACCT +
Preference number: 6 (lower is better)
Translates to: MSRRYSRCRSTAEEV*CTAKLGLTKARVPP
Trigger: AGGTGGGACCCTCGCCTTCGTCAGCCCAAGCTTGGCAGTACACAAGACCTCCTCGGCTGTGGATCGACAGCGAGAATACCTCCTGGACAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CAA 90 bp CCAGTCCTGCTTACCAGGGCCGTAGCTGAGGCTGCATTCTGCAGTTaGGGTGACTGGCTGAAAGTGTGCAGAACACCACGAGGTGCTGTG +
Preference number: 6 (lower is better)
Translates to: PVLLTRAVAEAAFCS*GDWLKVCRTPRGAV
Trigger: CACAGCACCTCGTGGTGTTCTGCACACTTTCAGCCAGTCACCCAAACTGCAGAATGCAGCCTCAGCTACGGCCCTGGTAAGCAGGACTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS TCA 72 bp GATGCTGCCGGGTATTCGAGTGGAGGAGGTCTGAAGTaGGGTCTTGCCAGCAGGAATGTTCTGGGTACCCCG +
Preference number: 6 (lower is better)
Translates to: DAAGYSSGGGLK*GLASRNVLGTP
Trigger: CGGGGTACCCAGAACATTCCTGCTGGCAAGACCTCACTTCAGACCTCCTCCACTCGAATACCCGGCAGCATC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS GCA 72 bp GCTGCATTCTGCAGTTTGGGTGACTGGCTGAAAGTGTaGAGAACACCACGAGGTGCTGTGGCTGAGCCTCGG +
Preference number: 6 (lower is better)
Translates to: AAFCSLGDWLKV*RTPRGAVAEPR
Trigger: CCGAGGCTCAGCCACAGCACCTCGTGGTGTTCTGCACACTTTCAGCCAGTCACCCAAACTGCAGAATGCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CCA 72 bp AGAGCGCCTCAGTGCTGGTGTCTTTCAAGGCTACTGTaGTCAGGCCATTCACCCTTGGGCTCGATGGCTGCT +
Preference number: 6 (lower is better)
Translates to: RAPQCWCLSRLL*SGHSPLGSMAA
Trigger: AGCAGCCATCGAGCCCAAGGGTGAATGGCCTGACCACAGTAGCCTTGAAAGACACCAGCACTGAGGCGCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212277.2
ENSMUST00000212478.2
CDS CAA 72 bp AGGTATTCTCGCTGTCGATCCACAGCCGAGGAGGTCTaGTGTACTGCCAAGCTTGGGCTGACGAAGGCGAGG +
Preference number: 6 (lower is better)
Translates to: RYSRCRSTAEEV*CTAKLGLTKAR
Trigger: CCTCGCCTTCGTCAGCCCAAGCTTGGCAGTACACAAGACCTCCTCGGCTGTGGATCGACAGCGAGAATACCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS GCA 72 bp ACTGTGGTCAGGCCATTCACCCTTGGGCTCGATGGCTaGTCACTGTCAGAGAGCACAATCACATCAGGCGAG +
Preference number: 6 (lower is better)
Translates to: TVVRPFTLGLDG*SLSESTITSGE
Trigger: CTCGCCTGATGTGATTGTGCTCTCTGACAGTGAGCAGCCATCGAGCCCAAGGGTGAATGGCCTGACCACAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212277.2
ENSMUST00000212478.2
CDS GCA 72 bp ACTGGTGGGAGTGGAATTTGCCTGAGCAGAAGCAACTaGTGTCCCCTTCATGGAGGCTGCAGTAGGCTGAGG +
Preference number: 6 (lower is better)
Translates to: TGGSGICLSRSN*CPLHGGCSRLR
Trigger: CCTCAGCCTACTGCAGCCTCCATGAAGGGGACAGCAGTTGCTTCTGCTCAGGCAAATTCCACTCCCACCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CCA 72 bp GGCTACTGTGGTCAGGCCATTCACCCTTGGGCTCGATaGCTGCTCACTGTCAGAGAGCACAATCACATCAGG +
Preference number: 6 (lower is better)
Translates to: GYCGQAIHPWAR*LLTVREHNHIR
Trigger: CCTGATGTGATTGTGCTCTCTGACAGTGAGCAGCCATCGAGCCCAAGGGTGAATGGCCTGACCACAGTAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212277.2
ENSMUST00000212478.2
CDS CCA 72 bp GCCGTAGCTGAGGCTGCATTCTGCAGTTTGGGTGACTaGCTGAAAGTGTGCAGAACACCACGAGGTGCTGTG +
Preference number: 6 (lower is better)
Translates to: AVAEAAFCSLGD*LKVCRTPRGAV
Trigger: CACAGCACCTCGTGGTGTTCTGCACACTTTCAGCCAGTCACCCAAACTGCAGAATGCAGCCTCAGCTACGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CAA 90 bp GGCGGCCTTCAGGCGACTGGTGTGCTCCACCTTGAGTGCCTTCTTTaGGTTGGATGTCATGCAGTTCTCACACATAACGGCTCCACCCTT +
Preference number: 6 (lower is better)
Translates to: GGLQATGVLHLECLL*VGCHAVLTHNGSTL
Trigger: AAGGGTGGAGCCGTTATGTGTGAGAACTGCATGACATCCAACCAAAAGAAGGCACTCAAGGTGGAGCACACCAGTCGCCTGAAGGCCGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS TCA 72 bp GGGATGATGCTGCCGGGTATTCGAGTGGAGGAGGTCTaGAGTGAGGTCTTGCCAGCAGGAATGTTCTGGGTA +
Preference number: 6 (lower is better)
Translates to: GMMLPGIRVEEV*SEVLPAGMFWV
Trigger: TACCCAGAACATTCCTGCTGGCAAGACCTCACTTCAGACCTCCTCCACTCGAATACCCGGCAGCATCATCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS GCA 72 bp TCTCCACATCATCCTCCGTTAGGTCAGGTTCAAGGGTaGGCTTCTGACTGCGGGTTCGGCATGCTTCTTCAC +
Preference number: 6 (lower is better)
Translates to: SPHHPPLGQVQG*ASDCGFGMLLH
Trigger: GTGAAGAAGCATGCCGAACCCGCAGTCAGAAGCGCACCCTTGAACCTGACCTAACGGAGGATGATGTGGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000211960.2
ENSMUST00000212277.2
ENSMUST00000212478.2
CDS GCA 72 bp CTGAGCAGAAGCAACTGCTGTCCCCTTCATGGAGGCTaGAGTAGGCTGAGGGATGTTGACAAGCAGACTGGT +
Preference number: 6 (lower is better)
Translates to: LSRSNCCPLHGG*SRLRDVDKQTG
Trigger: ACCAGTCTGCTTGTCAACATCCCTCAGCCTACTGCAGCCTCCATGAAGGGGACAGCAGTTGCTTCTGCTCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS GCA 72 bp GGCGGCCTTCAGGCGACTGGTGTGCTCCACCTTGAGTaGCTTCTTTTGGTTGGATGTCATGCAGTTCTCACA +
Preference number: 6 (lower is better)
Translates to: GGLQATGVLHLE*LLLVGCHAVLT
Trigger: TGTGAGAACTGCATGACATCCAACCAAAAGAAGGCACTCAAGGTGGAGCACACCAGTCGCCTGAAGGCCGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS GCA 72 bp AGAGCCTTCACAAAGGCGGCCTTCAGGCGACTGGTGTaGTCCACCTTGAGTGCCTTCTTTTGGTTGGATGTC +
Preference number: 6 (lower is better)
Translates to: RAFTKAAFRRLV*STLSAFFWLDV
Trigger: GACATCCAACCAAAAGAAGGCACTCAAGGTGGAGCACACCAGTCGCCTGAAGGCCGCCTTTGTGAAGGCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS GCA 72 bp GTCCTGCTTACCAGGGCCGTAGCTGAGGCTGCATTCTaGAGTTTGGGTGACTGGCTGAAAGTGTGCAGAACA +
Preference number: 6 (lower is better)
Translates to: VLLTRAVAEAAF*SLGDWLKVCRT
Trigger: TGTTCTGCACACTTTCAGCCAGTCACCCAAACTGCAGAATGCAGCCTCAGCTACGGCCCTGGTAAGCAGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CCA 72 bp CAGCAGATGCAACCACAGAAGCCACACTGGTGGGAGTaGAATTTGCCTGAGCAGAAGCAACTGCTGTCCCCT +
Preference number: 6 (lower is better)
Translates to: QQMQPQKPHWWE*NLPEQKQLLSP
Trigger: AGGGGACAGCAGTTGCTTCTGCTCAGGCAAATTCCACTCCCACCAGTGTGGCTTCTGTGGTTGCATCTGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CAA 72 bp CTTACCAGGGCCGTAGCTGAGGCTGCATTCTGCAGTTaGGGTGACTGGCTGAAAGTGTGCAGAACACCACGA +
Preference number: 6 (lower is better)
Translates to: LTRAVAEAAFCS*GDWLKVCRTPR
Trigger: TCGTGGTGTTCTGCACACTTTCAGCCAGTCACCCAAACTGCAGAATGCAGCCTCAGCTACGGCCCTGGTAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CAA 90 bp CAGTGCTGGTGTCTTTCAAGGCTACTGTGGTCAGGCCATTCACCCTaGGGCTCGATGGCTGCTCACTGTCAGAGAGCACAATCACATCAG +
Preference number: 6 (lower is better)
Translates to: QCWCLSRLLWSGHSP*GSMAAHCQRAQSHQ
Trigger: CTGATGTGATTGTGCTCTCTGACAGTGAGCAGCCATCGAGCCCAAGGGTGAATGGCCTGACCACAGTAGCCTTGAAAGACACCAGCACTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212277.2
ENSMUST00000212478.2
CDS TCA 72 bp CAAAGGCGGCCTTCAGGCGACTGGTGTGCTCCACCTTaGGTGCCTTCTTTTGGTTGGATGTCATGCAGTTCT +
Preference number: 6 (lower is better)
Translates to: QRRPSGDWCAPP*VPSFGWMSCSS
Trigger: AGAACTGCATGACATCCAACCAAAAGAAGGCACTCAAGGTGGAGCACACCAGTCGCCTGAAGGCCGCCTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CCA 72 bp GAGACTCAGCAGATGCAACCACAGAAGCCACACTGGTaGGAGTGGAATTTGCCTGAGCAGAAGCAACTGCTG +
Preference number: 6 (lower is better)
Translates to: ETQQMQPQKPHW*EWNLPEQKQLL
Trigger: CAGCAGTTGCTTCTGCTCAGGCAAATTCCACTCCCACCAGTGTGGCTTCTGTGGTTGCATCTGCTGAGTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CAA 72 bp TGTCTTTCAAGGCTACTGTGGTCAGGCCATTCACCCTaGGGCTCGATGGCTGCTCACTGTCAGAGAGCACAA +
Preference number: 6 (lower is better)
Translates to: CLSRLLWSGHSP*GSMAAHCQRAQ
Trigger: TTGTGCTCTCTGACAGTGAGCAGCCATCGAGCCCAAGGGTGAATGGCCTGACCACAGTAGCCTTGAAAGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212277.2
ENSMUST00000212478.2
CDS CAA 72 bp ACAAAGGCGGCCTTCAGGCGACTGGTGTGCTCCACCTaGAGTGCCTTCTTTTGGTTGGATGTCATGCAGTTC +
Preference number: 6 (lower is better)
Translates to: TKAAFRRLVCST*SAFFWLDVMQF
Trigger: GAACTGCATGACATCCAACCAAAAGAAGGCACTCAAGGTGGAGCACACCAGTCGCCTGAAGGCCGCCTTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CAA 90 bp GCCTTCAGGCGACTGGTGTGCTCCACCTTGAGTGCCTTCTTTTGGTaGGATGTCATGCAGTTCTCACACATAACGGCTCCACCCTTCTCT +
Preference number: 6 (lower is better)
Translates to: AFRRLVCSTLSAFFW*DVMQFSHITAPPFS
Trigger: AGAGAAGGGTGGAGCCGTTATGTGTGAGAACTGCATGACATCCAACCAAAAGAAGGCACTCAAGGTGGAGCACACCAGTCGCCTGAAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CCA 72 bp GTTCTTCTGGGCTGCTTTTCAAGAGCGCCTCAGTGCTaGTGTCTTTCAAGGCTACTGTGGTCAGGCCATTCA +
Preference number: 6 (lower is better)
Translates to: VLLGCFSRAPQC*CLSRLLWSGHS
Trigger: TGAATGGCCTGACCACAGTAGCCTTGAAAGACACCAGCACTGAGGCGCTCTTGAAAAGCAGCCCAGAAGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212277.2
ENSMUST00000212478.2
CDS CAA 72 bp CAGGCGACTGGTGTGCTCCACCTTGAGTGCCTTCTTTaGGTTGGATGTCATGCAGTTCTCACACATAACGGC +
Preference number: 6 (lower is better)
Translates to: QATGVLHLECLL*VGCHAVLTHNG
Trigger: GCCGTTATGTGTGAGAACTGCATGACATCCAACCAAAAGAAGGCACTCAAGGTGGAGCACACCAGTCGCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CAA 90 bp AGAGCCTTCACAAAGGCGGCCTTCAGGCGACTGGTGTGCTCCACCTaGAGTGCCTTCTTTTGGTTGGATGTCATGCAGTTCTCACACATA +
Preference number: 6 (lower is better)
Translates to: RAFTKAAFRRLVCST*SAFFWLDVMQFSHI
Trigger: TATGTGTGAGAACTGCATGACATCCAACCAAAAGAAGGCACTCAAGGTGGAGCACACCAGTCGCCTGAAGGCCGCCTTTGTGAAGGCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS TCA 72 bp GCTGTAGGCTTCTGTGCGGTGGCTTCCTTCTGTATCTaGCTCTGCCGCAGCTTCTTCAACAAGACCAGTTTT +
Preference number: 6 (lower is better)
Translates to: AVGFCAVASFCI*LCRSFFNKTSF
Trigger: AAAACTGGTCTTGTTGAAGAAGCTGCGGCAGAGTCAGATACAGAAGGAAGCCACCGCACAGAAGCCTACAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CCA 72 bp AGGCGACTGGTGTGCTCCACCTTGAGTGCCTTCTTTTaGTTGGATGTCATGCAGTTCTCACACATAACGGCT +
Preference number: 6 (lower is better)
Translates to: RRLVCSTLSAFF*LDVMQFSHITA
Trigger: AGCCGTTATGTGTGAGAACTGCATGACATCCAACCAAAAGAAGGCACTCAAGGTGGAGCACACCAGTCGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2
CDS CAA 72 bp CGACTGGTGTGCTCCACCTTGAGTGCCTTCTTTTGGTaGGATGTCATGCAGTTCTCACACATAACGGCTCCA +
Preference number: 6 (lower is better)
Translates to: RLVCSTLSAFFW*DVMQFSHITAP
Trigger: TGGAGCCGTTATGTGTGAGAACTGCATGACATCCAACCAAAAGAAGGCACTCAAGGTGGAGCACACCAGTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065169.12
ENSMUST00000116463.4
ENSMUST00000177851.9
ENSMUST00000212478.2