RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GAS1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000052957

Ensembl transcript IDs: ENSMUST00000065086.6, ENSMUST00000223933.2

Found 105 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CCATCTCCGGTCTCCGAGCCACAGGTGCCCTGCTCGGGAACCAGCTaGGTCGTGCATACCGGCCTGGAGCAGCCTGCAGCAGGGGCGCAG +
Preference number: 1 (lower is better)
Translates to: PSPVSEPQVPCSGTS*VVHTGLEQPAAGAQ
Trigger: CTGCGCCCCTGCTGCAGGCTGCTCCAGGCCGGTATGCACGACCCAGCTGGTTCCCGAGCAGGGCACCTGTGGCTCGGAGACCGGAGATGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR CCA 90 bp TGTTGGCTGCGGTACGAGCTGGGCCCTGTCCACCCAGGAAGAGTGTaGGTCAGTGTTCCCGACCATCTCCGGTCTCCGAGCCACAGGTGC +
Preference number: 1 (lower is better)
Translates to: CWLRYELGPVHPGRV*VSVPDHLRSPSHRC
Trigger: GCACCTGTGGCTCGGAGACCGGAGATGGTCGGGAACACTGACCCACACTCTTCCTGGGTGGACAGGGCCCAGCTCGTACCGCAGCCAACA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR GCA 90 bp TCTGCAGCCTGGAAAACCGCACAGAAGAGGGCCGAACATGTTGGCTaGGGTACGAGCTGGGCCCTGTCCACCCAGGAAGAGTGTGGGTCA +
Preference number: 1 (lower is better)
Translates to: SAAWKTAQKRAEHVG*GTSWALSTQEECGS
Trigger: TGACCCACACTCTTCCTGGGTGGACAGGGCCCAGCTCGTACCGCAGCCAACATGTTCGGCCCTCTTCTGTGCGGTTTTCCAGGCTGCAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR CCA 90 bp AAAACCGCACAGAAGAGGGCCGAACATGTTGGCTGCGGTACGAGCTaGGCCCTGTCCACCCAGGAAGAGTGTGGGTCAGTGTTCCCGACC +
Preference number: 1 (lower is better)
Translates to: KTAQKRAEHVGCGTS*ALSTQEECGSVFPT
Trigger: GGTCGGGAACACTGACCCACACTCTTCCTGGGTGGACAGGGCCCAGCTCGTACCGCAGCCAACATGTTCGGCCCTCTTCTGTGCGGTTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR CCA 90 bp TATCTCTGCAGCCTGGAAAACCGCACAGAAGAGGGCCGAACATGTTaGCTGCGGTACGAGCTGGGCCCTGTCCACCCAGGAAGAGTGTGG +
Preference number: 1 (lower is better)
Translates to: YLCSLENRTEEGRTC*LRYELGPVHPGRVW
Trigger: CCACACTCTTCCTGGGTGGACAGGGCCCAGCTCGTACCGCAGCCAACATGTTCGGCCCTCTTCTGTGCGGTTTTCCAGGCTGCAGAGATA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR TCA 90 bp TACACAGGGCACATTTCAAAATGGGCTGCGGGAGCGGGTTCCTGGTaGGCAATGTATTCTATACATTTCTTGGATGGGCTGCAGGAGTGG +
Preference number: 1 (lower is better)
Translates to: YTGHISKWAAGAGSW*AMYSIHFLDGLQEW
Trigger: CCACTCCTGCAGCCCATCCAAGAAATGTATAGAATACATTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTGAAATGTGCCCTGTGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR CCA 90 bp CTGCGGGAGCGGGTTCCTGGTGAGCAATGTATTCTATACATTTCTTaGATGGGCTGCAGGAGTGGATTCCTCATGACCAATGTATTCTAT +
Preference number: 1 (lower is better)
Translates to: LRERVPGEQCILYIS*MGCRSGFLMTNVFY
Trigger: ATAGAATACATTGGTCATGAGGAATCCACTCCTGCAGCCCATCCAAGAAATGTATAGAATACATTGCTCACCAGGAACCCGCTCCCGCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR GCA 90 bp AATACACTGTACATTCTTCTACACAGGGCACATTTCAAAATGGGCTaGGGGAGCGGGTTCCTGGTGAGCAATGTATTCTATACATTTCTT +
Preference number: 1 (lower is better)
Translates to: NTLYILLHRAHFKMG*GSGFLVSNVFYTFL
Trigger: AAGAAATGTATAGAATACATTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTGAAATGTGCCCTGTGTAGAAGAATGTACAGTGTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR TCA 90 bp GTATTCTATACATTTCTTGGATGGGCTGCAGGAGTGGATTCCTCATaGCCAATGTATTCTATACATTTCTTGGATAGGGGAGATACAACA +
Preference number: 1 (lower is better)
Translates to: VFYTFLGWAAGVDSS*PMYSIHFLDRGDTT
Trigger: TGTTGTATCTCCCCTATCCAAGAAATGTATAGAATACATTGGTCATGAGGAATCCACTCCTGCAGCCCATCCAAGAAATGTATAGAATAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR-3UTR GCA 90 bp TCTACACAGGGCACATTTCAAAATGGGCTGCGGGAGCGGGTTCCTGGTGAGCAAGAGCCACAGGTGCCCTaGTCGGGAACCAGCTGGGTC +
Preference number: 2 (lower is better)
Translates to: STQGTFQNGLRERVPGEQEPQVP*SGTSWV
Trigger: GACCCAGCTGGTTCCCGAGCAGGGCACCTGTGGCTC...TTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTGAAATGTGCCCTGTGTAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR-3UTR CCA 90 bp ATACAGTTTATATACGACGTACCAGGGTGGAAGACCCTGATAGGGGCAGAGGTAGGCTGCGGTACGAGCTaGGCCCTGTCCACCCAGGAA +
Preference number: 2 (lower is better)
Translates to: IQFIYDVPGWKTLIGAEVGCGTS*ALSTQE
Trigger: TTCCTGGGTGGACAGGGCCCAGCTCGTACCGCAGCC...TACCTCTGCCCCTATCAGGGTCTTCCACCCTGGTACGTCGTATATAAACTGTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR-3UTR CCA 90 bp TGTAAAATACACTGTACATTCTTCTACACAGGGCACATTTCAAAATGGGCTGCGTCGTGCATACCGGCCTaGAGCAGCCTGCAGCAGGGG +
Preference number: 2 (lower is better)
Translates to: CKIHCTFFYTGHISKWAASCIPA*SSLQQG
Trigger: CCCCTGCTGCAGGCTGCTCCAGGCCGGTATGCACGA...CGCAGCCCATTTTGAAATGTGCCCTGTGTAGAAGAATGTACAGTGTATTTTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR-3UTR GCA 90 bp TGTAAAATACACTGTACATTCTTCTACACAGGGCACATTTCAAAATGGGCTGCGTCAGCCGGTTATCTCTaGAGCCTGGAAAACCGCACA +
Preference number: 2 (lower is better)
Translates to: CKIHCTFFYTGHISKWAASAGYL*SLENRT
Trigger: TGTGCGGTTTTCCAGGCTGCAGAGATAACCGGCTGA...CGCAGCCCATTTTGAAATGTGCCCTGTGTAGAAGAATGTACAGTGTATTTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR-3UTR CCA 90 bp TGTAAAATACACTGTACATTCTTCTACACAGGGCACATTTCAAAATGGGCTGCGGTTATCTCTGCAGCCTaGAAAACCGCACAGAAGAGG +
Preference number: 2 (lower is better)
Translates to: CKIHCTFFYTGHISKWAAVISAA*KTAQKR
Trigger: CCTCTTCTGTGCGGTTTTCCAGGCTGCAGAGATAAC...CGCAGCCCATTTTGAAATGTGCCCTGTGTAGAAGAATGTACAGTGTATTTTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR-3UTR CCA 90 bp GTACAGCAACTGGTAAGAAACCCCAGTTTTAATACAGTTTATATACGACGTACCCTTCTCCAAGTCCATTaGAACTTGAAAGACCCCCAC +
Preference number: 2 (lower is better)
Translates to: VQQLVRNPSFNTVYIRRTLLQVH*NLKDPH
Trigger: GTGGGGGTCTTTCAAGTTCCAATGGACTTGGAGAAG...GGTACGTCGTATATAAACTGTATTAAAACTGGGGTTTCTTACCAGTTGCTGTAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR GCA 72 bp AGCCACAGGTGCCCTGCTCGGGAACCAGCTGGGTCGTaGATACCGGCCTGGAGCAGCCTGCAGCAGGGGCGC +
Preference number: 3 (lower is better)
Translates to: SHRCPAREPAGS*IPAWSSLQQGR
Trigger: GCGCCCCTGCTGCAGGCTGCTCCAGGCCGGTATGCACGACCCAGCTGGTTCCCGAGCAGGGCACCTGTGGCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR CCA 72 bp CAGAAGAGGGCCGAACATGTTGGCTGCGGTACGAGCTaGGCCCTGTCCACCCAGGAAGAGTGTGGGTCAGTG +
Preference number: 3 (lower is better)
Translates to: QKRAEHVGCGTS*ALSTQEECGSV
Trigger: CACTGACCCACACTCTTCCTGGGTGGACAGGGCCCAGCTCGTACCGCAGCCAACATGTTCGGCCCTCTTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR CCA 72 bp AGCCTGGAAAACCGCACAGAAGAGGGCCGAACATGTTaGCTGCGGTACGAGCTGGGCCCTGTCCACCCAGGA +
Preference number: 3 (lower is better)
Translates to: SLENRTEEGRTC*LRYELGPVHPG
Trigger: TCCTGGGTGGACAGGGCCCAGCTCGTACCGCAGCCAACATGTTCGGCCCTCTTCTGTGCGGTTTTCCAGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR GCA 72 bp TGGAAAACCGCACAGAAGAGGGCCGAACATGTTGGCTaGGGTACGAGCTGGGCCCTGTCCACCCAGGAAGAG +
Preference number: 3 (lower is better)
Translates to: WKTAQKRAEHVG*GTSWALSTQEE
Trigger: CTCTTCCTGGGTGGACAGGGCCCAGCTCGTACCGCAGCCAACATGTTCGGCCCTCTTCTGTGCGGTTTTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR GCA 72 bp CCCCCACCGTTCAGCACTCTGAGTCTAGGCCTCCTTTaGTTTTGCAGGGTGTCCCGAATTCTGCAGATTAGA +
Preference number: 3 (lower is better)
Translates to: PPPFSTLSLGLL*FCRVSRILQIR
Trigger: TCTAATCTGCAGAATTCGGGACACCCTGCAAAAGCAAAGGAGGCCTAGACTCAGAGTGCTGAACGGTGGGGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR-3UTR CAA 90 bp TCAACATCCCTTCTCCAAGTCCATTGGAACTTGAAAGACCCCCACCGTTCAGCAGAGTCTAGGCCTCCTTaGCTTTTGCAGGGTGTCCCG +
Preference number: 3 (lower is better)
Translates to: STSLLQVHWNLKDPHRSAESRPP*LLQGVP
Trigger: CGGGACACCCTGCAAAAGCAAAGGAGGCCTAGACTC...TGCTGAACGGTGGGGGTCTTTCAAGTTCCAATGGACTTGGAGAAGGGATGTTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR TCA 72 bp CACATTTCAAAATGGGCTGCGGGAGCGGGTTCCTGGTaGGCAATGTATTCTATACATTTCTTGGATGGGCTG +
Preference number: 3 (lower is better)
Translates to: HISKWAAGAGSW*AMYSIHFLDGL
Trigger: CAGCCCATCCAAGAAATGTATAGAATACATTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTGAAATGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR GCA 72 bp TACATTCTTCTACACAGGGCACATTTCAAAATGGGCTaGGGGAGCGGGTTCCTGGTGAGCAATGTATTCTAT +
Preference number: 3 (lower is better)
Translates to: YILLHRAHFKMG*GSGFLVSNVFY
Trigger: ATAGAATACATTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTGAAATGTGCCCTGTGTAGAAGAATGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR CCA 72 bp CGGGTTCCTGGTGAGCAATGTATTCTATACATTTCTTaGATGGGCTGCAGGAGTGGATTCCTCATGACCAAT +
Preference number: 3 (lower is better)
Translates to: RVPGEQCILYIS*MGCRSGFLMTN
Trigger: ATTGGTCATGAGGAATCCACTCCTGCAGCCCATCCAAGAAATGTATAGAATACATTGCTCACCAGGAACCCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR CCA 72 bp CCAGTTTTAATACAGTTTATATACGACGTACCAGGGTaGAAGACCCTGATAGGGGCAGAGGTAATATTCAAT +
Preference number: 3 (lower is better)
Translates to: PVLIQFIYDVPG*KTLIGAEVIFN
Trigger: ATTGAATATTACCTCTGCCCCTATCAGGGTCTTCCACCCTGGTACGTCGTATATAAACTGTATTAAAACTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
3UTR CAA 72 bp CAGCCTGGAAAACCGCACAGAAGAGGGCCGAACATGTaGGCTGCGGTACGAGCTGGGCCCTGTCCACCCAGG +
Preference number: 4 (lower is better)
Translates to: QPGKPHRRGPNM*AAVRAGPCPPR
Trigger: CCTGGGTGGACAGGGCCCAGCTCGTACCGCAGCCAACATGTTCGGCCCTCTTCTGTGCGGTTTTCCAGGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR GCA 90 bp TCTACACAGGGCACATTTCAAAATGGGCTGCGGGAGCGGGTTCCTGGTGAGCAACCCCGTCCGAGCCGCTaGTGCCCGGACCGTTGCTCG +
Preference number: 4 (lower is better)
Translates to: STQGTFQNGLRERVPGEQPRPSR*CPDRCS
Trigger: CGAGCAACGGTCCGGGCAGCAGCGGCTCGGACGGGG...TTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTGAAATGTGCCCTGTGTAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR TCA 90 bp CAGTATAGATCAGCCGGTTATCTCTGCAGCCTGGAAAACCGCACAGAAGAGGGCGCGCCTGCCAGCAGATaGGGCGGCGGCCGTGCGCTA +
Preference number: 4 (lower is better)
Translates to: QYRSAGYLCSLENRTEEGAPASR*GGGRAL
Trigger: TAGCGCACGGCCGCCGCCTCATCTGCTGGCAGGCGC...GCCCTCTTCTGTGCGGTTTTCCAGGCTGCAGAGATAACCGGCTGATCTATACTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR TCA 90 bp TCTACACAGGGCACATTTCAAAATGGGCTGCGGGAGCGGGTTCCTGGTGAGCAACGCACACGCAGTCGTTaGGCAGCGCCGCCTTGGGCA +
Preference number: 4 (lower is better)
Translates to: STQGTFQNGLRERVPGEQRTRSR*AAPPWA
Trigger: TGCCCAAGGCGGCGCTGCTCAACGACTGCGTGTGCG...TTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTGAAATGTGCCCTGTGTAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR GCA 90 bp TCTACACAGGGCACATTTCAAAATGGGCTGCGGGAGCGGGTTCCTGGTGAGCAACGTCCGAGCCGCTGCTaGCCGGACCGTTGCTCGCAT +
Preference number: 4 (lower is better)
Translates to: STQGTFQNGLRERVPGEQRPSRC*PDRCSH
Trigger: ATGCGAGCAACGGTCCGGGCAGCAGCGGCTCGGACG...TTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTGAAATGTGCCCTGTGTAGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR GCA 90 bp TCTACACAGGGCACATTTCAAAATGGGCTGCGGGAGCGGGTTCCTGGTGAGCAAGCCGAGCACAGCAGCTaGAGCAGCGCCATCAGGCAC +
Preference number: 4 (lower is better)
Translates to: STQGTFQNGLRERVPGEQAEHSS*SSAIRH
Trigger: GTGCCTGATGGCGCTGCTGCAGCTGCTGTGCTCGGC...TTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTGAAATGTGCCCTGTGTAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR TCA 90 bp TCTACACAGGGCACATTTCAAAATGGGCTGCGGGAGCGGGTTCCTGGTGAGCAATGCAGCGCAGCCCGTTaGAAAGCTTGCCGCAGTAGG +
Preference number: 4 (lower is better)
Translates to: STQGTFQNGLRERVPGEQCSAAR*KACRSR
Trigger: CCTACTGCGGCAAGCTTTTCAACGGGCTGCGCTGCA...TTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTGAAATGTGCCCTGTGTAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR CCA 90 bp ATACAGTTTATATACGACGTACCAGGGTGGAAGACCCTGATAGGGGCAGAGGTAAGCGCCGAGATGCAGTaGCTCGGGCAGCGCCAGCGC +
Preference number: 4 (lower is better)
Translates to: IQFIYDVPGWKTLIGAEVSAEMQ*LGQRQR
Trigger: GCGCTGGCGCTGCCCGAGCCACTGCATCTCGGCGCT...TACCTCTGCCCCTATCAGGGTCTTCCACCCTGGTACGTCGTATATAAACTGTAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR CCA 90 bp TCTACACAGGGCACATTTCAAAATGGGCTGCGGGAGCGGGTTCCTGGTGAGCAACGATGGCGCGCTTGGTaGACCTGCAGTGTTCGTCCT +
Preference number: 4 (lower is better)
Translates to: STQGTFQNGLRERVPGEQRWRAW*TCSVRP
Trigger: AGGACGAACACTGCAGGTCCACCAAGCGCGCCATCG...TTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTGAAATGTGCCCTGTGTAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR GCA 90 bp TCAACATCCCTTCTCCAAGTCCATTGGAACTTGAAAGACCCCCACCGTTCAGCACTGCAGTGTTCGTCCTaGGCGCAGTCGCAGTCCTCC +
Preference number: 4 (lower is better)
Translates to: STSLLQVHWNLKDPHRSALQCSS*AQSQSS
Trigger: GGAGGACTGCGACTGCGCGCAGGACGAACACTGCAG...TGCTGAACGGTGGGGGTCTTTCAAGTTCCAATGGACTTGGAGAAGGGATGTTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR GCA 90 bp AGAAACCCCAGTTTTAATACAGTTTATATACGACGTACCAGGGTGGAAGACCCTCGCTGCTGCTGCTCCTaGGCCCGGGACCGTGGGGCA +
Preference number: 4 (lower is better)
Translates to: RNPSFNTVYIRRTRVEDPRCCCS*ARDRGA
Trigger: TGCCCCACGGTCCCGGGCGCAGGAGCAGCAGCAGCG...AGGGTCTTCCACCCTGGTACGTCGTATATAAACTGTATTAAAACTGGGGTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR CCA 90 bp ATATACGACGTACCAGGGTGGAAGACCCTGATAGGGGCAGAGGTAATATTCAATGGCCCGCGGCGCGTGTaGTTGAGCTGGATAAGCGCC +
Preference number: 4 (lower is better)
Translates to: IYDVPGWKTLIGAEVIFNGPRRV*LSWISA
Trigger: GGCGCTTATCCAGCTCAACCACACGCGCCGCGGGCC...ATTGAATATTACCTCTGCCCCTATCAGGGTCTTCCACCCTGGTACGTCGTATAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR CCA 90 bp CAAAATGGGCTGCGGGAGCGGGTTCCTGGTGAGCAATGTATTCTATACATTTCTGCAGACAGGGCTCGATaGCGCGCTTGGTGGACCTGC +
Preference number: 4 (lower is better)
Translates to: QNGLRERVPGEQCILYISADRAR*RAWWTC
Trigger: GCAGGTCCACCAAGCGCGCCATCGAGCCCTGTCTGC...AGAAATGTATAGAATACATTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR TCA 90 bp AGAAACCCCAGTTTTAATACAGTTTATATACGACGTACCAGGGTGGAAGACCCTAGGCCAGGTAGCGGCTaGGCGCCAGGTTGCAGCGGC +
Preference number: 4 (lower is better)
Translates to: RNPSFNTVYIRRTRVEDPRPGSG*APGCSG
Trigger: GCCGCTGCAACCTGGCGCTCAGCCGCTACCTGGCCT...AGGGTCTTCCACCCTGGTACGTCGTATATAAACTGTATTAAAACTGGGGTTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR TCA 90 bp ATATACGACGTACCAGGGTGGAAGACCCTGATAGGGGCAGAGGTAATATTCAATCCAGCATGTCCTCGATaGCCGCGCGGCACTCGTCTG +
Preference number: 4 (lower is better)
Translates to: IYDVPGWKTLIGAEVIFNPACPR*PRGTRL
Trigger: CAGACGAGTGCCGCGCGGTCATCGAGGACATGCTGG...ATTGAATATTACCTCTGCCCCTATCAGGGTCTTCCACCCTGGTACGTCGTATAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR GCA 90 bp TGTAAAATACACTGTACATTCTTCTACACAGGGCACATTTCAAAATGGGCTGCGTCGTCGTCCAGGGGTTaGTCGCCGCCCGCGGCCCCA +
Preference number: 4 (lower is better)
Translates to: CKIHCTFFYTGHISKWAASSSRG*SPPAAP
Trigger: TGGGGCCGCGGGCGGCGAGCAACCCCTGGACGACGA...CGCAGCCCATTTTGAAATGTGCCCTGTGTAGAAGAATGTACAGTGTATTTTACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR CCA 90 bp CAAAATGGGCTGCGGGAGCGGGTTCCTGGTGAGCAATGTATTCTATACATTTCTGCTCGATGGCGCGCTTaGTGGACCTGCAGTGTTCGT +
Preference number: 4 (lower is better)
Translates to: QNGLRERVPGEQCILYISARWRA*WTCSVR
Trigger: ACGAACACTGCAGGTCCACCAAGCGCGCCATCGAGC...AGAAATGTATAGAATACATTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR TCA 90 bp ATACAGTTTATATACGACGTACCAGGGTGGAAGACCCTGATAGGGGCAGAGGTAGGGCCATGTTCTCTTTaGCCGATTCGCAGATGGGCC +
Preference number: 4 (lower is better)
Translates to: IQFIYDVPGWKTLIGAEVGPCSL*PIRRWA
Trigger: GGCCCATCTGCGAATCGGTCAAAGAGAACATGGCCC...TACCTCTGCCCCTATCAGGGTCTTCCACCCTGGTACGTCGTATATAAACTGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR GCA 90 bp AGAAACCCCAGTTTTAATACAGTTTATATACGACGTACCAGGGTGGAAGACCCTGGCTGTAGGCGTAGCTaGAGTCGGGCTCGCCCTGAC +
Preference number: 4 (lower is better)
Translates to: RNPSFNTVYIRRTRVEDPGCRRS*SRARPD
Trigger: GTCAGGGCGAGCCCGACTGCAGCTACGCCTACAGCC...AGGGTCTTCCACCCTGGTACGTCGTATATAAACTGTATTAAAACTGGGGTTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR GCA 90 bp GTACAGCAACTGGTAAGAAACCCCAGTTTTAATACAGTTTATATACGACGTACCGGCCCACGCTGCTGGTaGGCGGCAGACAGGGCTCGA +
Preference number: 4 (lower is better)
Translates to: VQQLVRNPSFNTVYIRRTGPRCW*AADRAR
Trigger: TCGAGCCCTGTCTGCCGCGCACCAGCAGCGTGGGCC...GGTACGTCGTATATAAACTGTATTAAAACTGGGGTTTCTTACCAGTTGCTGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR GCA 90 bp TGTAAAATACACTGTACATTCTTCTACACAGGGCACATTTCAAAATGGGCTGCGCGCGCTTGGTGGACCTaGAGTGTTCGTCCTGCGCGC +
Preference number: 4 (lower is better)
Translates to: CKIHCTFFYTGHISKWAARAWWT*SVRPAR
Trigger: GCGCGCAGGACGAACACTGCAGGTCCACCAAGCGCG...CGCAGCCCATTTTGAAATGTGCCCTGTGTAGAAGAATGTACAGTGTATTTTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR GCA 90 bp GTACAGCAACTGGTAAGAAACCCCAGTTTTAATACAGTTTATATACGACGTACCCCCAGTGGCCTCCACTaGCGCTGCTGCTGCTCCTGC +
Preference number: 4 (lower is better)
Translates to: VQQLVRNPSFNTVYIRRTPSGLH*RCCCSC
Trigger: GCAGGAGCAGCAGCAGCGGCAGTGGAGGCCACTGGG...GGTACGTCGTATATAAACTGTATTAAAACTGGGGTTTCTTACCAGTTGCTGTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR CCA 90 bp ATATACGACGTACCAGGGTGGAAGACCCTGATAGGGGCAGAGGTAATATTCAATCGCGTGTGGTTGAGCTaGATAAGCGCCGAGATGCAG +
Preference number: 4 (lower is better)
Translates to: IYDVPGWKTLIGAEVIFNRVWLS*ISAEMQ
Trigger: CTGCATCTCGGCGCTTATCCAGCTCAACCACACGCG...ATTGAATATTACCTCTGCCCCTATCAGGGTCTTCCACCCTGGTACGTCGTATAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS GCA 90 bp GCGCCGCCGCCCGGGCGCGCAAGGCCGTCGTCGTCGTCCAGGGGTTaGTCGCCGCCCGCGGCCCCAGCGCGCTGCTCGTCGTCATATTCT +
Preference number: 5 (lower is better)
Translates to: APPPGRARPSSSSRG*SPPAAPARCSSSYS
Trigger: AGAATATGACGACGAGCAGCGCGCTGGGGCCGCGGGCGGCGAGCAACCCCTGGACGACGACGACGGCCTTGCGCGCCCGGGCGGCGGCGC
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS TCA 90 bp TGCAGTCGGGCTCGCCCTGACACTGCAGCAGCGCCTGCCAGCAGATaGGGCGGCGGCCGTGCGCTAGCCCCGAGCCCCGCGGTGCCGAGC +
Preference number: 5 (lower is better)
Translates to: CSRARPDTAAAPASR*GGGRALAPSPAVPS
Trigger: GCTCGGCACCGCGGGGCTCGGGGCTAGCGCACGGCCGCCGCCTCATCTGCTGGCAGGCGCTGCTGCAGTGTCAGGGCGAGCCCGACTGCA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS GCA 90 bp TCCAGGCGCTTCGATTCGCCCAGTGGCCTCCACTGCCGCTGCTGCTaGTCCTGCGCCCGGGACCGTGGGGCAAGTCTCCGCGGCCGCCCG +
Preference number: 5 (lower is better)
Translates to: SRRFDSPSGLHCRCC*SCARDRGASLRGRP
Trigger: CGGGCGGCCGCGGAGACTTGCCCCACGGTCCCGGGCGCAGGAGCAGCAGCAGCGGCAGTGGAGGCCACTGGGCGAATCGAAGCGCCTGGA
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS GCA 90 bp GGGTCCAGGCGCTTCGATTCGCCCAGTGGCCTCCACTGCCGCTGCTaGTGCTCCTGCGCCCGGGACCGTGGGGCAAGTCTCCGCGGCCGC +
Preference number: 5 (lower is better)
Translates to: GSRRFDSPSGLHCRC*CSCARDRGASLRGR
Trigger: GCGGCCGCGGAGACTTGCCCCACGGTCCCGGGCGCAGGAGCAGCAGCAGCGGCAGTGGAGGCCACTGGGCGAATCGAAGCGCCTGGACCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CCA 90 bp AGCAGCGGCCGCCGGACGCGGTGCGGAGCGGAGACGAGGCTCGGGTaGCGGCCGCGGGGCCGCTGGAAAAGTTTGTCCGAGTTCCGCGCA +
Preference number: 5 (lower is better)
Translates to: SSGRRTRCGAETRLG*RPRGRWKSLSEFRA
Trigger: TGCGCGGAACTCGGACAAACTTTTCCAGCGGCCCCGCGGCCGCCACCCGAGCCTCGTCTCCGCTCCGCACCGCGTCCGGCGGCCGCTGCT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223933.2
CDS GCA 90 bp ACGGGGTCCAGGCGCTTCGATTCGCCCAGTGGCCTCCACTGCCGCTaGTGCTGCTCCTGCGCCCGGGACCGTGGGGCAAGTCTCCGCGGC +
Preference number: 5 (lower is better)
Translates to: TGSRRFDSPSGLHCR*CCSCARDRGASLRG
Trigger: GCCGCGGAGACTTGCCCCACGGTCCCGGGCGCAGGAGCAGCAGCAGCGGCAGTGGAGGCCACTGGGCGAATCGAAGCGCCTGGACCCCGT
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CCA 90 bp CAGTCGCAGTCCTCCAGCGCGGGCCCGCGGCGCGTGTGGTTGAGCTaGATAAGCGCCGAGATGCAGTGGCTCGGGCAGCGCCAGCGCGGC +
Preference number: 5 (lower is better)
Translates to: QSQSSSAGPRRVWLS*ISAEMQWLGQRQRG
Trigger: GCCGCGCTGGCGCTGCCCGAGCCACTGCATCTCGGCGCTTATCCAGCTCAACCACACGCGCCGCGGGCCCGCGCTGGAGGACTGCGACTG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS GCA 90 bp AGACAGGGCTCGATGGCGCGCTTGGTGGACCTGCAGTGTTCGTCCTaGGCGCAGTCGCAGTCCTCCAGCGCGGGCCCGCGGCGCGTGTGG +
Preference number: 5 (lower is better)
Translates to: RQGSMARLVDLQCSS*AQSQSSSAGPRRVW
Trigger: CCACACGCGCCGCGGGCCCGCGCTGGAGGACTGCGACTGCGCGCAGGACGAACACTGCAGGTCCACCAAGCGCGCCATCGAGCCCTGTCT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CCA 90 bp TCCTGCGCGCAGTCGCAGTCCTCCAGCGCGGGCCCGCGGCGCGTGTaGTTGAGCTGGATAAGCGCCGAGATGCAGTGGCTCGGGCAGCGC +
Preference number: 5 (lower is better)
Translates to: SCAQSQSSSAGPRRV*LSWISAEMQWLGQR
Trigger: GCGCTGCCCGAGCCACTGCATCTCGGCGCTTATCCAGCTCAACCACACGCGCCGCGGGCCCGCGCTGGAGGACTGCGACTGCGCGCAGGA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS GCA 90 bp TGCTGGTGCGCGGCAGACAGGGCTCGATGGCGCGCTTGGTGGACCTaGAGTGTTCGTCCTGCGCGCAGTCGCAGTCCTCCAGCGCGGGCC +
Preference number: 5 (lower is better)
Translates to: CWCAADRARWRAWWT*SVRPARSRSPPARA
Trigger: GGCCCGCGCTGGAGGACTGCGACTGCGCGCAGGACGAACACTGCAGGTCCACCAAGCGCGCCATCGAGCCCTGTCTGCCGCGCACCAGCA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS GCA 90 bp AGGCAAACGGGGTCCAGGCGCTTCGATTCGCCCAGTGGCCTCCACTaGCGCTGCTGCTGCTCCTGCGCCCGGGACCGTGGGGCAAGTCTC +
Preference number: 5 (lower is better)
Translates to: RQTGSRRFDSPSGLH*RCCCSCARDRGASL
Trigger: GAGACTTGCCCCACGGTCCCGGGCGCAGGAGCAGCAGCAGCGGCAGTGGAGGCCACTGGGCGAATCGAAGCGCCTGGACCCCGTTTGCCT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CCA 90 bp CCACGCTGCTGGTGCGCGGCAGACAGGGCTCGATGGCGCGCTTGGTaGACCTGCAGTGTTCGTCCTGCGCGCAGTCGCAGTCCTCCAGCG +
Preference number: 5 (lower is better)
Translates to: PRCWCAADRARWRAW*TCSVRPARSRSPPA
Trigger: CGCTGGAGGACTGCGACTGCGCGCAGGACGAACACTGCAGGTCCACCAAGCGCGCCATCGAGCCCTGTCTGCCGCGCACCAGCAGCGTGG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CCA 90 bp GGCCCACGCTGCTGGTGCGCGGCAGACAGGGCTCGATGGCGCGCTTaGTGGACCTGCAGTGTTCGTCCTGCGCGCAGTCGCAGTCCTCCA +
Preference number: 5 (lower is better)
Translates to: GPRCWCAADRARWRA*WTCSVRPARSRSPP
Trigger: TGGAGGACTGCGACTGCGCGCAGGACGAACACTGCAGGTCCACCAAGCGCGCCATCGAGCCCTGTCTGCCGCGCACCAGCAGCGTGGGCC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS GCA 90 bp CTAGCACCGGCGCACAAGCCTCGGCGTACTGGCTGTAGGCGTAGCTaGAGTCGGGCTCGCCCTGACACTGCAGCAGCGCCTGCCAGCAGA +
Preference number: 5 (lower is better)
Translates to: LAPAHKPRRTGCRRS*SRARPDTAAAPASR
Trigger: TCTGCTGGCAGGCGCTGCTGCAGTGTCAGGGCGAGCCCGACTGCAGCTACGCCTACAGCCAGTACGCCGAGGCTTGTGCGCCGGTGCTAG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS GCA 90 bp ATTCTTCGTCGTAGTAGTCGTCCAGGCCCCCGTCCGAGCCGCTGCTaGCCGGACCGTTGCTCGCATCTGGGCCGAAGCACAGGCGGGCCA +
Preference number: 5 (lower is better)
Translates to: ILRRSSRPGPRPSRC*PDRCSHLGRSTGGP
Trigger: TGGCCCGCCTGTGCTTCGGCCCAGATGCGAGCAACGGTCCGGGCAGCAGCGGCTCGGACGGGGGCCTGGACGACTACTACGACGAAGAAT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CCA 90 bp CAGGCCCCCGTCCGAGCCGCTGCTGCCCGGACCGTTGCTCGCATCTaGGCCGAAGCACAGGCGGGCCATGTTCTCTTTGACCGATTCGCA +
Preference number: 5 (lower is better)
Translates to: QAPVRAAAARTVARI*AEAQAGHVLFDRFA
Trigger: TGCGAATCGGTCAAAGAGAACATGGCCCGCCTGTGCTTCGGCCCAGATGCGAGCAACGGTCCGGGCAGCAGCGGCTCGGACGGGGGCCTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS GCA 90 bp CATATTCTTCGTCGTAGTAGTCGTCCAGGCCCCCGTCCGAGCCGCTaGTGCCCGGACCGTTGCTCGCATCTGGGCCGAAGCACAGGCGGG +
Preference number: 5 (lower is better)
Translates to: HILRRSSRPGPRPSR*CPDRCSHLGRSTGG
Trigger: CCCGCCTGTGCTTCGGCCCAGATGCGAGCAACGGTCCGGGCAGCAGCGGCTCGGACGGGGGCCTGGACGACTACTACGACGAAGAATATG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS TCA 90 bp CGTTGCTCGCATCTGGGCCGAAGCACAGGCGGGCCATGTTCTCTTTaGCCGATTCGCAGATGGGCCGCTCCAGCCCATCGCACACGCAGT +
Preference number: 5 (lower is better)
Translates to: RCSHLGRSTGGPCSL*PIRRWAAPAHRTRS
Trigger: ACTGCGTGTGCGATGGGCTGGAGCGGCCCATCTGCGAATCGGTCAAAGAGAACATGGCCCGCCTGTGCTTCGGCCCAGATGCGAGCAACG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS-3UTR CAA 90 bp GCTGGCAGTATAGATCAGCCGGTTATCTCTGCAGCCTGGAAAACCGCACAGAAGTCGCACACGCAGTCGTaGAGCAGCGCCGCCTTGGGC +
Preference number: 5 (lower is better)
Translates to: AGSIDQPVISAAWKTAQKSHTQS*SSAALG
Trigger: GCCCAAGGCGGCGCTGCTCAACGACTGCGTGTGCGA...CTTCTGTGCGGTTTTCCAGGCTGCAGAGATAACCGGCTGATCTATACTGCCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR CAA 90 bp ATACAGTTTATATACGACGTACCAGGGTGGAAGACCCTGATAGGGGCAGAGGTACCGCGGCGCGTGTGGTaGAGCTGGATAAGCGCCGAG +
Preference number: 5 (lower is better)
Translates to: IQFIYDVPGWKTLIGAEVPRRVW*SWISAE
Trigger: CTCGGCGCTTATCCAGCTCAACCACACGCGCCGCGG...TACCTCTGCCCCTATCAGGGTCTTCCACCCTGGTACGTCGTATATAAACTGTAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR CAA 90 bp TGTAAAATACACTGTACATTCTTCTACACAGGGCACATTTCAAAATGGGCTGCGCGGCTGAGCGCCAGGTaGCAGCGGCTGTCCCGGTCG +
Preference number: 5 (lower is better)
Translates to: CKIHCTFFYTGHISKWAARLSAR*QRLSRS
Trigger: CGACCGGGACAGCCGCTGCAACCTGGCGCTCAGCCG...CGCAGCCCATTTTGAAATGTGCCCTGTGTAGAAGAATGTACAGTGTATTTTACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR CAA 90 bp AGAAACCCCAGTTTTAATACAGTTTATATACGACGTACCAGGGTGGAAGACCCTTTGAGCAGCGCCGCCTaGGGCACGGCCAGCATGTCC +
Preference number: 5 (lower is better)
Translates to: RNPSFNTVYIRRTRVEDPLSSAA*GTASMS
Trigger: GGACATGCTGGCCGTGCCCAAGGCGGCGCTGCTCAA...AGGGTCTTCCACCCTGGTACGTCGTATATAAACTGTATTAAAACTGGGGTTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS-3UTR CAA 90 bp TGTAAAATACACTGTACATTCTTCTACACAGGGCACATTTCAAAATGGGCTGCGCGGGCCATGTTCTCTTaGACCGATTCGCAGATGGGC +
Preference number: 5 (lower is better)
Translates to: CKIHCTFFYTGHISKWAARAMFS*TDSQMG
Trigger: GCCCATCTGCGAATCGGTCAAAGAGAACATGGCCCG...CGCAGCCCATTTTGAAATGTGCCCTGTGTAGAAGAATGTACAGTGTATTTTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000065086.6
CDS GCA 72 bp GCGCCGGCGGGCCCCGGAGCATCAGCCCCGCCGCGCTaGGCTAGCACCGGCGCACAAGCCTCGGCGTACTGG +
Preference number: 6 (lower is better)
Translates to: APAGPGASAPPR*ASTGAQASAYW
Trigger: CCAGTACGCCGAGGCTTGTGCGCCGGTGCTAGCGCAGCGCGGCGGGGCTGATGCTCCGGGGCCCGCCGGCGC
79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CAA 90 bp AGCGCCGCCGCCCGGGCGCGCAAGGCCGTCGTCGTCGTCCAGGGGTaGCTCGCCGCCCGCGGCCCCAGCGCGCTGCTCGTCGTCATATTC +
Preference number: 6 (lower is better)
Translates to: SAAARARKAVVVVQG*LAARGPSALLVVIF
Trigger: GAATATGACGACGAGCAGCGCGCTGGGGCCGCGGGCGGCGAGCAACCCCTGGACGACGACGACGGCCTTGCGCGCCCGGGCGGCGGCGCT
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS TCA 72 bp GCTCGCCCTGACACTGCAGCAGCGCCTGCCAGCAGATaGGGCGGCGGCCGTGCGCTAGCCCCGAGCCCCGCG +
Preference number: 6 (lower is better)
Translates to: ARPDTAAAPASR*GGGRALAPSPA
Trigger: CGCGGGGCTCGGGGCTAGCGCACGGCCGCCGCCTCATCTGCTGGCAGGCGCTGCTGCAGTGTCAGGGCGAGC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS GCA 72 bp TGCAGCAGCGCCTGCCAGCAGATGAGGCGGCGGCCGTaGGCTAGCCCCGAGCCCCGCGGTGCCGAGCACAGC +
Preference number: 6 (lower is better)
Translates to: CSSACQQMRRRP*ASPEPRGAEHS
Trigger: GCTGTGCTCGGCACCGCGGGGCTCGGGGCTAGCGCACGGCCGCCGCCTCATCTGCTGGCAGGCGCTGCTGCA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS GCA 72 bp CCAGGCCCCCGTCCGAGCCGCTGCTGCCCGGACCGTTaGTCGCATCTGGGCCGAAGCACAGGCGGGCCATGT +
Preference number: 6 (lower is better)
Translates to: PGPRPSRCCPDR*SHLGRSTGGPC
Trigger: ACATGGCCCGCCTGTGCTTCGGCCCAGATGCGAGCAACGGTCCGGGCAGCAGCGGCTCGGACGGGGGCCTGG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CAA 72 bp TCCAGGCCCCCGTCCGAGCCGCTGCTGCCCGGACCGTaGCTCGCATCTGGGCCGAAGCACAGGCGGGCCATG +
Preference number: 6 (lower is better)
Translates to: SRPPSEPLLPGP*LASGPKHRRAM
Trigger: CATGGCCCGCCTGTGCTTCGGCCCAGATGCGAGCAACGGTCCGGGCAGCAGCGGCTCGGACGGGGGCCTGGA
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CAA 90 bp TGCGCGCAGTCGCAGTCCTCCAGCGCGGGCCCGCGGCGCGTGTGGTaGAGCTGGATAAGCGCCGAGATGCAGTGGCTCGGGCAGCGCCAG +
Preference number: 6 (lower is better)
Translates to: CAQSQSSSAGPRRVW*SWISAEMQWLGQRQ
Trigger: CTGGCGCTGCCCGAGCCACTGCATCTCGGCGCTTATCCAGCTCAACCACACGCGCCGCGGGCCCGCGCTGGAGGACTGCGACTGCGCGCA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS TCA 72 bp GCAGCGCCGCCTTGGGCACGGCCAGCATGTCCTCGATaGCCGCGCGGCACTCGTCTGTGCAGCGCAGCCCGT +
Preference number: 6 (lower is better)
Translates to: AAPPWARPACPR*PRGTRLCSAAR
Trigger: ACGGGCTGCGCTGCACAGACGAGTGCCGCGCGGTCATCGAGGACATGCTGGCCGTGCCCAAGGCGGCGCTGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS GCA 72 bp TCGATGGCGCGCTTGGTGGACCTGCAGTGTTCGTCCTaGGCGCAGTCGCAGTCCTCCAGCGCGGGCCCGCGG +
Preference number: 6 (lower is better)
Translates to: SMARLVDLQCSS*AQSQSSSAGPR
Trigger: CCGCGGGCCCGCGCTGGAGGACTGCGACTGCGCGCAGGACGAACACTGCAGGTCCACCAAGCGCGCCATCGA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CCA 72 bp CGCGTGTGGTTGAGCTGGATAAGCGCCGAGATGCAGTaGCTCGGGCAGCGCCAGCGCGGCGAGGACGCGGCC +
Preference number: 6 (lower is better)
Translates to: RVWLSWISAEMQ*LGQRQRGEDAA
Trigger: GGCCGCGTCCTCGCCGCGCTGGCGCTGCCCGAGCCACTGCATCTCGGCGCTTATCCAGCTCAACCACACGCG
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CCA 72 bp TCCTCCAGCGCGGGCCCGCGGCGCGTGTGGTTGAGCTaGATAAGCGCCGAGATGCAGTGGCTCGGGCAGCGC +
Preference number: 6 (lower is better)
Translates to: SSSAGPRRVWLS*ISAEMQWLGQR
Trigger: GCGCTGCCCGAGCCACTGCATCTCGGCGCTTATCCAGCTCAACCACACGCGCCGCGGGCCCGCGCTGGAGGA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CAA 90 bp GGGCCCACGCTGCTGGTGCGCGGCAGACAGGGCTCGATGGCGCGCTaGGTGGACCTGCAGTGTTCGTCCTGCGCGCAGTCGCAGTCCTCC +
Preference number: 6 (lower is better)
Translates to: GPTLLVRGRQGSMAR*VDLQCSSCAQSQSS
Trigger: GGAGGACTGCGACTGCGCGCAGGACGAACACTGCAGGTCCACCAAGCGCGCCATCGAGCCCTGTCTGCCGCGCACCAGCAGCGTGGGCCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS GCA 72 bp CGTCGTAGTAGTCGTCCAGGCCCCCGTCCGAGCCGCTaGTGCCCGGACCGTTGCTCGCATCTGGGCCGAAGC +
Preference number: 6 (lower is better)
Translates to: RRSSRPGPRPSR*CPDRCSHLGRS
Trigger: GCTTCGGCCCAGATGCGAGCAACGGTCCGGGCAGCAGCGGCTCGGACGGGGGCCTGGACGACTACTACGACG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS GCA 72 bp TTCGATTCGCCCAGTGGCCTCCACTGCCGCTGCTGCTaGTCCTGCGCCCGGGACCGTGGGGCAAGTCTCCGC +
Preference number: 6 (lower is better)
Translates to: FDSPSGLHCRCC*SCARDRGASLR
Trigger: GCGGAGACTTGCCCCACGGTCCCGGGCGCAGGAGCAGCAGCAGCGGCAGTGGAGGCCACTGGGCGAATCGAA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS GCA 72 bp CGCTTCGATTCGCCCAGTGGCCTCCACTGCCGCTGCTaGTGCTCCTGCGCCCGGGACCGTGGGGCAAGTCTC +
Preference number: 6 (lower is better)
Translates to: RFDSPSGLHCRC*CSCARDRGASL
Trigger: GAGACTTGCCCCACGGTCCCGGGCGCAGGAGCAGCAGCAGCGGCAGTGGAGGCCACTGGGCGAATCGAAGCG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS GCA 72 bp AGGCGCTTCGATTCGCCCAGTGGCCTCCACTGCCGCTaGTGCTGCTCCTGCGCCCGGGACCGTGGGGCAAGT +
Preference number: 6 (lower is better)
Translates to: RRFDSPSGLHCR*CCSCARDRGAS
Trigger: ACTTGCCCCACGGTCCCGGGCGCAGGAGCAGCAGCAGCGGCAGTGGAGGCCACTGGGCGAATCGAAGCGCCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CCA 72 bp GGCCCACGCTGCTGGTGCGCGGCAGACAGGGCTCGATaGCGCGCTTGGTGGACCTGCAGTGTTCGTCCTGCG +
Preference number: 6 (lower is better)
Translates to: GPRCWCAADRAR*RAWWTCSVRPA
Trigger: CGCAGGACGAACACTGCAGGTCCACCAAGCGCGCCATCGAGCCCTGTCTGCCGCGCACCAGCAGCGTGGGCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CAA 72 bp TCGCAGTCCTCCAGCGCGGGCCCGCGGCGCGTGTGGTaGAGCTGGATAAGCGCCGAGATGCAGTGGCTCGGG +
Preference number: 6 (lower is better)
Translates to: SQSSSAGPRRVW*SWISAEMQWLG
Trigger: CCCGAGCCACTGCATCTCGGCGCTTATCCAGCTCAACCACACGCGCCGCGGGCCCGCGCTGGAGGACTGCGA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS GCA 72 bp CGTAGTAGTCGTCCAGGCCCCCGTCCGAGCCGCTGCTaGCCGGACCGTTGCTCGCATCTGGGCCGAAGCACA +
Preference number: 6 (lower is better)
Translates to: RSSRPGPRPSRC*PDRCSHLGRST
Trigger: TGTGCTTCGGCCCAGATGCGAGCAACGGTCCGGGCAGCAGCGGCTCGGACGGGGGCCTGGACGACTACTACG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CCA 72 bp CAGTCGCAGTCCTCCAGCGCGGGCCCGCGGCGCGTGTaGTTGAGCTGGATAAGCGCCGAGATGCAGTGGCTC +
Preference number: 6 (lower is better)
Translates to: QSQSSSAGPRRV*LSWISAEMQWL
Trigger: GAGCCACTGCATCTCGGCGCTTATCCAGCTCAACCACACGCGCCGCGGGCCCGCGCTGGAGGACTGCGACTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CCA 72 bp TGCTGGTGCGCGGCAGACAGGGCTCGATGGCGCGCTTaGTGGACCTGCAGTGTTCGTCCTGCGCGCAGTCGC +
Preference number: 6 (lower is better)
Translates to: CWCAADRARWRA*WTCSVRPARSR
Trigger: GCGACTGCGCGCAGGACGAACACTGCAGGTCCACCAAGCGCGCCATCGAGCCCTGTCTGCCGCGCACCAGCA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CCA 72 bp GCGGAGACGAGGCTCGGGTGGCGGCCGCGGGGCCGCTaGAAAAGTTTGTCCGAGTTCCGCGCACTTCTGGCA +
Preference number: 6 (lower is better)
Translates to: AETRLGWRPRGR*KSLSEFRALLA
Trigger: TGCCAGAAGTGCGCGGAACTCGGACAAACTTTTCCAGCGGCCCCGCGGCCGCCACCCGAGCCTCGTCTCCGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223933.2
CDS CAA 72 bp CTGCTGGTGCGCGGCAGACAGGGCTCGATGGCGCGCTaGGTGGACCTGCAGTGTTCGTCCTGCGCGCAGTCG +
Preference number: 6 (lower is better)
Translates to: LLVRGRQGSMAR*VDLQCSSCAQS
Trigger: CGACTGCGCGCAGGACGAACACTGCAGGTCCACCAAGCGCGCCATCGAGCCCTGTCTGCCGCGCACCAGCAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CAA 72 bp CAGATGGGCCGCTCCAGCCCATCGCACACGCAGTCGTaGAGCAGCGCCGCCTTGGGCACGGCCAGCATGTCC +
Preference number: 6 (lower is better)
Translates to: QMGRSSPSHTQS*SSAALGTASMS
Trigger: GGACATGCTGGCCGTGCCCAAGGCGGCGCTGCTCAACGACTGCGTGTGCGATGGGCTGGAGCGGCCCATCTG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CAA 72 bp AGGCTCGGGTGGCGGCCGCGGGGCCGCTGGAAAAGTTaGTCCGAGTTCCGCGCACTTCTGGCATGGGCGTCC +
Preference number: 6 (lower is better)
Translates to: RLGWRPRGRWKS*SEFRALLAWAS
Trigger: GGACGCCCATGCCAGAAGTGCGCGGAACTCGGACAAACTTTTCCAGCGGCCCCGCGGCCGCCACCCGAGCCT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000223933.2
CDS TCA 72 bp AGATGGGCCGCTCCAGCCCATCGCACACGCAGTCGTTaGGCAGCGCCGCCTTGGGCACGGCCAGCATGTCCT +
Preference number: 6 (lower is better)
Translates to: RWAAPAHRTRSR*AAPPWARPACP
Trigger: AGGACATGCTGGCCGTGCCCAAGGCGGCGCTGCTCAACGACTGCGTGTGCGATGGGCTGGAGCGGCCCATCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS GCA 72 bp GCGCACAAGCCTCGGCGTACTGGCTGTAGGCGTAGCTaGAGTCGGGCTCGCCCTGACACTGCAGCAGCGCCT +
Preference number: 6 (lower is better)
Translates to: AHKPRRTGCRRS*SRARPDTAAAP
Trigger: AGGCGCTGCTGCAGTGTCAGGGCGAGCCCGACTGCAGCTACGCCTACAGCCAGTACGCCGAGGCTTGTGCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS GCA 72 bp GCGGCAGACAGGGCTCGATGGCGCGCTTGGTGGACCTaGAGTGTTCGTCCTGCGCGCAGTCGCAGTCCTCCA +
Preference number: 6 (lower is better)
Translates to: AADRARWRAWWT*SVRPARSRSPP
Trigger: TGGAGGACTGCGACTGCGCGCAGGACGAACACTGCAGGTCCACCAAGCGCGCCATCGAGCCCTGTCTGCCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CCA 72 bp TGGTGCGCGGCAGACAGGGCTCGATGGCGCGCTTGGTaGACCTGCAGTGTTCGTCCTGCGCGCAGTCGCAGT +
Preference number: 6 (lower is better)
Translates to: WCAADRARWRAW*TCSVRPARSRS
Trigger: ACTGCGACTGCGCGCAGGACGAACACTGCAGGTCCACCAAGCGCGCCATCGAGCCCTGTCTGCCGCGCACCA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CAA 90 bp ACCGATTCGCAGATGGGCCGCTCCAGCCCATCGCACACGCAGTCGTaGAGCAGCGCCGCCTTGGGCACGGCCAGCATGTCCTCGATGACC +
Preference number: 6 (lower is better)
Translates to: TDSQMGRSSPSHTQS*SSAALGTASMSSMT
Trigger: GGTCATCGAGGACATGCTGGCCGTGCCCAAGGCGGCGCTGCTCAACGACTGCGTGTGCGATGGGCTGGAGCGGCCCATCTGCGAATCGGT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CCA 72 bp GTCCGAGCCGCTGCTGCCCGGACCGTTGCTCGCATCTaGGCCGAAGCACAGGCGGGCCATGTTCTCTTTGAC +
Preference number: 6 (lower is better)
Translates to: VRAAAARTVARI*AEAQAGHVLFD
Trigger: GTCAAAGAGAACATGGCCCGCCTGTGCTTCGGCCCAGATGCGAGCAACGGTCCGGGCAGCAGCGGCTCGGAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CAA 90 bp CCGTTGCTCGCATCTGGGCCGAAGCACAGGCGGGCCATGTTCTCTTaGACCGATTCGCAGATGGGCCGCTCCAGCCCATCGCACACGCAG +
Preference number: 6 (lower is better)
Translates to: PLLASGPKHRRAMFS*TDSQMGRSSPSHTQ
Trigger: CTGCGTGTGCGATGGGCTGGAGCGGCCCATCTGCGAATCGGTCAAAGAGAACATGGCCCGCCTGTGCTTCGGCCCAGATGCGAGCAACGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS TCA 72 bp CATCTGGGCCGAAGCACAGGCGGGCCATGTTCTCTTTaGCCGATTCGCAGATGGGCCGCTCCAGCCCATCGC +
Preference number: 6 (lower is better)
Translates to: HLGRSTGGPCSL*PIRRWAAPAHR
Trigger: GCGATGGGCTGGAGCGGCCCATCTGCGAATCGGTCAAAGAGAACATGGCCCGCCTGTGCTTCGGCCCAGATG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2
CDS CAA 72 bp GCATCTGGGCCGAAGCACAGGCGGGCCATGTTCTCTTaGACCGATTCGCAGATGGGCCGCTCCAGCCCATCG +
Preference number: 6 (lower is better)
Translates to: ASGPKHRRAMFS*TDSQMGRSSPS
Trigger: CGATGGGCTGGAGCGGCCCATCTGCGAATCGGTCAAAGAGAACATGGCCCGCCTGTGCTTCGGCCCAGATGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065086.6
ENSMUST00000223933.2