Pregenerated sensors for GAS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000052957Ensembl transcript IDs: ENSMUST00000065086.6, ENSMUST00000223933.2
Found 105 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CCA 90 bp | CCATCTCCGGTCTCCGAGCCACAGGTGCCCTGCTCGGGAACCAGCTaGGTCGTGCATACCGGCCTGGAGCAGCCTGCAGCAGGGGCGCAG | + |
Preference number: 1 (lower is better) Translates to: PSPVSEPQVPCSGTS*VVHTGLEQPAAGAQ Trigger: CTGCGCCCCTGCTGCAGGCTGCTCCAGGCCGGTATGCACGACCCAGCTGGTTCCCGAGCAGGGCACCTGTGGCTCGGAGACCGGAGATGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR CCA 90 bp | TGTTGGCTGCGGTACGAGCTGGGCCCTGTCCACCCAGGAAGAGTGTaGGTCAGTGTTCCCGACCATCTCCGGTCTCCGAGCCACAGGTGC | + |
Preference number: 1 (lower is better) Translates to: CWLRYELGPVHPGRV*VSVPDHLRSPSHRC Trigger: GCACCTGTGGCTCGGAGACCGGAGATGGTCGGGAACACTGACCCACACTCTTCCTGGGTGGACAGGGCCCAGCTCGTACCGCAGCCAACA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR GCA 90 bp | TCTGCAGCCTGGAAAACCGCACAGAAGAGGGCCGAACATGTTGGCTaGGGTACGAGCTGGGCCCTGTCCACCCAGGAAGAGTGTGGGTCA | + |
Preference number: 1 (lower is better) Translates to: SAAWKTAQKRAEHVG*GTSWALSTQEECGS Trigger: TGACCCACACTCTTCCTGGGTGGACAGGGCCCAGCTCGTACCGCAGCCAACATGTTCGGCCCTCTTCTGTGCGGTTTTCCAGGCTGCAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR CCA 90 bp | AAAACCGCACAGAAGAGGGCCGAACATGTTGGCTGCGGTACGAGCTaGGCCCTGTCCACCCAGGAAGAGTGTGGGTCAGTGTTCCCGACC | + |
Preference number: 1 (lower is better) Translates to: KTAQKRAEHVGCGTS*ALSTQEECGSVFPT Trigger: GGTCGGGAACACTGACCCACACTCTTCCTGGGTGGACAGGGCCCAGCTCGTACCGCAGCCAACATGTTCGGCCCTCTTCTGTGCGGTTTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR CCA 90 bp | TATCTCTGCAGCCTGGAAAACCGCACAGAAGAGGGCCGAACATGTTaGCTGCGGTACGAGCTGGGCCCTGTCCACCCAGGAAGAGTGTGG | + |
Preference number: 1 (lower is better) Translates to: YLCSLENRTEEGRTC*LRYELGPVHPGRVW Trigger: CCACACTCTTCCTGGGTGGACAGGGCCCAGCTCGTACCGCAGCCAACATGTTCGGCCCTCTTCTGTGCGGTTTTCCAGGCTGCAGAGATA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR TCA 90 bp | TACACAGGGCACATTTCAAAATGGGCTGCGGGAGCGGGTTCCTGGTaGGCAATGTATTCTATACATTTCTTGGATGGGCTGCAGGAGTGG | + |
Preference number: 1 (lower is better) Translates to: YTGHISKWAAGAGSW*AMYSIHFLDGLQEW Trigger: CCACTCCTGCAGCCCATCCAAGAAATGTATAGAATACATTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTGAAATGTGCCCTGTGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR CCA 90 bp | CTGCGGGAGCGGGTTCCTGGTGAGCAATGTATTCTATACATTTCTTaGATGGGCTGCAGGAGTGGATTCCTCATGACCAATGTATTCTAT | + |
Preference number: 1 (lower is better) Translates to: LRERVPGEQCILYIS*MGCRSGFLMTNVFY Trigger: ATAGAATACATTGGTCATGAGGAATCCACTCCTGCAGCCCATCCAAGAAATGTATAGAATACATTGCTCACCAGGAACCCGCTCCCGCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR GCA 90 bp | AATACACTGTACATTCTTCTACACAGGGCACATTTCAAAATGGGCTaGGGGAGCGGGTTCCTGGTGAGCAATGTATTCTATACATTTCTT | + |
Preference number: 1 (lower is better) Translates to: NTLYILLHRAHFKMG*GSGFLVSNVFYTFL Trigger: AAGAAATGTATAGAATACATTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTGAAATGTGCCCTGTGTAGAAGAATGTACAGTGTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR TCA 90 bp | GTATTCTATACATTTCTTGGATGGGCTGCAGGAGTGGATTCCTCATaGCCAATGTATTCTATACATTTCTTGGATAGGGGAGATACAACA | + |
Preference number: 1 (lower is better) Translates to: VFYTFLGWAAGVDSS*PMYSIHFLDRGDTT Trigger: TGTTGTATCTCCCCTATCCAAGAAATGTATAGAATACATTGGTCATGAGGAATCCACTCCTGCAGCCCATCCAAGAAATGTATAGAATAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR-3UTR GCA 90 bp | TCTACACAGGGCACATTTCAAAATGGGCTGCGGGAGCGGGTTCCTGGTGAGCAAGAGCCACAGGTGCCCTaGTCGGGAACCAGCTGGGTC | + |
Preference number: 2 (lower is better) Translates to: STQGTFQNGLRERVPGEQEPQVP*SGTSWV Trigger: GACCCAGCTGGTTCCCGAGCAGGGCACCTGTGGCTC...TTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTGAAATGTGCCCTGTGTAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR-3UTR CCA 90 bp | ATACAGTTTATATACGACGTACCAGGGTGGAAGACCCTGATAGGGGCAGAGGTAGGCTGCGGTACGAGCTaGGCCCTGTCCACCCAGGAA | + |
Preference number: 2 (lower is better) Translates to: IQFIYDVPGWKTLIGAEVGCGTS*ALSTQE Trigger: TTCCTGGGTGGACAGGGCCCAGCTCGTACCGCAGCC...TACCTCTGCCCCTATCAGGGTCTTCCACCCTGGTACGTCGTATATAAACTGTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR-3UTR CCA 90 bp | TGTAAAATACACTGTACATTCTTCTACACAGGGCACATTTCAAAATGGGCTGCGTCGTGCATACCGGCCTaGAGCAGCCTGCAGCAGGGG | + |
Preference number: 2 (lower is better) Translates to: CKIHCTFFYTGHISKWAASCIPA*SSLQQG Trigger: CCCCTGCTGCAGGCTGCTCCAGGCCGGTATGCACGA...CGCAGCCCATTTTGAAATGTGCCCTGTGTAGAAGAATGTACAGTGTATTTTACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR-3UTR GCA 90 bp | TGTAAAATACACTGTACATTCTTCTACACAGGGCACATTTCAAAATGGGCTGCGTCAGCCGGTTATCTCTaGAGCCTGGAAAACCGCACA | + |
Preference number: 2 (lower is better) Translates to: CKIHCTFFYTGHISKWAASAGYL*SLENRT Trigger: TGTGCGGTTTTCCAGGCTGCAGAGATAACCGGCTGA...CGCAGCCCATTTTGAAATGTGCCCTGTGTAGAAGAATGTACAGTGTATTTTACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR-3UTR CCA 90 bp | TGTAAAATACACTGTACATTCTTCTACACAGGGCACATTTCAAAATGGGCTGCGGTTATCTCTGCAGCCTaGAAAACCGCACAGAAGAGG | + |
Preference number: 2 (lower is better) Translates to: CKIHCTFFYTGHISKWAAVISAA*KTAQKR Trigger: CCTCTTCTGTGCGGTTTTCCAGGCTGCAGAGATAAC...CGCAGCCCATTTTGAAATGTGCCCTGTGTAGAAGAATGTACAGTGTATTTTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR-3UTR CCA 90 bp | GTACAGCAACTGGTAAGAAACCCCAGTTTTAATACAGTTTATATACGACGTACCCTTCTCCAAGTCCATTaGAACTTGAAAGACCCCCAC | + |
Preference number: 2 (lower is better) Translates to: VQQLVRNPSFNTVYIRRTLLQVH*NLKDPH Trigger: GTGGGGGTCTTTCAAGTTCCAATGGACTTGGAGAAG...GGTACGTCGTATATAAACTGTATTAAAACTGGGGTTTCTTACCAGTTGCTGTAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR GCA 72 bp | AGCCACAGGTGCCCTGCTCGGGAACCAGCTGGGTCGTaGATACCGGCCTGGAGCAGCCTGCAGCAGGGGCGC | + |
Preference number: 3 (lower is better) Translates to: SHRCPAREPAGS*IPAWSSLQQGR Trigger: GCGCCCCTGCTGCAGGCTGCTCCAGGCCGGTATGCACGACCCAGCTGGTTCCCGAGCAGGGCACCTGTGGCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR CCA 72 bp | CAGAAGAGGGCCGAACATGTTGGCTGCGGTACGAGCTaGGCCCTGTCCACCCAGGAAGAGTGTGGGTCAGTG | + |
Preference number: 3 (lower is better) Translates to: QKRAEHVGCGTS*ALSTQEECGSV Trigger: CACTGACCCACACTCTTCCTGGGTGGACAGGGCCCAGCTCGTACCGCAGCCAACATGTTCGGCCCTCTTCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR CCA 72 bp | AGCCTGGAAAACCGCACAGAAGAGGGCCGAACATGTTaGCTGCGGTACGAGCTGGGCCCTGTCCACCCAGGA | + |
Preference number: 3 (lower is better) Translates to: SLENRTEEGRTC*LRYELGPVHPG Trigger: TCCTGGGTGGACAGGGCCCAGCTCGTACCGCAGCCAACATGTTCGGCCCTCTTCTGTGCGGTTTTCCAGGCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR GCA 72 bp | TGGAAAACCGCACAGAAGAGGGCCGAACATGTTGGCTaGGGTACGAGCTGGGCCCTGTCCACCCAGGAAGAG | + |
Preference number: 3 (lower is better) Translates to: WKTAQKRAEHVG*GTSWALSTQEE Trigger: CTCTTCCTGGGTGGACAGGGCCCAGCTCGTACCGCAGCCAACATGTTCGGCCCTCTTCTGTGCGGTTTTCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR GCA 72 bp | CCCCCACCGTTCAGCACTCTGAGTCTAGGCCTCCTTTaGTTTTGCAGGGTGTCCCGAATTCTGCAGATTAGA | + |
Preference number: 3 (lower is better) Translates to: PPPFSTLSLGLL*FCRVSRILQIR Trigger: TCTAATCTGCAGAATTCGGGACACCCTGCAAAAGCAAAGGAGGCCTAGACTCAGAGTGCTGAACGGTGGGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR-3UTR CAA 90 bp | TCAACATCCCTTCTCCAAGTCCATTGGAACTTGAAAGACCCCCACCGTTCAGCAGAGTCTAGGCCTCCTTaGCTTTTGCAGGGTGTCCCG | + |
Preference number: 3 (lower is better) Translates to: STSLLQVHWNLKDPHRSAESRPP*LLQGVP Trigger: CGGGACACCCTGCAAAAGCAAAGGAGGCCTAGACTC...TGCTGAACGGTGGGGGTCTTTCAAGTTCCAATGGACTTGGAGAAGGGATGTTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR TCA 72 bp | CACATTTCAAAATGGGCTGCGGGAGCGGGTTCCTGGTaGGCAATGTATTCTATACATTTCTTGGATGGGCTG | + |
Preference number: 3 (lower is better) Translates to: HISKWAAGAGSW*AMYSIHFLDGL Trigger: CAGCCCATCCAAGAAATGTATAGAATACATTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTGAAATGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR GCA 72 bp | TACATTCTTCTACACAGGGCACATTTCAAAATGGGCTaGGGGAGCGGGTTCCTGGTGAGCAATGTATTCTAT | + |
Preference number: 3 (lower is better) Translates to: YILLHRAHFKMG*GSGFLVSNVFY Trigger: ATAGAATACATTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTGAAATGTGCCCTGTGTAGAAGAATGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR CCA 72 bp | CGGGTTCCTGGTGAGCAATGTATTCTATACATTTCTTaGATGGGCTGCAGGAGTGGATTCCTCATGACCAAT | + |
Preference number: 3 (lower is better) Translates to: RVPGEQCILYIS*MGCRSGFLMTN Trigger: ATTGGTCATGAGGAATCCACTCCTGCAGCCCATCCAAGAAATGTATAGAATACATTGCTCACCAGGAACCCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR CCA 72 bp | CCAGTTTTAATACAGTTTATATACGACGTACCAGGGTaGAAGACCCTGATAGGGGCAGAGGTAATATTCAAT | + |
Preference number: 3 (lower is better) Translates to: PVLIQFIYDVPG*KTLIGAEVIFN Trigger: ATTGAATATTACCTCTGCCCCTATCAGGGTCTTCCACCCTGGTACGTCGTATATAAACTGTATTAAAACTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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3UTR CAA 72 bp | CAGCCTGGAAAACCGCACAGAAGAGGGCCGAACATGTaGGCTGCGGTACGAGCTGGGCCCTGTCCACCCAGG | + |
Preference number: 4 (lower is better) Translates to: QPGKPHRRGPNM*AAVRAGPCPPR Trigger: CCTGGGTGGACAGGGCCCAGCTCGTACCGCAGCCAACATGTTCGGCCCTCTTCTGTGCGGTTTTCCAGGCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR GCA 90 bp | TCTACACAGGGCACATTTCAAAATGGGCTGCGGGAGCGGGTTCCTGGTGAGCAACCCCGTCCGAGCCGCTaGTGCCCGGACCGTTGCTCG | + |
Preference number: 4 (lower is better) Translates to: STQGTFQNGLRERVPGEQPRPSR*CPDRCS Trigger: CGAGCAACGGTCCGGGCAGCAGCGGCTCGGACGGGG...TTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTGAAATGTGCCCTGTGTAGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR TCA 90 bp | CAGTATAGATCAGCCGGTTATCTCTGCAGCCTGGAAAACCGCACAGAAGAGGGCGCGCCTGCCAGCAGATaGGGCGGCGGCCGTGCGCTA | + |
Preference number: 4 (lower is better) Translates to: QYRSAGYLCSLENRTEEGAPASR*GGGRAL Trigger: TAGCGCACGGCCGCCGCCTCATCTGCTGGCAGGCGC...GCCCTCTTCTGTGCGGTTTTCCAGGCTGCAGAGATAACCGGCTGATCTATACTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR TCA 90 bp | TCTACACAGGGCACATTTCAAAATGGGCTGCGGGAGCGGGTTCCTGGTGAGCAACGCACACGCAGTCGTTaGGCAGCGCCGCCTTGGGCA | + |
Preference number: 4 (lower is better) Translates to: STQGTFQNGLRERVPGEQRTRSR*AAPPWA Trigger: TGCCCAAGGCGGCGCTGCTCAACGACTGCGTGTGCG...TTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTGAAATGTGCCCTGTGTAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR GCA 90 bp | TCTACACAGGGCACATTTCAAAATGGGCTGCGGGAGCGGGTTCCTGGTGAGCAACGTCCGAGCCGCTGCTaGCCGGACCGTTGCTCGCAT | + |
Preference number: 4 (lower is better) Translates to: STQGTFQNGLRERVPGEQRPSRC*PDRCSH Trigger: ATGCGAGCAACGGTCCGGGCAGCAGCGGCTCGGACG...TTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTGAAATGTGCCCTGTGTAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR GCA 90 bp | TCTACACAGGGCACATTTCAAAATGGGCTGCGGGAGCGGGTTCCTGGTGAGCAAGCCGAGCACAGCAGCTaGAGCAGCGCCATCAGGCAC | + |
Preference number: 4 (lower is better) Translates to: STQGTFQNGLRERVPGEQAEHSS*SSAIRH Trigger: GTGCCTGATGGCGCTGCTGCAGCTGCTGTGCTCGGC...TTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTGAAATGTGCCCTGTGTAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR TCA 90 bp | TCTACACAGGGCACATTTCAAAATGGGCTGCGGGAGCGGGTTCCTGGTGAGCAATGCAGCGCAGCCCGTTaGAAAGCTTGCCGCAGTAGG | + |
Preference number: 4 (lower is better) Translates to: STQGTFQNGLRERVPGEQCSAAR*KACRSR Trigger: CCTACTGCGGCAAGCTTTTCAACGGGCTGCGCTGCA...TTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTGAAATGTGCCCTGTGTAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR CCA 90 bp | ATACAGTTTATATACGACGTACCAGGGTGGAAGACCCTGATAGGGGCAGAGGTAAGCGCCGAGATGCAGTaGCTCGGGCAGCGCCAGCGC | + |
Preference number: 4 (lower is better) Translates to: IQFIYDVPGWKTLIGAEVSAEMQ*LGQRQR Trigger: GCGCTGGCGCTGCCCGAGCCACTGCATCTCGGCGCT...TACCTCTGCCCCTATCAGGGTCTTCCACCCTGGTACGTCGTATATAAACTGTAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR CCA 90 bp | TCTACACAGGGCACATTTCAAAATGGGCTGCGGGAGCGGGTTCCTGGTGAGCAACGATGGCGCGCTTGGTaGACCTGCAGTGTTCGTCCT | + |
Preference number: 4 (lower is better) Translates to: STQGTFQNGLRERVPGEQRWRAW*TCSVRP Trigger: AGGACGAACACTGCAGGTCCACCAAGCGCGCCATCG...TTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTGAAATGTGCCCTGTGTAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR GCA 90 bp | TCAACATCCCTTCTCCAAGTCCATTGGAACTTGAAAGACCCCCACCGTTCAGCACTGCAGTGTTCGTCCTaGGCGCAGTCGCAGTCCTCC | + |
Preference number: 4 (lower is better) Translates to: STSLLQVHWNLKDPHRSALQCSS*AQSQSS Trigger: GGAGGACTGCGACTGCGCGCAGGACGAACACTGCAG...TGCTGAACGGTGGGGGTCTTTCAAGTTCCAATGGACTTGGAGAAGGGATGTTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR GCA 90 bp | AGAAACCCCAGTTTTAATACAGTTTATATACGACGTACCAGGGTGGAAGACCCTCGCTGCTGCTGCTCCTaGGCCCGGGACCGTGGGGCA | + |
Preference number: 4 (lower is better) Translates to: RNPSFNTVYIRRTRVEDPRCCCS*ARDRGA Trigger: TGCCCCACGGTCCCGGGCGCAGGAGCAGCAGCAGCG...AGGGTCTTCCACCCTGGTACGTCGTATATAAACTGTATTAAAACTGGGGTTTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR CCA 90 bp | ATATACGACGTACCAGGGTGGAAGACCCTGATAGGGGCAGAGGTAATATTCAATGGCCCGCGGCGCGTGTaGTTGAGCTGGATAAGCGCC | + |
Preference number: 4 (lower is better) Translates to: IYDVPGWKTLIGAEVIFNGPRRV*LSWISA Trigger: GGCGCTTATCCAGCTCAACCACACGCGCCGCGGGCC...ATTGAATATTACCTCTGCCCCTATCAGGGTCTTCCACCCTGGTACGTCGTATAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR CCA 90 bp | CAAAATGGGCTGCGGGAGCGGGTTCCTGGTGAGCAATGTATTCTATACATTTCTGCAGACAGGGCTCGATaGCGCGCTTGGTGGACCTGC | + |
Preference number: 4 (lower is better) Translates to: QNGLRERVPGEQCILYISADRAR*RAWWTC Trigger: GCAGGTCCACCAAGCGCGCCATCGAGCCCTGTCTGC...AGAAATGTATAGAATACATTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR TCA 90 bp | AGAAACCCCAGTTTTAATACAGTTTATATACGACGTACCAGGGTGGAAGACCCTAGGCCAGGTAGCGGCTaGGCGCCAGGTTGCAGCGGC | + |
Preference number: 4 (lower is better) Translates to: RNPSFNTVYIRRTRVEDPRPGSG*APGCSG Trigger: GCCGCTGCAACCTGGCGCTCAGCCGCTACCTGGCCT...AGGGTCTTCCACCCTGGTACGTCGTATATAAACTGTATTAAAACTGGGGTTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR TCA 90 bp | ATATACGACGTACCAGGGTGGAAGACCCTGATAGGGGCAGAGGTAATATTCAATCCAGCATGTCCTCGATaGCCGCGCGGCACTCGTCTG | + |
Preference number: 4 (lower is better) Translates to: IYDVPGWKTLIGAEVIFNPACPR*PRGTRL Trigger: CAGACGAGTGCCGCGCGGTCATCGAGGACATGCTGG...ATTGAATATTACCTCTGCCCCTATCAGGGTCTTCCACCCTGGTACGTCGTATAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR GCA 90 bp | TGTAAAATACACTGTACATTCTTCTACACAGGGCACATTTCAAAATGGGCTGCGTCGTCGTCCAGGGGTTaGTCGCCGCCCGCGGCCCCA | + |
Preference number: 4 (lower is better) Translates to: CKIHCTFFYTGHISKWAASSSRG*SPPAAP Trigger: TGGGGCCGCGGGCGGCGAGCAACCCCTGGACGACGA...CGCAGCCCATTTTGAAATGTGCCCTGTGTAGAAGAATGTACAGTGTATTTTACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR CCA 90 bp | CAAAATGGGCTGCGGGAGCGGGTTCCTGGTGAGCAATGTATTCTATACATTTCTGCTCGATGGCGCGCTTaGTGGACCTGCAGTGTTCGT | + |
Preference number: 4 (lower is better) Translates to: QNGLRERVPGEQCILYISARWRA*WTCSVR Trigger: ACGAACACTGCAGGTCCACCAAGCGCGCCATCGAGC...AGAAATGTATAGAATACATTGCTCACCAGGAACCCGCTCCCGCAGCCCATTTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR TCA 90 bp | ATACAGTTTATATACGACGTACCAGGGTGGAAGACCCTGATAGGGGCAGAGGTAGGGCCATGTTCTCTTTaGCCGATTCGCAGATGGGCC | + |
Preference number: 4 (lower is better) Translates to: IQFIYDVPGWKTLIGAEVGPCSL*PIRRWA Trigger: GGCCCATCTGCGAATCGGTCAAAGAGAACATGGCCC...TACCTCTGCCCCTATCAGGGTCTTCCACCCTGGTACGTCGTATATAAACTGTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR GCA 90 bp | AGAAACCCCAGTTTTAATACAGTTTATATACGACGTACCAGGGTGGAAGACCCTGGCTGTAGGCGTAGCTaGAGTCGGGCTCGCCCTGAC | + |
Preference number: 4 (lower is better) Translates to: RNPSFNTVYIRRTRVEDPGCRRS*SRARPD Trigger: GTCAGGGCGAGCCCGACTGCAGCTACGCCTACAGCC...AGGGTCTTCCACCCTGGTACGTCGTATATAAACTGTATTAAAACTGGGGTTTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR GCA 90 bp | GTACAGCAACTGGTAAGAAACCCCAGTTTTAATACAGTTTATATACGACGTACCGGCCCACGCTGCTGGTaGGCGGCAGACAGGGCTCGA | + |
Preference number: 4 (lower is better) Translates to: VQQLVRNPSFNTVYIRRTGPRCW*AADRAR Trigger: TCGAGCCCTGTCTGCCGCGCACCAGCAGCGTGGGCC...GGTACGTCGTATATAAACTGTATTAAAACTGGGGTTTCTTACCAGTTGCTGTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR GCA 90 bp | TGTAAAATACACTGTACATTCTTCTACACAGGGCACATTTCAAAATGGGCTGCGCGCGCTTGGTGGACCTaGAGTGTTCGTCCTGCGCGC | + |
Preference number: 4 (lower is better) Translates to: CKIHCTFFYTGHISKWAARAWWT*SVRPAR Trigger: GCGCGCAGGACGAACACTGCAGGTCCACCAAGCGCG...CGCAGCCCATTTTGAAATGTGCCCTGTGTAGAAGAATGTACAGTGTATTTTACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR GCA 90 bp | GTACAGCAACTGGTAAGAAACCCCAGTTTTAATACAGTTTATATACGACGTACCCCCAGTGGCCTCCACTaGCGCTGCTGCTGCTCCTGC | + |
Preference number: 4 (lower is better) Translates to: VQQLVRNPSFNTVYIRRTPSGLH*RCCCSC Trigger: GCAGGAGCAGCAGCAGCGGCAGTGGAGGCCACTGGG...GGTACGTCGTATATAAACTGTATTAAAACTGGGGTTTCTTACCAGTTGCTGTAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR CCA 90 bp | ATATACGACGTACCAGGGTGGAAGACCCTGATAGGGGCAGAGGTAATATTCAATCGCGTGTGGTTGAGCTaGATAAGCGCCGAGATGCAG | + |
Preference number: 4 (lower is better) Translates to: IYDVPGWKTLIGAEVIFNRVWLS*ISAEMQ Trigger: CTGCATCTCGGCGCTTATCCAGCTCAACCACACGCG...ATTGAATATTACCTCTGCCCCTATCAGGGTCTTCCACCCTGGTACGTCGTATAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS GCA 90 bp | GCGCCGCCGCCCGGGCGCGCAAGGCCGTCGTCGTCGTCCAGGGGTTaGTCGCCGCCCGCGGCCCCAGCGCGCTGCTCGTCGTCATATTCT | + |
Preference number: 5 (lower is better) Translates to: APPPGRARPSSSSRG*SPPAAPARCSSSYS Trigger: AGAATATGACGACGAGCAGCGCGCTGGGGCCGCGGGCGGCGAGCAACCCCTGGACGACGACGACGGCCTTGCGCGCCCGGGCGGCGGCGC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS TCA 90 bp | TGCAGTCGGGCTCGCCCTGACACTGCAGCAGCGCCTGCCAGCAGATaGGGCGGCGGCCGTGCGCTAGCCCCGAGCCCCGCGGTGCCGAGC | + |
Preference number: 5 (lower is better) Translates to: CSRARPDTAAAPASR*GGGRALAPSPAVPS Trigger: GCTCGGCACCGCGGGGCTCGGGGCTAGCGCACGGCCGCCGCCTCATCTGCTGGCAGGCGCTGCTGCAGTGTCAGGGCGAGCCCGACTGCA 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS GCA 90 bp | TCCAGGCGCTTCGATTCGCCCAGTGGCCTCCACTGCCGCTGCTGCTaGTCCTGCGCCCGGGACCGTGGGGCAAGTCTCCGCGGCCGCCCG | + |
Preference number: 5 (lower is better) Translates to: SRRFDSPSGLHCRCC*SCARDRGASLRGRP Trigger: CGGGCGGCCGCGGAGACTTGCCCCACGGTCCCGGGCGCAGGAGCAGCAGCAGCGGCAGTGGAGGCCACTGGGCGAATCGAAGCGCCTGGA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS GCA 90 bp | GGGTCCAGGCGCTTCGATTCGCCCAGTGGCCTCCACTGCCGCTGCTaGTGCTCCTGCGCCCGGGACCGTGGGGCAAGTCTCCGCGGCCGC | + |
Preference number: 5 (lower is better) Translates to: GSRRFDSPSGLHCRC*CSCARDRGASLRGR Trigger: GCGGCCGCGGAGACTTGCCCCACGGTCCCGGGCGCAGGAGCAGCAGCAGCGGCAGTGGAGGCCACTGGGCGAATCGAAGCGCCTGGACCC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CCA 90 bp | AGCAGCGGCCGCCGGACGCGGTGCGGAGCGGAGACGAGGCTCGGGTaGCGGCCGCGGGGCCGCTGGAAAAGTTTGTCCGAGTTCCGCGCA | + |
Preference number: 5 (lower is better) Translates to: SSGRRTRCGAETRLG*RPRGRWKSLSEFRA Trigger: TGCGCGGAACTCGGACAAACTTTTCCAGCGGCCCCGCGGCCGCCACCCGAGCCTCGTCTCCGCTCCGCACCGCGTCCGGCGGCCGCTGCT 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223933.2 |
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CDS GCA 90 bp | ACGGGGTCCAGGCGCTTCGATTCGCCCAGTGGCCTCCACTGCCGCTaGTGCTGCTCCTGCGCCCGGGACCGTGGGGCAAGTCTCCGCGGC | + |
Preference number: 5 (lower is better) Translates to: TGSRRFDSPSGLHCR*CCSCARDRGASLRG Trigger: GCCGCGGAGACTTGCCCCACGGTCCCGGGCGCAGGAGCAGCAGCAGCGGCAGTGGAGGCCACTGGGCGAATCGAAGCGCCTGGACCCCGT 73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CCA 90 bp | CAGTCGCAGTCCTCCAGCGCGGGCCCGCGGCGCGTGTGGTTGAGCTaGATAAGCGCCGAGATGCAGTGGCTCGGGCAGCGCCAGCGCGGC | + |
Preference number: 5 (lower is better) Translates to: QSQSSSAGPRRVWLS*ISAEMQWLGQRQRG Trigger: GCCGCGCTGGCGCTGCCCGAGCCACTGCATCTCGGCGCTTATCCAGCTCAACCACACGCGCCGCGGGCCCGCGCTGGAGGACTGCGACTG 73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS GCA 90 bp | AGACAGGGCTCGATGGCGCGCTTGGTGGACCTGCAGTGTTCGTCCTaGGCGCAGTCGCAGTCCTCCAGCGCGGGCCCGCGGCGCGTGTGG | + |
Preference number: 5 (lower is better) Translates to: RQGSMARLVDLQCSS*AQSQSSSAGPRRVW Trigger: CCACACGCGCCGCGGGCCCGCGCTGGAGGACTGCGACTGCGCGCAGGACGAACACTGCAGGTCCACCAAGCGCGCCATCGAGCCCTGTCT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CCA 90 bp | TCCTGCGCGCAGTCGCAGTCCTCCAGCGCGGGCCCGCGGCGCGTGTaGTTGAGCTGGATAAGCGCCGAGATGCAGTGGCTCGGGCAGCGC | + |
Preference number: 5 (lower is better) Translates to: SCAQSQSSSAGPRRV*LSWISAEMQWLGQR Trigger: GCGCTGCCCGAGCCACTGCATCTCGGCGCTTATCCAGCTCAACCACACGCGCCGCGGGCCCGCGCTGGAGGACTGCGACTGCGCGCAGGA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS GCA 90 bp | TGCTGGTGCGCGGCAGACAGGGCTCGATGGCGCGCTTGGTGGACCTaGAGTGTTCGTCCTGCGCGCAGTCGCAGTCCTCCAGCGCGGGCC | + |
Preference number: 5 (lower is better) Translates to: CWCAADRARWRAWWT*SVRPARSRSPPARA Trigger: GGCCCGCGCTGGAGGACTGCGACTGCGCGCAGGACGAACACTGCAGGTCCACCAAGCGCGCCATCGAGCCCTGTCTGCCGCGCACCAGCA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS GCA 90 bp | AGGCAAACGGGGTCCAGGCGCTTCGATTCGCCCAGTGGCCTCCACTaGCGCTGCTGCTGCTCCTGCGCCCGGGACCGTGGGGCAAGTCTC | + |
Preference number: 5 (lower is better) Translates to: RQTGSRRFDSPSGLH*RCCCSCARDRGASL Trigger: GAGACTTGCCCCACGGTCCCGGGCGCAGGAGCAGCAGCAGCGGCAGTGGAGGCCACTGGGCGAATCGAAGCGCCTGGACCCCGTTTGCCT 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CCA 90 bp | CCACGCTGCTGGTGCGCGGCAGACAGGGCTCGATGGCGCGCTTGGTaGACCTGCAGTGTTCGTCCTGCGCGCAGTCGCAGTCCTCCAGCG | + |
Preference number: 5 (lower is better) Translates to: PRCWCAADRARWRAW*TCSVRPARSRSPPA Trigger: CGCTGGAGGACTGCGACTGCGCGCAGGACGAACACTGCAGGTCCACCAAGCGCGCCATCGAGCCCTGTCTGCCGCGCACCAGCAGCGTGG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CCA 90 bp | GGCCCACGCTGCTGGTGCGCGGCAGACAGGGCTCGATGGCGCGCTTaGTGGACCTGCAGTGTTCGTCCTGCGCGCAGTCGCAGTCCTCCA | + |
Preference number: 5 (lower is better) Translates to: GPRCWCAADRARWRA*WTCSVRPARSRSPP Trigger: TGGAGGACTGCGACTGCGCGCAGGACGAACACTGCAGGTCCACCAAGCGCGCCATCGAGCCCTGTCTGCCGCGCACCAGCAGCGTGGGCC 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS GCA 90 bp | CTAGCACCGGCGCACAAGCCTCGGCGTACTGGCTGTAGGCGTAGCTaGAGTCGGGCTCGCCCTGACACTGCAGCAGCGCCTGCCAGCAGA | + |
Preference number: 5 (lower is better) Translates to: LAPAHKPRRTGCRRS*SRARPDTAAAPASR Trigger: TCTGCTGGCAGGCGCTGCTGCAGTGTCAGGGCGAGCCCGACTGCAGCTACGCCTACAGCCAGTACGCCGAGGCTTGTGCGCCGGTGCTAG 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS GCA 90 bp | ATTCTTCGTCGTAGTAGTCGTCCAGGCCCCCGTCCGAGCCGCTGCTaGCCGGACCGTTGCTCGCATCTGGGCCGAAGCACAGGCGGGCCA | + |
Preference number: 5 (lower is better) Translates to: ILRRSSRPGPRPSRC*PDRCSHLGRSTGGP Trigger: TGGCCCGCCTGTGCTTCGGCCCAGATGCGAGCAACGGTCCGGGCAGCAGCGGCTCGGACGGGGGCCTGGACGACTACTACGACGAAGAAT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CCA 90 bp | CAGGCCCCCGTCCGAGCCGCTGCTGCCCGGACCGTTGCTCGCATCTaGGCCGAAGCACAGGCGGGCCATGTTCTCTTTGACCGATTCGCA | + |
Preference number: 5 (lower is better) Translates to: QAPVRAAAARTVARI*AEAQAGHVLFDRFA Trigger: TGCGAATCGGTCAAAGAGAACATGGCCCGCCTGTGCTTCGGCCCAGATGCGAGCAACGGTCCGGGCAGCAGCGGCTCGGACGGGGGCCTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS GCA 90 bp | CATATTCTTCGTCGTAGTAGTCGTCCAGGCCCCCGTCCGAGCCGCTaGTGCCCGGACCGTTGCTCGCATCTGGGCCGAAGCACAGGCGGG | + |
Preference number: 5 (lower is better) Translates to: HILRRSSRPGPRPSR*CPDRCSHLGRSTGG Trigger: CCCGCCTGTGCTTCGGCCCAGATGCGAGCAACGGTCCGGGCAGCAGCGGCTCGGACGGGGGCCTGGACGACTACTACGACGAAGAATATG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS TCA 90 bp | CGTTGCTCGCATCTGGGCCGAAGCACAGGCGGGCCATGTTCTCTTTaGCCGATTCGCAGATGGGCCGCTCCAGCCCATCGCACACGCAGT | + |
Preference number: 5 (lower is better) Translates to: RCSHLGRSTGGPCSL*PIRRWAAPAHRTRS Trigger: ACTGCGTGTGCGATGGGCTGGAGCGGCCCATCTGCGAATCGGTCAAAGAGAACATGGCCCGCCTGTGCTTCGGCCCAGATGCGAGCAACG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS-3UTR CAA 90 bp | GCTGGCAGTATAGATCAGCCGGTTATCTCTGCAGCCTGGAAAACCGCACAGAAGTCGCACACGCAGTCGTaGAGCAGCGCCGCCTTGGGC | + |
Preference number: 5 (lower is better) Translates to: AGSIDQPVISAAWKTAQKSHTQS*SSAALG Trigger: GCCCAAGGCGGCGCTGCTCAACGACTGCGTGTGCGA...CTTCTGTGCGGTTTTCCAGGCTGCAGAGATAACCGGCTGATCTATACTGCCAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR CAA 90 bp | ATACAGTTTATATACGACGTACCAGGGTGGAAGACCCTGATAGGGGCAGAGGTACCGCGGCGCGTGTGGTaGAGCTGGATAAGCGCCGAG | + |
Preference number: 5 (lower is better) Translates to: IQFIYDVPGWKTLIGAEVPRRVW*SWISAE Trigger: CTCGGCGCTTATCCAGCTCAACCACACGCGCCGCGG...TACCTCTGCCCCTATCAGGGTCTTCCACCCTGGTACGTCGTATATAAACTGTAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR CAA 90 bp | TGTAAAATACACTGTACATTCTTCTACACAGGGCACATTTCAAAATGGGCTGCGCGGCTGAGCGCCAGGTaGCAGCGGCTGTCCCGGTCG | + |
Preference number: 5 (lower is better) Translates to: CKIHCTFFYTGHISKWAARLSAR*QRLSRS Trigger: CGACCGGGACAGCCGCTGCAACCTGGCGCTCAGCCG...CGCAGCCCATTTTGAAATGTGCCCTGTGTAGAAGAATGTACAGTGTATTTTACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR CAA 90 bp | AGAAACCCCAGTTTTAATACAGTTTATATACGACGTACCAGGGTGGAAGACCCTTTGAGCAGCGCCGCCTaGGGCACGGCCAGCATGTCC | + |
Preference number: 5 (lower is better) Translates to: RNPSFNTVYIRRTRVEDPLSSAA*GTASMS Trigger: GGACATGCTGGCCGTGCCCAAGGCGGCGCTGCTCAA...AGGGTCTTCCACCCTGGTACGTCGTATATAAACTGTATTAAAACTGGGGTTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS-3UTR CAA 90 bp | TGTAAAATACACTGTACATTCTTCTACACAGGGCACATTTCAAAATGGGCTGCGCGGGCCATGTTCTCTTaGACCGATTCGCAGATGGGC | + |
Preference number: 5 (lower is better) Translates to: CKIHCTFFYTGHISKWAARAMFS*TDSQMG Trigger: GCCCATCTGCGAATCGGTCAAAGAGAACATGGCCCG...CGCAGCCCATTTTGAAATGTGCCCTGTGTAGAAGAATGTACAGTGTATTTTACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065086.6 |
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CDS GCA 72 bp | GCGCCGGCGGGCCCCGGAGCATCAGCCCCGCCGCGCTaGGCTAGCACCGGCGCACAAGCCTCGGCGTACTGG | + |
Preference number: 6 (lower is better) Translates to: APAGPGASAPPR*ASTGAQASAYW Trigger: CCAGTACGCCGAGGCTTGTGCGCCGGTGCTAGCGCAGCGCGGCGGGGCTGATGCTCCGGGGCCCGCCGGCGC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CAA 90 bp | AGCGCCGCCGCCCGGGCGCGCAAGGCCGTCGTCGTCGTCCAGGGGTaGCTCGCCGCCCGCGGCCCCAGCGCGCTGCTCGTCGTCATATTC | + |
Preference number: 6 (lower is better) Translates to: SAAARARKAVVVVQG*LAARGPSALLVVIF Trigger: GAATATGACGACGAGCAGCGCGCTGGGGCCGCGGGCGGCGAGCAACCCCTGGACGACGACGACGGCCTTGCGCGCCCGGGCGGCGGCGCT 77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS TCA 72 bp | GCTCGCCCTGACACTGCAGCAGCGCCTGCCAGCAGATaGGGCGGCGGCCGTGCGCTAGCCCCGAGCCCCGCG | + |
Preference number: 6 (lower is better) Translates to: ARPDTAAAPASR*GGGRALAPSPA Trigger: CGCGGGGCTCGGGGCTAGCGCACGGCCGCCGCCTCATCTGCTGGCAGGCGCTGCTGCAGTGTCAGGGCGAGC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS GCA 72 bp | TGCAGCAGCGCCTGCCAGCAGATGAGGCGGCGGCCGTaGGCTAGCCCCGAGCCCCGCGGTGCCGAGCACAGC | + |
Preference number: 6 (lower is better) Translates to: CSSACQQMRRRP*ASPEPRGAEHS Trigger: GCTGTGCTCGGCACCGCGGGGCTCGGGGCTAGCGCACGGCCGCCGCCTCATCTGCTGGCAGGCGCTGCTGCA 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS GCA 72 bp | CCAGGCCCCCGTCCGAGCCGCTGCTGCCCGGACCGTTaGTCGCATCTGGGCCGAAGCACAGGCGGGCCATGT | + |
Preference number: 6 (lower is better) Translates to: PGPRPSRCCPDR*SHLGRSTGGPC Trigger: ACATGGCCCGCCTGTGCTTCGGCCCAGATGCGAGCAACGGTCCGGGCAGCAGCGGCTCGGACGGGGGCCTGG 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CAA 72 bp | TCCAGGCCCCCGTCCGAGCCGCTGCTGCCCGGACCGTaGCTCGCATCTGGGCCGAAGCACAGGCGGGCCATG | + |
Preference number: 6 (lower is better) Translates to: SRPPSEPLLPGP*LASGPKHRRAM Trigger: CATGGCCCGCCTGTGCTTCGGCCCAGATGCGAGCAACGGTCCGGGCAGCAGCGGCTCGGACGGGGGCCTGGA 74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CAA 90 bp | TGCGCGCAGTCGCAGTCCTCCAGCGCGGGCCCGCGGCGCGTGTGGTaGAGCTGGATAAGCGCCGAGATGCAGTGGCTCGGGCAGCGCCAG | + |
Preference number: 6 (lower is better) Translates to: CAQSQSSSAGPRRVW*SWISAEMQWLGQRQ Trigger: CTGGCGCTGCCCGAGCCACTGCATCTCGGCGCTTATCCAGCTCAACCACACGCGCCGCGGGCCCGCGCTGGAGGACTGCGACTGCGCGCA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS TCA 72 bp | GCAGCGCCGCCTTGGGCACGGCCAGCATGTCCTCGATaGCCGCGCGGCACTCGTCTGTGCAGCGCAGCCCGT | + |
Preference number: 6 (lower is better) Translates to: AAPPWARPACPR*PRGTRLCSAAR Trigger: ACGGGCTGCGCTGCACAGACGAGTGCCGCGCGGTCATCGAGGACATGCTGGCCGTGCCCAAGGCGGCGCTGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS GCA 72 bp | TCGATGGCGCGCTTGGTGGACCTGCAGTGTTCGTCCTaGGCGCAGTCGCAGTCCTCCAGCGCGGGCCCGCGG | + |
Preference number: 6 (lower is better) Translates to: SMARLVDLQCSS*AQSQSSSAGPR Trigger: CCGCGGGCCCGCGCTGGAGGACTGCGACTGCGCGCAGGACGAACACTGCAGGTCCACCAAGCGCGCCATCGA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CCA 72 bp | CGCGTGTGGTTGAGCTGGATAAGCGCCGAGATGCAGTaGCTCGGGCAGCGCCAGCGCGGCGAGGACGCGGCC | + |
Preference number: 6 (lower is better) Translates to: RVWLSWISAEMQ*LGQRQRGEDAA Trigger: GGCCGCGTCCTCGCCGCGCTGGCGCTGCCCGAGCCACTGCATCTCGGCGCTTATCCAGCTCAACCACACGCG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CCA 72 bp | TCCTCCAGCGCGGGCCCGCGGCGCGTGTGGTTGAGCTaGATAAGCGCCGAGATGCAGTGGCTCGGGCAGCGC | + |
Preference number: 6 (lower is better) Translates to: SSSAGPRRVWLS*ISAEMQWLGQR Trigger: GCGCTGCCCGAGCCACTGCATCTCGGCGCTTATCCAGCTCAACCACACGCGCCGCGGGCCCGCGCTGGAGGA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CAA 90 bp | GGGCCCACGCTGCTGGTGCGCGGCAGACAGGGCTCGATGGCGCGCTaGGTGGACCTGCAGTGTTCGTCCTGCGCGCAGTCGCAGTCCTCC | + |
Preference number: 6 (lower is better) Translates to: GPTLLVRGRQGSMAR*VDLQCSSCAQSQSS Trigger: GGAGGACTGCGACTGCGCGCAGGACGAACACTGCAGGTCCACCAAGCGCGCCATCGAGCCCTGTCTGCCGCGCACCAGCAGCGTGGGCCC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS GCA 72 bp | CGTCGTAGTAGTCGTCCAGGCCCCCGTCCGAGCCGCTaGTGCCCGGACCGTTGCTCGCATCTGGGCCGAAGC | + |
Preference number: 6 (lower is better) Translates to: RRSSRPGPRPSR*CPDRCSHLGRS Trigger: GCTTCGGCCCAGATGCGAGCAACGGTCCGGGCAGCAGCGGCTCGGACGGGGGCCTGGACGACTACTACGACG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS GCA 72 bp | TTCGATTCGCCCAGTGGCCTCCACTGCCGCTGCTGCTaGTCCTGCGCCCGGGACCGTGGGGCAAGTCTCCGC | + |
Preference number: 6 (lower is better) Translates to: FDSPSGLHCRCC*SCARDRGASLR Trigger: GCGGAGACTTGCCCCACGGTCCCGGGCGCAGGAGCAGCAGCAGCGGCAGTGGAGGCCACTGGGCGAATCGAA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS GCA 72 bp | CGCTTCGATTCGCCCAGTGGCCTCCACTGCCGCTGCTaGTGCTCCTGCGCCCGGGACCGTGGGGCAAGTCTC | + |
Preference number: 6 (lower is better) Translates to: RFDSPSGLHCRC*CSCARDRGASL Trigger: GAGACTTGCCCCACGGTCCCGGGCGCAGGAGCAGCAGCAGCGGCAGTGGAGGCCACTGGGCGAATCGAAGCG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS GCA 72 bp | AGGCGCTTCGATTCGCCCAGTGGCCTCCACTGCCGCTaGTGCTGCTCCTGCGCCCGGGACCGTGGGGCAAGT | + |
Preference number: 6 (lower is better) Translates to: RRFDSPSGLHCR*CCSCARDRGAS Trigger: ACTTGCCCCACGGTCCCGGGCGCAGGAGCAGCAGCAGCGGCAGTGGAGGCCACTGGGCGAATCGAAGCGCCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CCA 72 bp | GGCCCACGCTGCTGGTGCGCGGCAGACAGGGCTCGATaGCGCGCTTGGTGGACCTGCAGTGTTCGTCCTGCG | + |
Preference number: 6 (lower is better) Translates to: GPRCWCAADRAR*RAWWTCSVRPA Trigger: CGCAGGACGAACACTGCAGGTCCACCAAGCGCGCCATCGAGCCCTGTCTGCCGCGCACCAGCAGCGTGGGCC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CAA 72 bp | TCGCAGTCCTCCAGCGCGGGCCCGCGGCGCGTGTGGTaGAGCTGGATAAGCGCCGAGATGCAGTGGCTCGGG | + |
Preference number: 6 (lower is better) Translates to: SQSSSAGPRRVW*SWISAEMQWLG Trigger: CCCGAGCCACTGCATCTCGGCGCTTATCCAGCTCAACCACACGCGCCGCGGGCCCGCGCTGGAGGACTGCGA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS GCA 72 bp | CGTAGTAGTCGTCCAGGCCCCCGTCCGAGCCGCTGCTaGCCGGACCGTTGCTCGCATCTGGGCCGAAGCACA | + |
Preference number: 6 (lower is better) Translates to: RSSRPGPRPSRC*PDRCSHLGRST Trigger: TGTGCTTCGGCCCAGATGCGAGCAACGGTCCGGGCAGCAGCGGCTCGGACGGGGGCCTGGACGACTACTACG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CCA 72 bp | CAGTCGCAGTCCTCCAGCGCGGGCCCGCGGCGCGTGTaGTTGAGCTGGATAAGCGCCGAGATGCAGTGGCTC | + |
Preference number: 6 (lower is better) Translates to: QSQSSSAGPRRV*LSWISAEMQWL Trigger: GAGCCACTGCATCTCGGCGCTTATCCAGCTCAACCACACGCGCCGCGGGCCCGCGCTGGAGGACTGCGACTG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CCA 72 bp | TGCTGGTGCGCGGCAGACAGGGCTCGATGGCGCGCTTaGTGGACCTGCAGTGTTCGTCCTGCGCGCAGTCGC | + |
Preference number: 6 (lower is better) Translates to: CWCAADRARWRA*WTCSVRPARSR Trigger: GCGACTGCGCGCAGGACGAACACTGCAGGTCCACCAAGCGCGCCATCGAGCCCTGTCTGCCGCGCACCAGCA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CCA 72 bp | GCGGAGACGAGGCTCGGGTGGCGGCCGCGGGGCCGCTaGAAAAGTTTGTCCGAGTTCCGCGCACTTCTGGCA | + |
Preference number: 6 (lower is better) Translates to: AETRLGWRPRGR*KSLSEFRALLA Trigger: TGCCAGAAGTGCGCGGAACTCGGACAAACTTTTCCAGCGGCCCCGCGGCCGCCACCCGAGCCTCGTCTCCGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223933.2 |
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CDS CAA 72 bp | CTGCTGGTGCGCGGCAGACAGGGCTCGATGGCGCGCTaGGTGGACCTGCAGTGTTCGTCCTGCGCGCAGTCG | + |
Preference number: 6 (lower is better) Translates to: LLVRGRQGSMAR*VDLQCSSCAQS Trigger: CGACTGCGCGCAGGACGAACACTGCAGGTCCACCAAGCGCGCCATCGAGCCCTGTCTGCCGCGCACCAGCAG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CAA 72 bp | CAGATGGGCCGCTCCAGCCCATCGCACACGCAGTCGTaGAGCAGCGCCGCCTTGGGCACGGCCAGCATGTCC | + |
Preference number: 6 (lower is better) Translates to: QMGRSSPSHTQS*SSAALGTASMS Trigger: GGACATGCTGGCCGTGCCCAAGGCGGCGCTGCTCAACGACTGCGTGTGCGATGGGCTGGAGCGGCCCATCTG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CAA 72 bp | AGGCTCGGGTGGCGGCCGCGGGGCCGCTGGAAAAGTTaGTCCGAGTTCCGCGCACTTCTGGCATGGGCGTCC | + |
Preference number: 6 (lower is better) Translates to: RLGWRPRGRWKS*SEFRALLAWAS Trigger: GGACGCCCATGCCAGAAGTGCGCGGAACTCGGACAAACTTTTCCAGCGGCCCCGCGGCCGCCACCCGAGCCT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000223933.2 |
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CDS TCA 72 bp | AGATGGGCCGCTCCAGCCCATCGCACACGCAGTCGTTaGGCAGCGCCGCCTTGGGCACGGCCAGCATGTCCT | + |
Preference number: 6 (lower is better) Translates to: RWAAPAHRTRSR*AAPPWARPACP Trigger: AGGACATGCTGGCCGTGCCCAAGGCGGCGCTGCTCAACGACTGCGTGTGCGATGGGCTGGAGCGGCCCATCT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS GCA 72 bp | GCGCACAAGCCTCGGCGTACTGGCTGTAGGCGTAGCTaGAGTCGGGCTCGCCCTGACACTGCAGCAGCGCCT | + |
Preference number: 6 (lower is better) Translates to: AHKPRRTGCRRS*SRARPDTAAAP Trigger: AGGCGCTGCTGCAGTGTCAGGGCGAGCCCGACTGCAGCTACGCCTACAGCCAGTACGCCGAGGCTTGTGCGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS GCA 72 bp | GCGGCAGACAGGGCTCGATGGCGCGCTTGGTGGACCTaGAGTGTTCGTCCTGCGCGCAGTCGCAGTCCTCCA | + |
Preference number: 6 (lower is better) Translates to: AADRARWRAWWT*SVRPARSRSPP Trigger: TGGAGGACTGCGACTGCGCGCAGGACGAACACTGCAGGTCCACCAAGCGCGCCATCGAGCCCTGTCTGCCGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CCA 72 bp | TGGTGCGCGGCAGACAGGGCTCGATGGCGCGCTTGGTaGACCTGCAGTGTTCGTCCTGCGCGCAGTCGCAGT | + |
Preference number: 6 (lower is better) Translates to: WCAADRARWRAW*TCSVRPARSRS Trigger: ACTGCGACTGCGCGCAGGACGAACACTGCAGGTCCACCAAGCGCGCCATCGAGCCCTGTCTGCCGCGCACCA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CAA 90 bp | ACCGATTCGCAGATGGGCCGCTCCAGCCCATCGCACACGCAGTCGTaGAGCAGCGCCGCCTTGGGCACGGCCAGCATGTCCTCGATGACC | + |
Preference number: 6 (lower is better) Translates to: TDSQMGRSSPSHTQS*SSAALGTASMSSMT Trigger: GGTCATCGAGGACATGCTGGCCGTGCCCAAGGCGGCGCTGCTCAACGACTGCGTGTGCGATGGGCTGGAGCGGCCCATCTGCGAATCGGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CCA 72 bp | GTCCGAGCCGCTGCTGCCCGGACCGTTGCTCGCATCTaGGCCGAAGCACAGGCGGGCCATGTTCTCTTTGAC | + |
Preference number: 6 (lower is better) Translates to: VRAAAARTVARI*AEAQAGHVLFD Trigger: GTCAAAGAGAACATGGCCCGCCTGTGCTTCGGCCCAGATGCGAGCAACGGTCCGGGCAGCAGCGGCTCGGAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CAA 90 bp | CCGTTGCTCGCATCTGGGCCGAAGCACAGGCGGGCCATGTTCTCTTaGACCGATTCGCAGATGGGCCGCTCCAGCCCATCGCACACGCAG | + |
Preference number: 6 (lower is better) Translates to: PLLASGPKHRRAMFS*TDSQMGRSSPSHTQ Trigger: CTGCGTGTGCGATGGGCTGGAGCGGCCCATCTGCGAATCGGTCAAAGAGAACATGGCCCGCCTGTGCTTCGGCCCAGATGCGAGCAACGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS TCA 72 bp | CATCTGGGCCGAAGCACAGGCGGGCCATGTTCTCTTTaGCCGATTCGCAGATGGGCCGCTCCAGCCCATCGC | + |
Preference number: 6 (lower is better) Translates to: HLGRSTGGPCSL*PIRRWAAPAHR Trigger: GCGATGGGCTGGAGCGGCCCATCTGCGAATCGGTCAAAGAGAACATGGCCCGCCTGTGCTTCGGCCCAGATG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |
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CDS CAA 72 bp | GCATCTGGGCCGAAGCACAGGCGGGCCATGTTCTCTTaGACCGATTCGCAGATGGGCCGCTCCAGCCCATCG | + |
Preference number: 6 (lower is better) Translates to: ASGPKHRRAMFS*TDSQMGRSSPS Trigger: CGATGGGCTGGAGCGGCCCATCTGCGAATCGGTCAAAGAGAACATGGCCCGCCTGTGCTTCGGCCCAGATGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000065086.6 ENSMUST00000223933.2 |