Pregenerated sensors for GATA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031162Ensembl transcript IDs: ENSMUST00000033502.14, ENSMUST00000125418.2, ENSMUST00000128449.2
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AGGAAGGAAAATGTCAGGCATAGCAATACATGCCTGAATCTCAGTACTCGGGAGGTAGAGGCAGGAGAATaGGAAATGTGGGGTCACCCT | + |
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Preference number: 2 (lower is better) Translates to: RKENVRHSNTCLNLSTREVEAGE*EMWGHP Trigger: AGGGTGACCCCACATTTCCCATTCTCCTGCCTCTAC...CTCCCGAGTACTGAGATTCAGGCATGTATTGCTATGCCTGACATTTTCCTTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| 3UTR-3UTR GCA 90 bp | AGGCACAAGGATCTCAAGCTGGAGCTTAGTCTGGACTACATAAGGAATTCAAAGAGGCATAGCAATACATaGCTGAATCTCAGTACTCGG | + |
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Preference number: 2 (lower is better) Translates to: RHKDLKLELSLDYIRNSKRHSNT*LNLSTR Trigger: CCGAGTACTGAGATTCAGGCATGTATTGCTATGCCT...CTTTGAATTCCTTATGTAGTCCAGACTAAGCTCCAGCTTGAGATCCTTGTGCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| 3UTR GCA 72 bp | ACTGAAAGGAAGGAAAATGTCAGGCATAGCAATACATaGCTGAATCTCAGTACTCGGGAGGTAGAGGCAGGA | + |
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Preference number: 3 (lower is better) Translates to: TERKENVRHSNT*LNLSTREVEAG Trigger: TCCTGCCTCTACCTCCCGAGTACTGAGATTCAGGCATGTATTGCTATGCCTGACATTTTCCTTCCTTTCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR TCA 90 bp | GAATCTCAGTACTCGGGAGGTAGAGGCAGGAGAATGGGAAATGTGGGGTCACCCGTAGTAGGCCAGTGCTaGTGCTGCGGCCGTGGCTGC | + |
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Preference number: 4 (lower is better) Translates to: ESQYSGGRGRRMGNVGSPVVGQC*CCGRGC Trigger: GCAGCCACGGCCGCAGCATCAGCACTGGCCTACTAC...GGGTGACCCCACATTTCCCATTCTCCTGCCTCTACCTCCCGAGTACTGAGATTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR TCA 90 bp | GAATCTCAGTACTCGGGAGGTAGAGGCAGGAGAATGGGAAATGTGGGGTCACCCGCTGGGGCACACAGTTaGGGCAGGGTAGAGTGCCGT | + |
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Preference number: 4 (lower is better) Translates to: ESQYSGGRGRRMGNVGSPAGAHS*GRVECR Trigger: ACGGCACTCTACCCTGCCTCAACTGTGTGCCCCAGC...GGGTGACCCCACATTTCCCATTCTCCTGCCTCTACCTCCCGAGTACTGAGATTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR GCA 90 bp | GAATCTCAGTACTCGGGAGGTAGAGGCAGGAGAATGGGAAATGTGGGGTCACCCGGGCAGTACCTGCAGTaGCCAGTGCCAAGCCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: ESQYSGGRGRRMGNVGSPGQYLQ*PVPSLR Trigger: CCTCAGGCTTGGCACTGGGCACTGCAGGTACTGCCC...GGGTGACCCCACATTTCCCATTCTCCTGCCTCTACCTCCCGAGTACTGAGATTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR GCA 90 bp | GAATCTCAGTACTCGGGAGGTAGAGGCAGGAGAATGGGAAATGTGGGGTCACCCGAGGTGGGCAGTACCTaGAGTGCCCAGTGCCAAGCC | + |
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Preference number: 4 (lower is better) Translates to: ESQYSGGRGRRMGNVGSPEVGST*SAQCQA Trigger: GGCTTGGCACTGGGCACTGCAGGTACTGCCCACCTC...GGGTGACCCCACATTTCCCATTCTCCTGCCTCTACCTCCCGAGTACTGAGATTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR GCA 90 bp | CCTGAATCTCAGTACTCGGGAGGTAGAGGCAGGAGAATGGGAAATGTGGGGTCAGCTGCTGGTGGTAGGTaGAGGACCGGTGGGGAAGGA | + |
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Preference number: 4 (lower is better) Translates to: PESQYSGGRGRRMGNVGSAAGGR*RTGGEG Trigger: TCCTTCCCCACCGGTCCTGCACCTACCACCAGCAGC...TGACCCCACATTTCCCATTCTCCTGCCTCTACCTCCCGAGTACTGAGATTCAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR CCA 90 bp | GAATCTCAGTACTCGGGAGGTAGAGGCAGGAGAATGGGAAATGTGGGGTCACCCCTGATGCTGCGGCCGTaGCTGCATTTGGGGAAGTGG | + |
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Preference number: 4 (lower is better) Translates to: ESQYSGGRGRRMGNVGSPLMLRP*LHLGKW Trigger: CCACTTCCCCAAATGCAGCCACGGCCGCAGCATCAG...GGGTGACCCCACATTTCCCATTCTCCTGCCTCTACCTCCCGAGTACTGAGATTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR TCA 90 bp | CCTGAATCTCAGTACTCGGGAGGTAGAGGCAGGAGAATGGGAAATGTGGGGTCAAATAGGCTGCTGAGCTaGGAGGGCTCCCAGTGGGAG | + |
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Preference number: 4 (lower is better) Translates to: PESQYSGGRGRRMGNVGSNRLLS*EGSQWE Trigger: CTCCCACTGGGAGCCCTCTCAGCTCAGCAGCCTATT...TGACCCCACATTTCCCATTCTCCTGCCTCTACCTCCCGAGTACTGAGATTCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR GCA 90 bp | CCTGAATCTCAGTACTCGGGAGGTAGAGGCAGGAGAATGGGAAATGTGGGGTCAAGAGGCCGCAGGCATTaGATACCGGATCTCCGCTGG | + |
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Preference number: 4 (lower is better) Translates to: PESQYSGGRGRRMGNVGSRGRRH*IPDLRW Trigger: CCAGCGGAGATCCGGTATGCAATGCCTGCGGCCTCT...TGACCCCACATTTCCCATTCTCCTGCCTCTACCTCCCGAGTACTGAGATTCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR TCA 90 bp | ATGCCTGAATCTCAGTACTCGGGAGGTAGAGGCAGGAGAATGGGAAATGTGGGGTCACCTGATGGAGCTTaGAATAGAGGCCGCAGGCAT | + |
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Preference number: 4 (lower is better) Translates to: MPESQYSGGRGRRMGNVGSPDGA*NRGRRH Trigger: ATGCCTGCGGCCTCTATTTCAAGCTCCATCAGGTGA...CCCCACATTTCCCATTCTCCTGCCTCTACCTCCCGAGTACTGAGATTCAGGCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR GCA 90 bp | GAATCTCAGTACTCGGGAGGTAGAGGCAGGAGAATGGGAAATGTGGGGTCACCCGGAAGTGGAAGAAGATaGTGCATCCAAACCCTCTGG | + |
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Preference number: 4 (lower is better) Translates to: ESQYSGGRGRRMGNVGSPGSGRR*CIQTLW Trigger: CCAGAGGGTTTGGATGCAGCATCTTCTTCCACTTCC...GGGTGACCCCACATTTCCCATTCTCCTGCCTCTACCTCCCGAGTACTGAGATTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR GCA 90 bp | CCTGAATCTCAGTACTCGGGAGGTAGAGGCAGGAGAATGGGAAATGTGGGGTCACTTTGCCAGATGCCTTaGGGTTCCTCGTCTGGATTC | + |
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Preference number: 4 (lower is better) Translates to: PESQYSGGRGRRMGNVGSLCQMP*GSSSGF Trigger: GAATCCAGACGAGGAACCGCAAGGCATCTGGCAAAG...TGACCCCACATTTCCCATTCTCCTGCCTCTACCTCCCGAGTACTGAGATTCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR CCA 90 bp | CCTGAATCTCAGTACTCGGGAGGTAGAGGCAGGAGAATGGGAAATGTGGGGTCATTTCCTCATGGTCAGTaGGCGGTTCACCTGATGGAG | + |
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Preference number: 4 (lower is better) Translates to: PESQYSGGRGRRMGNVGSFPHGQ*AVHLME Trigger: CTCCATCAGGTGAACCGCCCACTGACCATGAGGAAA...TGACCCCACATTTCCCATTCTCCTGCCTCTACCTCCCGAGTACTGAGATTCAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR TCA 90 bp | GAACTGAGGCACAAGGATCTCAAGCTGGAGCTTAGTCTGGACTACATAAGGAATGCTTCTTGGGCCGGATaGGAGGCCGGTTCTGACCAT | + |
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Preference number: 4 (lower is better) Translates to: ELRHKDLKLELSLDYIRNASWAG*EAGSDH Trigger: ATGGTCAGAACCGGCCTCTCATCCGGCCCAAGAAGC...ATTCCTTATGTAGTCCAGACTAAGCTCCAGCTTGAGATCCTTGTGCCTCAGTTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR CCA 90 bp | AGGAAGGAAAATGTCAGGCATAGCAATACATGCCTGAATCTCAGTACTCGGGAGGTCCCTCCGCCACAGTaGAGTAGCCGTTGCTCCACA | + |
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Preference number: 4 (lower is better) Translates to: RKENVRHSNTCLNLSTREVPPPQ*SSRCST Trigger: TGTGGAGCAACGGCTACTCCACTGTGGCGGAGGGAC...CTCCCGAGTACTGAGATTCAGGCATGTATTGCTATGCCTGACATTTTCCTTCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR CCA 90 bp | GTCACCCTTATCTACATAGTTCATAGCTACATAGCTACAGAAGATCCTGTCTCCCATGAAGCCACCAGCTaGTCCTTCAGCCGCTCCCGC | + |
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Preference number: 4 (lower is better) Translates to: VTLIYIVHSYIATEDPVSHEATS*SFSRSR Trigger: GCGGGAGCGGCTGAAGGACCAGCTGGTGGCTTCATG...GGAGACAGGATCTTCTGTAGCTATGTAGCTATGAACTATGTAGATAAGGGTGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR CCA 90 bp | ATGCCTGAATCTCAGTACTCGGGAGGTAGAGGCAGGAGAATGGGAAATGTGGGGCATACTGTTGAGCAGTaGATACACCTGAAAGACTGG | + |
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Preference number: 4 (lower is better) Translates to: MPESQYSGGRGRRMGNVGHTVEQ*IHLKDW Trigger: CCAGTCTTTCAGGTGTATCCACTGCTCAACAGTATG...CCCCACATTTCCCATTCTCCTGCCTCTACCTCCCGAGTACTGAGATTCAGGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR CCA 90 bp | GAACTGAGGCACAAGGATCTCAAGCTGGAGCTTAGTCTGGACTACATAAGGAATTTGCTCTTCCCTTCCTaGTCTTCCAGGGCCTGGGAA | + |
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Preference number: 4 (lower is better) Translates to: ELRHKDLKLELSLDYIRNLLFPS*SSRAWE Trigger: TTCCCAGGCCCTGGAAGACCAGGAAGGGAAGAGCAA...ATTCCTTATGTAGTCCAGACTAAGCTCCAGCTTGAGATCCTTGTGCCTCAGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR TCA 90 bp | AGGAAGGAAAATGTCAGGCATAGCAATACATGCCTGAATCTCAGTACTCGGGAGAGCAGTGGATACACCTaGAAGACTGGGGAGTGTCTG | + |
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Preference number: 4 (lower is better) Translates to: RKENVRHSNTCLNLSTRESSGYT*KTGECL Trigger: CAGACACTCCCCAGTCTTTCAGGTGTATCCACTGCT...CTCCCGAGTACTGAGATTCAGGCATGTATTGCTATGCCTGACATTTTCCTTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR CCA 90 bp | AGGCACAAGGATCTCAAGCTGGAGCTTAGTCTGGACTACATAAGGAATTCAAAGGGCCGTGGCTGCATTTaGGGAAGTGGAAGAAGATGC | + |
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Preference number: 4 (lower is better) Translates to: RHKDLKLELSLDYIRNSKGRGCI*GSGRRC Trigger: GCATCTTCTTCCACTTCCCCAAATGCAGCCACGGCC...CTTTGAATTCCTTATGTAGTCCAGACTAAGCTCCAGCTTGAGATCCTTGTGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR CCA 90 bp | GTCACCCTTATCTACATAGTTCATAGCTACATAGCTACAGAAGATCCTGTCTCCGAAGGGGCATCCTCATaGCTGGGGCACACAGTTGAG | + |
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Preference number: 4 (lower is better) Translates to: VTLIYIVHSYIATEDPVSEGASS*LGHTVE Trigger: CTCAACTGTGTGCCCCAGCCATGAGGATGCCCCTTC...GGAGACAGGATCTTCTGTAGCTATGTAGCTATGAACTATGTAGATAAGGGTGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR GCA 90 bp | AGGCACAAGGATCTCAAGCTGGAGCTTAGTCTGGACTACATAAGGAATTCAAAGCAGTGGAGTAGCCGTTaGTCCACAGTTCACACACTC | + |
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Preference number: 4 (lower is better) Translates to: RHKDLKLELSLDYIRNSKQWSSR*STVHTL Trigger: GAGTGTGTGAACTGTGGAGCAACGGCTACTCCACTG...CTTTGAATTCCTTATGTAGTCCAGACTAAGCTCCAGCTTGAGATCCTTGTGCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR CCA 90 bp | ACCCTTATCTACATAGTTCATAGCTACATAGCTACAGAAGATCCTGTCTCCAAACAGCGTCAGGAGGTCTaGACTCAGCCGCTCCGTCTT | + |
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Preference number: 4 (lower is better) Translates to: TLIYIVHSYIATEDPVSKQRQEV*TQPLRL Trigger: AAGACGGAGCGGCTGAGTCCAGACCTCCTGACGCTG...TTTGGAGACAGGATCTTCTGTAGCTATGTAGCTATGAACTATGTAGATAAGGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR CCA 90 bp | AGGCACAAGGATCTCAAGCTGGAGCTTAGTCTGGACTACATAAGGAATTCAAAGTGCATCCAAACCCTCTaGCCCAGAGGAAAAGAAACC | + |
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Preference number: 4 (lower is better) Translates to: RHKDLKLELSLDYIRNSKCIQTL*PRGKET Trigger: GGTTTCTTTTCCTCTGGGCCAGAGGGTTTGGATGCA...CTTTGAATTCCTTATGTAGTCCAGACTAAGCTCCAGCTTGAGATCCTTGTGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR CCA 90 bp | AGGCACAAGGATCTCAAGCTGGAGCTTAGTCTGGACTACATAAGGAATTCAAAGATACACCTGAAAGACTaGGGAGTGTCTGTAGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: RHKDLKLELSLDYIRNSKIHLKD*GVSVGL Trigger: GAGGCCTACAGACACTCCCCAGTCTTTCAGGTGTAT...CTTTGAATTCCTTATGTAGTCCAGACTAAGCTCCAGCTTGAGATCCTTGTGCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR CCA 90 bp | AGGCACAAGGATCTCAAGCTGGAGCTTAGTCTGGACTACATAAGGAATTCAAAGGGCTTCCATGAAACTTaGGGGAAGAATAGGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: RHKDLKLELSLDYIRNSKGFHET*GKNRLL Trigger: CAGCAGCCTATTCTTCCCCCAAGTTTCATGGAAGCC...CTTTGAATTCCTTATGTAGTCCAGACTAAGCTCCAGCTTGAGATCCTTGTGCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR CCA 90 bp | GTCACCCTTATCTACATAGTTCATAGCTACATAGCTACAGAAGATCCTGTCTCCGGAAAAGGCATAAGATaGCTGACAGGCCCTGACAGT | + |
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Preference number: 4 (lower is better) Translates to: VTLIYIVHSYIATEDPVSGKGIR*LTGPDS Trigger: ACTGTCAGGGCCTGTCAGCCATCTTATGCCTTTTCC...GGAGACAGGATCTTCTGTAGCTATGTAGCTATGAACTATGTAGATAAGGGTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR GCA 90 bp | ACCCTTATCTACATAGTTCATAGCTACATAGCTACAGAAGATCCTGTCTCCAAAACAAGCCACAGGCATTaGACAGGTAGTGACCTGTCC | + |
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Preference number: 4 (lower is better) Translates to: TLIYIVHSYIATEDPVSKTSHRH*TGSDLS Trigger: GGACAGGTCACTACCTGTGCAATGCCTGTGGCTTGT...TTTGGAGACAGGATCTTCTGTAGCTATGTAGCTATGAACTATGTAGATAAGGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR CCA 90 bp | GTCACCCTTATCTACATAGTTCATAGCTACATAGCTACAGAAGATCCTGTCTCCCTGCATTTGGGGAAGTaGAAGAAGATGCTGCATCCA | + |
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Preference number: 4 (lower is better) Translates to: VTLIYIVHSYIATEDPVSLHLGK*KKMLHP Trigger: TGGATGCAGCATCTTCTTCCACTTCCCCAAATGCAG...GGAGACAGGATCTTCTGTAGCTATGTAGCTATGAACTATGTAGATAAGGGTGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR CCA 90 bp | GTCACCCTTATCTACATAGTTCATAGCTACATAGCTACAGAAGATCCTGTCTCCTTGCGGTTCCTCGTCTaGATTCCATCTTTCCTCATG | + |
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Preference number: 4 (lower is better) Translates to: VTLIYIVHSYIATEDPVSLRFLV*IPSFLM Trigger: CATGAGGAAAGATGGAATCCAGACGAGGAACCGCAA...GGAGACAGGATCTTCTGTAGCTATGTAGCTATGAACTATGTAGATAAGGGTGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR CCA 90 bp | ACCCTTATCTACATAGTTCATAGCTACATAGCTACAGAAGATCCTGTCTCCAAAAGGAAAAGAAACCTGTaGAATCTGATGGTGAGGACA | + |
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Preference number: 4 (lower is better) Translates to: TLIYIVHSYIATEDPVSKRKRNL*NLMVRT Trigger: TGTCCTCACCATCAGATTCCACAGGTTTCTTTTCCT...TTTGGAGACAGGATCTTCTGTAGCTATGTAGCTATGAACTATGTAGATAAGGGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS GCA 90 bp | AGCTCCCCCGTAAGCACTGCCGGTGACAGGGAGCGATGCAGGCAGTaGAGTCCCCAGCGTCAGGAGGTCTGGACTCAGCCGCTCCGTCTT | + |
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Preference number: 5 (lower is better) Translates to: SSPVSTAGDRERCRQ*SPQRQEVWTQPLRL Trigger: AAGACGGAGCGGCTGAGTCCAGACCTCCTGACGCTGGGGACTGCACTGCCTGCATCGCTCCCTGTCACCGGCAGTGCTTACGGGGGAGCT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS GCA 90 bp | GGGAAAGTCAGCTCCCCCGTAAGCACTGCCGGTGACAGGGAGCGATaGAGGCAGTGCAGTCCCCAGCGTCAGGAGGTCTGGACTCAGCCG | + |
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Preference number: 5 (lower is better) Translates to: GKVSSPVSTAGDRER*RQCSPQRQEVWTQP Trigger: CGGCTGAGTCCAGACCTCCTGACGCTGGGGACTGCACTGCCTGCATCGCTCCCTGTCACCGGCAGTGCTTACGGGGGAGCTGACTTTCCC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS TCA 90 bp | AGAAGAAAGGACTGGGAAAGTCAGCTCCCCCGTAAGCACTGCCGGTaGCAGGGAGCGATGCAGGCAGTGCAGTCCCCAGCGTCAGGAGGT | + |
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Preference number: 5 (lower is better) Translates to: RRKDWESQLPRKHCR*QGAMQAVQSPASGG Trigger: ACCTCCTGACGCTGGGGACTGCACTGCCTGCATCGCTCCCTGTCACCGGCAGTGCTTACGGGGGAGCTGACTTTCCCAGTCCTTTCTTCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS CCA 90 bp | ATTCCCACTACTGCTGCTACCAGCTACCACCATGAAGCCACCAGCTaGTCCTTCAGCCGCTCCCGCTCCAGCCAGATTCGACCCCCGCTT | + |
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Preference number: 5 (lower is better) Translates to: IPTTAATSYHHEATS*SFSRSRSSQIRPPL Trigger: AAGCGGGGGTCGAATCTGGCTGGAGCGGGAGCGGCTGAAGGACCAGCTGGTGGCTTCATGGTGGTAGCTGGTAGCAGCAGTAGTGGGAAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS CCA 90 bp | TCCAAGAACGTGTTGTTGCTCTTCCCTTCCTGGTCTTCCAGGGCCTaGGAAGGGGCATCCTCATGGCTGGGGCACACAGTTGAGGCAGGG | + |
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Preference number: 5 (lower is better) Translates to: SKNVLLLFPSWSSRA*EGASSWLGHTVEAG Trigger: CCCTGCCTCAACTGTGTGCCCCAGCCATGAGGATGCCCCTTCCCAGGCCCTGGAAGACCAGGAAGGGAAGAGCAACAACACGTTCTTGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS CCA 90 bp | GACAGGGAGCGATGCAGGCAGTGCAGTCCCCAGCGTCAGGAGGTCTaGACTCAGCCGCTCCGTCTTCAAGGTGTCCAAGAACGTGTTGTT | + |
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Preference number: 5 (lower is better) Translates to: DRERCRQCSPQRQEV*TQPLRLQGVQERVV Trigger: AACAACACGTTCTTGGACACCTTGAAGACGGAGCGGCTGAGTCCAGACCTCCTGACGCTGGGGACTGCACTGCCTGCATCGCTCCCTGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS TCA 90 bp | TGGGGAGTGTCTGTAGGCCTCAGCTTCTCTGTAGTAGGCCAGTGCTaGTGCTGCGGCCGTGGCTGCATTTGGGGAAGTGGAAGAAGATGC | + |
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Preference number: 5 (lower is better) Translates to: WGVSVGLSFSVVGQC*CCGRGCIWGSGRRC Trigger: GCATCTTCTTCCACTTCCCCAAATGCAGCCACGGCCGCAGCATCAGCACTGGCCTACTACAGAGAAGCTGAGGCCTACAGACACTCCCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000033502.14 ENSMUST00000125418.2 |
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| CDS GCA 90 bp | CCGCTCCCGCTCCAGCCAGATTCGACCCCCGCTTCTTTTTCCCTTTaGCAGATGCCTTGCGGTTCCTCGTCTGGATTCCATCTTTCCTCA | + |
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Preference number: 5 (lower is better) Translates to: PLPLQPDSTPASFSL*QMPCGSSSGFHLSS Trigger: TGAGGAAAGATGGAATCCAGACGAGGAACCGCAAGGCATCTGGCAAAGGGAAAAAGAAGCGGGGGTCGAATCTGGCTGGAGCGGGAGCGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS TCA 90 bp | GGCAGGGTAGAGTGCCGTCTTGCCATAGGCCCAGCTAGCATAAGGTaGGCCCCCAGGAATTCCCTCCATACTGTTGAGCAGTGGATACAC | + |
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Preference number: 5 (lower is better) Translates to: GRVECRLAIGPASIR*APRNSLHTVEQWIH Trigger: GTGTATCCACTGCTCAACAGTATGGAGGGAATTCCTGGGGGCTCACCTTATGCTAGCTGGGCCTATGGCAAGACGGCACTCTACCCTGCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000033502.14 ENSMUST00000125418.2 |
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| CDS CCA 90 bp | AGTAGGCCAGTGCTGATGCTGCGGCCGTGGCTGCATTTGGGGAAGTaGAAGAAGATGCTGCATCCAAACCCTCTGGCCCAGAGGAAAAGA | + |
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Preference number: 5 (lower is better) Translates to: SRPVLMLRPWLHLGK*KKMLHPNPLAQRKR Trigger: TCTTTTCCTCTGGGCCAGAGGGTTTGGATGCAGCATCTTCTTCCACTTCCCCAAATGCAGCCACGGCCGCAGCATCAGCACTGGCCTACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033502.14 ENSMUST00000125418.2 ENSMUST00000128449.2 |
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| CDS GCA 90 bp | CGCTCCAGCCAGATTCGACCCCCGCTTCTTTTTCCCTTTGCCAGATaGCTTGCGGTTCCTCGTCTGGATTCCATCTTTCCTCATGGTCAG | + |
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Preference number: 5 (lower is better) Translates to: RSSQIRPPLLFPFAR*LAVPRLDSIFPHGQ Trigger: CTGACCATGAGGAAAGATGGAATCCAGACGAGGAACCGCAAGGCATCTGGCAAAGGGAAAAAGAAGCGGGGGTCGAATCTGGCTGGAGCG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS CCA 90 bp | AAGATGCTGCATCCAAACCCTCTGGCCCAGAGGAAAAGAAACCTGTaGAATCTGATGGTGAGGACACCAGGGCAGAATCCACAAACTGGG | + |
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Preference number: 5 (lower is better) Translates to: KMLHPNPLAQRKRNL*NLMVRTPGQNPQTG Trigger: CCCAGTTTGTGGATTCTGCCCTGGTGTCCTCACCATCAGATTCCACAGGTTTCTTTTCCTCTGGGCCAGAGGGTTTGGATGCAGCATCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033502.14 ENSMUST00000125418.2 ENSMUST00000128449.2 |
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| CDS-3UTR CAA 90 bp | GAACTGAGGCACAAGGATCTCAAGCTGGAGCTTAGTCTGGACTACATAAGGAATCGGCCGTGGCTGCATTaGGGGAAGTGGAAGAAGATG | + |
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Preference number: 5 (lower is better) Translates to: ELRHKDLKLELSLDYIRNRPWLH*GKWKKM Trigger: CATCTTCTTCCACTTCCCCAAATGCAGCCACGGCCG...ATTCCTTATGTAGTCCAGACTAAGCTCCAGCTTGAGATCCTTGTGCCTCAGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR CAA 90 bp | AGGCACAAGGATCTCAAGCTGGAGCTTAGTCTGGACTACATAAGGAATTCAAAGACAATCATTCGCTTCTaGGGCCGGATGAGAGGCCGG | + |
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Preference number: 5 (lower is better) Translates to: RHKDLKLELSLDYIRNSKTIIRF*GRMRGR Trigger: CCGGCCTCTCATCCGGCCCAAGAAGCGAATGATTGT...CTTTGAATTCCTTATGTAGTCCAGACTAAGCTCCAGCTTGAGATCCTTGTGCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR CAA 90 bp | TGTGGGGTCACCCTTATCTACATAGTTCATAGCTACATAGCTACAGAAGATCCTCCTTTGCCAGATGCCTaGCGGTTCCTCGTCTGGATT | + |
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Preference number: 5 (lower is better) Translates to: CGVTLIYIVHSYIATEDPPLPDA*RFLVWI Trigger: AATCCAGACGAGGAACCGCAAGGCATCTGGCAAAGG...AGGATCTTCTGTAGCTATGTAGCTATGAACTATGTAGATAAGGGTGACCCCACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR CAA 90 bp | AGGCACAAGGATCTCAAGCTGGAGCTTAGTCTGGACTACATAAGGAATTCAAAGTCCAAGAACGTGTTGTaGCTCTTCCCTTCCTGGTCT | + |
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Preference number: 5 (lower is better) Translates to: RHKDLKLELSLDYIRNSKSKNVL*LFPSWS Trigger: AGACCAGGAAGGGAAGAGCAACAACACGTTCTTGGA...CTTTGAATTCCTTATGTAGTCCAGACTAAGCTCCAGCTTGAGATCCTTGTGCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR CAA 90 bp | TGTGGGGTCACCCTTATCTACATAGTTCATAGCTACATAGCTACAGAAGATCCTTTGACAGTTAGTGCATaGGGTGCCTGCCCGTTTGCT | + |
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Preference number: 5 (lower is better) Translates to: CGVTLIYIVHSYIATEDPLTVSA*GACPFA Trigger: AGCAAACGGGCAGGCACCCAATGCACTAACTGTCAA...AGGATCTTCTGTAGCTATGTAGCTATGAACTATGTAGATAAGGGTGACCCCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS-3UTR CAA 90 bp | ACCCTTATCTACATAGTTCATAGCTACATAGCTACAGAAGATCCTGTCTCCAAAGTGTCCAAGAACGTGTaGTTGCTCTTCCCTTCCTGG | + |
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Preference number: 5 (lower is better) Translates to: TLIYIVHSYIATEDPVSKVSKNV*LLFPSW Trigger: CCAGGAAGGGAAGAGCAACAACACGTTCTTGGACAC...TTTGGAGACAGGATCTTCTGTAGCTATGTAGCTATGAACTATGTAGATAAGGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS TCA 72 bp | GACTGGGAAAGTCAGCTCCCCCGTAAGCACTGCCGGTaGCAGGGAGCGATGCAGGCAGTGCAGTCCCCAGCG | + |
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Preference number: 6 (lower is better) Translates to: DWESQLPRKHCR*QGAMQAVQSPA Trigger: CGCTGGGGACTGCACTGCCTGCATCGCTCCCTGTCACCGGCAGTGCTTACGGGGGAGCTGACTTTCCCAGTC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS GCA 72 bp | GTAAGCACTGCCGGTGACAGGGAGCGATGCAGGCAGTaGAGTCCCCAGCGTCAGGAGGTCTGGACTCAGCCG | + |
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Preference number: 6 (lower is better) Translates to: VSTAGDRERCRQ*SPQRQEVWTQP Trigger: CGGCTGAGTCCAGACCTCCTGACGCTGGGGACTGCACTGCCTGCATCGCTCCCTGTCACCGGCAGTGCTTAC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS CCA 72 bp | CGATGCAGGCAGTGCAGTCCCCAGCGTCAGGAGGTCTaGACTCAGCCGCTCCGTCTTCAAGGTGTCCAAGAA | + |
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Preference number: 6 (lower is better) Translates to: RCRQCSPQRQEV*TQPLRLQGVQE Trigger: TTCTTGGACACCTTGAAGACGGAGCGGCTGAGTCCAGACCTCCTGACGCTGGGGACTGCACTGCCTGCATCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS CCA 72 bp | ACTGCTGCTACCAGCTACCACCATGAAGCCACCAGCTaGTCCTTCAGCCGCTCCCGCTCCAGCCAGATTCGA | + |
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Preference number: 6 (lower is better) Translates to: TAATSYHHEATS*SFSRSRSSQIR Trigger: TCGAATCTGGCTGGAGCGGGAGCGGCTGAAGGACCAGCTGGTGGCTTCATGGTGGTAGCTGGTAGCAGCAGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS CCA 72 bp | GTGCTGATGCTGCGGCCGTGGCTGCATTTGGGGAAGTaGAAGAAGATGCTGCATCCAAACCCTCTGGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: VLMLRPWLHLGK*KKMLHPNPLAQ Trigger: CTGGGCCAGAGGGTTTGGATGCAGCATCTTCTTCCACTTCCCCAAATGCAGCCACGGCCGCAGCATCAGCAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000033502.14 ENSMUST00000125418.2 ENSMUST00000128449.2 |
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| CDS TCA 72 bp | TCTGTAGGCCTCAGCTTCTCTGTAGTAGGCCAGTGCTaGTGCTGCGGCCGTGGCTGCATTTGGGGAAGTGGA | + |
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Preference number: 6 (lower is better) Translates to: SVGLSFSVVGQC*CCGRGCIWGSG Trigger: TCCACTTCCCCAAATGCAGCCACGGCCGCAGCATCAGCACTGGCCTACTACAGAGAAGCTGAGGCCTACAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000033502.14 ENSMUST00000125418.2 |
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| CDS GCA 72 bp | GCCGCTCCGTCTTCAAGGTGTCCAAGAACGTGTTGTTaGTCTTCCCTTCCTGGTCTTCCAGGGCCTGGGAAG | + |
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Preference number: 6 (lower is better) Translates to: AAPSSRCPRTCC*SSLPGLPGPGK Trigger: CTTCCCAGGCCCTGGAAGACCAGGAAGGGAAGAGCAACAACACGTTCTTGGACACCTTGAAGACGGAGCGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS CCA 72 bp | GGCGATCCCAGCAGAGGTCCAGGAAAAGGCATAAGATaGCTGACAGGCCCTGACAGTACCACAGGTCCTAGG | + |
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Preference number: 6 (lower is better) Translates to: GDPSRGPGKGIR*LTGPDSTTGPR Trigger: CCTAGGACCTGTGGTACTGTCAGGGCCTGTCAGCCATCTTATGCCTTTTCCTGGACCTCTGCTGGGATCGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS GCA 72 bp | GGCCGTGGCTGCATTTGGGGAAGTGGAAGAAGATGCTaGATCCAAACCCTCTGGCCCAGAGGAAAAGAAACC | + |
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Preference number: 6 (lower is better) Translates to: GRGCIWGSGRRC*IQTLWPRGKET Trigger: GGTTTCTTTTCCTCTGGGCCAGAGGGTTTGGATGCAGCATCTTCTTCCACTTCCCCAAATGCAGCCACGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033502.14 ENSMUST00000125418.2 ENSMUST00000128449.2 |
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| CDS GCA 72 bp | TGCGGCCGTGGCTGCATTTGGGGAAGTGGAAGAAGATaGTGCATCCAAACCCTCTGGCCCAGAGGAAAAGAA | + |
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Preference number: 6 (lower is better) Translates to: CGRGCIWGSGRR*CIQTLWPRGKE Trigger: TTCTTTTCCTCTGGGCCAGAGGGTTTGGATGCAGCATCTTCTTCCACTTCCCCAAATGCAGCCACGGCCGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000033502.14 ENSMUST00000125418.2 ENSMUST00000128449.2 |
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| CDS GCA 72 bp | TCGACCCCCGCTTCTTTTTCCCTTTGCCAGATGCCTTaGGGTTCCTCGTCTGGATTCCATCTTTCCTCATGG | + |
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Preference number: 6 (lower is better) Translates to: STPASFSLCQMP*GSSSGFHLSSW Trigger: CCATGAGGAAAGATGGAATCCAGACGAGGAACCGCAAGGCATCTGGCAAAGGGAAAAAGAAGCGGGGGTCGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS CCA 72 bp | ACAGTTCACACACTCTCTGGCCTCACAAGGGGCCAATaGCAGGCTTCCATGAAACTTGGGGGAAGAATAGGC | + |
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Preference number: 6 (lower is better) Translates to: TVHTLSGLTRGQ*QASMKLGGRIG Trigger: GCCTATTCTTCCCCCAAGTTTCATGGAAGCCTGCCATTGGCCCCTTGTGAGGCCAGAGAGTGTGTGAACTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS CAA 90 bp | ATTCCTCCGCCAGAGTGTTGTAGTGGTCGTTTGACAGTTAGTGCATaGGGTGCCTGCCCGTTTGCTGACAATCATTCGCTTCTTGGGCCG | + |
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Preference number: 6 (lower is better) Translates to: IPPPECCSGRLTVSA*GACPFADNHSLLGP Trigger: CGGCCCAAGAAGCGAATGATTGTCAGCAAACGGGCAGGCACCCAATGCACTAACTGTCAAACGACCACTACAACACTCTGGCGGAGGAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS TCA 72 bp | CATAAGGTGAGCCCCCAGGAATTCCCTCCATACTGTTaGGCAGTGGATACACCTGAAAGACTGGGGAGTGTC | + |
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Preference number: 6 (lower is better) Translates to: HKVSPQEFPPYC*AVDTPERLGSV Trigger: GACACTCCCCAGTCTTTCAGGTGTATCCACTGCTCAACAGTATGGAGGGAATTCCTGGGGGCTCACCTTATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033502.14 ENSMUST00000125418.2 |
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| CDS GCA 72 bp | TGTAGTGGTCGTTTGACAGTTAGTGCATTGGGTGCCTaGCCGTTTGCTGACAATCATTCGCTTCTTGGGCCG | + |
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Preference number: 6 (lower is better) Translates to: CSGRLTVSALGA*PFADNHSLLGP Trigger: CGGCCCAAGAAGCGAATGATTGTCAGCAAACGGGCAGGCACCCAATGCACTAACTGTCAAACGACCACTACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS CAA 72 bp | TTCGACCCCCGCTTCTTTTTCCCTTTGCCAGATGCCTaGCGGTTCCTCGTCTGGATTCCATCTTTCCTCATG | + |
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Preference number: 6 (lower is better) Translates to: FDPRFFFPLPDA*RFLVWIPSFLM Trigger: CATGAGGAAAGATGGAATCCAGACGAGGAACCGCAAGGCATCTGGCAAAGGGAAAAAGAAGCGGGGGTCGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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| CDS CAA 72 bp | CCAGAGTGTTGTAGTGGTCGTTTGACAGTTAGTGCATaGGGTGCCTGCCCGTTTGCTGACAATCATTCGCTT | + |
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Preference number: 6 (lower is better) Translates to: PECCSGRLTVSA*GACPFADNHSL Trigger: AAGCGAATGATTGTCAGCAAACGGGCAGGCACCCAATGCACTAACTGTCAAACGACCACTACAACACTCTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033502.14 |
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