Pregenerated sensors for GAST (Mus musculus)

Ensembl gene IDs: ENSMUSG00000017165

Ensembl transcript IDs: ENSMUST00000017309.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GGGGCCCCAGCTGCCTTCGATGGTGAGAGGCTGAGCCCAGCTTGTTaGACTGGCGCTGTTCCAGGTCCTCATTGGTCCCTGGTCCAGATG	+
Preference number: 5 (lower is better) Translates to: GAPAAFDGERLSPAC*TGAVPGPHWSLVQM Trigger: CATCTGGACCAGGGACCAATGAGGACCTGGAACAGCGCCAGTTCAACAAGCTGGGCTCAGCCTCTCACCATCGAAGGCAGCTGGGGCCCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017309.2
CDS TCA 90 bp	GTGTTGAGGACCCTGGGGCCCCAGCTGCCTTCGATGGTGAGAGGCTaGGCCCAGCTTGTTGAACTGGCGCTGTTCCAGGTCCTCATTGGT	+
Preference number: 5 (lower is better) Translates to: VLRTLGPQLPSMVRG*AQLVELALFQVLIG Trigger: ACCAATGAGGACCTGGAACAGCGCCAGTTCAACAAGCTGGGCTCAGCCTCTCACCATCGAAGGCAGCTGGGGCCCCAGGGTCCTCAACAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017309.2
CDS CCA 90 bp	TCCAGGTCCTCATTGGTCCCTGGTCCAGATGATGCATCCTGTAGCTaGGAGCGGGGCTTCCAAGAAGCTTCCGAGAAGGTAGCTAGAGCC	+
Preference number: 5 (lower is better) Translates to: SRSSLVPGPDDASCS*ERGFQEASEKVARA Trigger: GGCTCTAGCTACCTTCTCGGAAGCTTCTTGGAAGCCCCGCTCCCAGCTACAGGATGCATCATCTGGACCAGGGACCAATGAGGACCTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017309.2
CDS TCA 72 bp	ACCCTGGGGCCCCAGCTGCCTTCGATGGTGAGAGGCTaGGCCCAGCTTGTTGAACTGGCGCTGTTCCAGGTC	+
Preference number: 6 (lower is better) Translates to: TLGPQLPSMVRG*AQLVELALFQV Trigger: GACCTGGAACAGCGCCAGTTCAACAAGCTGGGCTCAGCCTCTCACCATCGAAGGCAGCTGGGGCCCCAGGGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017309.2
CDS TCA 72 bp	GCTGCCTTCGATGGTGAGAGGCTGAGCCCAGCTTGTTaGACTGGCGCTGTTCCAGGTCCTCATTGGTCCCTG	+
Preference number: 6 (lower is better) Translates to: AAFDGERLSPAC*TGAVPGPHWSL Trigger: CAGGGACCAATGAGGACCTGGAACAGCGCCAGTTCAACAAGCTGGGCTCAGCCTCTCACCATCGAAGGCAGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017309.2
CDS CCA 72 bp	TCATTGGTCCCTGGTCCAGATGATGCATCCTGTAGCTaGGAGCGGGGCTTCCAAGAAGCTTCCGAGAAGGTA	+
Preference number: 6 (lower is better) Translates to: SLVPGPDDASCS*ERGFQEASEKV Trigger: TACCTTCTCGGAAGCTTCTTGGAAGCCCCGCTCCCAGCTACAGGATGCATCATCTGGACCAGGGACCAATGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017309.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu