RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GARRE1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000066571

Ensembl transcript IDs: ENSMUST00000085592.6, ENSMUST00000108074.8, ENSMUST00000205264.2, ENSMUST00000206399.2

Found 637 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CGCATACATGCGCTTTGGCAAGACACCTCTGCCAAGCGCAGCACCTaGAATCACCAGTGTTTAGAGCAAGGTGGTGCTTCGAACAGCACC +
Preference number: 1 (lower is better)
Translates to: RIHALWQDTSAKRST*NHQCLEQGGASNST
Trigger: GGTGCTGTTCGAAGCACCACCTTGCTCTAAACACTGGTGATTCCAGGTGCTGCGCTTGGCAGAGGTGTCTTGCCAAAGCGCATGTATGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR TCA 90 bp CTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTaGGGCCTCAGGCAGCCTGGAGACACAGTACTAAAAACGCAGGTG +
Preference number: 1 (lower is better)
Translates to: LQAEMSPPHSTNDNS*GLRQPGDTVLKTQV
Trigger: CACCTGCGTTTTTAGTACTGTGTCTCCAGGCTGCCTGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR TCA 90 bp AGTGTCACCTGTGCTGTGGCACCGAGGAGTGACCTTGGCCCAAGGTaGGGTCTTCAGGGAGGCACTATGAAAATGAGAGTACTGCAGAAG +
Preference number: 1 (lower is better)
Translates to: SVTCAVAPRSDLGPR*GLQGGTMKMRVLQK
Trigger: CTTCTGCAGTACTCTCATTTTCATAGTGCCTCCCTGAAGACCTCACCTTGGGCCAAGGTCACTCCTCGGTGCCACAGCACAGGTGACACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR GCA 90 bp TGGTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATaGAGGACTACCTTCAGACTGTGTTTTCCCAAGTGTGGCCTCTGG +
Preference number: 1 (lower is better)
Translates to: WSVLFSACRPHAFPT*RTTFRLCFPKCGLW
Trigger: CCAGAGGCCACACTTGGGAAAACACAGTCTGAAGGTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGACCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR CCA 90 bp CTTGGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTaGGACAGGGTGTACTGGTCCTTCTGGGGGCTAGTATCAGCTAGT +
Preference number: 1 (lower is better)
Translates to: LGAANHLRPKEYFCP*DRVYWSFWGLVSAS
Trigger: ACTAGCTGATACTAGCCCCCAGAAGGACCAGTACACCCTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCCAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR CCA 90 bp ACATGCAGGACTACCTTCAGACTGTGTTTTCCCAAGTGTGGCCTCTaGCCACCTGCACCAGGATTACCTGAGGTGCTTATTAAGCATGCA +
Preference number: 1 (lower is better)
Translates to: TCRTTFRLCFPKCGL*PPAPGLPEVLIKHA
Trigger: TGCATGCTTAATAAGCACCTCAGGTAATCCTGGTGCAGGTGGCCAGAGGCCACACTTGGGAAAACACAGTCTGAAGGTAGTCCTGCATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR TCA 90 bp GCTTCAGAGGAGCTACTGACCCATGGGAAGCCAGGTGGTTGCTTCTaGTCACTAGCATCTTATATAAGCTTAAATGAAGACAGTGCTGAG +
Preference number: 1 (lower is better)
Translates to: ASEELLTHGKPGGCF*SLASYISLNEDSAE
Trigger: CTCAGCACTGTCTTCATTTAAGCTTATATAAGATGCTAGTGATCAGAAGCAACCACCTGGCTTCCCATGGGTCAGTAGCTCCTCTGAAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR GCA 90 bp TGCTACCTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTaGCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAG +
Preference number: 1 (lower is better)
Translates to: CYLQSLRNQALKTWS*QSPQTQGIFLSLGQ
Trigger: CTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR GCA 90 bp GTTAAAGAGAAGAGTTTCAAAGAATGGTCAGTTTTGTTCTCAGCCTaGAGGCCTCATGCCTTTCCCACATGCAGGACTACCTTCAGACTG +
Preference number: 1 (lower is better)
Translates to: VKEKSFKEWSVLFSA*RPHAFPTCRTTFRL
Trigger: CAGTCTGAAGGTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGACCATTCTTTGAAACTCTTCTCTTTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR GCA 90 bp ACAGCTAACACAGACAACAGCCACGCAGGGCTGGTGCAAAGTACGTaGCTGGAAAACTCTATGTACAAAATAGTTCTCTGTAAACATGGT +
Preference number: 1 (lower is better)
Translates to: TANTDNSHAGLVQST*LENSMYKIVLCKHG
Trigger: ACCATGTTTACAGAGAACTATTTTGTACATAGAGTTTTCCAGGCACGTACTTTGCACCAGCCCTGCGTGGCTGTTGTCTGTGTTAGCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR TCA 90 bp CTGCAGAAGACTAGAACTGGAAACACAGCACTGTGGACACATTACTaGAGGAAATACACAGTTTTTACAAGTCAAACAGCCACAAGGAAC +
Preference number: 1 (lower is better)
Translates to: LQKTRTGNTALWTHY*RKYTVFTSQTATRN
Trigger: GTTCCTTGTGGCTGTTTGACTTGTAAAAACTGTGTATTTCCTTCAGTAATGTGTCCACAGTGCTGTGTTTCCAGTTCTAGTCTTCTGCAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR CCA 90 bp TTATTTCTCAATTTAAGCACCATTCAATTCTGGATCCATTCTAGCTaGAAAATATCCCCAAATCCATGGAGTGTCATCTGTTTAATGGCA +
Preference number: 1 (lower is better)
Translates to: LFLNLSTIQFWIHSS*KISPNPWSVICLMA
Trigger: TGCCATTAAACAGATGACACTCCATGGATTTGGGGATATTTTCCAGCTAGAATGGATCCAGAATTGAATGGTGCTTAAATTGAGAAATAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR GCA 90 bp AGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGGGCAGCAGGTTCAGCATGCACCAGCTaGACCCCCTGGGAGGCCAGA +
Preference number: 2 (lower is better)
Translates to: SVVLVLPWSWWKEVRAAGSACTS*TPWEAR
Trigger: TCTGGCCTCCCAGGGGGTGCAGCTGGTGCATGCTGA...ACCTGCTGCCCTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR CCA 90 bp CTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCACCAGCTGCACCCCCTaGGAGGCCAGAATATGCCTG +
Preference number: 2 (lower is better)
Translates to: LPSTVPSVEERGAGAALVTSCTP*EARICL
Trigger: CAGGCATATTCTGGCCTCCCAGGGGGTGCAGCTGGT...GACCAGGGCAGCACCAGCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR CCA 90 bp CTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCATGAGCCTGCACCCCTaGGTGCTTCAGAGGAGCTAC +
Preference number: 2 (lower is better)
Translates to: LPSTVPSVEERGAGAALVMSLHP*VLQRSY
Trigger: GTAGCTCCTCTGAAGCACCCAGGGGTGCAGGCTCAT...GACCAGGGCAGCACCAGCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR CCA 90 bp AGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGGGCAGCAGGTACCAGCTGCACCCCCTaGGAGGCCAGAATATGCCTG +
Preference number: 2 (lower is better)
Translates to: SVVLVLPWSWWKEVRAAGTSCTP*EARICL
Trigger: CAGGCATATTCTGGCCTCCCAGGGGGTGCAGCTGGT...ACCTGCTGCCCTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR TCA 90 bp TCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGCTTCAGAGGAGCTACTaGCCCATGGGAAGCCAGGTG +
Preference number: 2 (lower is better)
Translates to: SVEERGAGAALVMVEGSELQRSY*PMGSQV
Trigger: CACCTGGCTTCCCATGGGTCAGTAGCTCCTCTGAAG...CTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCTCCTCTACGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR GCA 90 bp TCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGAGCCTGCAGGCCTCATaGCTTTCCCACATGCAGGAC +
Preference number: 2 (lower is better)
Translates to: SVEERGAGAALVMVEGSESLQAS*LSHMQD
Trigger: GTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCT...CTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCTCCTCTACGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR CCA 90 bp TCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGCCCAAGTGTGGCCTCTaGCCACCTGCACCAGGATTA +
Preference number: 2 (lower is better)
Translates to: SVEERGAGAALVMVEGSEPKCGL*PPAPGL
Trigger: TAATCCTGGTGCAGGTGGCCAGAGGCCACACTTGGG...CTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCTCCTCTACGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR CCA 90 bp GGTCTTGGTGCAACCCCTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCGGAGCTACTGACCCATaGGAAGCCAGGTGGTTGCTT +
Preference number: 2 (lower is better)
Translates to: GLGATPPLHSSFRRGAWCGATDP*EARWLL
Trigger: AAGCAACCACCTGGCTTCCCATGGGTCAGTAGCTCC...GCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAGGGGTTGCACCAAGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR GCA 90 bp GGTCTTGGTGCAACCCCTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGGAGGCCAGAATATaGCTGACAGCAGTTGCCCAA +
Preference number: 2 (lower is better)
Translates to: GLGATPPLHSSFRRGAWCWEARI*LTAVAQ
Trigger: TTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCA...GCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAGGGGTTGCACCAAGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR CCA 90 bp TGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCTGGAGCTACTGACCCATaGGAAGCCAGGTGGTTGCTT +
Preference number: 2 (lower is better)
Translates to: CTPWEARICLTAVAQSRSGATDP*EARWLL
Trigger: AAGCAACCACCTGGCTTCCCATGGGTCAGTAGCTCC...AGAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR TCA 90 bp AGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAGGCCTTCAGAGGAGCTACTaGCCCATGGGAAGCCAGGTG +
Preference number: 2 (lower is better)
Translates to: RQKCHPHTARMTTAEASGLQRSY*PMGSQV
Trigger: CACCTGGCTTCCCATGGGTCAGTAGCTCCTCTGAAG...GCCTGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR CCA 90 bp TGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCTATCTCCATCTTCAGCTaGCTCTCAGGGGTCTGCTAC +
Preference number: 2 (lower is better)
Translates to: CTPWEARICLTAVAQSRSISIFS*LSGVCY
Trigger: GTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGAT...AGAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR CCA 90 bp TGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCTCCATGGGAAGCCAGGTaGTTGCTTCTGATCACTAGC +
Preference number: 2 (lower is better)
Translates to: CTPWEARICLTAVAQSRSPWEAR*LLLITS
Trigger: GCTAGTGATCAGAAGCAACCACCTGGCTTCCCATGG...AGAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR CCA 90 bp AGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAGGCATGAGCCTGCACCCCTaGGTGCTTCAGAGGAGCTAC +
Preference number: 2 (lower is better)
Translates to: RQKCHPHTARMTTAEASGMSLHP*VLQRSY
Trigger: GTAGCTCCTCTGAAGCACCCAGGGGTGCAGGCTCAT...GCCTGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR GCA 90 bp TACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCACGTAGAGGAGCGTGGTaGTGGTGCTGCCCTGGTCAT +
Preference number: 2 (lower is better)
Translates to: YRQKCHPHTARMTTAEASRRGAW*WCCPGH
Trigger: ATGACCAGGGCAGCACCAGCACCACGCTCCTCTACG...TGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR CCA 90 bp AGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAGGCTGGGACAGGGTGTACTaGTCCTTCTGGGGGCTAGTA +
Preference number: 2 (lower is better)
Translates to: RQKCHPHTARMTTAEASGWDRVY*SFWGLV
Trigger: TACTAGCCCCCAGAAGGACCAGTACACCCTGTCCCA...GCCTGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR CCA 90 bp AGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAGGCCCATGGGAAGCCAGGTaGTTGCTTCTGATCACTAGC +
Preference number: 2 (lower is better)
Translates to: RQKCHPHTARMTTAEASGPWEAR*LLLITS
Trigger: GCTAGTGATCAGAAGCAACCACCTGGCTTCCCATGG...GCCTGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR TCA 90 bp CCAGTTTTGGAAGGTCACAACTATTCACATGATGTCCTGCTAATGCCGAGCAAGTGTGGCACCGAGGAGTaGCCTTGGCCCAAGGTGAGG +
Preference number: 2 (lower is better)
Translates to: PVLEGHNYSHDVLLMPSKCGTEE*PWPKVR
Trigger: CCTCACCTTGGGCCAAGGTCACTCCTCGGTGCCACA...CTTGCTCGGCATTAGCAGGACATCATGTGAATAGTTGTGACCTTCCAAAACTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR GCA 90 bp GGTCTTGGTGCAACCCCTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCCAGGATTACCTGAGGTaGTTATTAAGCATGCAGATT +
Preference number: 2 (lower is better)
Translates to: GLGATPPLHSSFRRGAWCQDYLR*LLSMQI
Trigger: AATCTGCATGCTTAATAAGCACCTCAGGTAATCCTG...GCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAGGGGTTGCACCAAGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR GCA 90 bp GGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGGGAGGCCAGAATATaGCTGACAGCAGTTGCCCAA +
Preference number: 2 (lower is better)
Translates to: GSSLQAEMSPPHSTNDNSWEARI*LTAVAQ
Trigger: TTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCA...GCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR GCA 90 bp CCAGTTTTGGAAGGTCACAACTATTCACATGATGTCCTGCTAATGCCGAGCAAGCGTAGAGGAGCGTGGTaGTGGTGCTGCCCTGGTCAT +
Preference number: 2 (lower is better)
Translates to: PVLEGHNYSHDVLLMPSKRRGAW*WCCPGH
Trigger: ATGACCAGGGCAGCACCAGCACCACGCTCCTCTACG...CTTGCTCGGCATTAGCAGGACATCATGTGAATAGTTGTGACCTTCCAAAACTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR CCA 90 bp TATTCCGAACCCACTGAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACAAAAACGCAGGTGGCTaGGCTCACCCTACAGGTCCT +
Preference number: 2 (lower is better)
Translates to: YSEPTEKDLHYRQKCHPHKNAGG*AHPTGP
Trigger: AGGACCTGTAGGGTGAGCCCAGCCACCTGCGTTTTT...GTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTCAGTGGGTTCGGAATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR TCA 90 bp AGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAGGCCCAGGTGGTTGCTTCTaGTCACTAGCATCTTATATA +
Preference number: 2 (lower is better)
Translates to: RQKCHPHTARMTTAEASGPGGCF*SLASYI
Trigger: TATATAAGATGCTAGTGATCAGAAGCAACCACCTGG...GCCTGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR TCA 90 bp CCAGTTTTGGAAGGTCACAACTATTCACATGATGTCCTGCTAATGCCGAGCAAGCATGGTGGAAGGAAGTaGGGGCAGCAGGTGCACTCA +
Preference number: 2 (lower is better)
Translates to: PVLEGHNYSHDVLLMPSKHGGRK*GQQVHS
Trigger: TGAGTGCACCTGCTGCCCTCACTTCCTTCCACCATG...CTTGCTCGGCATTAGCAGGACATCATGTGAATAGTTGTGACCTTCCAAAACTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR CCA 90 bp GAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAATCTCCATCTTCAGCTaGCTCTCAGGGGTCTGCTAC +
Preference number: 2 (lower is better)
Translates to: EKDLHYRQKCHPHTARMTISIFS*LSGVCY
Trigger: GTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGAT...TGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR CCA 90 bp GGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCAGGCCTCAGGCAGCCTaGAGACACAGTACTAAAAAC +
Preference number: 2 (lower is better)
Translates to: GSSLQAEMSPPHSTNDNSRPQAA*RHSTKN
Trigger: GTTTTTAGTACTGTGTCTCCAGGCTGCCTGAGGCCT...GCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR CCA 90 bp GGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCCAGGCTTTAAAGACTTaGAGCTGCCAATCACCTCAG +
Preference number: 2 (lower is better)
Translates to: GSSLQAEMSPPHSTNDNSQALKT*SCQSPQ
Trigger: CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTG...GCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR CCA 90 bp TATTCCGAACCCACTGAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACAGGCCTCAGGCAGCCTaGAGACACAGTACTAAAAAC +
Preference number: 2 (lower is better)
Translates to: YSEPTEKDLHYRQKCHPHRPQAA*RHSTKN
Trigger: GTTTTTAGTACTGTGTCTCCAGGCTGCCTGAGGCCT...GTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTCAGTGGGTTCGGAATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR CAA 90 bp ATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTaGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAG +
Preference number: 2 (lower is better)
Translates to: ISIFSWLSGVCYLQS*RNQALKTWSCQSPQ
Trigger: CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR GCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGAGCCTTGGGGACAGTTaGCCCAACAGCTTTGATGGG +
Preference number: 2 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQSLGDS*PNSFDG
Trigger: CCCATCAAAGCTGTTGGGGCAACTGTCCCCAAGGCT...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR GCA 90 bp GTCTGCTACCTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAAAGCCTTGGGGACAGTTaGCCCAACAGCTTTGATGGG +
Preference number: 2 (lower is better)
Translates to: VCYLQSLRNQALKTWSCQSLGDS*PNSFDG
Trigger: CCCATCAAAGCTGTTGGGGCAACTGTCCCCAAGGCT...TTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR CCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGTGGGACAGGGTGTACTaGTCCTTCTGGGGGCTAGTA +
Preference number: 2 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQWDRVY*SFWGLV
Trigger: TACTAGCCCCCAGAAGGACCAGTACACCCTGTCCCA...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR CCA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGGTGCTGCCCTGGTCATaGTGGAAGGAAGTGAGGGCA +
Preference number: 2 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVVLPWS*WKEVRA
Trigger: TGCCCTCACTTCCTTCCACCATGACCAGGGCAGCAC...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR CCA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGGTGCTGGTGCTGCCCTaGTCATGGTGGAAGGAAGTG +
Preference number: 2 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVVLVLP*SWWKEV
Trigger: CACTTCCTTCCACCATGACCAGGGCAGCACCAGCAC...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR GCA 90 bp GGCACTATGAAAATGAGAGTACTGCAGAAGACTAGAACTGGAAACACAGCACTGGTTTTGTTCTCAGCCTaGAGGCCTCATGCCTTTCCC +
Preference number: 2 (lower is better)
Translates to: GTMKMRVLQKTRTGNTALVLFSA*RPHAFP
Trigger: GGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAAC...CAGTGCTGTGTTTCCAGTTCTAGTCTTCTGCAGTACTCTCATTTTCATAGTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR GCA 90 bp TATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTGTACAGCCTTGGGGACAGTTaGCCCAACAGCTTTGATGGG +
Preference number: 2 (lower is better)
Translates to: YISLNEDSAELTNLQPVYSLGDS*PNSFDG
Trigger: CCCATCAAAGCTGTTGGGGCAACTGTCCCCAAGGCT...GTACACTGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR GCA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGCATGCCTTTCCCACATaGAGGACTACCTTCAGACTG +
Preference number: 2 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVHAFPT*RTTFRL
Trigger: CAGTCTGAAGGTAGTCCTGCATGTGGGAAAGGCATG...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR CCA 90 bp GGCACTATGAAAATGAGAGTACTGCAGAAGACTAGAACTGGAAACACAGCACTGCAGGCTTTAAAGACTTaGAGCTGCCAATCACCTCAG +
Preference number: 2 (lower is better)
Translates to: GTMKMRVLQKTRTGNTALQALKT*SCQSPQ
Trigger: CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTG...CAGTGCTGTGTTTCCAGTTCTAGTCTTCTGCAGTACTCTCATTTTCATAGTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR CCA 90 bp TATTCCGAACCCACTGAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACTGGATCCATTCTAGCTaGAAAATATCCCCAAATCCA +
Preference number: 2 (lower is better)
Translates to: YSEPTEKDLHYRQKCHPHWIHSS*KISPNP
Trigger: TGGATTTGGGGATATTTTCCAGCTAGAATGGATCCA...GTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTCAGTGGGTTCGGAATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR TCA 90 bp GGCACTATGAAAATGAGAGTACTGCAGAAGACTAGAACTGGAAACACAGCACTGTTAGTGTGCACACTGTaGCAGCTAACACAGACAACA +
Preference number: 2 (lower is better)
Translates to: GTMKMRVLQKTRTGNTALLVCTL*QLTQTT
Trigger: TGTTGTCTGTGTTAGCTGTCACAGTGTGCACACTAA...CAGTGCTGTGTTTCCAGTTCTAGTCTTCTGCAGTACTCTCATTTTCATAGTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR CCA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGCAGGCTTTAAAGACTTaGAGCTGCCAATCACCTCAG +
Preference number: 2 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVQALKT*SCQSPQ
Trigger: CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTG...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR GCA 90 bp CCAGTTTTGGAAGGTCACAACTATTCACATGATGTCCTGCTAATGCCGAGCAAGCAGGATTACCTGAGGTaGTTATTAAGCATGCAGATT +
Preference number: 2 (lower is better)
Translates to: PVLEGHNYSHDVLLMPSKQDYLR*LLSMQI
Trigger: AATCTGCATGCTTAATAAGCACCTCAGGTAATCCTG...CTTGCTCGGCATTAGCAGGACATCATGTGAATAGTTGTGACCTTCCAAAACTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR TCA 90 bp GGCACTATGAAAATGAGAGTACTGCAGAAGACTAGAACTGGAAACACAGCACTGGTGAGGTGTTGTTGGTaGCTAAACAAAGATTTTGAA +
Preference number: 2 (lower is better)
Translates to: GTMKMRVLQKTRTGNTALVRCCW*LNKDFE
Trigger: TTCAAAATCTTTGTTTAGTCACCAACAACACCTCAC...CAGTGCTGTGTTTCCAGTTCTAGTCTTCTGCAGTACTCTCATTTTCATAGTGCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR GCA 72 bp GCCCTGGTCATGGTGGAAGGAAGTGAGGGCAGCAGGTaGACTCAGCATGCACCAGCTGCACCCCCTGGGAGG +
Preference number: 3 (lower is better)
Translates to: ALVMVEGSEGSR*TQHAPAAPPGR
Trigger: CCTCCCAGGGGGTGCAGCTGGTGCATGCTGAGTGCACCTGCTGCCCTCACTTCCTTCCACCATGACCAGGGC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR CCA 72 bp CAGCAGGTGCACTCAGCATGCACCAGCTGCACCCCCTaGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAA +
Preference number: 3 (lower is better)
Translates to: QQVHSACTSCTP*EARICLTAVAQ
Trigger: TTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCAGCTGGTGCATGCTGAGTGCACCTGCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR GCA 72 bp GCATGCACCAGCTGCACCCCCTGGGAGGCCAGAATATaGCTGACAGCAGTTGCCCAATCCCGCTCTTGTACA +
Preference number: 3 (lower is better)
Translates to: ACTSCTPWEARI*LTAVAQSRSCT
Trigger: TGTACAAGAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCAGCTGGTGCATGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR TCA 72 bp ATGAGCCTGCACCCCTGGGTGCTTCAGAGGAGCTACTaGCCCATGGGAAGCCAGGTGGTTGCTTCTGATCAC +
Preference number: 3 (lower is better)
Translates to: MSLHPWVLQRSY*PMGSQVVASDH
Trigger: GTGATCAGAAGCAACCACCTGGCTTCCCATGGGTCAGTAGCTCCTCTGAAGCACCCAGGGGTGCAGGCTCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR TCA 72 bp GCACCAGCTGCACCCCCTGGGAGGCCAGAATATGCCTaGCAGCAGTTGCCCAATCCCGCTCTTGTACATTAC +
Preference number: 3 (lower is better)
Translates to: APAAPPGRPEYA*QQLPNPALVHY
Trigger: GTAATGTACAAGAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCAGCTGGTGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR TCA 72 bp GCTAATGCCGAGCAAGGCAGCCATGCTTGGCCGTGCTaGGGACACACTCACACGCATACATGCGCTTTGGCA +
Preference number: 3 (lower is better)
Translates to: ANAEQGSHAWPC*GHTHTHTCALA
Trigger: TGCCAAAGCGCATGTATGCGTGTGAGTGTGTCCTCAGCACGGCCAAGCATGGCTGCCTTGCTCGGCATTAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR CAA 90 bp GTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATGCAGGACTACGTTGCCCCAACAGCTTaGATGGGCAGCAGGCTAGCT +
Preference number: 3 (lower is better)
Translates to: VSFVLSLQASCLSHMQDYVAPTA*MGSRLA
Trigger: AGCTAGCCTGCTGCCCATCAAAGCTGTTGGGGCAAC...GTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR CAA 90 bp TGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCCATCTTCAGCTGGCTCTGTTGCCCCAACAGCTTaGATGGGCAGCAGGCTAGCT +
Preference number: 3 (lower is better)
Translates to: CRLPASPECQKSPSSAGSVAPTA*MGSRLA
Trigger: AGCTAGCCTGCTGCCCATCAAAGCTGTTGGGGCAAC...AGAGCCAGCTGAAGATGGAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR CCA 72 bp GCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTaGGACAGGGTGTACTGGTCCTTCTGGGGGCTAGTA +
Preference number: 3 (lower is better)
Translates to: ANHLRPKEYFCP*DRVYWSFWGLV
Trigger: TACTAGCCCCCAGAAGGACCAGTACACCCTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR CCA 72 bp GCGCAGCACCTGGAATCACCAGTGTTTAGAGCAAGGTaGTGCTTCGAACAGCACCCATGTGGAGACTACACA +
Preference number: 3 (lower is better)
Translates to: AQHLESPVFRAR*CFEQHPCGDYT
Trigger: TGTGTAGTCTCCACATGGGTGCTGTTCGAAGCACCACCTTGCTCTAAACACTGGTGATTCCAGGTGCTGCGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR CAA 90 bp GTGTCAGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTGTTGCCCCAACAGCTTaGATGGGCAGCAGGCTAGCT +
Preference number: 3 (lower is better)
Translates to: VSEISIFSWLSGVCYLQSVAPTA*MGSRLA
Trigger: AGCTAGCCTGCTGCCCATCAAAGCTGTTGGGGCAAC...ACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCTGACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR TCA 72 bp GAAATGTCACCCCCACACAGCACGAATGACAACAGCTaGGGCCTCAGGCAGCCTGGAGACACAGTACTAAAA +
Preference number: 3 (lower is better)
Translates to: EMSPPHSTNDNS*GLRQPGDTVLK
Trigger: TTTTAGTACTGTGTCTCCAGGCTGCCTGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR GCA 72 bp CAGCACCTGGAATCACCAGTGTTTAGAGCAAGGTGGTaGTTCGAACAGCACCCATGTGGAGACTACACAAGC +
Preference number: 3 (lower is better)
Translates to: QHLESPVFRARW*FEQHPCGDYTS
Trigger: GCTTGTGTAGTCTCCACATGGGTGCTGTTCGAAGCACCACCTTGCTCTAAACACTGGTGATTCCAGGTGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR GCA 72 bp ACTCACACGCATACATGCGCTTTGGCAAGACACCTCTaGCAAGCGCAGCACCTGGAATCACCAGTGTTTAGA +
Preference number: 3 (lower is better)
Translates to: THTHTCALARHL*QAQHLESPVFR
Trigger: TCTAAACACTGGTGATTCCAGGTGCTGCGCTTGGCAGAGGTGTCTTGCCAAAGCGCATGTATGCGTGTGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR GCA 72 bp TTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATaGAGGACTACCTTCAGACTGTGTTTTCCCAAGTGT +
Preference number: 3 (lower is better)
Translates to: LFSACRPHAFPT*RTTFRLCFPKC
Trigger: ACACTTGGGAAAACACAGTCTGAAGGTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR CCA 72 bp ACTACCTTCAGACTGTGTTTTCCCAAGTGTGGCCTCTaGCCACCTGCACCAGGATTACCTGAGGTGCTTATT +
Preference number: 3 (lower is better)
Translates to: TTFRLCFPKCGL*PPAPGLPEVLI
Trigger: AATAAGCACCTCAGGTAATCCTGGTGCAGGTGGCCAGAGGCCACACTTGGGAAAACACAGTCTGAAGGTAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR CAA 90 bp TATTCCGAACCCACTGAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACCCAGGCTTTAAAGACTaGGAGCTGCCAATCACCTCA +
Preference number: 3 (lower is better)
Translates to: YSEPTEKDLHYRQKCHPHPGFKD*ELPITS
Trigger: TGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGG...GTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTCAGTGGGTTCGGAATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR CAA 90 bp TATTCCGAACCCACTGAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACAAAGAATGGTCAGTTTaGTTCTCAGCCTGCAGGCCT +
Preference number: 3 (lower is better)
Translates to: YSEPTEKDLHYRQKCHPHKEWSV*FSACRP
Trigger: AGGCCTGCAGGCTGAGAACAAAACTGACCATTCTTT...GTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTCAGTGGGTTCGGAATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR CAA 90 bp TGCTTGGCCGTGCTGAGGACACACTCACACGCATACATGCGCTTTGGCAAGACATACATCATAATTCCTTaGTCTCTGAGTCAGCTCACA +
Preference number: 3 (lower is better)
Translates to: CLAVLRTHSHAYMRFGKTYIIIP*SLSQLT
Trigger: TGTGAGCTGACTCAGAGACAAAGGAATTATGATGTA...TGTCTTGCCAAAGCGCATGTATGCGTGTGAGTGTGTCCTCAGCACGGCCAAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR TCA 72 bp AGGTGCTTATTAAGCATGCAGATTGCCAGCATCCCCTaGGTGTCAGAAATCTCCATCTTCAGCTGGCTCTCA +
Preference number: 3 (lower is better)
Translates to: RCLLSMQIASIP*VSEISIFSWLS
Trigger: TGAGAGCCAGCTGAAGATGGAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCATGCTTAATAAGCACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR CAA 90 bp TACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCATGCTACCTTCAAAGTTaGAGAAACCAGGCTTTAAAG +
Preference number: 3 (lower is better)
Translates to: YRQKCHPHTARMTTAEASCYLQS*RNQALK
Trigger: CTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCA...TGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR GCA 72 bp ACAGACAACAGCCACGCAGGGCTGGTGCAAAGTACGTaGCTGGAAAACTCTATGTACAAAATAGTTCTCTGT +
Preference number: 3 (lower is better)
Translates to: TDNSHAGLVQST*LENSMYKIVLC
Trigger: ACAGAGAACTATTTTGTACATAGAGTTTTCCAGGCACGTACTTTGCACCAGCCCTGCGTGGCTGTTGTCTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
3UTR-3UTR CAA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGCCAGGCTTTAAAGACTaGGAGCTGCCAATCACCTCA +
Preference number: 3 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVPGFKD*ELPITS
Trigger: TGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGG...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR GCA 72 bp TCAGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTaGTACCTTCAAAGTTTGAGAAACCAGGCTTTAAAG +
Preference number: 3 (lower is better)
Translates to: SEISIFSWLSGV*YLQSLRNQALK
Trigger: CTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR TCA 72 bp GAGCTACTGACCCATGGGAAGCCAGGTGGTTGCTTCTaGTCACTAGCATCTTATATAAGCTTAAATGAAGAC +
Preference number: 3 (lower is better)
Translates to: ELLTHGKPGGCF*SLASYISLNED
Trigger: GTCTTCATTTAAGCTTATATAAGATGCTAGTGATCAGAAGCAACCACCTGGCTTCCCATGGGTCAGTAGCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR GCA 72 bp CAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTaGCAATCACCTCAGACCCAAGGAATATTTCTGTCC +
Preference number: 3 (lower is better)
Translates to: QSLRNQALKTWS*QSPQTQGIFLS
Trigger: GGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR-3UTR CAA 90 bp TATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTGTACAAAGAATGGTCAGTTTaGTTCTCAGCCTGCAGGCCT +
Preference number: 3 (lower is better)
Translates to: YISLNEDSAELTNLQPVYKEWSV*FSACRP
Trigger: AGGCCTGCAGGCTGAGAACAAAACTGACCATTCTTT...GTACACTGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR CCA 72 bp AATTTAAGCACCATTCAATTCTGGATCCATTCTAGCTaGAAAATATCCCCAAATCCATGGAGTGTCATCTGT +
Preference number: 3 (lower is better)
Translates to: NLSTIQFWIHSS*KISPNPWSVIC
Trigger: ACAGATGACACTCCATGGATTTGGGGATATTTTCCAGCTAGAATGGATCCAGAATTGAATGGTGCTTAAATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCCTGCAGCGGTCAGACTaGCCAGCGGGGCAGAGGGGG +
Preference number: 4 (lower is better)
Translates to: LPSTVPSVEERGAGAALVLQRSD*PAGQRG
Trigger: CCCCCTCTGCCCCGCTGGGCAGTCTGACCGCTGCAG...GACCAGGGCAGCACCAGCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp CTGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCCCATGGGCGGCCAGTTaGCACGGGGGTTGCCTGGCC +
Preference number: 4 (lower is better)
Translates to: LHPLGGQNMPDSSCPIPLPWAAS*HGGCLA
Trigger: GGCCAGGCAACCCCCGTGGCAACTGGCCGCCCATGG...GAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp GGTCTTGGTGCAACCCCTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCGCCACGGGGGTTGCCTaGCCGGCGGCCATGTTGAGC +
Preference number: 4 (lower is better)
Translates to: GLGATPPLHSSFRRGAWCATGVA*PAAMLS
Trigger: GCTCAACATGGCCGCCGGCCAGGCAACCCCCGTGGC...GCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAGGGGTTGCACCAAGACC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp AGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGGGCAGCAGGTTGCCAGAGGCGTGTGTaGTCCAGCCTGGGGTGGCCG +
Preference number: 4 (lower is better)
Translates to: SVVLVLPWSWWKEVRAAGCQRRV*SSLGWP
Trigger: CGGCCACCCCAGGCTGGAGCACACACGCCTCTGGCA...ACCTGCTGCCCTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCTAGAGGGGGCGGTGGATaGCAGGGGAGCGCTCAGTGC +
Preference number: 4 (lower is better)
Translates to: CTPWEARICLTAVAQSRSRGGGG*QGSAQC
Trigger: GCACTGAGCGCTCCCCTGGCATCCACCGCCCCCTCT...AGAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp CTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCGGCGACTGCATAGAGTaGTGCAGCTGGGCTGGGCAG +
Preference number: 4 (lower is better)
Translates to: LPSTVPSVEERGAGAALVGDCIE*CSWAGQ
Trigger: CTGCCCAGCCCAGCTGCACCACTCTATGCAGTCGCC...GACCAGGGCAGCACCAGCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CTGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCATGGTGGCAGCTGCCTaGAGCGGTCAGACTGCCCAG +
Preference number: 4 (lower is better)
Translates to: LHPLGGQNMPDSSCPIPLMVAAA*SGQTAQ
Trigger: CTGGGCAGTCTGACCGCTGCAGGCAGCTGCCACCAT...GAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp CTGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCGTGGGGAGCTCACACTaGATGGGCTGTGGGGGTGTC +
Preference number: 4 (lower is better)
Translates to: LHPLGGQNMPDSSCPIPLVGSSH*MGCGGV
Trigger: GACACCCCCACAGCCCATGCAGTGTGAGCTCCCCAC...GAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCATCGGGGAAGGGTGCTaGCATGGTGCTTTGGGTGGC +
Preference number: 4 (lower is better)
Translates to: LPSTVPSVEERGAGAALVIGEGC*HGALGG
Trigger: GCCACCCAAAGCACCATGGCAGCACCCTTCCCCGAT...GACCAGGGCAGCACCAGCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCGGGGACTGCAGCATCTaGACGGTGTCGTTCCACTGG +
Preference number: 4 (lower is better)
Translates to: LPSTVPSVEERGAGAALVGDCSI*TVSFHW
Trigger: CCAGTGGAACGACACCGTGCAGATGCTGCAGTCCCC...GACCAGGGCAGCACCAGCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCTGAGTGGGGCATGGCATaGTGGCAGCTGCCTGCAGCG +
Preference number: 4 (lower is better)
Translates to: CTPWEARICLTAVAQSRSEWGMA*WQLPAA
Trigger: CGCTGCAGGCAGCTGCCACCATGCCATGCCCCACTC...AGAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp GGTCTTGGTGCAACCCCTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCACACTGCATGGGCTGTaGGGGTGTCTGCCTTCGCCC +
Preference number: 4 (lower is better)
Translates to: GLGATPPLHSSFRRGAWCTLHGL*GCLPSP
Trigger: GGGCGAAGGCAGACACCCCCACAGCCCATGCAGTGT...GCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAGGGGTTGCACCAAGACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp GGTCTTGGTGCAACCCCTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCGGAGCCAGACCTTGCTaGGCTGCCAGAGGCGTGTGT +
Preference number: 4 (lower is better)
Translates to: GLGATPPLHSSFRRGAWCGARPC*AARGVC
Trigger: ACACACGCCTCTGGCAGCCCAGCAAGGTCTGGCTCC...GCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAGGGGTTGCACCAAGACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp CTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCTTTGGAGACTGCTGCTaGGGAGCCAGACCTTGCTGG +
Preference number: 4 (lower is better)
Translates to: LPSTVPSVEERGAGAALVFGDCC*GARPCW
Trigger: CCAGCAAGGTCTGGCTCCTCAGCAGCAGTCTCCAAA...GACCAGGGCAGCACCAGCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCTCAGGCATCGGGTACTaGTGGTGCTGCTGCACCTTC +
Preference number: 4 (lower is better)
Translates to: LPSTVPSVEERGAGAALVSGIGY*WCCCTF
Trigger: GAAGGTGCAGCAGCACCAGCAGTACCCGATGCCTGA...GACCAGGGCAGCACCAGCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp AGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGGGCAGCAGGTGGCATCGGGGAAGGGTaGTGCCATGGTGCTTTGGGT +
Preference number: 4 (lower is better)
Translates to: SVVLVLPWSWWKEVRAAGGIGEG*CHGALG
Trigger: ACCCAAAGCACCATGGCAGCACCCTTCCCCGATGCC...ACCTGCTGCCCTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CTGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCGGGGACTGCAGCATCTaGACGGTGTCGTTCCACTGG +
Preference number: 4 (lower is better)
Translates to: LHPLGGQNMPDSSCPIPLGDCSI*TVSFHW
Trigger: CCAGTGGAACGACACCGTGCAGATGCTGCAGTCCCC...GAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp GGTCTTGGTGCAACCCCTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCACGCCTTGTCACCAGTaGGGACCCCTGATGGGACTG +
Preference number: 4 (lower is better)
Translates to: GLGATPPLHSSFRRGAWCTPCHQ*GPLMGL
Trigger: CAGTCCCATCAGGGGTCCCCACTGGTGACAAGGCGT...GCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAGGGGTTGCACCAAGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCTGGAGCCAGACCTTGCTaGGCTGCCAGAGGCGTGTGT +
Preference number: 4 (lower is better)
Translates to: CTPWEARICLTAVAQSRSGARPC*AARGVC
Trigger: ACACACGCCTCTGGCAGCCCAGCAAGGTCTGGCTCC...AGAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp CTGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCACAGACCCGCTGCCATaGGCTGTGATGGGTGCTGAG +
Preference number: 4 (lower is better)
Translates to: LHPLGGQNMPDSSCPIPLTDPLP*AVMGAE
Trigger: CTCAGCACCCATCACAGCCCATGGCAGCGGGTCTGT...GAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCTATAGAGTGGTGCAGCTaGGCTGGGCAGCGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: CTPWEARICLTAVAQSRSIEWCS*AGQRAG
Trigger: CCCAGCACGCTGCCCAGCCCAGCTGCACCACTCTAT...AGAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGGGCGACTGCATAGAGTaGTGCAGCTGGGCTGGGCAG +
Preference number: 4 (lower is better)
Translates to: SVEERGAGAALVMVEGSEGDCIE*CSWAGQ
Trigger: CTGCCCAGCCCAGCTGCACCACTCTATGCAGTCGCC...CTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCTCCTCTACGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp GGTCTTGGTGCAACCCCTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCACGGTGTCGTTCCACTaGCTGCCAGGACTGGCGACT +
Preference number: 4 (lower is better)
Translates to: GLGATPPLHSSFRRGAWCTVSFH*LPGLAT
Trigger: AGTCGCCAGTCCTGGCAGCCAGTGGAACGACACCGT...GCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAGGGGTTGCACCAAGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CTGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCGAGCTTCCGCCTCACTaGAGCAGCCCTGCAAACTTG +
Preference number: 4 (lower is better)
Translates to: LHPLGGQNMPDSSCPIPLELPPH*SSPANL
Trigger: CAAGTTTGCAGGGCTGCTGCAGTGAGGCGGAAGCTC...GAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CTGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCGGATCCAGGCTCCTCTaGAGCAGGGACATGGTAGCA +
Preference number: 4 (lower is better)
Translates to: LHPLGGQNMPDSSCPIPLGSRLL*SRDMVA
Trigger: TGCTACCATGTCCCTGCTGCAGAGGAGCCTGGATCC...GAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp AGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGGGCAGCAGGTGCTTGCCGCTTCTGCTaGATTGCCTGGCTCACTCCT +
Preference number: 4 (lower is better)
Translates to: SVVLVLPWSWWKEVRAAGACRFC*IAWLTP
Trigger: AGGAGTGAGCCAGGCAATGCAGCAGAAGCGGCAAGC...ACCTGCTGCCCTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGGGTGCTGGGCTGGGCAGCGTaGTGGGCATCGGGGAAGGGT +
Preference number: 4 (lower is better)
Translates to: GAANHLRPKEYFCPWDRVLGWAA*WASGKG
Trigger: ACCCTTCCCCGATGCCCAGCACGCTGCCCAGCCCAG...CACCCTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGGCCAGGACTGGCGACTaGATAGAGTGGTGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: SVEERGAGAALVMVEGSEARTGD*IEWCSW
Trigger: CCAGCTGCACCACTCTATGCAGTCGCCAGTCCTGGC...CTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCTCCTCTACGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CTGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCTGTCGTTCCACTGGCTaGCAGGACTGGCGACTGCAT +
Preference number: 4 (lower is better)
Translates to: LHPLGGQNMPDSSCPIPLCRSTG*QDWRLH
Trigger: ATGCAGTCGCCAGTCCTGGCAGCCAGTGGAACGACA...GAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GGTCTTGGTGCAACCCCTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCGAAGCCCTTGGGTGCTaGCTTATGTGCTGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: GLGATPPLHSSFRRGAWCEALGC*LMCWWR
Trigger: CCTCCACCAGCACATAAGGCAGCACCCAAGGGCTTC...GCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAGGGGTTGCACCAAGACC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp CTGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCACTGGCTGCCAGGACTaGCGACTGCATAGAGTGGTG +
Preference number: 4 (lower is better)
Translates to: LHPLGGQNMPDSSCPIPLTGCQD*RLHRVV
Trigger: CACCACTCTATGCAGTCGCCAGTCCTGGCAGCCAGT...GAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp AGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGGGCAGCAGGTTCAGCAAAGCAAGAGTaGGCCACCGGCTGGACTTTC +
Preference number: 4 (lower is better)
Translates to: SVVLVLPWSWWKEVRAAGSAKQE*ATGWTF
Trigger: GAAAGTCCAGCCGGTGGCTCACTCTTGCTTTGCTGA...ACCTGCTGCCCTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR TCA 90 bp TGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCTGATATGCCAGGCCACTaGCCAAGAGGAGACAGACCC +
Preference number: 4 (lower is better)
Translates to: CTPWEARICLTAVAQSRSDMPGH*PRGDRP
Trigger: GGGTCTGTCTCCTCTTGGTCAGTGGCCTGGCATATC...AGAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp GGTCTTGGTGCAACCCCTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCAGCTGTCCCCTTCTGTaGAGAACTCTGGCAAAGGCC +
Preference number: 4 (lower is better)
Translates to: GLGATPPLHSSFRRGAWCSCPLL*RTLAKA
Trigger: GGCCTTTGCCAGAGTTCTTCACAGAAGGGGACAGCT...GCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAGGGGTTGCACCAAGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp AGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAGGCATGGTGGCAGCTGCCTaGAGCGGTCAGACTGCCCAG +
Preference number: 4 (lower is better)
Translates to: RQKCHPHTARMTTAEASGMVAAA*SGQTAQ
Trigger: CTGGGCAGTCTGACCGCTGCAGGCAGCTGCCACCAT...GCCTGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp AGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAGGCTGGCATGGTGGCAGCTaGCTGCAGCGGTCAGACTGC +
Preference number: 4 (lower is better)
Translates to: RQKCHPHTARMTTAEASGWHGGS*LQRSDC
Trigger: GCAGTCTGACCGCTGCAGGCAGCTGCCACCATGCCA...GCCTGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp CTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCTTGGACTTCGATTCCTaGCAGGCATCCATCACAGCC +
Preference number: 4 (lower is better)
Translates to: LPSTVPSVEERGAGAALVLDFDS*QASITA
Trigger: GGCTGTGATGGATGCCTGGCAGGAATCGAAGTCCAA...GACCAGGGCAGCACCAGCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCTGGATCCAGGCTCCTCTaGAGCAGGGACATGGTAGCA +
Preference number: 4 (lower is better)
Translates to: CTPWEARICLTAVAQSRSGSRLL*SRDMVA
Trigger: TGCTACCATGTCCCTGCTGCAGAGGAGCCTGGATCC...AGAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CAAGGAATATTTCTGTCCCTGGGACAGGGTGTACTGGTCCTTCTGGGGGCTAGTTGCCAGAGGCGTGTGTaGTCCAGCCTGGGGTGGCCG +
Preference number: 4 (lower is better)
Translates to: QGIFLSLGQGVLVLLGASCQRRV*SSLGWP
Trigger: CGGCCACCCCAGGCTGGAGCACACACGCCTCTGGCA...ACTAGCCCCCAGAAGGACCAGTACACCCTGTCCCAGGGACAGAAATATTCCTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp CTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCTCTGCTGTGATCCAATaGGTTGCAGCAGGTGCTGGT +
Preference number: 4 (lower is better)
Translates to: LPSTVPSVEERGAGAALVSAVIQ*VAAGAG
Trigger: ACCAGCACCTGCTGCAACCCATTGGATCACAGCAGA...GACCAGGGCAGCACCAGCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp AGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGGGCAGCAGGTTCTCATCACTGGAACTaGCCGAGTCTCCCTGAGCTC +
Preference number: 4 (lower is better)
Translates to: SVVLVLPWSWWKEVRAAGSHHWN*PSLPEL
Trigger: GAGCTCAGGGAGACTCGGCCAGTTCCAGTGATGAGA...ACCTGCTGCCCTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAGGCTGGGCAGCGTGCTaGGCATCGGGGAAGGGTGCT +
Preference number: 4 (lower is better)
Translates to: YRQKCHPHTARMTTAEASGWAAC*ASGKGA
Trigger: AGCACCCTTCCCCGATGCCCAGCACGCTGCCCAGCC...TGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp AGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAGGCATAGAGTGGTGCAGCTaGGCTGGGCAGCGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: RQKCHPHTARMTTAEASGIEWCS*AGQRAG
Trigger: CCCAGCACGCTGCCCAGCCCAGCTGCACCACTCTAT...GCCTGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp GGTCTTGGTGCAACCCCTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGTATTGCAGTCATTaGCTGCAGCCCACACAGGGG +
Preference number: 4 (lower is better)
Translates to: GLGATPPLHSSFRRGAWCWYCSH*LQPTQG
Trigger: CCCCTGTGTGGGCTGCAGCCAATGACTGCAATACCA...GCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAGGGGTTGCACCAAGACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp TCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGAGCTGTCCCCTTCTGTaGAGAACTCTGGCAAAGGCC +
Preference number: 4 (lower is better)
Translates to: SVEERGAGAALVMVEGSESCPLL*RTLAKA
Trigger: GGCCTTTGCCAGAGTTCTTCACAGAAGGGGACAGCT...CTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCTCCTCTACGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp GGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGGGTGGGTCAGGAGAGGTGGTaGGGGCAGTGTGCTGGTCTC +
Preference number: 4 (lower is better)
Translates to: GAANHLRPKEYFCPWDRVGQERW*GQCAGL
Trigger: GAGACCAGCACACTGCCCTCACCACCTCTCCTGACC...CACCCTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGATCGGGTACTGCTGGTaGTGCTGCACCTTCTGCTTG +
Preference number: 4 (lower is better)
Translates to: SVEERGAGAALVMVEGSEIGYCW*CCTFCL
Trigger: CAAGCAGAAGGTGCAGCAGCACCAGCAGTACCCGAT...CTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCTCCTCTACGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp GTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATGCAGGACTACCAGGGGAGCGCTCAGTaGTCGGCCCAGCTCAGGCAT +
Preference number: 4 (lower is better)
Translates to: VSFVLSLQASCLSHMQDYQGSAQ*SAQLRH
Trigger: ATGCCTGAGCTGGGCCGAGCACTGAGCGCTCCCCTG...GTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp GTGTCAGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTCTGCAGCGGTCAGACTaGCCAGCGGGGCAGAGGGGG +
Preference number: 4 (lower is better)
Translates to: VSEISIFSWLSGVCYLQSLQRSD*PAGQRG
Trigger: CCCCCTCTGCCCCGCTGGGCAGTCTGACCGCTGCAG...ACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCTGACAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp CTGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCACCCCCTTCAGGAAGTaGGATCCTATCTGCACAGGA +
Preference number: 4 (lower is better)
Translates to: LHPLGGQNMPDSSCPIPLTPFRK*DPICTG
Trigger: TCCTGTGCAGATAGGATCGCACTTCCTGAAGGGGGT...GAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCTTGCCATCATCCCCATaGAGGAAGTTCTCACGTCTC +
Preference number: 4 (lower is better)
Translates to: LPSTVPSVEERGAGAALVLPSSP*RKFSRL
Trigger: GAGACGTGAGAACTTCCTGCATGGGGATGATGGCAA...GACCAGGGCAGCACCAGCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCTTACTGGACTTGGGGCTaGTGCTGCTTTGGAGACTGC +
Preference number: 4 (lower is better)
Translates to: CTPWEARICLTAVAQSRSYWTWG*CCFGDC
Trigger: GCAGTCTCCAAAGCAGCAGCAGCCCCAAGTCCAGTA...AGAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCTAGGGTGCTGCCATGGTaGTTTGGGTGGCCACGTTTT +
Preference number: 4 (lower is better)
Translates to: CTPWEARICLTAVAQSRSRVLPW*FGWPRF
Trigger: AAAACGTGGCCACCCAAAGCACCATGGCAGCACCCT...AGAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCCATCTTCAGCTGGCTCTCTGGGCTGGGCAGCGTaGTGGGCATCGGGGAAGGGT +
Preference number: 4 (lower is better)
Translates to: CRLPASPECQKSPSSAGSLGWAA*WASGKG
Trigger: ACCCTTCCCCGATGCCCAGCACGCTGCCCAGCCCAG...AGAGCCAGCTGAAGATGGAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGGGTGGGGTGCTGCCTTATGTaGTGGTGGAGGTGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: GAANHLRPKEYFCPWDRVGCCLM*WWRWGL
Trigger: CAGCCCCCACCTCCACCAGCACATAAGGCAGCACCC...CACCCTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCTCTTGAAGCCCTTGGGTaGTGCCTTATGTGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: CTPWEARICLTAVAQSRSLEALG*CLMCWW
Trigger: CCACCAGCACATAAGGCAGCACCCAAGGGCTTCAAG...AGAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TGCTTGGCCGTGCTGAGGACACACTCACACGCATACATGCGCTTTGGCAAGACAACACTGCATGGGCTGTaGGGGTGTCTGCCTTCGCCC +
Preference number: 4 (lower is better)
Translates to: CLAVLRTHSHAYMRFGKTTLHGL*GCLPSP
Trigger: GGGCGAAGGCAGACACCCCCACAGCCCATGCAGTGT...TGTCTTGCCAAAGCGCATGTATGCGTGTGAGTGTGTCCTCAGCACGGCCAAGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp GGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGGGTGGGAGCCAGACCTTGCTaGGCTGCCAGAGGCGTGTGT +
Preference number: 4 (lower is better)
Translates to: GAANHLRPKEYFCPWDRVGARPC*AARGVC
Trigger: ACACACGCCTCTGGCAGCCCAGCAAGGTCTGGCTCC...CACCCTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCCATCTTCAGCTGGCTCTGGCTGGGCAGCGTGCTaGGCATCGGGGAAGGGTGCT +
Preference number: 4 (lower is better)
Translates to: CRLPASPECQKSPSSAGSGWAAC*ASGKGA
Trigger: AGCACCCTTCCCCGATGCCCAGCACGCTGCCCAGCC...AGAGCCAGCTGAAGATGGAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGTGGTATTGCAGTCATTaGCTGCAGCCCACACAGGGG +
Preference number: 4 (lower is better)
Translates to: SVEERGAGAALVMVEGSEWYCSH*LQPTQG
Trigger: CCCCTGTGTGGGCTGCAGCCAATGACTGCAATACCA...CTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCTCCTCTACGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp GGTCTTGGTGCAACCCCTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCGAAGGCAGGTCAGCCTaGTTCCCAAAATCGCAGATA +
Preference number: 4 (lower is better)
Translates to: GLGATPPLHSSFRRGAWCEGRSA*FPKSQI
Trigger: TATCTGCGATTTTGGGAATCAGGCTGACCTGCCTTC...GCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAGGGGTTGCACCAAGACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp CTGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCATTCTGAGACGACTGTaGAGGGTCTGTAGTCCTAGG +
Preference number: 4 (lower is better)
Translates to: LHPLGGQNMPDSSCPIPLILRRL*RVCSPR
Trigger: CCTAGGACTACAGACCCTTCACAGTCGTCTCAGAAT...GAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp AGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGGGCAGCAGGTATTCTGAGACGACTGTaGAGGGTCTGTAGTCCTAGG +
Preference number: 4 (lower is better)
Translates to: SVVLVLPWSWWKEVRAAGILRRL*RVCSPR
Trigger: CCTAGGACTACAGACCCTTCACAGTCGTCTCAGAAT...ACCTGCTGCCCTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp CTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCGGATTACTGGAATTCTaGGACGACTGTGAAGGGTCT +
Preference number: 4 (lower is better)
Translates to: LPSTVPSVEERGAGAALVGLLEF*DDCEGS
Trigger: AGACCCTTCACAGTCGTCTCAGAATTCCAGTAATCC...GACCAGGGCAGCACCAGCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp GTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATGCAGGACTACAAAGGCCAGGTCCGATaGGCGTCTTCCATGGGCGGC +
Preference number: 4 (lower is better)
Translates to: VSFVLSLQASCLSHMQDYKGQVR*ASSMGG
Trigger: GCCGCCCATGGAAGACGCTCATCGGACCTGGCCTTT...GTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp GTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATGCAGGACTACGTCTCCCTGAGCTCCTaGCCAGCCGCTGTGCAAGCT +
Preference number: 4 (lower is better)
Translates to: VSFVLSLQASCLSHMQDYVSLSS*PAAVQA
Trigger: AGCTTGCACAGCGGCTGGTCAGGAGCTCAGGGAGAC...GTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp AGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAGGCTACTGCTGGTGCTGCTaGACCTTCTGCTTGGACCCG +
Preference number: 4 (lower is better)
Translates to: RQKCHPHTARMTTAEASGYCWCC*TFCLDP
Trigger: CGGGTCCAAGCAGAAGGTGCAGCAGCACCAGCAGTA...GCCTGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp GTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATGCAGGACTACGTGGGGAGCTCACACTaGATGGGCTGTGGGGGTGTC +
Preference number: 4 (lower is better)
Translates to: VSFVLSLQASCLSHMQDYVGSSH*MGCGGV
Trigger: GACACCCCCACAGCCCATGCAGTGTGAGCTCCCCAC...GTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp AGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGGGCAGCAGGTGCAGTCCCGAGGATTTaGTTCCATTTCCAGAAGGCA +
Preference number: 4 (lower is better)
Translates to: SVVLVLPWSWWKEVRAAGAVPRI*FHFQKA
Trigger: TGCCTTCTGGAAATGGAAGCAAATCCTCGGGACTGC...ACCTGCTGCCCTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TGCTTGGCCGTGCTGAGGACACACTCACACGCATACATGCGCTTTGGCAAGACACCGCTTCTGCTGCATTaGCTGGCTCACTCCTGCCAC +
Preference number: 4 (lower is better)
Translates to: CLAVLRTHSHAYMRFGKTPLLLH*LAHSCH
Trigger: GTGGCAGGAGTGAGCCAGGCAATGCAGCAGAAGCGG...TGTCTTGCCAAAGCGCATGTATGCGTGTGAGTGTGTCCTCAGCACGGCCAAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp GAGGTGCTTATTAAGCATGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCCCATGGGCGGCCAGTTaGCACGGGGGTTGCCTGGCC +
Preference number: 4 (lower is better)
Translates to: EVLIKHADCQHPLSVRNLPWAAS*HGGCLA
Trigger: GGCCAGGCAACCCCCGTGGCAACTGGCCGCCCATGG...GAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCATGCTTAATAAGCACCTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TGCTTGGCCGTGCTGAGGACACACTCACACGCATACATGCGCTTTGGCAAGACAGGCATCGGGGAAGGGTaGTGCCATGGTGCTTTGGGT +
Preference number: 4 (lower is better)
Translates to: CLAVLRTHSHAYMRFGKTGIGEG*CHGALG
Trigger: ACCCAAAGCACCATGGCAGCACCCTTCCCCGATGCC...TGTCTTGCCAAAGCGCATGTATGCGTGTGAGTGTGTCCTCAGCACGGCCAAGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp GTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATGCAGGACTACGGGTGCTGCCTTATGTaGTGGTGGAGGTGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: VSFVLSLQASCLSHMQDYGCCLM*WWRWGL
Trigger: CAGCCCCCACCTCCACCAGCACATAAGGCAGCACCC...GTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp AGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAGGCTCTGCACAGGAACCGTaGGGAGCTCACACTGCATGG +
Preference number: 4 (lower is better)
Translates to: RQKCHPHTARMTTAEASGSAQEP*GAHTAW
Trigger: CCATGCAGTGTGAGCTCCCCACGGTTCCTGTGCAGA...GCCTGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp TGCTTGGCCGTGCTGAGGACACACTCACACGCATACATGCGCTTTGGCAAGACAACAGACCCGCTGCCATaGGCTGTGATGGGTGCTGAG +
Preference number: 4 (lower is better)
Translates to: CLAVLRTHSHAYMRFGKTTDPLP*AVMGAE
Trigger: CTCAGCACCCATCACAGCCCATGGCAGCGGGTCTGT...TGTCTTGCCAAAGCGCATGTATGCGTGTGAGTGTGTCCTCAGCACGGCCAAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp CTGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCAAGACTCCATCACTTTaGTCACGGTTTGGCCAGGTG +
Preference number: 4 (lower is better)
Translates to: LHPLGGQNMPDSSCPIPLKTPSL*SRFGQV
Trigger: CACCTGGCCAAACCGTGACCAAAGTGATGGAGTCTT...GAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp GTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATGCAGGACTACGGCGACTGCATAGAGTaGTGCAGCTGGGCTGGGCAG +
Preference number: 4 (lower is better)
Translates to: VSFVLSLQASCLSHMQDYGDCIE*CSWAGQ
Trigger: CTGCCCAGCCCAGCTGCACCACTCTATGCAGTCGCC...GTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp ACTTGGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGCTTCGCCCTGTCTGCTaGGCTTCCGCCTCACTGCAG +
Preference number: 4 (lower is better)
Translates to: TWSCQSPQTQGIFLSLGQLRPVC*ASASLQ
Trigger: CTGCAGTGAGGCGGAAGCTCAGCAGACAGGGCGAAG...CTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCCAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp CTGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCCATGTGGATGGGACTTaGACCACAATTCTGGAACCT +
Preference number: 4 (lower is better)
Translates to: LHPLGGQNMPDSSCPIPLHVDGT*TTILEP
Trigger: AGGTTCCAGAATTGTGGTTCAAGTCCCATCCACATG...GAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp TCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGGCCAGAGTTGGTGCATaGCACTTTCTTTGTGAACCG +
Preference number: 4 (lower is better)
Translates to: SVEERGAGAALVMVEGSEARVGA*HFLCEP
Trigger: CGGTTCACAAAGAAAGTGTCATGCACCAACTCTGGC...CTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCTCCTCTACGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp GTGTCAGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTGCAGGCGCCCGAGGCTaGGGTGGAGTCTGCTGTGAT +
Preference number: 4 (lower is better)
Translates to: VSEISIFSWLSGVCYLQSAGARG*GGVCCD
Trigger: ATCACAGCAGACTCCACCTCAGCCTCGGGCGCCTGC...ACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCTGACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp ACTTGGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGAAAGGCCAGGTCCGATaGGCGTCTTCCATGGGCGGC +
Preference number: 4 (lower is better)
Translates to: TWSCQSPQTQGIFLSLGQKGQVR*ASSMGG
Trigger: GCCGCCCATGGAAGACGCTCATCGGACCTGGCCTTT...CTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCCAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp ACTTGGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGGTCTCCCTGAGCTCCTaGCCAGCCGCTGTGCAAGCT +
Preference number: 4 (lower is better)
Translates to: TWSCQSPQTQGIFLSLGQVSLSS*PAAVQA
Trigger: AGCTTGCACAGCGGCTGGTCAGGAGCTCAGGGAGAC...CTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCCAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGGGTGTACTGCTGGTGCTGCTaGACCTTCTGCTTGGACCCG +
Preference number: 4 (lower is better)
Translates to: GAANHLRPKEYFCPWDRVYCWCC*TFCLDP
Trigger: CGGGTCCAAGCAGAAGGTGCAGCAGCACCAGCAGTA...CACCCTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp GAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACACAGGGGAGCGCTCAGTaGTCGGCCCAGCTCAGGCAT +
Preference number: 4 (lower is better)
Translates to: EKDLHYRQKCHPHTARMTQGSAQ*SAQLRH
Trigger: ATGCCTGAGCTGGGCCGAGCACTGAGCGCTCCCCTG...TGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp CTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCAGCTCTTTTAGCTGGTaGTCAGGAATTGCTGCACTT +
Preference number: 4 (lower is better)
Translates to: LPSTVPSVEERGAGAALVSSFSW*SGIAAL
Trigger: AAGTGCAGCAATTCCTGAGCACCAGCTAAAAGAGCT...GACCAGGGCAGCACCAGCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCGTGGGGAGCTCACACTaGATGGGCTGTGGGGGTGTC +
Preference number: 4 (lower is better)
Translates to: GSSLQAEMSPPHSTNDNSVGSSH*MGCGGV
Trigger: GACACCCCCACAGCCCATGCAGTGTGAGCTCCCCAC...GCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp TCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGAATGGCAGTGATGGCTaGTGTGGTTGCATGGTTCCT +
Preference number: 4 (lower is better)
Translates to: SVEERGAGAALVMVEGSENGSDG*CGCMVP
Trigger: AGGAACCATGCAACCACAGCAGCCATCACTGCCATT...CTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCTCCTCTACGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAATCGGGGAAGGGTGCTaGCATGGTGCTTTGGGTGGC +
Preference number: 4 (lower is better)
Translates to: YRQKCHPHTARMTTAEASIGEGC*HGALGG
Trigger: GCCACCCAAAGCACCATGGCAGCACCCTTCCCCGAT...TGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp GAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACATGGGGCATGGCATGGTaGCAGCTGCCTGCAGCGGTC +
Preference number: 4 (lower is better)
Translates to: EKDLHYRQKCHPHTARMTWGMAW*QLPAAV
Trigger: GACCGCTGCAGGCAGCTGCCACCATGCCATGCCCCA...TGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp CTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCCTGAGGTCAATCTGCTaGCTGCTTCCATTACATGTT +
Preference number: 4 (lower is better)
Translates to: LPSTVPSVEERGAGAALVLRSIC*LLPLHV
Trigger: AACATGTAATGGAAGCAGCCAGCAGATTGACCTCAG...GACCAGGGCAGCACCAGCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp TGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCCATCTTCAGCTGGCTCTGGAGCTCACACTGCATaGGCTGTGGGGGTGTCTGCC +
Preference number: 4 (lower is better)
Translates to: CRLPASPECQKSPSSAGSGAHTA*AVGVSA
Trigger: GGCAGACACCCCCACAGCCCATGCAGTGTGAGCTCC...AGAGCCAGCTGAAGATGGAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp CTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCTATTGCCCATCATTTTaGCCCTTTCCTCTGAACACC +
Preference number: 4 (lower is better)
Translates to: LPSTVPSVEERGAGAALVYCPSF*PFPLNT
Trigger: GGTGTTCAGAGGAAAGGGCCAAAATGATGGGCAATA...GACCAGGGCAGCACCAGCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp CCAGTTTTGGAAGGTCACAACTATTCACATGATGTCCTGCTAATGCCGAGCAAGGCCACGGGGGTTGCCTaGCCGGCGGCCATGTTGAGC +
Preference number: 4 (lower is better)
Translates to: PVLEGHNYSHDVLLMPSKATGVA*PAAMLS
Trigger: GCTCAACATGGCCGCCGGCCAGGCAACCCCCGTGGC...CTTGCTCGGCATTAGCAGGACATCATGTGAATAGTTGTGACCTTCCAAAACTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp TGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCCATCTTCAGCTGGCTCTGATGAGCGTCTTCCATaGGCGGCCAGTTGCCACGGG +
Preference number: 4 (lower is better)
Translates to: CRLPASPECQKSPSSAGSDERLP*AASCHG
Trigger: CCCGTGGCAACTGGCCGCCCATGGAAGACGCTCATC...AGAGCCAGCTGAAGATGGAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp CTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCTTGGTTTTGTTATCCTaGTTCACGTCCTCCACTGTG +
Preference number: 4 (lower is better)
Translates to: LPSTVPSVEERGAGAALVLVLLS*FTSSTV
Trigger: CACAGTGGAGGACGTGAACCAGGATAACAAAACCAA...GACCAGGGCAGCACCAGCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp GGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCATAGAGTGGTGCAGCTaGGCTGGGCAGCGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: GSSLQAEMSPPHSTNDNSIEWCS*AGQRAG
Trigger: CCCAGCACGCTGCCCAGCCCAGCTGCACCACTCTAT...GCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR TCA 90 bp CTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCGGAATTGCTGCACTTTaGGAACAAAAGAGTTGTTGG +
Preference number: 4 (lower is better)
Translates to: LPSTVPSVEERGAGAALVGIAAL*EQKSCW
Trigger: CCAACAACTCTTTTGTTCTCAAAGTGCAGCAATTCC...GACCAGGGCAGCACCAGCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp CTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCCTGAACACCCAGCTGTaGAGATGTTTTTGGAATAGT +
Preference number: 4 (lower is better)
Translates to: LPSTVPSVEERGAGAALVLNTQL*RCFWNS
Trigger: ACTATTCCAAAAACATCTTCACAGCTGGGTGTTCAG...GACCAGGGCAGCACCAGCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp CTGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCCCAGGAGAAAGCCATTaGCCATTGGATTACTGGAAT +
Preference number: 4 (lower is better)
Translates to: LHPLGGQNMPDSSCPIPLPGESH*PLDYWN
Trigger: ATTCCAGTAATCCAATGGTCAATGGCTTTCTCCTGG...GAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp GTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATGCAGGACTACTTTGGAGACTGCTGCTaGGGAGCCAGACCTTGCTGG +
Preference number: 4 (lower is better)
Translates to: VSFVLSLQASCLSHMQDYFGDCC*GARPCW
Trigger: CCAGCAAGGTCTGGCTCCTCAGCAGCAGTCTCCAAA...GTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp CAAGGAATATTTCTGTCCCTGGGACAGGGTGTACTGGTCCTTCTGGGGGCTAGTGATATGCCAGGCCACTaGCCAAGAGGAGACAGACCC +
Preference number: 4 (lower is better)
Translates to: QGIFLSLGQGVLVLLGASDMPGH*PRGDRP
Trigger: GGGTCTGTCTCCTCTTGGTCAGTGGCCTGGCATATC...ACTAGCCCCCAGAAGGACCAGTACACCCTGTCCCAGGGACAGAAATATTCCTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp CCAGTTTTGGAAGGTCACAACTATTCACATGATGTCCTGCTAATGCCGAGCAAGGGCCGGCGGCCATGTTaGGCTTGCCGCTTCTGCTGC +
Preference number: 4 (lower is better)
Translates to: PVLEGHNYSHDVLLMPSKGRRPC*ACRFCC
Trigger: GCAGCAGAAGCGGCAAGCTCAACATGGCCGCCGGCC...CTTGCTCGGCATTAGCAGGACATCATGTGAATAGTTGTGACCTTCCAAAACTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR TCA 90 bp GGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGGGTGAGCTGTCCCCTTCTGTaGAGAACTCTGGCAAAGGCC +
Preference number: 4 (lower is better)
Translates to: GAANHLRPKEYFCPWDRVSCPLL*RTLAKA
Trigger: GGCCTTTGCCAGAGTTCTTCACAGAAGGGGACAGCT...CACCCTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp TATTCCGAACCCACTGAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACGGTCAGGAGAGGTGGTaGGGGCAGTGTGCTGGTCTC +
Preference number: 4 (lower is better)
Translates to: YSEPTEKDLHYRQKCHPHGQERW*GQCAGL
Trigger: GAGACCAGCACACTGCCCTCACCACCTCTCCTGACC...GTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTCAGTGGGTTCGGAATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR TCA 90 bp GAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACATCCCAGGGAAGGCCTTaGAGCCCTTGGGTGCTGCCT +
Preference number: 4 (lower is better)
Translates to: EKDLHYRQKCHPHTARMTSQGRP*SPWVLP
Trigger: AGGCAGCACCCAAGGGCTTCAAGGCCTTCCCTGGGA...TGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp GGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGGGTGATCGGGTACTGCTGGTaGTGCTGCACCTTCTGCTTG +
Preference number: 4 (lower is better)
Translates to: GAANHLRPKEYFCPWDRVIGYCW*CCTFCL
Trigger: CAAGCAGAAGGTGCAGCAGCACCAGCAGTACCCGAT...CACCCTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp GGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGGGTGAAGTGCGATCCTATCTaGACAGGAACCGTGGGGAGC +
Preference number: 4 (lower is better)
Translates to: GAANHLRPKEYFCPWDRVKCDPI*TGTVGS
Trigger: GCTCCCCACGGTTCCTGTGCAGATAGGATCGCACTT...CACCCTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CAAGGAATATTTCTGTCCCTGGGACAGGGTGTACTGGTCCTTCTGGGGGCTAGTGCTTGCCGCTTCTGCTaGATTGCCTGGCTCACTCCT +
Preference number: 4 (lower is better)
Translates to: QGIFLSLGQGVLVLLGASACRFC*IAWLTP
Trigger: AGGAGTGAGCCAGGCAATGCAGCAGAAGCGGCAAGC...ACTAGCCCCCAGAAGGACCAGTACACCCTGTCCCAGGGACAGAAATATTCCTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGTCTCCTGCTCTCCACTaGTGTGTTTCCTTCTCTGTT +
Preference number: 4 (lower is better)
Translates to: SVEERGAGAALVMVEGSESPALH*CVSFSV
Trigger: AACAGAGAAGGAAACACAGCAGTGGAGAGCAGGAGA...CTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCTCCTCTACGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCCATCTTCAGCTGGCTCTGTGGTGAGGGCAGTGTaGTGGTCTCCTGCTCTCCAC +
Preference number: 4 (lower is better)
Translates to: CRLPASPECQKSPSSAGSVVRAV*WSPALH
Trigger: GTGGAGAGCAGGAGACCAGCACACTGCCCTCACCAC...AGAGCCAGCTGAAGATGGAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGGGTGAGGGTGCTGCCATGGTaGTTTGGGTGGCCACGTTTT +
Preference number: 4 (lower is better)
Translates to: GAANHLRPKEYFCPWDRVRVLPW*FGWPRF
Trigger: AAAACGTGGCCACCCAAAGCACCATGGCAGCACCCT...CACCCTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATGCAGGACTACTGTCGTTCCACTGGCTaGCAGGACTGGCGACTGCAT +
Preference number: 4 (lower is better)
Translates to: VSFVLSLQASCLSHMQDYCRSTG*QDWRLH
Trigger: ATGCAGTCGCCAGTCCTGGCAGCCAGTGGAACGACA...GTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TGCTTGGCCGTGCTGAGGACACACTCACACGCATACATGCGCTTTGGCAAGACATCCAGTTCAGGTGTGTaGCCCATGCCAGACAGACTG +
Preference number: 4 (lower is better)
Translates to: CLAVLRTHSHAYMRFGKTSSSGV*PMPDRL
Trigger: CAGTCTGTCTGGCATGGGCCACACACCTGAACTGGA...TGTCTTGCCAAAGCGCATGTATGCGTGTGAGTGTGTCCTCAGCACGGCCAAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp GTGTCAGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTACACTGCATGGGCTGTaGGGGTGTCTGCCTTCGCCC +
Preference number: 4 (lower is better)
Translates to: VSEISIFSWLSGVCYLQSTLHGL*GCLPSP
Trigger: GGGCGAAGGCAGACACCCCCACAGCCCATGCAGTGT...ACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCTGACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TATTCCGAACCCACTGAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACGGAGCTCACACTGCATaGGCTGTGGGGGTGTCTGCC +
Preference number: 4 (lower is better)
Translates to: YSEPTEKDLHYRQKCHPHGAHTA*AVGVSA
Trigger: GGCAGACACCCCCACAGCCCATGCAGTGTGAGCTCC...GTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTCAGTGGGTTCGGAATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp AGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGGGCAGCAGGTCCTTTAAGCACCATGTaGATGGGACTTGAACCACAA +
Preference number: 4 (lower is better)
Translates to: SVVLVLPWSWWKEVRAAGPLSTM*MGLEPQ
Trigger: TTGTGGTTCAAGTCCCATCCACATGGTGCTTAAAGG...ACCTGCTGCCCTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp GGTCTTGGTGCAACCCCTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCCCTTTAAGCACCATGTaGATGGGACTTGAACCACAA +
Preference number: 4 (lower is better)
Translates to: GLGATPPLHSSFRRGAWCPLSTM*MGLEPQ
Trigger: TTGTGGTTCAAGTCCCATCCACATGGTGCTTAAAGG...GCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAGGGGTTGCACCAAGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCCATCTTCAGCTGGCTCTGGAAGGGTGCTGCCATaGTGCTTTGGGTGGCCACGT +
Preference number: 4 (lower is better)
Translates to: CRLPASPECQKSPSSAGSGRVLP*CFGWPR
Trigger: ACGTGGCCACCCAAAGCACCATGGCAGCACCCTTCC...AGAGCCAGCTGAAGATGGAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp GTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATGCAGGACTACACTGGCTGCCAGGACTaGCGACTGCATAGAGTGGTG +
Preference number: 4 (lower is better)
Translates to: VSFVLSLQASCLSHMQDYTGCQD*RLHRVV
Trigger: CACCACTCTATGCAGTCGCCAGTCCTGGCAGCCAGT...GTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp CTGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCGGAATTGCTGCACTTTaGGAACAAAAGAGTTGTTGG +
Preference number: 4 (lower is better)
Translates to: LHPLGGQNMPDSSCPIPLGIAAL*EQKSCW
Trigger: CCAACAACTCTTTTGTTCTCAAAGTGCAGCAATTCC...GAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp TCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGATGACACTTTCTTTGTaGACCGGGATGTCAGTTTGG +
Preference number: 4 (lower is better)
Translates to: SVEERGAGAALVMVEGSEMTLSL*TGMSVW
Trigger: CCAAACTGACATCCCGGTTCACAAAGAAAGTGTCAT...CTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCTCCTCTACGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp AGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGGGCAGCAGGTGCCCATGTTAAAGCCTaGGAGAAAATCTATCACTTC +
Preference number: 4 (lower is better)
Translates to: SVVLVLPWSWWKEVRAAGAHVKA*EKIYHF
Trigger: GAAGTGATAGATTTTCTCTCAGGCTTTAACATGGGC...ACCTGCTGCCCTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp GTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATGCAGGACTACAGGAGCCAATGGCAGTaGTGGCTGCTGTGGTTGCAT +
Preference number: 4 (lower is better)
Translates to: VSFVLSLQASCLSHMQDYRSQWQ*WLLWLH
Trigger: ATGCAACCACAGCAGCCATCACTGCCATTGGCTCCT...GTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp GGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTTTGGAGACTGCTGCTaGGGAGCCAGACCTTGCTGG +
Preference number: 4 (lower is better)
Translates to: GSSLQAEMSPPHSTNDNSFGDCC*GARPCW
Trigger: CCAGCAAGGTCTGGCTCCTCAGCAGCAGTCTCCAAA...GCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR TCA 90 bp GTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATGCAGGACTACGGCTGTGATGGGTGCTaGGATGAGCCATGTACCCAT +
Preference number: 4 (lower is better)
Translates to: VSFVLSLQASCLSHMQDYGCDGC*DEPCTH
Trigger: ATGGGTACATGGCTCATCTCAGCACCCATCACAGCC...GTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGAGAGGGGGCGGTGGATaGCAGGGGAGCGCTCAGTGC +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQRGGGG*QGSAQC
Trigger: GCACTGAGCGCTCCCCTGGCATCCACCGCCCCCTCT...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp TACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCACAGGTGTGTGGCCCATaGCAGACAGACTGCTGTTCT +
Preference number: 4 (lower is better)
Translates to: YRQKCHPHTARMTTAEASQVCGP*QTDCCS
Trigger: AGAACAGCAGTCTGTCTGGCATGGGCCACACACCTG...TGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp GGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGGGTGTCACTGCAGCAGCCCTaGAAACTTGCTTCAATGGCC +
Preference number: 4 (lower is better)
Translates to: GAANHLRPKEYFCPWDRVSLQQP*KLASMA
Trigger: GGCCATTGAAGCAAGTTTGCAGGGCTGCTGCAGTGA...CACCCTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAAAGTGCGATCCTATCTaGACAGGAACCGTGGGGAGC +
Preference number: 4 (lower is better)
Translates to: YRQKCHPHTARMTTAEASKCDPI*TGTVGS
Trigger: GCTCCCCACGGTTCCTGTGCAGATAGGATCGCACTT...TGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp TCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGTCGCAGATATCCCTTTaGAGCTGGATCTGTATACAG +
Preference number: 4 (lower is better)
Translates to: SVEERGAGAALVMVEGSESQISL*SWICIQ
Trigger: CTGTATACAGATCCAGCTGCAAAGGGATATCTGCGA...CTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCTCCTCTACGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCTTTTTGGAATAGTGTGTaGTGCCAGAGTTGGTGCATG +
Preference number: 4 (lower is better)
Translates to: CTPWEARICLTAVAQSRSFWNSV*CQSWCM
Trigger: CATGCACCAACTCTGGCAGCACACACTATTCCAAAA...AGAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGTGCCAGAGGCGTGTGTaGTCCAGCCTGGGGTGGCCG +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQCQRRV*SSLGWP
Trigger: CGGCCACCCCAGGCTGGAGCACACACGCCTCTGGCA...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GTCTGCTACCTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAACTGGGCTGGGCAGCGTaGTGGGCATCGGGGAAGGGT +
Preference number: 4 (lower is better)
Translates to: VCYLQSLRNQALKTWSCQLGWAA*WASGKG
Trigger: ACCCTTCCCCGATGCCCAGCACGCTGCCCAGCCCAG...TTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TATTCCGAACCCACTGAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACGCCAGGACTGGCGACTaGATAGAGTGGTGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: YSEPTEKDLHYRQKCHPHARTGD*IEWCSW
Trigger: CCAGCTGCACCACTCTATGCAGTCGCCAGTCCTGGC...GTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTCAGTGGGTTCGGAATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp GTGTCAGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTGGGGACTGCAGCATCTaGACGGTGTCGTTCCACTGG +
Preference number: 4 (lower is better)
Translates to: VSEISIFSWLSGVCYLQSGDCSI*TVSFHW
Trigger: CCAGTGGAACGACACCGTGCAGATGCTGCAGTCCCC...ACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCTGACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CAAGGAATATTTCTGTCCCTGGGACAGGGTGTACTGGTCCTTCTGGGGGCTAGTCTTGAAGCCCTTGGGTaGTGCCTTATGTGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: QGIFLSLGQGVLVLLGASLEALG*CLMCWW
Trigger: CCACCAGCACATAAGGCAGCACCCAAGGGCTTCAAG...ACTAGCCCCCAGAAGGACCAGTACACCCTGTCCCAGGGACAGAAATATTCCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGGAACAAAAGAGTTGTTaGACTTCGATTCCTGCCAGG +
Preference number: 4 (lower is better)
Translates to: SVEERGAGAALVMVEGSEEQKSC*TSIPAR
Trigger: CCTGGCAGGAATCGAAGTCCAACAACTCTTTTGTTC...CTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCTCCTCTACGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCCATCTTCAGCTGGCTCTTCTGCACAGGAACCGTaGGGAGCTCACACTGCATGG +
Preference number: 4 (lower is better)
Translates to: CRLPASPECQKSPSSAGSSAQEP*GAHTAW
Trigger: CCATGCAGTGTGAGCTCCCCACGGTTCCTGTGCAGA...AGAGCCAGCTGAAGATGGAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCTCCTTTAAGCACCATGTaGATGGGACTTGAACCACAA +
Preference number: 4 (lower is better)
Translates to: CTPWEARICLTAVAQSRSPLSTM*MGLEPQ
Trigger: TTGTGGTTCAAGTCCCATCCACATGGTGCTTAAAGG...AGAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCTTATTGCCCATCATTTTaGCCCTTTCCTCTGAACACC +
Preference number: 4 (lower is better)
Translates to: CTPWEARICLTAVAQSRSYCPSF*PFPLNT
Trigger: GGTGTTCAGAGGAAAGGGCCAAAATGATGGGCAATA...AGAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TGCTTGGCCGTGCTGAGGACACACTCACACGCATACATGCGCTTTGGCAAGACATCTGCTGTGATCCAATaGGTTGCAGCAGGTGCTGGT +
Preference number: 4 (lower is better)
Translates to: CLAVLRTHSHAYMRFGKTSAVIQ*VAAGAG
Trigger: ACCAGCACCTGCTGCAACCCATTGGATCACAGCAGA...TGTCTTGCCAAAGCGCATGTATGCGTGTGAGTGTGTCCTCAGCACGGCCAAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGGCCACGGGGGTTGCCTaGCCGGCGGCCATGTTGAGC +
Preference number: 4 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVATGVA*PAAMLS
Trigger: GCTCAACATGGCCGCCGGCCAGGCAACCCCCGTGGC...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp ACTTGGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGACTGGCTGCCAGGACTaGCGACTGCATAGAGTGGTG +
Preference number: 4 (lower is better)
Translates to: TWSCQSPQTQGIFLSLGQTGCQD*RLHRVV
Trigger: CACCACTCTATGCAGTCGCCAGTCCTGGCAGCCAGT...CTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCCAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TGCTTGGCCGTGCTGAGGACACACTCACACGCATACATGCGCTTTGGCAAGACAAGGTGGGGGCTGTGGTaGTGTCTGAACATAGGTGAA +
Preference number: 4 (lower is better)
Translates to: CLAVLRTHSHAYMRFGKTRWGLW*CLNIGE
Trigger: TTCACCTATGTTCAGACACCACCACAGCCCCCACCT...TGTCTTGCCAAAGCGCATGTATGCGTGTGAGTGTGTCCTCAGCACGGCCAAGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp TATTCCGAACCCACTGAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACTGCCTTATGTGCTGGTaGAGGTGGGGGCTGTGGTGG +
Preference number: 4 (lower is better)
Translates to: YSEPTEKDLHYRQKCHPHCLMCW*RWGLWW
Trigger: CCACCACAGCCCCCACCTCCACCAGCACATAAGGCA...GTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTCAGTGGGTTCGGAATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR TCA 90 bp CCAGTTTTGGAAGGTCACAACTATTCACATGATGTCCTGCTAATGCCGAGCAAGCTTCGCCCTGTCTGCTaGGCTTCCGCCTCACTGCAG +
Preference number: 4 (lower is better)
Translates to: PVLEGHNYSHDVLLMPSKLRPVC*ASASLQ
Trigger: CTGCAGTGAGGCGGAAGCTCAGCAGACAGGGCGAAG...CTTGCTCGGCATTAGCAGGACATCATGTGAATAGTTGTGACCTTCCAAAACTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR TCA 90 bp GTCTGCTACCTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAAGCAGGCGCCCGAGGCTaGGGTGGAGTCTGCTGTGAT +
Preference number: 4 (lower is better)
Translates to: VCYLQSLRNQALKTWSCQAGARG*GGVCCD
Trigger: ATCACAGCAGACTCCACCTCAGCCTCGGGCGCCTGC...TTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATGCAGGACTACTCACTGCAGCAGCCCTaGAAACTTGCTTCAATGGCC +
Preference number: 4 (lower is better)
Translates to: VSFVLSLQASCLSHMQDYSLQQP*KLASMA
Trigger: GGCCATTGAAGCAAGTTTGCAGGGCTGCTGCAGTGA...GTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCCATCTTCAGCTGGCTCTTACTGGACTTGGGGCTaGTGCTGCTTTGGAGACTGC +
Preference number: 4 (lower is better)
Translates to: CRLPASPECQKSPSSAGSYWTWG*CCFGDC
Trigger: GCAGTCTCCAAAGCAGCAGCAGCCCCAAGTCCAGTA...AGAGCCAGCTGAAGATGGAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp ACTTGGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGTGCCTGGCTCACTCCTaGCACATAGCGTGCGAATTC +
Preference number: 4 (lower is better)
Translates to: TWSCQSPQTQGIFLSLGQCLAHS*HIACEF
Trigger: GAATTCGCACGCTATGTGGCAGGAGTGAGCCAGGCA...CTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCCAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TATTCCGAACCCACTGAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACGAAGCCCTTGGGTGCTaGCTTATGTGCTGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: YSEPTEKDLHYRQKCHPHEALGC*LMCWWR
Trigger: CCTCCACCAGCACATAAGGCAGCACCCAAGGGCTTC...GTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTCAGTGGGTTCGGAATA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp GGCACTATGAAAATGAGAGTACTGCAGAAGACTAGAACTGGAAACACAGCACTGTGGGGCATGGCATGGTaGCAGCTGCCTGCAGCGGTC +
Preference number: 4 (lower is better)
Translates to: GTMKMRVLQKTRTGNTALWGMAW*QLPAAV
Trigger: GACCGCTGCAGGCAGCTGCCACCATGCCATGCCCCA...CAGTGCTGTGTTTCCAGTTCTAGTCTTCTGCAGTACTCTCATTTTCATAGTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp AGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAGGCTTAGAGATGCCCTGCTaGATGTCAGCAATGGGAGTA +
Preference number: 4 (lower is better)
Translates to: RQKCHPHTARMTTAEASGLEMPC*MSAMGV
Trigger: TACTCCCATTGCTGACATCCAGCAGGGCATCTCTAA...GCCTGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp TCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGTTTAGCTCTTTTAGCTaGTGCTCAGGAATTGCTGCA +
Preference number: 4 (lower is better)
Translates to: SVEERGAGAALVMVEGSEFSSFS*CSGIAA
Trigger: TGCAGCAATTCCTGAGCACCAGCTAAAAGAGCTAAA...CTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCTCCTCTACGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp AGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGGGCAGCAGGTATTGCATATTCACAGTaGCCTAAGCTTTCCAAAGCT +
Preference number: 4 (lower is better)
Translates to: SVVLVLPWSWWKEVRAAGIAYSQ*PKLSKA
Trigger: AGCTTTGGAAAGCTTAGGCCACTGTGAATATGCAAT...ACCTGCTGCCCTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGACAGACCCGCTGCCATaGGCTGTGATGGGTGCTGAG +
Preference number: 4 (lower is better)
Translates to: RNLHLQLALRGLLPSKFETDPLP*AVMGAE
Trigger: CTCAGCACCCATCACAGCCCATGGCAGCGGGTCTGT...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp GGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTCTCATCACTGGAACTaGCCGAGTCTCCCTGAGCTC +
Preference number: 4 (lower is better)
Translates to: GSSLQAEMSPPHSTNDNSSHHWN*PSLPEL
Trigger: GAGCTCAGGGAGACTCGGCCAGTTCCAGTGATGAGA...GCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp GAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACATCACGTCCTCCACTGTaGTCAGGAGAGGTGGTGAGG +
Preference number: 4 (lower is better)
Translates to: EKDLHYRQKCHPHTARMTSRPPL*SGEVVR
Trigger: CCTCACCACCTCTCCTGACCACAGTGGAGGACGTGA...TGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGACGGTGTCGTTCCACTaGCTGCCAGGACTGGCGACT +
Preference number: 4 (lower is better)
Translates to: RNLHLQLALRGLLPSKFETVSFH*LPGLAT
Trigger: AGTCGCCAGTCCTGGCAGCCAGTGGAACGACACCGT...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp GGCACTATGAAAATGAGAGTACTGCAGAAGACTAGAACTGGAAACACAGCACTGCTTCGCCCTGTCTGCTaGGCTTCCGCCTCACTGCAG +
Preference number: 4 (lower is better)
Translates to: GTMKMRVLQKTRTGNTALLRPVC*ASASLQ
Trigger: CTGCAGTGAGGCGGAAGCTCAGCAGACAGGGCGAAG...CAGTGCTGTGTTTCCAGTTCTAGTCTTCTGCAGTACTCTCATTTTCATAGTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR TCA 90 bp GTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATGCAGGACTACGCCAGAGTTGGTGCATaGCACTTTCTTTGTGAACCG +
Preference number: 4 (lower is better)
Translates to: VSFVLSLQASCLSHMQDYARVGA*HFLCEP
Trigger: CGGTTCACAAAGAAAGTGTCATGCACCAACTCTGGC...GTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp AGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAGGCACTTCCTGCATTTCCTaGTCAGTGGGTAAGTTCATG +
Preference number: 4 (lower is better)
Translates to: RQKCHPHTARMTTAEASGTSCIS*SVGKFM
Trigger: CATGAACTTACCCACTGATCAGGAAATGCAGGAAGT...GCCTGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR TCA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGGATATGCCAGGCCACTaGCCAAGAGGAGACAGACCC +
Preference number: 4 (lower is better)
Translates to: RNLHLQLALRGLLPSKFEDMPGH*PRGDRP
Trigger: GGGTCTGTCTCCTCTTGGTCAGTGGCCTGGCATATC...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp CAAGGAATATTTCTGTCCCTGGGACAGGGTGTACTGGTCCTTCTGGGGGCTAGTTGTACAAGTCAGAGCTaGGATCAGATATGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: QGIFLSLGQGVLVLLGASCTSQS*DQICQA
Trigger: GGCCTGGCATATCTGATCTCAGCTCTGACTTGTACA...ACTAGCCCCCAGAAGGACCAGTACACCCTGTCCCAGGGACAGAAATATTCCTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp GGCACTATGAAAATGAGAGTACTGCAGAAGACTAGAACTGGAAACACAGCACTGAAAGGCCAGGTCCGATaGGCGTCTTCCATGGGCGGC +
Preference number: 4 (lower is better)
Translates to: GTMKMRVLQKTRTGNTALKGQVR*ASSMGG
Trigger: GCCGCCCATGGAAGACGCTCATCGGACCTGGCCTTT...CAGTGCTGTGTTTCCAGTTCTAGTCTTCTGCAGTACTCTCATTTTCATAGTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR TCA 90 bp GTCTGCTACCTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCCCAGGGAAGGCCTTaGAGCCCTTGGGTGCTGCCT +
Preference number: 4 (lower is better)
Translates to: VCYLQSLRNQALKTWSCQSQGRP*SPWVLP
Trigger: AGGCAGCACCCAAGGGCTTCAAGGCCTTCCCTGGGA...TTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TGCTTGGCCGTGCTGAGGACACACTCACACGCATACATGCGCTTTGGCAAGACATGGCTGAGGTCAATCTaGTGGCTGCTTCCATTACAT +
Preference number: 4 (lower is better)
Translates to: CLAVLRTHSHAYMRFGKTWLRSI*WLLPLH
Trigger: ATGTAATGGAAGCAGCCAGCAGATTGACCTCAGCCA...TGTCTTGCCAAAGCGCATGTATGCGTGTGAGTGTGTCCTCAGCACGGCCAAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp GAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACATGGCCGAACAGCAGCTaGACAGCAGTCTTACAGGCA +
Preference number: 4 (lower is better)
Translates to: EKDLHYRQKCHPHTARMTWPNSS*TAVLQA
Trigger: TGCCTGTAAGACTGCTGTGCAGCTGCTGTTCGGCCA...TGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp TACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAGCAGTCCCGAGGATTTaGTTCCATTTCCAGAAGGCA +
Preference number: 4 (lower is better)
Translates to: YRQKCHPHTARMTTAEASAVPRI*FHFQKA
Trigger: TGCCTTCTGGAAATGGAAGCAAATCCTCGGGACTGC...TGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp TACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCATTGCCATCATCCCCATaGAGGAAGTTCTCACGTCTC +
Preference number: 4 (lower is better)
Translates to: YRQKCHPHTARMTTAEASLPSSP*RKFSRL
Trigger: GAGACGTGAGAACTTCCTGCATGGGGATGATGGCAA...TGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp GTGTCAGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTGCCTGGCTCACTCCTaGCACATAGCGTGCGAATTC +
Preference number: 4 (lower is better)
Translates to: VSEISIFSWLSGVCYLQSCLAHS*HIACEF
Trigger: GAATTCGCACGCTATGTGGCAGGAGTGAGCCAGGCA...ACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCTGACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GCATCTTATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCACCATGGGCGGCCAGTTaGCACGGGGGTTGCCTGGCC +
Preference number: 4 (lower is better)
Translates to: ASYISLNEDSAELTNLQPPWAAS*HGGCLA
Trigger: GGCCAGGCAACCCCCGTGGCAACTGGCCGCCCATGG...TGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATAAGATGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GTCTGCTACCTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAAGGGTGCTGCCTTATGTaGTGGTGGAGGTGGGGGCTG +
Preference number: 4 (lower is better)
Translates to: VCYLQSLRNQALKTWSCQGCCLM*WWRWGL
Trigger: CAGCCCCCACCTCCACCAGCACATAAGGCAGCACCC...TTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp GGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGGGTGTTAGAGATGCCCTGCTaGATGTCAGCAATGGGAGTA +
Preference number: 4 (lower is better)
Translates to: GAANHLRPKEYFCPWDRVLEMPC*MSAMGV
Trigger: TACTCCCATTGCTGACATCCAGCAGGGCATCTCTAA...CACCCTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp TGCTTGGCCGTGCTGAGGACACACTCACACGCATACATGCGCTTTGGCAAGACAGCGTGGGTCAAAAACTaGAAATGGACTTGCACCACT +
Preference number: 4 (lower is better)
Translates to: CLAVLRTHSHAYMRFGKTAWVKN*KWTCTT
Trigger: AGTGGTGCAAGTCCATTTCCAGTTTTTGACCCACGC...TGTCTTGCCAAAGCGCATGTATGCGTGTGAGTGTGTCCTCAGCACGGCCAAGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp GGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGGGTGACCGGGATGTCAGTTTaGAGAAAGTCTTCTGCAGTC +
Preference number: 4 (lower is better)
Translates to: GAANHLRPKEYFCPWDRVTGMSV*RKSSAV
Trigger: GACTGCAGAAGACTTTCTCCAAACTGACATCCCGGT...CACCCTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp CCAGTTTTGGAAGGTCACAACTATTCACATGATGTCCTGCTAATGCCGAGCAAGACGCCTTGTCACCAGTaGGGACCCCTGATGGGACTG +
Preference number: 4 (lower is better)
Translates to: PVLEGHNYSHDVLLMPSKTPCHQ*GPLMGL
Trigger: CAGTCCCATCAGGGGTCCCCACTGGTGACAAGGCGT...CTTGCTCGGCATTAGCAGGACATCATGTGAATAGTTGTGACCTTCCAAAACTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp GAGGTGCTTATTAAGCATGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCTCACGTCCTCCACTGTaGTCAGGAGAGGTGGTGAGG +
Preference number: 4 (lower is better)
Translates to: EVLIKHADCQHPLSVRNLSRPPL*SGEVVR
Trigger: CCTCACCACCTCTCCTGACCACAGTGGAGGACGTGA...GAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCATGCTTAATAAGCACCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TATTCCGAACCCACTGAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACTGGTATTGCAGTCATTaGCTGCAGCCCACACAGGGG +
Preference number: 4 (lower is better)
Translates to: YSEPTEKDLHYRQKCHPHWYCSH*LQPTQG
Trigger: CCCCTGTGTGGGCTGCAGCCAATGACTGCAATACCA...GTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTCAGTGGGTTCGGAATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp ACTTGGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGAGGTGGGGGCTGTGGTaGTGTCTGAACATAGGTGAA +
Preference number: 4 (lower is better)
Translates to: TWSCQSPQTQGIFLSLGQRWGLW*CLNIGE
Trigger: TTCACCTATGTTCAGACACCACCACAGCCCCCACCT...CTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCCAAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp GGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGGGTGATGACACTTTCTTTGTaGACCGGGATGTCAGTTTGG +
Preference number: 4 (lower is better)
Translates to: GAANHLRPKEYFCPWDRVMTLSL*TGMSVW
Trigger: CCAAACTGACATCCCGGTTCACAAAGAAAGTGTCAT...CACCCTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGAGGAGCCAATGGCAGTaGTGGCTGCTGTGGTTGCAT +
Preference number: 4 (lower is better)
Translates to: RNLHLQLALRGLLPSKFERSQWQ*WLLWLH
Trigger: ATGCAACCACAGCAGCCATCACTGCCATTGGCTCCT...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp GAGGTGCTTATTAAGCATGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCGGCTGTGATGGGTGCTaGGATGAGCCATGTACCCAT +
Preference number: 4 (lower is better)
Translates to: EVLIKHADCQHPLSVRNLGCDGC*DEPCTH
Trigger: ATGGGTACATGGCTCATCTCAGCACCCATCACAGCC...GAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCATGCTTAATAAGCACCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp TATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTGTACGGCCGGCGGCCATGTTaGGCTTGCCGCTTCTGCTGC +
Preference number: 4 (lower is better)
Translates to: YISLNEDSAELTNLQPVYGRRPC*ACRFCC
Trigger: GCAGCAGAAGCGGCAAGCTCAACATGGCCGCCGGCC...GTACACTGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGGGTCAGGAGAGGTGGTaGGGGCAGTGTGCTGGTCTC +
Preference number: 4 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVGQERW*GQCAGL
Trigger: GAGACCAGCACACTGCCCTCACCACCTCTCCTGACC...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGTCCCAGGGAAGGCCTTaGAGCCCTTGGGTGCTGCCT +
Preference number: 4 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVSQGRP*SPWVLP
Trigger: AGGCAGCACCCAAGGGCTTCAAGGCCTTCCCTGGGA...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGTGCTGCTGCACCTTCTaGTTGGACCCGCCAAGCAGG +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQCCCTF*LDPPSR
Trigger: CCTGCTTGGCGGGTCCAAGCAGAAGGTGCAGCAGCA...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp CCAGTTTTGGAAGGTCACAACTATTCACATGATGTCCTGCTAATGCCGAGCAAGTCAGGCATCGGGTACTaGTGGTGCTGCTGCACCTTC +
Preference number: 4 (lower is better)
Translates to: PVLEGHNYSHDVLLMPSKSGIGY*WCCCTF
Trigger: GAAGGTGCAGCAGCACCAGCAGTACCCGATGCCTGA...CTTGCTCGGCATTAGCAGGACATCATGTGAATAGTTGTGACCTTCCAAAACTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp TGCTTGGCCGTGCTGAGGACACACTCACACGCATACATGCGCTTTGGCAAGACAAGCTCTTTTAGCTGGTaGTCAGGAATTGCTGCACTT +
Preference number: 4 (lower is better)
Translates to: CLAVLRTHSHAYMRFGKTSSFSW*SGIAAL
Trigger: AAGTGCAGCAATTCCTGAGCACCAGCTAAAAGAGCT...TGTCTTGCCAAAGCGCATGTATGCGTGTGAGTGTGTCCTCAGCACGGCCAAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp GGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCGCAGCCCTGCAAACTTaGTTCAATGGCCTTTGGGTT +
Preference number: 4 (lower is better)
Translates to: GSSLQAEMSPPHSTNDNSAALQT*FNGLWV
Trigger: AACCCAAAGGCCATTGAAGCAAGTTTGCAGGGCTGC...GCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp ACTTGGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGGCAGCCCTGCAAACTTaGTTCAATGGCCTTTGGGTT +
Preference number: 4 (lower is better)
Translates to: TWSCQSPQTQGIFLSLGQAALQT*FNGLWV
Trigger: AACCCAAAGGCCATTGAAGCAAGTTTGCAGGGCTGC...CTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCCAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GTGTCAGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTCACTGCAGCAGCCCTaGAAACTTGCTTCAATGGCC +
Preference number: 4 (lower is better)
Translates to: VSEISIFSWLSGVCYLQSSLQQP*KLASMA
Trigger: GGCCATTGAAGCAAGTTTGCAGGGCTGCTGCAGTGA...ACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCTGACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGAAGTGCGATCCTATCTaGACAGGAACCGTGGGGAGC +
Preference number: 4 (lower is better)
Translates to: RNLHLQLALRGLLPSKFEKCDPI*TGTVGS
Trigger: GCTCCCCACGGTTCCTGTGCAGATAGGATCGCACTT...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGGGTGTCGCAGATATCCCTTTaGAGCTGGATCTGTATACAG +
Preference number: 4 (lower is better)
Translates to: GAANHLRPKEYFCPWDRVSQISL*SWICIQ
Trigger: CTGTATACAGATCCAGCTGCAAAGGGATATCTGCGA...CACCCTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCCATCTTCAGCTGGCTCTGCAGTCCCGAGGATTTaGTTCCATTTCCAGAAGGCA +
Preference number: 4 (lower is better)
Translates to: CRLPASPECQKSPSSAGSAVPRI*FHFQKA
Trigger: TGCCTTCTGGAAATGGAAGCAAATCCTCGGGACTGC...AGAGCCAGCTGAAGATGGAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCCATCTTCAGCTGGCTCTTTGCCATCATCCCCATaGAGGAAGTTCTCACGTCTC +
Preference number: 4 (lower is better)
Translates to: CRLPASPECQKSPSSAGSLPSSP*RKFSRL
Trigger: GAGACGTGAGAACTTCCTGCATGGGGATGATGGCAA...AGAGCCAGCTGAAGATGGAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GAGGTGCTTATTAAGCATGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCTGCCTGGCTCACTCCTaGCACATAGCGTGCGAATTC +
Preference number: 4 (lower is better)
Translates to: EVLIKHADCQHPLSVRNLCLAHS*HIACEF
Trigger: GAATTCGCACGCTATGTGGCAGGAGTGAGCCAGGCA...GAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCATGCTTAATAAGCACCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGCCGCTTCTGCTGCATTaGCTGGCTCACTCCTGCCAC +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQPLLLH*LAHSCH
Trigger: GTGGCAGGAGTGAGCCAGGCAATGCAGCAGAAGCGG...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp GTCTGCTACCTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAAGCTGCACCTTCTGCTTaGACCCGCCAAGCAGGAAGC +
Preference number: 4 (lower is better)
Translates to: VCYLQSLRNQALKTWSCQAAPSA*TRQAGS
Trigger: GCTTCCTGCTTGGCGGGTCCAAGCAGAAGGTGCAGC...TTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp AGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAGGCGTCAAAAACTGGAAATaGACTTGCACCACTGTCAAG +
Preference number: 4 (lower is better)
Translates to: RQKCHPHTARMTTAEASGVKNWK*TCTTVK
Trigger: CTTGACAGTGGTGCAAGTCCATTTCCAGTTTTTGAC...GCCTGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGTCCAGTTCAGGTGTGTaGCCCATGCCAGACAGACTG +
Preference number: 4 (lower is better)
Translates to: RNLHLQLALRGLLPSKFESSSGV*PMPDRL
Trigger: CAGTCTGTCTGGCATGGGCCACACACCTGAACTGGA...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp TGCTTGGCCGTGCTGAGGACACACTCACACGCATACATGCGCTTTGGCAAGACAGAACAAAAGAGTTGTTaGACTTCGATTCCTGCCAGG +
Preference number: 4 (lower is better)
Translates to: CLAVLRTHSHAYMRFGKTEQKSC*TSIPAR
Trigger: CCTGGCAGGAATCGAAGTCCAACAACTCTTTTGTTC...TGTCTTGCCAAAGCGCATGTATGCGTGTGAGTGTGTCCTCAGCACGGCCAAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGGGAGCTCACACTGCATaGGCTGTGGGGGTGTCTGCC +
Preference number: 4 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVGAHTA*AVGVSA
Trigger: GGCAGACACCCCCACAGCCCATGCAGTGTGAGCTCC...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TGCTTGGCCGTGCTGAGGACACACTCACACGCATACATGCGCTTTGGCAAGACATATTGCCCATCATTTTaGCCCTTTCCTCTGAACACC +
Preference number: 4 (lower is better)
Translates to: CLAVLRTHSHAYMRFGKTYCPSF*PFPLNT
Trigger: GGTGTTCAGAGGAAAGGGCCAAAATGATGGGCAATA...TGTCTTGCCAAAGCGCATGTATGCGTGTGAGTGTGTCCTCAGCACGGCCAAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGACGCCTTGTCACCAGTaGGGACCCCTGATGGGACTG +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQTPCHQ*GPLMGL
Trigger: CAGTCCCATCAGGGGTCCCCACTGGTGACAAGGCGT...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp GTGTCAGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTCTGCTGTGATCCAATaGGTTGCAGCAGGTGCTGGT +
Preference number: 4 (lower is better)
Translates to: VSEISIFSWLSGVCYLQSSAVIQ*VAAGAG
Trigger: ACCAGCACCTGCTGCAACCCATTGGATCACAGCAGA...ACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCTGACAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TGCTTGGCCGTGCTGAGGACACACTCACACGCATACATGCGCTTTGGCAAGACATTATTTCTAGGTCCCTaGGGCTTCTGTCCCAAAACT +
Preference number: 4 (lower is better)
Translates to: CLAVLRTHSHAYMRFGKTLFLGP*GFCPKT
Trigger: AGTTTTGGGACAGAAGCCCCAGGGACCTAGAAATAA...TGTCTTGCCAAAGCGCATGTATGCGTGTGAGTGTGTCCTCAGCACGGCCAAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGTCTCATCACTGGAACTaGCCGAGTCTCCCTGAGCTC +
Preference number: 4 (lower is better)
Translates to: RNLHLQLALRGLLPSKFESHHWN*PSLPEL
Trigger: GAGCTCAGGGAGACTCGGCCAGTTCCAGTGATGAGA...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp ACTTGGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGACAGACTGTCCCCATTaGCTGAAGAGGTCTCATCAC +
Preference number: 4 (lower is better)
Translates to: TWSCQSPQTQGIFLSLGQTDCPH*LKRSHH
Trigger: GTGATGAGACCTCTTCAGCCAATGGGGACAGTCTGT...CTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCCAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TGCTTGGCCGTGCTGAGGACACACTCACACGCATACATGCGCTTTGGCAAGACATGGGTGGCCACGTTTTaGTTTTGTTATCCTGGTTCA +
Preference number: 4 (lower is better)
Translates to: CLAVLRTHSHAYMRFGKTWVATF*FCYPGS
Trigger: TGAACCAGGATAACAAAACCAAAACGTGGCCACCCA...TGTCTTGCCAAAGCGCATGTATGCGTGTGAGTGTGTCCTCAGCACGGCCAAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp GAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAGCTGCCATGGTGCTTTaGGTGGCCACGTTTTGGTTT +
Preference number: 4 (lower is better)
Translates to: EKDLHYRQKCHPHTARMTAAMVL*VATFWF
Trigger: AAACCAAAACGTGGCCACCCAAAGCACCATGGCAGC...TGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp GGCACTATGAAAATGAGAGTACTGCAGAAGACTAGAACTGGAAACACAGCACTGGGAAGGGTGCTGCCATaGTGCTTTGGGTGGCCACGT +
Preference number: 4 (lower is better)
Translates to: GTMKMRVLQKTRTGNTALGRVLP*CFGWPR
Trigger: ACGTGGCCACCCAAAGCACCATGGCAGCACCCTTCC...CAGTGCTGTGTTTCCAGTTCTAGTCTTCTGCAGTACTCTCATTTTCATAGTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp TATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTGTACGGCTGGGCAGCGTGCTaGGCATCGGGGAAGGGTGCT +
Preference number: 4 (lower is better)
Translates to: YISLNEDSAELTNLQPVYGWAAC*ASGKGA
Trigger: AGCACCCTTCCCCGATGCCCAGCACGCTGCCCAGCC...GTACACTGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp GTCTGCTACCTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAAACGGTGTCGTTCCACTaGCTGCCAGGACTGGCGACT +
Preference number: 4 (lower is better)
Translates to: VCYLQSLRNQALKTWSCQTVSFH*LPGLAT
Trigger: AGTCGCCAGTCCTGGCAGCCAGTGGAACGACACCGT...TTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGTGCCTTATGTGCTGGTaGAGGTGGGGGCTGTGGTGG +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQCLMCW*RWGLWW
Trigger: CCACCACAGCCCCCACCTCCACCAGCACATAAGGCA...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp GTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATGCAGGACTACAGACTGAATTCCTTCTaGTCTGTGAAGTTTGCAGCC +
Preference number: 4 (lower is better)
Translates to: VSFVLSLQASCLSHMQDYRLNSF*SVKFAA
Trigger: GGCTGCAAACTTCACAGATCAGAAGGAATTCAGTCT...GTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR TCA 90 bp TGCTTGGCCGTGCTGAGGACACACTCACACGCATACATGCGCTTTGGCAAGACAGGAATTGCTGCACTTTaGGAACAAAAGAGTTGTTGG +
Preference number: 4 (lower is better)
Translates to: CLAVLRTHSHAYMRFGKTGIAAL*EQKSCW
Trigger: CCAACAACTCTTTTGTTCTCAAAGTGCAGCAATTCC...TGTCTTGCCAAAGCGCATGTATGCGTGTGAGTGTGTCCTCAGCACGGCCAAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR TCA 90 bp GTGTCAGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTGAAGGCAGGTCAGCCTaGTTCCCAAAATCGCAGATA +
Preference number: 4 (lower is better)
Translates to: VSEISIFSWLSGVCYLQSEGRSA*FPKSQI
Trigger: TATCTGCGATTTTGGGAATCAGGCTGACCTGCCTTC...ACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCTGACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp GTGTCAGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTGCCAGAGTTGGTGCATaGCACTTTCTTTGTGAACCG +
Preference number: 4 (lower is better)
Translates to: VSEISIFSWLSGVCYLQSARVGA*HFLCEP
Trigger: CGGTTCACAAAGAAAGTGTCATGCACCAACTCTGGC...ACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCTGACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp GTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATGCAGGACTACACTTCCTGCATTTCCTaGTCAGTGGGTAAGTTCATG +
Preference number: 4 (lower is better)
Translates to: VSFVLSLQASCLSHMQDYTSCIS*SVGKFM
Trigger: CATGAACTTACCCACTGATCAGGAAATGCAGGAAGT...GTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp TGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCCATCTTCAGCTGGCTCTGTGTCTGAACATAGGTaGAGGAGGTGGTATTGCAGT +
Preference number: 4 (lower is better)
Translates to: CRLPASPECQKSPSSAGSVSEHR*RRWYCS
Trigger: ACTGCAATACCACCTCCTTCACCTATGTTCAGACAC...AGAGCCAGCTGAAGATGGAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp ACTTGGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGGTGTCTGAACATAGGTaGAGGAGGTGGTATTGCAGT +
Preference number: 4 (lower is better)
Translates to: TWSCQSPQTQGIFLSLGQVSEHR*RRWYCS
Trigger: ACTGCAATACCACCTCCTTCACCTATGTTCAGACAC...CTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCCAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGTGCTGCTGCACCTTCTaGTTGGACCCGCCAAGCAGG +
Preference number: 4 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVCCCTF*LDPPSR
Trigger: CCTGCTTGGCGGGTCCAAGCAGAAGGTGCAGCAGCA...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp GTGTCAGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTCTGATCTGTGAAGTTTaGAGCCCCAGCACTGAGTTC +
Preference number: 4 (lower is better)
Translates to: VSEISIFSWLSGVCYLQSLICEV*SPSTEF
Trigger: GAACTCAGTGCTGGGGCTGCAAACTTCACAGATCAG...ACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCTGACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGACCGGCTGGACTTTCTaGAAGGCGTGGGTCAAAAAC +
Preference number: 4 (lower is better)
Translates to: RNLHLQLALRGLLPSKFETGWTF*KAWVKN
Trigger: GTTTTTGACCCACGCCTTGCAGAAAGTCCAGCCGGT...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp TATTCCGAACCCACTGAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACGCAGCCCTGCAAACTTaGTTCAATGGCCTTTGGGTT +
Preference number: 4 (lower is better)
Translates to: YSEPTEKDLHYRQKCHPHAALQT*FNGLWV
Trigger: AACCCAAAGGCCATTGAAGCAAGTTTGCAGGGCTGC...GTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTCAGTGGGTTCGGAATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp GTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATGCAGGACTACTTTTGGAATAGTGTGTaGTGCCAGAGTTGGTGCATG +
Preference number: 4 (lower is better)
Translates to: VSFVLSLQASCLSHMQDYFWNSV*CQSWCM
Trigger: CATGCACCAACTCTGGCAGCACACACTATTCCAAAA...GTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TGCTTGGCCGTGCTGAGGACACACTCACACGCATACATGCGCTTTGGCAAGACATATTGTCCATATAGCTaGTCACTAGACCCAAGCTGT +
Preference number: 4 (lower is better)
Translates to: CLAVLRTHSHAYMRFGKTYCPYS*SLDPSC
Trigger: ACAGCTTGGGTCTAGTGAGCAGCTATATGGACAATA...TGTCTTGCCAAAGCGCATGTATGCGTGTGAGTGTGTCCTCAGCACGGCCAAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp GGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGGGTGTATTGTCCATATAGCTaGTCACTAGACCCAAGCTGT +
Preference number: 4 (lower is better)
Translates to: GAANHLRPKEYFCPWDRVYCPYS*SLDPSC
Trigger: ACAGCTTGGGTCTAGTGAGCAGCTATATGGACAATA...CACCCTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGCCGCTTCTGCTGCATTaGCTGGCTCACTCCTGCCAC +
Preference number: 4 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVPLLLH*LAHSCH
Trigger: GTGGCAGGAGTGAGCCAGGCAATGCAGCAGAAGCGG...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GGCACTATGAAAATGAGAGTACTGCAGAAGACTAGAACTGGAAACACAGCACTGGCTTGCCGCTTCTGCTaGATTGCCTGGCTCACTCCT +
Preference number: 4 (lower is better)
Translates to: GTMKMRVLQKTRTGNTALACRFC*IAWLTP
Trigger: AGGAGTGAGCCAGGCAATGCAGCAGAAGCGGCAAGC...CAGTGCTGTGTTTCCAGTTCTAGTCTTCTGCAGTACTCTCATTTTCATAGTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGGGCATCGGGGAAGGGTaGTGCCATGGTGCTTTGGGT +
Preference number: 4 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVGIGEG*CHGALG
Trigger: ACCCAAAGCACCATGGCAGCACCCTTCCCCGATGCC...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GTCTGCTACCTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATGTCGTTCCACTGGCTaGCAGGACTGGCGACTGCAT +
Preference number: 4 (lower is better)
Translates to: VCYLQSLRNQALKTWSCQCRSTG*QDWRLH
Trigger: ATGCAGTCGCCAGTCCTGGCAGCCAGTGGAACGACA...TTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTGTACGAGTGGGGCATGGCATaGTGGCAGCTGCCTGCAGCG +
Preference number: 4 (lower is better)
Translates to: YISLNEDSAELTNLQPVYEWGMA*WQLPAA
Trigger: CGCTGCAGGCAGCTGCCACCATGCCATGCCCCACTC...GTACACTGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp CAAGGAATATTTCTGTCCCTGGGACAGGGTGTACTGGTCCTTCTGGGGGCTAGTGAACAAAAGAGTTGTTaGACTTCGATTCCTGCCAGG +
Preference number: 4 (lower is better)
Translates to: QGIFLSLGQGVLVLLGASEQKSC*TSIPAR
Trigger: CCTGGCAGGAATCGAAGTCCAACAACTCTTTTGTTC...ACTAGCCCCCAGAAGGACCAGTACACCCTGTCCCAGGGACAGAAATATTCCTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp GTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATGCAGGACTACTTATTTCTAGGTCCCTaGGGCTTCTGTCCCAAAACT +
Preference number: 4 (lower is better)
Translates to: VSFVLSLQASCLSHMQDYLFLGP*GFCPKT
Trigger: AGTTTTGGGACAGAAGCCCCAGGGACCTAGAAATAA...GTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp CAAGGAATATTTCTGTCCCTGGGACAGGGTGTACTGGTCCTTCTGGGGGCTAGTACTTTGGTCACGGTTTaGCCAGGTGTTATTTCTAGG +
Preference number: 4 (lower is better)
Translates to: QGIFLSLGQGVLVLLGASTLVTV*PGVISR
Trigger: CCTAGAAATAACACCTGGCCAAACCGTGACCAAAGT...ACTAGCCCCCAGAAGGACCAGTACACCCTGTCCCAGGGACAGAAATATTCCTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGTCACGTCCTCCACTGTaGTCAGGAGAGGTGGTGAGG +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQSRPPL*SGEVVR
Trigger: CCTCACCACCTCTCCTGACCACAGTGGAGGACGTGA...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp CAAGGAATATTTCTGTCCCTGGGACAGGGTGTACTGGTCCTTCTGGGGGCTAGTTTGGTTTTGTTATCCTaGTTCACGTCCTCCACTGTG +
Preference number: 4 (lower is better)
Translates to: QGIFLSLGQGVLVLLGASLVLLS*FTSSTV
Trigger: CACAGTGGAGGACGTGAACCAGGATAACAAAACCAA...ACTAGCCCCCAGAAGGACCAGTACACCCTGTCCCAGGGACAGAAATATTCCTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp GAGGTGCTTATTAAGCATGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCGCTGCCATGGTGCTTTaGGTGGCCACGTTTTGGTTT +
Preference number: 4 (lower is better)
Translates to: EVLIKHADCQHPLSVRNLAAMVL*VATFWF
Trigger: AAACCAAAACGTGGCCACCCAAAGCACCATGGCAGC...GAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCATGCTTAATAAGCACCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGAGGTGGGGGCTGTGGTaGTGTCTGAACATAGGTGAA +
Preference number: 4 (lower is better)
Translates to: RNLHLQLALRGLLPSKFERWGLW*CLNIGE
Trigger: TTCACCTATGTTCAGACACCACCACAGCCCCCACCT...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp GGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCAGACTGAATTCCTTCTaGTCTGTGAAGTTTGCAGCC +
Preference number: 4 (lower is better)
Translates to: GSSLQAEMSPPHSTNDNSRLNSF*SVKFAA
Trigger: GGCTGCAAACTTCACAGATCAGAAGGAATTCAGTCT...GCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR TCA 90 bp GGCACTATGAAAATGAGAGTACTGCAGAAGACTAGAACTGGAAACACAGCACTGTCAGCAAAGCAAGAGTaGGCCACCGGCTGGACTTTC +
Preference number: 4 (lower is better)
Translates to: GTMKMRVLQKTRTGNTALSAKQE*ATGWTF
Trigger: GAAAGTCCAGCCGGTGGCTCACTCTTGCTTTGCTGA...CAGTGCTGTGTTTCCAGTTCTAGTCTTCTGCAGTACTCTCATTTTCATAGTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR TCA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGTTTGGCCCTTTCCTCTaGACACCCAGCTGTGAAGAT +
Preference number: 4 (lower is better)
Translates to: RNLHLQLALRGLLPSKFEFGPFL*TPSCED
Trigger: ATCTTCACAGCTGGGTGTTCAGAGGAAAGGGCCAAA...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp GTGTCAGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTGGATTACTGGAATTCTaGGACGACTGTGAAGGGTCT +
Preference number: 4 (lower is better)
Translates to: VSEISIFSWLSGVCYLQSGLLEF*DDCEGS
Trigger: AGACCCTTCACAGTCGTCTCAGAATTCCAGTAATCC...ACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCTGACAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGAGGAGCCAATGGCAGTaGTGGCTGCTGTGGTTGCAT +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQRSQWQ*WLLWLH
Trigger: ATGCAACCACAGCAGCCATCACTGCCATTGGCTCCT...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGGGCTGTGATGGGTGCTaGGATGAGCCATGTACCCAT +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQGCDGC*DEPCTH
Trigger: ATGGGTACATGGCTCATCTCAGCACCCATCACAGCC...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp TATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTGTACGTCTCCCTGAGCTCCTaGCCAGCCGCTGTGCAAGCT +
Preference number: 4 (lower is better)
Translates to: YISLNEDSAELTNLQPVYVSLSS*PAAVQA
Trigger: AGCTTGCACAGCGGCTGGTCAGGAGCTCAGGGAGAC...GTACACTGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp TATTCCGAACCCACTGAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACGTGTCTGAACATAGGTaGAGGAGGTGGTATTGCAGT +
Preference number: 4 (lower is better)
Translates to: YSEPTEKDLHYRQKCHPHVSEHR*RRWYCS
Trigger: ACTGCAATACCACCTCCTTCACCTATGTTCAGACAC...GTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTCAGTGGGTTCGGAATA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp GCATCTTATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCATGGCATGGTGGCAGCTaGCTGCAGCGGTCAGACTGC +
Preference number: 4 (lower is better)
Translates to: ASYISLNEDSAELTNLQPWHGGS*LQRSDC
Trigger: GCAGTCTGACCGCTGCAGGCAGCTGCCACCATGCCA...TGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATAAGATGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp TACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCATCCATTACATGTTCCTaGACATCTTTGAGCTGCATG +
Preference number: 4 (lower is better)
Translates to: YRQKCHPHTARMTTAEASSITCS*TSLSCM
Trigger: CATGCAGCTCAAAGATGTGCAGGAACATGTAATGGA...TGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp CCAGTTTTGGAAGGTCACAACTATTCACATGATGTCCTGCTAATGCCGAGCAAGACCGGCTGGACTTTCTaGAAGGCGTGGGTCAAAAAC +
Preference number: 4 (lower is better)
Translates to: PVLEGHNYSHDVLLMPSKTGWTF*KAWVKN
Trigger: GTTTTTGACCCACGCCTTGCAGAAAGTCCAGCCGGT...CTTGCTCGGCATTAGCAGGACATCATGTGAATAGTTGTGACCTTCCAAAACTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp GGCACTATGAAAATGAGAGTACTGCAGAAGACTAGAACTGGAAACACAGCACTGCAGGTGTGTGGCCCATaGCAGACAGACTGCTGTTCT +
Preference number: 4 (lower is better)
Translates to: GTMKMRVLQKTRTGNTALQVCGP*QTDCCS
Trigger: AGAACAGCAGTCTGTCTGGCATGGGCCACACACCTG...CAGTGCTGTGTTTCCAGTTCTAGTCTTCTGCAGTACTCTCATTTTCATAGTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp ACTTGGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGAGCTCTTTTAGCTGGTaGTCAGGAATTGCTGCACTT +
Preference number: 4 (lower is better)
Translates to: TWSCQSPQTQGIFLSLGQSSFSW*SGIAAL
Trigger: AAGTGCAGCAATTCCTGAGCACCAGCTAAAAGAGCT...CTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCCAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGGAGCTTCCGCCTCACTaGAGCAGCCCTGCAAACTTG +
Preference number: 4 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVELPPH*SSPANL
Trigger: CAAGTTTGCAGGGCTGCTGCAGTGAGGCGGAAGCTC...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGTGGCCGAACAGCAGCTaGACAGCAGTCTTACAGGCA +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQWPNSS*TAVLQA
Trigger: TGCCTGTAAGACTGCTGTGCAGCTGCTGTTCGGCCA...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GTCTGCTACCTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATGGCCGAACAGCAGCTaGACAGCAGTCTTACAGGCA +
Preference number: 4 (lower is better)
Translates to: VCYLQSLRNQALKTWSCQWPNSS*TAVLQA
Trigger: TGCCTGTAAGACTGCTGTGCAGCTGCTGTTCGGCCA...TTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGGGATCCAGGCTCCTCTaGAGCAGGGACATGGTAGCA +
Preference number: 4 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVGSRLL*SRDMVA
Trigger: TGCTACCATGTCCCTGCTGCAGAGGAGCCTGGATCC...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp ACTTGGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGTCGCAGATATCCCTTTaGAGCTGGATCTGTATACAG +
Preference number: 4 (lower is better)
Translates to: TWSCQSPQTQGIFLSLGQSQISL*SWICIQ
Trigger: CTGTATACAGATCCAGCTGCAAAGGGATATCTGCGA...CTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCCAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GGCACTATGAAAATGAGAGTACTGCAGAAGACTAGAACTGGAAACACAGCACTGCTTGAAGCCCTTGGGTaGTGCCTTATGTGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: GTMKMRVLQKTRTGNTALLEALG*CLMCWW
Trigger: CCACCAGCACATAAGGCAGCACCCAAGGGCTTCAAG...CAGTGCTGTGTTTCCAGTTCTAGTCTTCTGCAGTACTCTCATTTTCATAGTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp TACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAGCAAACTTGCTTCAATaGCCTTTGGGTTTAGATGGA +
Preference number: 4 (lower is better)
Translates to: YRQKCHPHTARMTTAEASANLLQ*PLGLDG
Trigger: TCCATCTAAACCCAAAGGCCATTGAAGCAAGTTTGC...TGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGTCTGCACAGGAACCGTaGGGAGCTCACACTGCATGG +
Preference number: 4 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVSAQEP*GAHTAW
Trigger: CCATGCAGTGTGAGCTCCCCACGGTTCCTGTGCAGA...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp ACTTGGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGACTTTGGTCACGGTTTaGCCAGGTGTTATTTCTAGG +
Preference number: 4 (lower is better)
Translates to: TWSCQSPQTQGIFLSLGQTLVTV*PGVISR
Trigger: CCTAGAAATAACACCTGGCCAAACCGTGACCAAAGT...CTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCCAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCCATCTTCAGCTGGCTCTACTTTGGTCACGGTTTaGCCAGGTGTTATTTCTAGG +
Preference number: 4 (lower is better)
Translates to: CRLPASPECQKSPSSAGSTLVTV*PGVISR
Trigger: CCTAGAAATAACACCTGGCCAAACCGTGACCAAAGT...AGAGCCAGCTGAAGATGGAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp GAGGTGCTTATTAAGCATGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCAAGACTCCATCACTTTaGTCACGGTTTGGCCAGGTG +
Preference number: 4 (lower is better)
Translates to: EVLIKHADCQHPLSVRNLKTPSL*SRFGQV
Trigger: CACCTGGCCAAACCGTGACCAAAGTGATGGAGTCTT...GAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCATGCTTAATAAGCACCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGAAGACTCCATCACTTTaGTCACGGTTTGGCCAGGTG +
Preference number: 4 (lower is better)
Translates to: RNLHLQLALRGLLPSKFEKTPSL*SRFGQV
Trigger: CACCTGGCCAAACCGTGACCAAAGTGATGGAGTCTT...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTGTACGATGAGCGTCTTCCATaGGCGGCCAGTTGCCACGGG +
Preference number: 4 (lower is better)
Translates to: YISLNEDSAELTNLQPVYDERLP*AASCHG
Trigger: CCCGTGGCAACTGGCCGCCCATGGAAGACGCTCATC...GTACACTGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR CAA 72 bp TTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTaGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAA +
Preference number: 4 (lower is better)
Translates to: FSWLSGVCYLQS*RNQALKTWSCQ
Trigger: TTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp CCAGTTTTGGAAGGTCACAACTATTCACATGATGTCCTGCTAATGCCGAGCAAGATTCCTTCTGATCTGTaGAGTTTGCAGCCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: PVLEGHNYSHDVLLMPSKIPSDL*SLQPQH
Trigger: GTGCTGGGGCTGCAAACTTCACAGATCAGAAGGAAT...CTTGCTCGGCATTAGCAGGACATCATGTGAATAGTTGTGACCTTCCAAAACTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR TCA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGCATGTGGATGGGACTTaGACCACAATTCTGGAACCT +
Preference number: 4 (lower is better)
Translates to: RNLHLQLALRGLLPSKFEHVDGT*TTILEP
Trigger: AGGTTCCAGAATTGTGGTTCAAGTCCCATCCACATG...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp CCAGTTTTGGAAGGTCACAACTATTCACATGATGTCCTGCTAATGCCGAGCAAGGAAGGCAGGTCAGCCTaGTTCCCAAAATCGCAGATA +
Preference number: 4 (lower is better)
Translates to: PVLEGHNYSHDVLLMPSKEGRSA*FPKSQI
Trigger: TATCTGCGATTTTGGGAATCAGGCTGACCTGCCTTC...CTTGCTCGGCATTAGCAGGACATCATGTGAATAGTTGTGACCTTCCAAAACTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR TCA 90 bp GAGGTGCTTATTAAGCATGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCAACAAGGTCAGGCCCTaGAAACATGGAGAACAGACT +
Preference number: 4 (lower is better)
Translates to: EVLIKHADCQHPLSVRNLNKVRP*KHGEQT
Trigger: AGTCTGTTCTCCATGTTTTCAGGGCCTGACCTTGTT...GAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCATGCTTAATAAGCACCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCCATCTTCAGCTGGCTCTTCCATTACATGTTCCTaGACATCTTTGAGCTGCATG +
Preference number: 4 (lower is better)
Translates to: CRLPASPECQKSPSSAGSSITCS*TSLSCM
Trigger: CATGCAGCTCAAAGATGTGCAGGAACATGTAATGGA...AGAGCCAGCTGAAGATGGAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp GGCACTATGAAAATGAGAGTACTGCAGAAGACTAGAACTGGAAACACAGCACTGTTGGACTTCGATTCCTaGCAGGCATCCATCACAGCC +
Preference number: 4 (lower is better)
Translates to: GTMKMRVLQKTRTGNTALLDFDS*QASITA
Trigger: GGCTGTGATGGATGCCTGGCAGGAATCGAAGTCCAA...CAGTGCTGTGTTTCCAGTTCTAGTCTTCTGCAGTACTCTCATTTTCATAGTGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGTTGGACTTCGATTCCTaGCAGGCATCCATCACAGCC +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQLDFDS*QASITA
Trigger: GGCTGTGATGGATGCCTGGCAGGAATCGAAGTCCAA...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GTCTGCTACCTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAAACCCCCTTCAGGAAGTaGGATCCTATCTGCACAGGA +
Preference number: 4 (lower is better)
Translates to: VCYLQSLRNQALKTWSCQTPFRK*DPICTG
Trigger: TCCTGTGCAGATAGGATCGCACTTCCTGAAGGGGGT...TTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CCAGTTTTGGAAGGTCACAACTATTCACATGATGTCCTGCTAATGCCGAGCAAGAATGGCAGTGATGGCTaGTGTGGTTGCATGGTTCCT +
Preference number: 4 (lower is better)
Translates to: PVLEGHNYSHDVLLMPSKNGSDG*CGCMVP
Trigger: AGGAACCATGCAACCACAGCAGCCATCACTGCCATT...CTTGCTCGGCATTAGCAGGACATCATGTGAATAGTTGTGACCTTCCAAAACTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp TATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTGTACGTGGTGAGGGCAGTGTaGTGGTCTCCTGCTCTCCAC +
Preference number: 4 (lower is better)
Translates to: YISLNEDSAELTNLQPVYVVRAV*WSPALH
Trigger: GTGGAGAGCAGGAGACCAGCACACTGCCCTCACCAC...GTACACTGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGAGGGTGCTGCCATGGTaGTTTGGGTGGCCACGTTTT +
Preference number: 4 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVRVLPW*FGWPRF
Trigger: AAAACGTGGCCACCCAAAGCACCATGGCAGCACCCT...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GCATCTTATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGCCAGGACTGGCGACTaGATAGAGTGGTGCAGCTGG +
Preference number: 4 (lower is better)
Translates to: ASYISLNEDSAELTNLQPARTGD*IEWCSW
Trigger: CCAGCTGCACCACTCTATGCAGTCGCCAGTCCTGGC...TGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATAAGATGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp GGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCGTCAAAAACTGGAAATaGACTTGCACCACTGTCAAG +
Preference number: 4 (lower is better)
Translates to: GSSLQAEMSPPHSTNDNSVKNWK*TCTTVK
Trigger: CTTGACAGTGGTGCAAGTCCATTTCCAGTTTTTGAC...GCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp GTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATGCAGGACTACATTGCATATTCACAGTaGCCTAAGCTTTCCAAAGCT +
Preference number: 4 (lower is better)
Translates to: VSFVLSLQASCLSHMQDYIAYSQ*PKLSKA
Trigger: AGCTTTGGAAAGCTTAGGCCACTGTGAATATGCAAT...GTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TGCTTGGCCGTGCTGAGGACACACTCACACGCATACATGCGCTTTGGCAAGACAAAAGCCATTGACCATTaGATTACTGGAATTCTGAGA +
Preference number: 4 (lower is better)
Translates to: CLAVLRTHSHAYMRFGKTKAIDH*ITGILR
Trigger: TCTCAGAATTCCAGTAATCCAATGGTCAATGGCTTT...TGTCTTGCCAAAGCGCATGTATGCGTGTGAGTGTGTCCTCAGCACGGCCAAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR TCA 90 bp GTCTGCTACCTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATTTGGCCCTTTCCTCTaGACACCCAGCTGTGAAGAT +
Preference number: 4 (lower is better)
Translates to: VCYLQSLRNQALKTWSCQFGPFL*TPSCED
Trigger: ATCTTCACAGCTGGGTGTTCAGAGGAAAGGGCCAAA...TTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGATTCTGAGACGACTGTaGAGGGTCTGTAGTCCTAGG +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQILRRL*RVCSPR
Trigger: CCTAGGACTACAGACCCTTCACAGTCGTCTCAGAAT...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp TATTCCGAACCCACTGAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACGCCCATGTTAAAGCCTaGGAGAAAATCTATCACTTC +
Preference number: 4 (lower is better)
Translates to: YSEPTEKDLHYRQKCHPHAHVKA*EKIYHF
Trigger: GAAGTGATAGATTTTCTCTCAGGCTTTAACATGGGC...GTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTCAGTGGGTTCGGAATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR TCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGTGTACAAGTCAGAGCTaGGATCAGATATGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQCTSQS*DQICQA
Trigger: GGCCTGGCATATCTGATCTCAGCTCTGACTTGTACA...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GCATCTTATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGGGTACTGCTGGTGCTaGTGCACCTTCTGCTTGGAC +
Preference number: 4 (lower is better)
Translates to: ASYISLNEDSAELTNLQPGYCWC*CTFCLD
Trigger: GTCCAAGCAGAAGGTGCAGCAGCACCAGCAGTACCC...TGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATAAGATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp GGCACTATGAAAATGAGAGTACTGCAGAAGACTAGAACTGGAAACACAGCACTGCTGATCTGTGAAGTTTaGAGCCCCAGCACTGAGTTC +
Preference number: 4 (lower is better)
Translates to: GTMKMRVLQKTRTGNTALLICEV*SPSTEF
Trigger: GAACTCAGTGCTGGGGCTGCAAACTTCACAGATCAG...CAGTGCTGTGTTTCCAGTTCTAGTCTTCTGCAGTACTCTCATTTTCATAGTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp TATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTGTACGAGCTTCCGCCTCACTaGAGCAGCCCTGCAAACTTG +
Preference number: 4 (lower is better)
Translates to: YISLNEDSAELTNLQPVYELPPH*SSPANL
Trigger: CAAGTTTGCAGGGCTGCTGCAGTGAGGCGGAAGCTC...GTACACTGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCAAGACTGATCTGGGGTaGATAGGCTTCTTTATTTTC +
Preference number: 4 (lower is better)
Translates to: GSSLQAEMSPPHSTNDNSKTDLG*IGFFIF
Trigger: GAAAATAAAGAAGCCTATGCACCCCAGATCAGTCTT...GCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp TATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTGTACGAAGCCCTTGGGTGCTaGCTTATGTGCTGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: YISLNEDSAELTNLQPVYEALGC*LMCWWR
Trigger: CCTCCACCAGCACATAAGGCAGCACCCAAGGGCTTC...GTACACTGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGCTGAGGTCAATCTGCTaGCTGCTTCCATTACATGTT +
Preference number: 4 (lower is better)
Translates to: RNLHLQLALRGLLPSKFELRSIC*LLPLHV
Trigger: AACATGTAATGGAAGCAGCCAGCAGATTGACCTCAG...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp TATTCCGAACCCACTGAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACGCAAACTTGCTTCAATaGCCTTTGGGTTTAGATGGA +
Preference number: 4 (lower is better)
Translates to: YSEPTEKDLHYRQKCHPHANLLQ*PLGLDG
Trigger: TCCATCTAAACCCAAAGGCCATTGAAGCAAGTTTGC...GTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTCAGTGGGTTCGGAATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp GGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCATATCCCTTTGCAGCTaGATCTGTATACAGGGTAAA +
Preference number: 4 (lower is better)
Translates to: GSSLQAEMSPPHSTNDNSISLCS*ICIQGK
Trigger: TTTACCCTGTATACAGATCCAGCTGCAAAGGGATAT...GCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGTTGGTTTTGTTATCCTaGTTCACGTCCTCCACTGTG +
Preference number: 4 (lower is better)
Translates to: RNLHLQLALRGLLPSKFELVLLS*FTSSTV
Trigger: CACAGTGGAGGACGTGAACCAGGATAACAAAACCAA...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGTGGGTGGCCACGTTTTaGTTTTGTTATCCTGGTTCA +
Preference number: 4 (lower is better)
Translates to: RNLHLQLALRGLLPSKFEWVATF*FCYPGS
Trigger: TGAACCAGGATAACAAAACCAAAACGTGGCCACCCA...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGCTGAACACCCAGCTGTaGAGATGTTTTTGGAATAGT +
Preference number: 4 (lower is better)
Translates to: RNLHLQLALRGLLPSKFELNTQL*RCFWNS
Trigger: ACTATTCCAAAAACATCTTCACAGCTGGGTGTTCAG...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGTGTACAAGTCAGAGCTaGGATCAGATATGCCAGGCC +
Preference number: 4 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVCTSQS*DQICQA
Trigger: GGCCTGGCATATCTGATCTCAGCTCTGACTTGTACA...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp GGCACTATGAAAATGAGAGTACTGCAGAAGACTAGAACTGGAAACACAGCACTGAACAAGGTCAGGCCCTaGAAACATGGAGAACAGACT +
Preference number: 4 (lower is better)
Translates to: GTMKMRVLQKTRTGNTALNKVRP*KHGEQT
Trigger: AGTCTGTTCTCCATGTTTTCAGGGCCTGACCTTGTT...CAGTGCTGTGTTTCCAGTTCTAGTCTTCTGCAGTACTCTCATTTTCATAGTGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR TCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGAACAAGGTCAGGCCCTaGAAACATGGAGAACAGACT +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQNKVRP*KHGEQT
Trigger: AGTCTGTTCTCCATGTTTTCAGGGCCTGACCTTGTT...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGTGGCTGAGGTCAATCTaGTGGCTGCTTCCATTACAT +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQWLRSI*WLLPLH
Trigger: ATGTAATGGAAGCAGCCAGCAGATTGACCTCAGCCA...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR GCA 90 bp GTCTGCTACCTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCTCCTGCTCTCCACTaGTGTGTTTCCTTCTCTGTT +
Preference number: 4 (lower is better)
Translates to: VCYLQSLRNQALKTWSCQSPALH*CVSFSV
Trigger: AACAGAGAAGGAAACACAGCAGTGGAGAGCAGGAGA...TTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGTCTCCTGCTCTCCACTaGTGTGTTTCCTTCTCTGTT +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQSPALH*CVSFSV
Trigger: AACAGAGAAGGAAACACAGCAGTGGAGAGCAGGAGA...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGTTTAGCTCTTTTAGCTaGTGCTCAGGAATTGCTGCA +
Preference number: 4 (lower is better)
Translates to: RNLHLQLALRGLLPSKFEFSSFS*CSGIAA
Trigger: TGCAGCAATTCCTGAGCACCAGCTAAAAGAGCTAAA...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGACCGGGATGTCAGTTTaGAGAAAGTCTTCTGCAGTC +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQTGMSV*RKSSAV
Trigger: GACTGCAGAAGACTTTCTCCAAACTGACATCCCGGT...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp GTCTGCTACCTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAAACCGGGATGTCAGTTTaGAGAAAGTCTTCTGCAGTC +
Preference number: 4 (lower is better)
Translates to: VCYLQSLRNQALKTWSCQTGMSV*RKSSAV
Trigger: GACTGCAGAAGACTTTCTCCAAACTGACATCCCGGT...TTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGGGATTACTGGAATTCTaGGACGACTGTGAAGGGTCT +
Preference number: 4 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVGLLEF*DDCEGS
Trigger: AGACCCTTCACAGTCGTCTCAGAATTCCAGTAATCC...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGCCAGGAGAAAGCCATTaGCCATTGGATTACTGGAAT +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQPGESH*PLDYWN
Trigger: ATTCCAGTAATCCAATGGTCAATGGCTTTCTCCTGG...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp GTCTGCTACCTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAACCAGGAGAAAGCCATTaGCCATTGGATTACTGGAAT +
Preference number: 4 (lower is better)
Translates to: VCYLQSLRNQALKTWSCQPGESH*PLDYWN
Trigger: ATTCCAGTAATCCAATGGTCAATGGCTTTCTCCTGG...TTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGACTTCCTGCATTTCCTaGTCAGTGGGTAAGTTCATG +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQTSCIS*SVGKFM
Trigger: CATGAACTTACCCACTGATCAGGAAATGCAGGAAGT...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp GCATCTTATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAACTGTCCCCATTGGCTaGAGAGGTCTCATCACTGGA +
Preference number: 4 (lower is better)
Translates to: ASYISLNEDSAELTNLQPTVPIG*RGLITG
Trigger: TCCAGTGATGAGACCTCTTCAGCCAATGGGGACAGT...TGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATAAGATGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp TATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTGTACACTGTCCCCATTGGCTaGAGAGGTCTCATCACTGGA +
Preference number: 4 (lower is better)
Translates to: YISLNEDSAELTNLQPVYTVPIG*RGLITG
Trigger: TCCAGTGATGAGACCTCTTCAGCCAATGGGGACAGT...GTACACTGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GCATCTTATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAACCCCCTTCAGGAAGTaGGATCCTATCTGCACAGGA +
Preference number: 4 (lower is better)
Translates to: ASYISLNEDSAELTNLQPTPFRK*DPICTG
Trigger: TCCTGTGCAGATAGGATCGCACTTCCTGAAGGGGGT...TGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATAAGATGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCGTGTATCAATATTATTaGCCATCATTTTGGCCCTTT +
Preference number: 4 (lower is better)
Translates to: GSSLQAEMSPPHSTNDNSVYQYY*PSFWPF
Trigger: AAAGGGCCAAAATGATGGGCAATAATATTGATACAC...GCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp GTGTCAGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTAAAGCCATTGACCATTaGATTACTGGAATTCTGAGA +
Preference number: 4 (lower is better)
Translates to: VSEISIFSWLSGVCYLQSKAIDH*ITGILR
Trigger: TCTCAGAATTCCAGTAATCCAATGGTCAATGGCTTT...ACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCTGACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTGTACGCTGCCATGGTGCTTTaGGTGGCCACGTTTTGGTTT +
Preference number: 4 (lower is better)
Translates to: YISLNEDSAELTNLQPVYAAMVL*VATFWF
Trigger: AAACCAAAACGTGGCCACCCAAAGCACCATGGCAGC...GTACACTGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
3UTR CAA 72 bp TTCAGAGGAGCTACTGACCCATGGGAAGCCAGGTGGTaGCTTCTGATCACTAGCATCTTATATAAGCTTAAA +
Preference number: 4 (lower is better)
Translates to: FRGATDPWEARW*LLITSILYKLK
Trigger: TTTAAGCTTATATAAGATGCTAGTGATCAGAAGCAACCACCTGGCTTCCCATGGGTCAGTAGCTCCTCTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGATGACACTTTCTTTGTaGACCGGGATGTCAGTTTGG +
Preference number: 4 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVMTLSL*TGMSVW
Trigger: CCAAACTGACATCCCGGTTCACAAAGAAAGTGTCAT...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp GGCACTATGAAAATGAGAGTACTGCAGAAGACTAGAACTGGAAACACAGCACTGCTGAACACCCAGCTGTaGAGATGTTTTTGGAATAGT +
Preference number: 4 (lower is better)
Translates to: GTMKMRVLQKTRTGNTALLNTQL*RCFWNS
Trigger: ACTATTCCAAAAACATCTTCACAGCTGGGTGTTCAG...CAGTGCTGTGTTTCCAGTTCTAGTCTTCTGCAGTACTCTCATTTTCATAGTGCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR TCA 90 bp GCATCTTATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCATTTGGCCCTTTCCTCTaGACACCCAGCTGTGAAGAT +
Preference number: 4 (lower is better)
Translates to: ASYISLNEDSAELTNLQPFGPFL*TPSCED
Trigger: ATCTTCACAGCTGGGTGTTCAGAGGAAAGGGCCAAA...TGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATAAGATGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGTTTTGGAATAGTGTGTaGTGCCAGAGTTGGTGCATG +
Preference number: 4 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVFWNSV*CQSWCM
Trigger: CATGCACCAACTCTGGCAGCACACACTATTCCAAAA...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GCATCTTATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAAATGGCAGTGATGGCTaGTGTGGTTGCATGGTTCCT +
Preference number: 4 (lower is better)
Translates to: ASYISLNEDSAELTNLQPNGSDG*CGCMVP
Trigger: AGGAACCATGCAACCACAGCAGCCATCACTGCCATT...TGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATAAGATGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGTTTAGCTCTTTTAGCTaGTGCTCAGGAATTGCTGCA +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQFSSFS*CSGIAA
Trigger: TGCAGCAATTCCTGAGCACCAGCTAAAAGAGCTAAA...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp GTCTGCTACCTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAAGCAAACTTGCTTCAATaGCCTTTGGGTTTAGATGGA +
Preference number: 4 (lower is better)
Translates to: VCYLQSLRNQALKTWSCQANLLQ*PLGLDG
Trigger: TCCATCTAAACCCAAAGGCCATTGAAGCAAGTTTGC...TTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGAAAGCCATTGACCATTaGATTACTGGAATTCTGAGA +
Preference number: 4 (lower is better)
Translates to: RNLHLQLALRGLLPSKFEKAIDH*ITGILR
Trigger: TCTCAGAATTCCAGTAATCCAATGGTCAATGGCTTT...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTGTACACAGACTGTCCCCATTaGCTGAAGAGGTCTCATCAC +
Preference number: 4 (lower is better)
Translates to: YISLNEDSAELTNLQPVYTDCPH*LKRSHH
Trigger: GTGATGAGACCTCTTCAGCCAATGGGGACAGTCTGT...GTACACTGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp TATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTGTACCATGTGGATGGGACTTaGACCACAATTCTGGAACCT +
Preference number: 4 (lower is better)
Translates to: YISLNEDSAELTNLQPVYHVDGT*TTILEP
Trigger: AGGTTCCAGAATTGTGGTTCAAGTCCCATCCACATG...GTACACTGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GTCTGCTACCTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAAAGCTGTAACATGGTATaGGTCTTAAGCTTCAGATTG +
Preference number: 4 (lower is better)
Translates to: VCYLQSLRNQALKTWSCQSCNMV*VLSFRL
Trigger: CAATCTGAAGCTTAAGACGCATACCATGTTACAGCT...TTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGAGCTGTAACATGGTATaGGTCTTAAGCTTCAGATTG +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQSCNMV*VLSFRL
Trigger: CAATCTGAAGCTTAAGACGCATACCATGTTACAGCT...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGAAGACTGATCTGGGGTaGATAGGCTTCTTTATTTTC +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQKTDLG*IGFFIF
Trigger: GAAAATAAAGAAGCCTATGCACCCCAGATCAGTCTT...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGGTGTATCAATATTATTaGCCATCATTTTGGCCCTTT +
Preference number: 4 (lower is better)
Translates to: RNLHLQLALRGLLPSKFEVYQYY*PSFWPF
Trigger: AAAGGGCCAAAATGATGGGCAATAATATTGATACAC...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTGTACGCGTGGGTCAAAAACTaGAAATGGACTTGCACCACT +
Preference number: 4 (lower is better)
Translates to: YISLNEDSAELTNLQPVYAWVKN*KWTCTT
Trigger: AGTGGTGCAAGTCCATTTCCAGTTTTTGACCCACGC...GTACACTGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGATTGCATATTCACAGTaGCCTAAGCTTTCCAAAGCT +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQIAYSQ*PKLSKA
Trigger: AGCTTTGGAAAGCTTAGGCCACTGTGAATATGCAAT...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGATATCCCTTTGCAGCTaGATCTGTATACAGGGTAAA +
Preference number: 4 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQISLCS*ICIQGK
Trigger: TTTACCCTGTATACAGATCCAGCTGCAAAGGGATAT...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGAAGACTGATCTGGGGTaGATAGGCTTCTTTATTTTC +
Preference number: 4 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVKTDLG*IGFFIF
Trigger: GAAAATAAAGAAGCCTATGCACCCCAGATCAGTCTT...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp TATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTGTACTTATTTCTAGGTCCCTaGGGCTTCTGTCCCAAAACT +
Preference number: 4 (lower is better)
Translates to: YISLNEDSAELTNLQPVYLFLGP*GFCPKT
Trigger: AGTTTTGGGACAGAAGCCCCAGGGACCTAGAAATAA...GTACACTGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp GCATCTTATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCATGGGTGGCCACGTTTTaGTTTTGTTATCCTGGTTCA +
Preference number: 4 (lower is better)
Translates to: ASYISLNEDSAELTNLQPWVATF*FCYPGS
Trigger: TGAACCAGGATAACAAAACCAAAACGTGGCCACCCA...TGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATAAGATGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR TCA 90 bp TATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTGTACGCCCATGTTAAAGCCTaGGAGAAAATCTATCACTTC +
Preference number: 4 (lower is better)
Translates to: YISLNEDSAELTNLQPVYAHVKA*EKIYHF
Trigger: GAAGTGATAGATTTTCTCTCAGGCTTTAACATGGGC...GTACACTGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GTCTGCTACCTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAAGTGTATCAATATTATTaGCCATCATTTTGGCCCTTT +
Preference number: 4 (lower is better)
Translates to: VCYLQSLRNQALKTWSCQVYQYY*PSFWPF
Trigger: AAAGGGCCAAAATGATGGGCAATAATATTGATACAC...TTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp GTCTGCTACCTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATACCAATGTTCAAAATaGTCTGTAACCGTGTATCAA +
Preference number: 4 (lower is better)
Translates to: VCYLQSLRNQALKTWSCQYQCSK*SVTVYQ
Trigger: TTGATACACGGTTACAGAGCATTTTGAACATTGGTA...TTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTGTACTATTGTCCATATAGCTaGTCACTAGACCCAAGCTGT +
Preference number: 4 (lower is better)
Translates to: YISLNEDSAELTNLQPVYYCPYS*SLDPSC
Trigger: ACAGCTTGGGTCTAGTGAGCAGCTATATGGACAATA...GTACACTGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGTACCAATGTTCAAAATaGTCTGTAACCGTGTATCAA +
Preference number: 4 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVYQCSK*SVTVYQ
Trigger: TTGATACACGGTTACAGAGCATTTTGAACATTGGTA...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CCA 90 bp GCATCTTATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAATATCCCTTTGCAGCTaGATCTGTATACAGGGTAAA +
Preference number: 4 (lower is better)
Translates to: ASYISLNEDSAELTNLQPISLCS*ICIQGK
Trigger: TTTACCCTGTATACAGATCCAGCTGCAAAGGGATAT...TGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATAAGATGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR GCA 90 bp TATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTGTACTACCAATGTTCAAAATaGTCTGTAACCGTGTATCAA +
Preference number: 4 (lower is better)
Translates to: YISLNEDSAELTNLQPVYYQCSK*SVTVYQ
Trigger: TTGATACACGGTTACAGAGCATTTTGAACATTGGTA...GTACACTGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS GCA 90 bp GGAGCGCTCAGTGCTCGGCCCAGCTCAGGCATCGGGTACTGCTGGTaGTGCTGCACCTTCTGCTTGGACCCGCCAAGCAGGAAGCGCCGC +
Preference number: 5 (lower is better)
Translates to: GALSARPSSGIGYCW*CCTFCLDPPSRKRR
Trigger: GCGGCGCTTCCTGCTTGGCGGGTCCAAGCAGAAGGTGCAGCAGCACCAGCAGTACCCGATGCCTGAGCTGGGCCGAGCACTGAGCGCTCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS GCA 90 bp CTGGCAAAGGCCAGGTCCGATGAGCGTCTTCCATGGGCGGCCAGTTaGCACGGGGGTTGCCTGGCCGGCGGCCATGTTGAGCTTGCCGCT +
Preference number: 5 (lower is better)
Translates to: LAKARSDERLPWAAS*HGGCLAGGHVELAA
Trigger: AGCGGCAAGCTCAACATGGCCGCCGGCCAGGCAACCCCCGTGGCAACTGGCCGCCCATGGAAGACGCTCATCGGACCTGGCCTTTGCCAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp CTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCTCCATGGGCGGCCAGTaGCCACGGGGGTTGCCTGGC +
Preference number: 5 (lower is better)
Translates to: LPSTVPSVEERGAGAALVSMGGQ*PRGLPG
Trigger: GCCAGGCAACCCCCGTGGCAACTGGCCGCCCATGGA...GACCAGGGCAGCACCAGCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 90 bp ATGGGCGGCCAGTTGCCACGGGGGTTGCCTGGCCGGCGGCCATGTTaGGCTTGCCGCTTCTGCTGCATTGCCTGGCTCACTCCTGCCACA +
Preference number: 5 (lower is better)
Translates to: MGGQLPRGLPGRRPC*ACRFCCIAWLTPAT
Trigger: TGTGGCAGGAGTGAGCCAGGCAATGCAGCAGAAGCGGCAAGCTCAACATGGCCGCCGGCCAGGCAACCCCCGTGGCAACTGGCCGCCCAT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS GCA 90 bp CAGGACTGGCGACTGCATAGAGTGGTGCAGCTGGGCTGGGCAGCGTaGTGGGCATCGGGGAAGGGTGCTGCCATGGTGCTTTGGGTGGCC +
Preference number: 5 (lower is better)
Translates to: QDWRLHRVVQLGWAA*WASGKGAAMVLWVA
Trigger: GGCCACCCAAAGCACCATGGCAGCACCCTTCCCCGATGCCCAGCACGCTGCCCAGCCCAGCTGCACCACTCTATGCAGTCGCCAGTCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS CCA 90 bp CCGATGAGCGTCTTCCATGGGCGGCCAGTTGCCACGGGGGTTGCCTaGCCGGCGGCCATGTTGAGCTTGCCGCTTCTGCTGCATTGCCTG +
Preference number: 5 (lower is better)
Translates to: PMSVFHGRPVATGVA*PAAMLSLPLLLHCL
Trigger: CAGGCAATGCAGCAGAAGCGGCAAGCTCAACATGGCCGCCGGCCAGGCAACCCCCGTGGCAACTGGCCGCCCATGGAAGACGCTCATCGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS CCA 90 bp GTTCCACTGGCTGCCAGGACTGGCGACTGCATAGAGTGGTGCAGCTaGGCTGGGCAGCGTGCTGGGCATCGGGGAAGGGTGCTGCCATGG +
Preference number: 5 (lower is better)
Translates to: VPLAARTGDCIEWCS*AGQRAGHRGRVLPW
Trigger: CCATGGCAGCACCCTTCCCCGATGCCCAGCACGCTGCCCAGCCCAGCTGCACCACTCTATGCAGTCGCCAGTCCTGGCAGCCAGTGGAAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS GCA 90 bp AGGTCCGATGAGCGTCTTCCATGGGCGGCCAGTTGCCACGGGGGTTaGCTGGCCGGCGGCCATGTTGAGCTTGCCGCTTCTGCTGCATTG +
Preference number: 5 (lower is better)
Translates to: RSDERLPWAASCHGG*LAGGHVELAASAAL
Trigger: CAATGCAGCAGAAGCGGCAAGCTCAACATGGCCGCCGGCCAGGCAACCCCCGTGGCAACTGGCCGCCCATGGAAGACGCTCATCGGACCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS GCA 90 bp CAGCATCTGCACGGTGTCGTTCCACTGGCTGCCAGGACTGGCGACTaGATAGAGTGGTGCAGCTGGGCTGGGCAGCGTGCTGGGCATCGG +
Preference number: 5 (lower is better)
Translates to: QHLHGVVPLAARTGD*IEWCSWAGQRAGHR
Trigger: CCGATGCCCAGCACGCTGCCCAGCCCAGCTGCACCACTCTATGCAGTCGCCAGTCCTGGCAGCCAGTGGAACGACACCGTGCAGATGCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CCA 90 bp GGAGCCAGACCTTGCTGGGCTGCCAGAGGCGTGTGTGCTCCAGCCTaGGGTGGCCGTAGTGGAGGAGCCAATGGCAGTGATGGCTGCTGT +
Preference number: 5 (lower is better)
Translates to: GARPCWAARGVCAPA*GGRSGGANGSDGCC
Trigger: ACAGCAGCCATCACTGCCATTGGCTCCTCCACTACGGCCACCCCAGGCTGGAGCACACACGCCTCTGGCAGCCCAGCAAGGTCTGGCTCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CCA 90 bp GGGACTGCAGCATCTGCACGGTGTCGTTCCACTGGCTGCCAGGACTaGCGACTGCATAGAGTGGTGCAGCTGGGCTGGGCAGCGTGCTGG +
Preference number: 5 (lower is better)
Translates to: GTAASARCRSTGCQD*RLHRVVQLGWAACW
Trigger: CCAGCACGCTGCCCAGCCCAGCTGCACCACTCTATGCAGTCGCCAGTCCTGGCAGCCAGTGGAACGACACCGTGCAGATGCTGCAGTCCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp TGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCTCAGTTGCCACGGGGGTaGCCTGGCCGGCGGCCATGT +
Preference number: 5 (lower is better)
Translates to: CTPWEARICLTAVAQSRSQLPRG*PGRRPC
Trigger: ACATGGCCGCCGGCCAGGCAACCCCCGTGGCAACTG...AGAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS GCA 90 bp CCCACACAGGGGACTGCAGCATCTGCACGGTGTCGTTCCACTGGCTaGCAGGACTGGCGACTGCATAGAGTGGTGCAGCTGGGCTGGGCA +
Preference number: 5 (lower is better)
Translates to: PTQGTAASARCRSTG*QDWRLHRVVQLGWA
Trigger: TGCCCAGCCCAGCTGCACCACTCTATGCAGTCGCCAGTCCTGGCAGCCAGTGGAACGACACCGTGCAGATGCTGCAGTCCCCTGTGTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CCA 90 bp ATGCCCTGCTGGATGTCAGCAATGGGAGTAGAGTGGGGCATGGCATaGTGGCAGCTGCCTGCAGCGGTCAGACTGCCCAGCGGGGCAGAG +
Preference number: 5 (lower is better)
Translates to: MPCWMSAMGVEWGMA*WQLPAAVRLPSGAE
Trigger: CTCTGCCCCGCTGGGCAGTCTGACCGCTGCAGGCAGCTGCCACCATGCCATGCCCCACTCTACTCCCATTGCTGACATCCAGCAGGGCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CAA 90 bp CTGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCTGGCCGGCGGCCATGTaGAGCTTGCCGCTTCTGCTG +
Preference number: 5 (lower is better)
Translates to: LHPLGGQNMPDSSCPIPLWPAAM*SLPLLL
Trigger: CAGCAGAAGCGGCAAGCTCAACATGGCCGCCGGCCA...GAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 90 bp AAGCTGTCCCCTTCTGTGAAGAACTCTGGCAAAGGCCAGGTCCGATaGGCGTCTTCCATGGGCGGCCAGTTGCCACGGGGGTTGCCTGGC +
Preference number: 5 (lower is better)
Translates to: KLSPSVKNSGKGQVR*ASSMGGQLPRGLPG
Trigger: GCCAGGCAACCCCCGTGGCAACTGGCCGCCCATGGAAGACGCTCATCGGACCTGGCCTTTGCCAGAGTTCTTCACAGAAGGGGACAGCTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 90 bp CTGTGCAAGCCTTCTGTGAAGAACTCTGGCAAAGGCCAGGTCCGATaGGCGTCTTCCATGGGCGGCCAGTTGCCACGGGGGTTGCCTGGC +
Preference number: 5 (lower is better)
Translates to: LCKPSVKNSGKGQVR*ASSMGGQLPRGLPG
Trigger: GCCAGGCAACCCCCGTGGCAACTGGCCGCCCATGGAAGACGCTCATCGGACCTGGCCTTTGCCAGAGTTCTTCACAGAAGGCTTGCACAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000205264.2
CDS CCA 90 bp TCCTATCTGCACAGGAACCGTGGGGAGCTCACACTGCATGGGCTGTaGGGGTGTCTGCCTTCGCCCTGTCTGCTGAGCTTCCGCCTCACT +
Preference number: 5 (lower is better)
Translates to: SYLHRNRGELTLHGL*GCLPSPCLLSFRLT
Trigger: AGTGAGGCGGAAGCTCAGCAGACAGGGCGAAGGCAGACACCCCCACAGCCCATGCAGTGTGAGCTCCCCACGGTTCCTGTGCAGATAGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp TGCTTGGCCGTGCTGAGGACACACTCACACGCATACATGCGCTTTGGCAAGACATCCATGGGCGGCCAGTaGCCACGGGGGTTGCCTGGC +
Preference number: 5 (lower is better)
Translates to: CLAVLRTHSHAYMRFGKTSMGGQ*PRGLPG
Trigger: GCCAGGCAACCCCCGTGGCAACTGGCCGCCCATGGA...TGTCTTGCCAAAGCGCATGTATGCGTGTGAGTGTGTCCTCAGCACGGCCAAGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS GCA 90 bp AAGGAGGTGGTATTGCAGTCATTGGCTGCAGCCCACACAGGGGACTaGAGCATCTGCACGGTGTCGTTCCACTGGCTGCCAGGACTGGCG +
Preference number: 5 (lower is better)
Translates to: KEVVLQSLAAAHTGD*SICTVSFHWLPGLA
Trigger: CGCCAGTCCTGGCAGCCAGTGGAACGACACCGTGCAGATGCTGCAGTCCCCTGTGTGGGCTGCAGCCAATGACTGCAATACCACCTCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp CTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCTGCTGCCATGGTGCTTaGGGTGGCCACGTTTTGGTT +
Preference number: 5 (lower is better)
Translates to: LPSTVPSVEERGAGAALVCCHGA*GGHVLV
Trigger: AACCAAAACGTGGCCACCCAAAGCACCATGGCAGCA...GACCAGGGCAGCACCAGCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp AGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGGGCAGCAGGTGTGGTATTGCAGTCATaGGCTGCAGCCCACACAGGG +
Preference number: 5 (lower is better)
Translates to: SVVLVLPWSWWKEVRAAGVVLQS*AAAHTG
Trigger: CCCTGTGTGGGCTGCAGCCAATGACTGCAATACCAC...ACCTGCTGCCCTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 90 bp CTCCCTGAGCTCCTGACCAGCCGCTGTGCAAGCTGTCCCCTTCTGTaGAGAACTCTGGCAAAGGCCAGGTCCGATGAGCGTCTTCCATGG +
Preference number: 5 (lower is better)
Translates to: LPELLTSRCASCPLL*RTLAKARSDERLPW
Trigger: CCATGGAAGACGCTCATCGGACCTGGCCTTTGCCAGAGTTCTTCACAGAAGGGGACAGCTTGCACAGCGGCTGGTCAGGAGCTCAGGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CCA 90 bp AGGTACTTAGAGATGCCCTGCTGGATGTCAGCAATGGGAGTAGAGTaGGGCATGGCATGGTGGCAGCTGCCTGCAGCGGTCAGACTGCCC +
Preference number: 5 (lower is better)
Translates to: RYLEMPCWMSAMGVE*GMAWWQLPAAVRLP
Trigger: GGGCAGTCTGACCGCTGCAGGCAGCTGCCACCATGCCATGCCCCACTCTACTCCCATTGCTGACATCCAGCAGGGCATCTCTAAGTACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS CCA 90 bp ATTTCGCAGGCGCCCGAGGCTGAGGTGGAGTCTGCTGTGATCCAATaGGTTGCAGCAGGTGCTGGTAGTACTGGACTTGGGGCTGCTGCT +
Preference number: 5 (lower is better)
Translates to: ISQAPEAEVESAVIQ*VAAGAGSTGLGAAA
Trigger: AGCAGCAGCCCCAAGTCCAGTACTACCAGCACCTGCTGCAACCCATTGGATCACAGCAGACTCCACCTCAGCCTCGGGCGCCTGCGAAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp AGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGGGCAGCAGGTATGCCCTTCTCATCCTaGCCATCATCCCCATGCAGG +
Preference number: 5 (lower is better)
Translates to: SVVLVLPWSWWKEVRAAGMPFSS*PSSPCR
Trigger: CCTGCATGGGGATGATGGCAAGGATGAGAAGGGCAT...ACCTGCTGCCCTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp TGCTTGGCCGTGCTGAGGACACACTCACACGCATACATGCGCTTTGGCAAGACATGGCCGGCGGCCATGTaGAGCTTGCCGCTTCTGCTG +
Preference number: 5 (lower is better)
Translates to: CLAVLRTHSHAYMRFGKTWPAAM*SLPLLL
Trigger: CAGCAGAAGCGGCAAGCTCAACATGGCCGCCGGCCA...TGTCTTGCCAAAGCGCATGTATGCGTGTGAGTGTGTCCTCAGCACGGCCAAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CAA 90 bp TGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCCATCTTCAGCTGGCTCTCAGTTGCCACGGGGGTaGCCTGGCCGGCGGCCATGT +
Preference number: 5 (lower is better)
Translates to: CRLPASPECQKSPSSAGSQLPRG*PGRRPC
Trigger: ACATGGCCGCCGGCCAGGCAACCCCCGTGGCAACTG...AGAGCCAGCTGAAGATGGAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp AGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGGGCAGCAGGTAAGGCCTTGAAGCCCTaGGGTGCTGCCTTATGTGCT +
Preference number: 5 (lower is better)
Translates to: SVVLVLPWSWWKEVRAAGKALKP*GAALCA
Trigger: AGCACATAAGGCAGCACCCAAGGGCTTCAAGGCCTT...ACCTGCTGCCCTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 90 bp ATGTACCCATTTCGCAGGCGCCCGAGGCTGAGGTGGAGTCTGCTGTaGTCCAATGGGTTGCAGCAGGTGCTGGTAGTACTGGACTTGGGG +
Preference number: 5 (lower is better)
Translates to: MYPFRRRPRLRWSLL*SNGLQQVLVVLDLG
Trigger: CCCCAAGTCCAGTACTACCAGCACCTGCTGCAACCCATTGGATCACAGCAGACTCCACCTCAGCCTCGGGCGCCTGCGAAATGGGTACAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS TCA 90 bp CCATTGGCTGAAGAGGTCTCATCACTGGAACTGGCCGAGTCTCCCTaGGCTCCTGACCAGCCGCTGTGCAAGCTGTCCCCTTCTGTGAAG +
Preference number: 5 (lower is better)
Translates to: PLAEEVSSLELAESP*APDQPLCKLSPSVK
Trigger: CTTCACAGAAGGGGACAGCTTGCACAGCGGCTGGTCAGGAGCTCAGGGAGACTCGGCCAGTTCCAGTGATGAGACCTCTTCAGCCAATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp TCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGATGCCCTTCTCATCCTaGCCATCATCCCCATGCAGG +
Preference number: 5 (lower is better)
Translates to: SVEERGAGAALVMVEGSEMPFSS*PSSPCR
Trigger: CCTGCATGGGGATGATGGCAAGGATGAGAAGGGCAT...CTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCTCCTCTACGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CCA 90 bp GGCCGAACAGCAGCTGCACAGCAGTCTTACAGGCACCCCGCCACATaGACGGGCACACCTGATTCAGGACTTCAGTCACAGGAAGATCAT +
Preference number: 5 (lower is better)
Translates to: GRTAAAQQSYRHPAT*TGTPDSGLQSQEDH
Trigger: ATGATCTTCCTGTGACTGAAGTCCTGAATCAGGTGTGCCCGTCCATGTGGCGGGGTGCCTGTAAGACTGCTGTGCAGCTGCTGTTCGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp AGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGGGCAGCAGGTCCATGTGGATGGGACTaGAACCACAATTCTGGAACC +
Preference number: 5 (lower is better)
Translates to: SVVLVLPWSWWKEVRAAGPCGWD*NHNSGT
Trigger: GGTTCCAGAATTGTGGTTCAAGTCCCATCCACATGG...ACCTGCTGCCCTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp CAAGGAATATTTCTGTCCCTGGGACAGGGTGTACTGGTCCTTCTGGGGGCTAGTGCCGCTTCTGCTGCATaGCCTGGCTCACTCCTGCCA +
Preference number: 5 (lower is better)
Translates to: QGIFLSLGQGVLVLLGASAASAA*PGSLLP
Trigger: TGGCAGGAGTGAGCCAGGCAATGCAGCAGAAGCGGC...ACTAGCCCCCAGAAGGACCAGTACACCCTGTCCCAGGGACAGAAATATTCCTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp CAAGGAATATTTCTGTCCCTGGGACAGGGTGTACTGGTCCTTCTGGGGGCTAGTTTCCCAGGGAAGGCCTaGAAGCCCTTGGGTGCTGCC +
Preference number: 5 (lower is better)
Translates to: QGIFLSLGQGVLVLLGASFPGKA*KPLGAA
Trigger: GGCAGCACCCAAGGGCTTCAAGGCCTTCCCTGGGAA...ACTAGCCCCCAGAAGGACCAGTACACCCTGTCCCAGGGACAGAAATATTCCTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 90 bp CCATTGGCTGAAGAGGTCTCATCACTGGAACTGGCCGAGTCTCCCTaGGCTCCTGACCAGCCGCTGTGCAAGCCTTCTGTGAAGAACTCT +
Preference number: 5 (lower is better)
Translates to: PLAEEVSSLELAESP*APDQPLCKPSVKNS
Trigger: AGAGTTCTTCACAGAAGGCTTGCACAGCGGCTGGTCAGGAGCTCAGGGAGACTCGGCCAGTTCCAGTGATGAGACCTCTTCAGCCAATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205264.2
CDS-3UTR CAA 90 bp GGTCTTGGTGCAACCCCTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCGCTGGTGCTCAGGAATaGCTGCACTTTGAGAACAAA +
Preference number: 5 (lower is better)
Translates to: GLGATPPLHSSFRRGAWCAGAQE*LHFENK
Trigger: TTTGTTCTCAAAGTGCAGCAATTCCTGAGCACCAGC...GCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAGGGGTTGCACCAAGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp GGTCTTGGTGCAACCCCTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCGGAAGCCAGCTTTCATaGCATATTCACAGTGGCCTA +
Preference number: 5 (lower is better)
Translates to: GLGATPPLHSSFRRGAWCGSQLS*HIHSGL
Trigger: TAGGCCACTGTGAATATGCAATGAAAGCTGGCTTCC...GCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAGGGGTTGCACCAAGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp GGTCTTGGTGCAACCCCTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTTGGGTGGCCACGTTTaGGTTTTGTTATCCTGGTTC +
Preference number: 5 (lower is better)
Translates to: GLGATPPLHSSFRRGAWCLGGHV*VLLSWF
Trigger: GAACCAGGATAACAAAACCAAAACGTGGCCACCCAA...GCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAGGGGTTGCACCAAGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 90 bp TTTGTTATCCTGGTTCACGTCCTCCACTGTGGTCAGGAGAGGTGGTaGGGGCAGTGTGCTGGTCTCCTGCTCTCCACTGCTGTGTTTCCT +
Preference number: 5 (lower is better)
Translates to: FVILVHVLHCGQERW*GQCAGLLLSTAVFP
Trigger: AGGAAACACAGCAGTGGAGAGCAGGAGACCAGCACACTGCCCTCACCACCTCTCCTGACCACAGTGGAGGACGTGAACCAGGATAACAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS GCA 90 bp GCACGGCAAAAGACATTGAGGGCATCCAGGTACTTAGAGATGCCCTaGTGGATGTCAGCAATGGGAGTAGAGTGGGGCATGGCATGGTGG +
Preference number: 5 (lower is better)
Translates to: ARQKTLRASRYLEMP*WMSAMGVEWGMAWW
Trigger: CCACCATGCCATGCCCCACTCTACTCCCATTGCTGACATCCAGCAGGGCATCTCTAAGTACCTGGATGCCCTCAATGTCTTTTGCCGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS GCA 90 bp AGATTGTCGGCAGCCGACTCATTAAAGGAGACCCCCTTCAGGAAGTaGGATCCTATCTGCACAGGAACCGTGGGGAGCTCACACTGCATG +
Preference number: 5 (lower is better)
Translates to: RLSAADSLKETPFRK*DPICTGTVGSSHCM
Trigger: CATGCAGTGTGAGCTCCCCACGGTTCCTGTGCAGATAGGATCGCACTTCCTGAAGGGGGTCTCCTTTAATGAGTCGGCTGCCGACAATCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS GCA 90 bp TGGTGTCTGAACATAGGTGAAGGAGGTGGTATTGCAGTCATTGGCTaGAGCCCACACAGGGGACTGCAGCATCTGCACGGTGTCGTTCCA +
Preference number: 5 (lower is better)
Translates to: WCLNIGEGGGIAVIG*SPHRGLQHLHGVVP
Trigger: TGGAACGACACCGTGCAGATGCTGCAGTCCCCTGTGTGGGCTGCAGCCAATGACTGCAATACCACCTCCTTCACCTATGTTCAGACACCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CCA 90 bp CGGCAAAAGACATTGAGGGCATCCAGGTACTTAGAGATGCCCTGCTaGATGTCAGCAATGGGAGTAGAGTGGGGCATGGCATGGTGGCAG +
Preference number: 5 (lower is better)
Translates to: RQKTLRASRYLEMPC*MSAMGVEWGMAWWQ
Trigger: CTGCCACCATGCCATGCCCCACTCTACTCCCATTGCTGACATCCAGCAGGGCATCTCTAAGTACCTGGATGCCCTCAATGTCTTTTGCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CAA 90 bp AGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAGGCTGTTCCTGCACATCTTaGAGCTGCATGGCGGCCTTT +
Preference number: 5 (lower is better)
Translates to: RQKCHPHTARMTTAEASGCSCTS*SCMAAF
Trigger: AAAGGCCGCCATGCAGCTCAAAGATGTGCAGGAACA...GCCTGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CAA 90 bp GGTCTTGGTGCAACCCCTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCAGAACAAAAGAGTTGTaGGACTTCGATTCCTGCCAG +
Preference number: 5 (lower is better)
Translates to: GLGATPPLHSSFRRGAWCRTKEL*DFDSCQ
Trigger: CTGGCAGGAATCGAAGTCCAACAACTCTTTTGTTCT...GCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAGGGGTTGCACCAAGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp GGTCTTGGTGCAACCCCTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTTATTGCCCATCATTTaGGCCCTTTCCTCTGAACAC +
Preference number: 5 (lower is better)
Translates to: GLGATPPLHSSFRRGAWCLLPII*ALSSEH
Trigger: GTGTTCAGAGGAAAGGGCCAAAATGATGGGCAATAA...GCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAGGGGTTGCACCAAGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp AGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGGGCAGCAGGTTCCAGGAGAAAGCCATaGACCATTGGATTACTGGAA +
Preference number: 5 (lower is better)
Translates to: SVVLVLPWSWWKEVRAAGSRRKP*TIGLLE
Trigger: TTCCAGTAATCCAATGGTCAATGGCTTTCTCCTGGA...ACCTGCTGCCCTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp GTCTGCTACCTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCCATGGGCGGCCAGTaGCCACGGGGGTTGCCTGGC +
Preference number: 5 (lower is better)
Translates to: VCYLQSLRNQALKTWSCQSMGGQ*PRGLPG
Trigger: GCCAGGCAACCCCCGTGGCAACTGGCCGCCCATGGA...TTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp TATTCCGAACCCACTGAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACTTCCCAGGGAAGGCCTaGAAGCCCTTGGGTGCTGCC +
Preference number: 5 (lower is better)
Translates to: YSEPTEKDLHYRQKCHPHFPGKA*KPLGAA
Trigger: GGCAGCACCCAAGGGCTTCAAGGCCTTCCCTGGGAA...GTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTCAGTGGGTTCGGAATA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CAA 90 bp TGCTTGGCCGTGCTGAGGACACACTCACACGCATACATGCGCTTTGGCAAGACATGTTCCTGCACATCTTaGAGCTGCATGGCGGCCTTT +
Preference number: 5 (lower is better)
Translates to: CLAVLRTHSHAYMRFGKTCSCTS*SCMAAF
Trigger: AAAGGCCGCCATGCAGCTCAAAGATGTGCAGGAACA...TGTCTTGCCAAAGCGCATGTATGCGTGTGAGTGTGTCCTCAGCACGGCCAAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CAA 90 bp GGTCTTGGTGCAACCCCTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTTGAGAACAAAAGAGTaGTTGGACTTCGATTCCTGC +
Preference number: 5 (lower is better)
Translates to: GLGATPPLHSSFRRGAWCLRTKE*LDFDSC
Trigger: GCAGGAATCGAAGTCCAACAACTCTTTTGTTCTCAA...GCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAGGGGTTGCACCAAGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp CTCCCCTCCACAGTTCCTTCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCCGTGTATCAATATTATaGCCCATCATTTTGGCCCTT +
Preference number: 5 (lower is better)
Translates to: LPSTVPSVEERGAGAALVRVSIL*PIILAL
Trigger: AAGGGCCAAAATGATGGGCAATAATATTGATACACG...GACCAGGGCAGCACCAGCACCACGCTCCTCTACGGAAGGAACTGTGGAGGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp TCCGTAGAGGAGCGTGGTGCTGGTGCTGCCCTGGTCATGGTGGAAGGAAGTGAGTCCAGGAGAAAGCCATaGACCATTGGATTACTGGAA +
Preference number: 5 (lower is better)
Translates to: SVEERGAGAALVMVEGSESRRKP*TIGLLE
Trigger: TTCCAGTAATCCAATGGTCAATGGCTTTCTCCTGGA...CTCACTTCCTTCCACCATGACCAGGGCAGCACCAGCACCACGCTCCTCTACGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp AGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAGGCAACAGACTGTCCCCATaGGCTGAAGAGGTCTCATCA +
Preference number: 5 (lower is better)
Translates to: RQKCHPHTARMTTAEASGNRLSP*AEEVSS
Trigger: TGATGAGACCTCTTCAGCCAATGGGGACAGTCTGTT...GCCTGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CAA 90 bp TACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAAAGGCCTTGAAGCCCTaGGGTGCTGCCTTATGTGCT +
Preference number: 5 (lower is better)
Translates to: YRQKCHPHTARMTTAEASKALKP*GAALCA
Trigger: AGCACATAAGGCAGCACCCAAGGGCTTCAAGGCCTT...TGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CAA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGTTCCCAGGGAAGGCCTaGAAGCCCTTGGGTGCTGCC +
Preference number: 5 (lower is better)
Translates to: RNLHLQLALRGLLPSKFEFPGKA*KPLGAA
Trigger: GGCAGCACCCAAGGGCTTCAAGGCCTTCCCTGGGAA...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CCA 90 bp GCCACCGGCTGGACTTTCTGCAAGGCGTGGGTCAAAAACTGGAAATaGACTTGCACCACTGTCAAGAAACATCGCCCCAACACCTCAATG +
Preference number: 5 (lower is better)
Translates to: ATGWTFCKAWVKNWK*TCTTVKKHRPNTSM
Trigger: CATTGAGGTGTTGGGGCGATGTTTCTTGACAGTGGTGCAAGTCCATTTCCAGTTTTTGACCCACGCCTTGCAGAAAGTCCAGCCGGTGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CAA 90 bp TGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCTTTGAGAACAAAAGAGTaGTTGGACTTCGATTCCTGC +
Preference number: 5 (lower is better)
Translates to: CTPWEARICLTAVAQSRSLRTKE*LDFDSC
Trigger: GCAGGAATCGAAGTCCAACAACTCTTTTGTTCTCAA...AGAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp CTGCACCCCCTGGGAGGCCAGAATATGCCTGACAGCAGTTGCCCAATCCCGCTCAGGAATTGCTGCACTTaGAGAACAAAAGAGTTGTTG +
Preference number: 5 (lower is better)
Translates to: LHPLGGQNMPDSSCPIPLRNCCT*RTKELL
Trigger: CAACAACTCTTTTGTTCTCAAAGTGCAGCAATTCCT...GAGCGGGATTGGGCAACTGCTGTCAGGCATATTCTGGCCTCCCAGGGGGTGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp CCAGTTTTGGAAGGTCACAACTATTCACATGATGTCCTGCTAATGCCGAGCAAGGCCGCTTCTGCTGCATaGCCTGGCTCACTCCTGCCA +
Preference number: 5 (lower is better)
Translates to: PVLEGHNYSHDVLLMPSKAASAA*PGSLLP
Trigger: TGGCAGGAGTGAGCCAGGCAATGCAGCAGAAGCGGC...CTTGCTCGGCATTAGCAGGACATCATGTGAATAGTTGTGACCTTCCAAAACTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CAA 90 bp AGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAGGCTTGGGTGGCCACGTTTaGGTTTTGTTATCCTGGTTC +
Preference number: 5 (lower is better)
Translates to: RQKCHPHTARMTTAEASGLGGHV*VLLSWF
Trigger: GAACCAGGATAACAAAACCAAAACGTGGCCACCCAA...GCCTGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CAA 90 bp GGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGCTGCCATGGTGCTTaGGGTGGCCACGTTTTGGTT +
Preference number: 5 (lower is better)
Translates to: GSSLQAEMSPPHSTNDNSCCHGA*GGHVLV
Trigger: AACCAAAACGTGGCCACCCAAAGCACCATGGCAGCA...GCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS TCA 90 bp TGTCCATATAGCTGCTCACTAGACCCAAGCTGTACAAGTCAGAGCTaGGATCAGATATGCCAGGCCACTGACCAAGAGGAGACAGACCCG +
Preference number: 5 (lower is better)
Translates to: CPYSCSLDPSCTSQS*DQICQATDQEETDP
Trigger: CGGGTCTGTCTCCTCTTGGTCAGTGGCCTGGCATATCTGATCTCAGCTCTGACTTGTACAGCTTGGGTCTAGTGAGCAGCTATATGGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp CAAGGAATATTTCTGTCCCTGGGACAGGGTGTACTGGTCCTTCTGGGGGCTAGTGCACGGCAAAAGACATaGAGGGCATCCAGGTACTTA +
Preference number: 5 (lower is better)
Translates to: QGIFLSLGQGVLVLLGASARQKT*RASRYL
Trigger: TAAGTACCTGGATGCCCTCAATGTCTTTTGCCGTGC...ACTAGCCCCCAGAAGGACCAGTACACCCTGTCCCAGGGACAGAAATATTCCTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CAA 90 bp GGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGGGTGGCTGGTGCTCAGGAATaGCTGCACTTTGAGAACAAA +
Preference number: 5 (lower is better)
Translates to: GAANHLRPKEYFCPWDRVAGAQE*LHFENK
Trigger: TTTGTTCTCAAAGTGCAGCAATTCCTGAGCACCAGC...CACCCTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp AGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTGAGGCCTCAGGCATCGCAGATATCCCTTaGCAGCTGGATCTGTATACA +
Preference number: 5 (lower is better)
Translates to: RQKCHPHTARMTTAEASGIADIP*QLDLYT
Trigger: TGTATACAGATCCAGCTGCAAAGGGATATCTGCGAT...GCCTGAGGCCTCAGCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CAA 90 bp GGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGGGTGAACCGGGATGTCAGTTaGGAGAAAGTCTTCTGCAGT +
Preference number: 5 (lower is better)
Translates to: GAANHLRPKEYFCPWDRVNRDVS*EKVFCS
Trigger: ACTGCAGAAGACTTTCTCCAAACTGACATCCCGGTT...CACCCTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGTGGCCGGCGGCCATGTaGAGCTTGCCGCTTCTGCTG +
Preference number: 5 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVWPAAM*SLPLLL
Trigger: CAGCAGAAGCGGCAAGCTCAACATGGCCGCCGGCCA...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp TATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTGTACCAGTTGCCACGGGGGTaGCCTGGCCGGCGGCCATGT +
Preference number: 5 (lower is better)
Translates to: YISLNEDSAELTNLQPVYQLPRG*PGRRPC
Trigger: ACATGGCCGCCGGCCAGGCAACCCCCGTGGCAACTG...GTACACTGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp GTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATGCAGGACTACGGCCACGTTTTGGTTTaGTTATCCTGGTTCACGTCC +
Preference number: 5 (lower is better)
Translates to: VSFVLSLQASCLSHMQDYGHVLV*LSWFTS
Trigger: GGACGTGAACCAGGATAACAAAACCAAAACGTGGCC...GTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS GCA 90 bp ACCGGGATGTCAGTTTGGAGAAAGTCTTCTGCAGTCCCGAGGATTTaGTTCCATTTCCAGAAGGCAGGTCAGCCTGATTCCCAAAATCGC +
Preference number: 5 (lower is better)
Translates to: TGMSVWRKSSAVPRI*FHFQKAGQPDSQNR
Trigger: GCGATTTTGGGAATCAGGCTGACCTGCCTTCTGGAAATGGAAGCAAATCCTCGGGACTGCAGAAGACTTTCTCCAAACTGACATCCCGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp GTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATGCAGGACTACGTCTTAAGCTTCAGATaGTCGGCAGCCGACTCATTA +
Preference number: 5 (lower is better)
Translates to: VSFVLSLQASCLSHMQDYVLSFR*SAADSL
Trigger: TAATGAGTCGGCTGCCGACAATCTGAAGCTTAAGAC...GTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp TATTCCGAACCCACTGAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACTGCAGTCCCGAGGATTaGCTTCCATTTCCAGAAGGC +
Preference number: 5 (lower is better)
Translates to: YSEPTEKDLHYRQKCHPHCSPED*LPFPEG
Trigger: GCCTTCTGGAAATGGAAGCAAATCCTCGGGACTGCA...GTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTCAGTGGGTTCGGAATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CAA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGGCCGCTTCTGCTGCATaGCCTGGCTCACTCCTGCCA +
Preference number: 5 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVAASAA*PGSLLP
Trigger: TGGCAGGAGTGAGCCAGGCAATGCAGCAGAAGCGGC...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp GGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCGGCCACGTTTTGGTTTaGTTATCCTGGTTCACGTCC +
Preference number: 5 (lower is better)
Translates to: GSSLQAEMSPPHSTNDNSGHVLV*LSWFTS
Trigger: GGACGTGAACCAGGATAACAAAACCAAAACGTGGCC...GCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CAA 90 bp CCAGTTTTGGAAGGTCACAACTATTCACATGATGTCCTGCTAATGCCGAGCAAGGTGGTATTGCAGTCATaGGCTGCAGCCCACACAGGG +
Preference number: 5 (lower is better)
Translates to: PVLEGHNYSHDVLLMPSKVVLQS*AAAHTG
Trigger: CCCTGTGTGGGCTGCAGCCAATGACTGCAATACCAC...CTTGCTCGGCATTAGCAGGACATCATGTGAATAGTTGTGACCTTCCAAAACTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CAA 90 bp GAGGTGCTTATTAAGCATGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCAAGGCCTTGAAGCCCTaGGGTGCTGCCTTATGTGCT +
Preference number: 5 (lower is better)
Translates to: EVLIKHADCQHPLSVRNLKALKP*GAALCA
Trigger: AGCACATAAGGCAGCACCCAAGGGCTTCAAGGCCTT...GAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCATGCTTAATAAGCACCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 90 bp AGCACTGAGTTCCATGAGCATCTTGGCAATCTCGGGCTTTATGGCTaGGGTCAATCTGCTGGCTGCTTCCATTACATGTTCCTGCACATC +
Preference number: 5 (lower is better)
Translates to: STEFHEHLGNLGLYG*GQSAGCFHYMFLHI
Trigger: GATGTGCAGGAACATGTAATGGAAGCAGCCAGCAGATTGACCTCAGCCATAAAGCCCGAGATTGCCAAGATGCTCATGGAACTCAGTGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS TCA 90 bp TGGAATAGTGTGTGCTGCCAGAGTTGGTGCATGACACTTTCTTTGTaGACCGGGATGTCAGTTTGGAGAAAGTCTTCTGCAGTCCCGAGG +
Preference number: 5 (lower is better)
Translates to: WNSVCCQSWCMTLSL*TGMSVWRKSSAVPR
Trigger: CCTCGGGACTGCAGAAGACTTTCTCCAAACTGACATCCCGGTTCACAAAGAAAGTGTCATGCACCAACTCTGGCAGCACACACTATTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 90 bp CATCCCCATGCAGGAAGTTCTCACGTCTCTCCAGGAGAAAGCCATTaGCCATTGGATTACTGGAATTCTGAGACGACTGTGAAGGGTCTG +
Preference number: 5 (lower is better)
Translates to: HPHAGSSHVSPGESH*PLDYWNSETTVKGL
Trigger: CAGACCCTTCACAGTCGTCTCAGAATTCCAGTAATCCAATGGTCAATGGCTTTCTCCTGGAGAGACGTGAGAACTTCCTGCATGGGGATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS GCA 90 bp GACACTTTCTTTGTGAACCGGGATGTCAGTTTGGAGAAAGTCTTCTaGAGTCCCGAGGATTTGCTTCCATTTCCAGAAGGCAGGTCAGCC +
Preference number: 5 (lower is better)
Translates to: DTFFVNRDVSLEKVF*SPEDLLPFPEGRSA
Trigger: GGCTGACCTGCCTTCTGGAAATGGAAGCAAATCCTCGGGACTGCAGAAGACTTTCTCCAAACTGACATCCCGGTTCACAAAGAAAGTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS GCA 90 bp TCAGTGGGTAAGTTCATGCCCTTCTCATCCTTGCCATCATCCCCATaGAGGAAGTTCTCACGTCTCTCCAGGAGAAAGCCATTGACCATT +
Preference number: 5 (lower is better)
Translates to: SVGKFMPFSSLPSSP*RKFSRLSRRKPLTI
Trigger: AATGGTCAATGGCTTTCTCCTGGAGAGACGTGAGAACTTCCTGCATGGGGATGATGGCAAGGATGAGAAGGGCATGAACTTACCCACTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CCA 90 bp AATCTCTCCCAGCATTCCAAAGACTCCATCACTTTGGTCACGGTTTaGCCAGGTGTTATTTCTAGGTCCCTGGGGCTTCTGTCCCAAAAC +
Preference number: 5 (lower is better)
Translates to: NLSQHSKDSITLVTV*PGVISRSLGLLSQN
Trigger: GTTTTGGGACAGAAGCCCCAGGGACCTAGAAATAACACCTGGCCAAACCGTGACCAAAGTGATGGAGTCTTTGGAATGCTGGGAGAGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp GTGTCAGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTGCACGGCAAAAGACATaGAGGGCATCCAGGTACTTA +
Preference number: 5 (lower is better)
Translates to: VSEISIFSWLSGVCYLQSARQKT*RASRYL
Trigger: TAAGTACCTGGATGCCCTCAATGTCTTTTGCCGTGC...ACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCTGACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CAA 90 bp ACTTGGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGGGAAGCCAGCTTTCATaGCATATTCACAGTGGCCTA +
Preference number: 5 (lower is better)
Translates to: TWSCQSPQTQGIFLSLGQGSQLS*HIHSGL
Trigger: TAGGCCACTGTGAATATGCAATGAAAGCTGGCTTCC...CTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCCAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp TATTCCGAACCCACTGAGAAGGATCTTCACTACAGGCAGAAATGTCACCCCCACCCATGTGGATGGGACTaGAACCACAATTCTGGAACC +
Preference number: 5 (lower is better)
Translates to: YSEPTEKDLHYRQKCHPHPCGWD*NHNSGT
Trigger: GGTTCCAGAATTGTGGTTCAAGTCCCATCCACATGG...GTGGGGGTGACATTTCTGCCTGTAGTGAAGATCCTTCTCAGTGGGTTCGGAATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CAA 90 bp GTCAGTTTTGTTCTCAGCCTGCAGGCCTCATGCCTTTCCCACATGCAGGACTACATCGCAGATATCCCTTaGCAGCTGGATCTGTATACA +
Preference number: 5 (lower is better)
Translates to: VSFVLSLQASCLSHMQDYIADIP*QLDLYT
Trigger: TGTATACAGATCCAGCTGCAAAGGGATATCTGCGAT...GTAGTCCTGCATGTGGGAAAGGCATGAGGCCTGCAGGCTGAGAACAAAACTGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp GGATCTTCACTACAGGCAGAAATGTCACCCCCACACAGCACGAATGACAACAGCTTGGGTGGCCACGTTTaGGTTTTGTTATCCTGGTTC +
Preference number: 5 (lower is better)
Translates to: GSSLQAEMSPPHSTNDNSLGGHV*VLLSWF
Trigger: GAACCAGGATAACAAAACCAAAACGTGGCCACCCAA...GCTGTTGTCATTCGTGCTGTGTGGGGGTGACATTTCTGCCTGTAGTGAAGATCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CAA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGGTGGTATTGCAGTCATaGGCTGCAGCCCACACAGGG +
Preference number: 5 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQVVLQS*AAAHTG
Trigger: CCCTGTGTGGGCTGCAGCCAATGACTGCAATACCAC...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 90 bp TGCAGTCCCGAGGATTTGCTTCCATTTCCAGAAGGCAGGTCAGCCTaGTTCCCAAAATCGCAGATATCCCTTTGCAGCTGGATCTGTATA +
Preference number: 5 (lower is better)
Translates to: CSPEDLLPFPEGRSA*FPKSQISLCSWICI
Trigger: TATACAGATCCAGCTGCAAAGGGATATCTGCGATTTTGGGAATCAGGCTGACCTGCCTTCTGGAAATGGAAGCAAATCCTCGGGACTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp ACTTGGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGTCCAGGAGAAAGCCATaGACCATTGGATTACTGGAA +
Preference number: 5 (lower is better)
Translates to: TWSCQSPQTQGIFLSLGQSRRKP*TIGLLE
Trigger: TTCCAGTAATCCAATGGTCAATGGCTTTCTCCTGGA...CTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCCAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGATGCCCTTCTCATCCTaGCCATCATCCCCATGCAGG +
Preference number: 5 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQMPFSS*PSSPCR
Trigger: CCTGCATGGGGATGATGGCAAGGATGAGAAGGGCAT...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp GTGTCAGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTAGAACAAAAGAGTTGTaGGACTTCGATTCCTGCCAG +
Preference number: 5 (lower is better)
Translates to: VSEISIFSWLSGVCYLQSRTKEL*DFDSCQ
Trigger: CTGGCAGGAATCGAAGTCCAACAACTCTTTTGTTCT...ACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCTGACAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGGCTGGTGCTCAGGAATaGCTGCACTTTGAGAACAAA +
Preference number: 5 (lower is better)
Translates to: RNLHLQLALRGLLPSKFEAGAQE*LHFENK
Trigger: TTTGTTCTCAAAGTGCAGCAATTCCTGAGCACCAGC...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGGGAAGCCAGCTTTCATaGCATATTCACAGTGGCCTA +
Preference number: 5 (lower is better)
Translates to: RNLHLQLALRGLLPSKFEGSQLS*HIHSGL
Trigger: TAGGCCACTGTGAATATGCAATGAAAGCTGGCTTCC...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp GAGGTGCTTATTAAGCATGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCGTCTTAAGCTTCAGATaGTCGGCAGCCGACTCATTA +
Preference number: 5 (lower is better)
Translates to: EVLIKHADCQHPLSVRNLVLSFR*SAADSL
Trigger: TAATGAGTCGGCTGCCGACAATCTGAAGCTTAAGAC...GAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCATGCTTAATAAGCACCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp CTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAATCACCTCAGTGCAGTCCCGAGGATTaGCTTCCATTTCCAGAAGGC +
Preference number: 5 (lower is better)
Translates to: LQSLRNQALKTWSCQSPQCSPED*LPFPEG
Trigger: GCCTTCTGGAAATGGAAGCAAATCCTCGGGACTGCA...CTGAGGTGATTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp GAGGTGCTTATTAAGCATGCAGATTGCCAGCATCCCCTGAGTGTCAGAAATCTCAACCGGGATGTCAGTTaGGAGAAAGTCTTCTGCAGT +
Preference number: 5 (lower is better)
Translates to: EVLIKHADCQHPLSVRNLNRDVS*EKVFCS
Trigger: ACTGCAGAAGACTTTCTCCAAACTGACATCCCGGTT...GAGATTTCTGACACTCAGGGGATGCTGGCAATCTGCATGCTTAATAAGCACCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGTGCTGCCATGGTGCTTaGGGTGGCCACGTTTTGGTT +
Preference number: 5 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVCCHGA*GGHVLV
Trigger: AACCAAAACGTGGCCACCCAAAGCACCATGGCAGCA...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp ACTTGGAGCTGCCAATCACCTCAGACCCAAGGAATATTTCTGTCCCTGGGACAGAGGAATTGCTGCACTTaGAGAACAAAAGAGTTGTTG +
Preference number: 5 (lower is better)
Translates to: TWSCQSPQTQGIFLSLGQRNCCT*RTKELL
Trigger: CAACAACTCTTTTGTTCTCAAAGTGCAGCAATTCCT...CTGTCCCAGGGACAGAAATATTCCTTGGGTCTGAGGTGATTGGCAGCTCCAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp GGCACTATGAAAATGAGAGTACTGCAGAAGACTAGAACTGGAAACACAGCACTGCCATGTGGATGGGACTaGAACCACAATTCTGGAACC +
Preference number: 5 (lower is better)
Translates to: GTMKMRVLQKTRTGNTALPCGWD*NHNSGT
Trigger: GGTTCCAGAATTGTGGTTCAAGTCCCATCCACATGG...CAGTGCTGTGTTTCCAGTTCTAGTCTTCTGCAGTACTCTCATTTTCATAGTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CAA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGTTATTGCCCATCATTTaGGCCCTTTCCTCTGAACAC +
Preference number: 5 (lower is better)
Translates to: RNLHLQLALRGLLPSKFELLPII*ALSSEH
Trigger: GTGTTCAGAGGAAAGGGCCAAAATGATGGGCAATAA...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp GGCACTATGAAAATGAGAGTACTGCAGAAGACTAGAACTGGAAACACAGCACTGAACAGACTGTCCCCATaGGCTGAAGAGGTCTCATCA +
Preference number: 5 (lower is better)
Translates to: GTMKMRVLQKTRTGNTALNRLSP*AEEVSS
Trigger: TGATGAGACCTCTTCAGCCAATGGGGACAGTCTGTT...CAGTGCTGTGTTTCCAGTTCTAGTCTTCTGCAGTACTCTCATTTTCATAGTGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS TCA 90 bp TATTATTGCCCATCATTTTGGCCCTTTCCTCTGAACACCCAGCTGTaGAGATGTTTTTGGAATAGTGTGTGCTGCCAGAGTTGGTGCATG +
Preference number: 5 (lower is better)
Translates to: YYCPSFWPFPLNTQL*RCFWNSVCCQSWCM
Trigger: CATGCACCAACTCTGGCAGCACACACTATTCCAAAAACATCTTCACAGCTGGGTGTTCAGAGGAAAGGGCCAAAATGATGGGCAATAATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGAAACTGGAAATGGACTaGCACCACTGTCAAGAAACA +
Preference number: 5 (lower is better)
Translates to: RNLHLQLALRGLLPSKFEKLEMD*HHCQET
Trigger: TGTTTCTTGACAGTGGTGCAAGTCCATTTCCAGTTT...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CAA 90 bp GTCTGCTACCTTCAAAGTTTGAGAAACCAGGCTTTAAAGACTTGGAGCTGCCAAAACCGGGATGTCAGTTaGGAGAAAGTCTTCTGCAGT +
Preference number: 5 (lower is better)
Translates to: VCYLQSLRNQALKTWSCQNRDVS*EKVFCS
Trigger: ACTGCAGAAGACTTTCTCCAAACTGACATCCCGGTT...TTGGCAGCTCCAAGTCTTTAAAGCCTGGTTTCTCAAACTTTGAAGGTAGCAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp GTGTCAGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTCGTGTATCAATATTATaGCCCATCATTTTGGCCCTT +
Preference number: 5 (lower is better)
Translates to: VSEISIFSWLSGVCYLQSRVSIL*PIILAL
Trigger: AAGGGCCAAAATGATGGGCAATAATATTGATACACG...ACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCTGACAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGAACAGACTGTCCCCATaGGCTGAAGAGGTCTCATCA +
Preference number: 5 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVNRLSP*AEEVSS
Trigger: TGATGAGACCTCTTCAGCCAATGGGGACAGTCTGTT...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 90 bp ACCATGTGGATGGGACTTGAACCACAATTCTGGAACCTTCAAGACTaGTCTGGGGTGCATAGGCTTCTTTATTTTCAATCTGTGCTGTGT +
Preference number: 5 (lower is better)
Translates to: TMWMGLEPQFWNLQD*SGVHRLLYFQSVLC
Trigger: ACACAGCACAGATTGAAAATAAAGAAGCCTATGCACCCCAGATCAGTCTTGAAGGTTCCAGAATTGTGGTTCAAGTCCCATCCACATGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS GCA 90 bp TGGGACTTGAACCACAATTCTGGAACCTTCAAGACTGATCTGGGGTaGATAGGCTTCTTTATTTTCAATCTGTGCTGTGTCAACAACCAC +
Preference number: 5 (lower is better)
Translates to: WDLNHNSGTFKTDLG*IGFFIFNLCCVNNH
Trigger: GTGGTTGTTGACACAGCACAGATTGAAAATAAAGAAGCCTATGCACCCCAGATCAGTCTTGAAGGTTCCAGAATTGTGGTTCAAGTCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp TATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTGTACTGCAGTCCCGAGGATTaGCTTCCATTTCCAGAAGGC +
Preference number: 5 (lower is better)
Translates to: YISLNEDSAELTNLQPVYCSPED*LPFPEG
Trigger: GCCTTCTGGAAATGGAAGCAAATCCTCGGGACTGCA...GTACACTGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp GGCACTATGAAAATGAGAGTACTGCAGAAGACTAGAACTGGAAACACAGCACTGTTATTGCCCATCATTTaGGCCCTTTCCTCTGAACAC +
Preference number: 5 (lower is better)
Translates to: GTMKMRVLQKTRTGNTALLLPII*ALSSEH
Trigger: GTGTTCAGAGGAAAGGGCCAAAATGATGGGCAATAA...CAGTGCTGTGTTTCCAGTTCTAGTCTTCTGCAGTACTCTCATTTTCATAGTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS-3UTR CAA 90 bp AGAAATCTCCATCTTCAGCTGGCTCTCAGGGGTCTGCTACCTTCAAAGTTTGAGCGTGTATCAATATTATaGCCCATCATTTTGGCCCTT +
Preference number: 5 (lower is better)
Translates to: RNLHLQLALRGLLPSKFERVSIL*PIILAL
Trigger: AAGGGCCAAAATGATGGGCAATAATATTGATACACG...CTCAAACTTTGAAGGTAGCAGACCCCTGAGAGCCAGCTGAAGATGGAGATTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 90 bp TTTATGTTTAGCTCTTTTAGCTGGTGCTCAGGAATTGCTGCACTTTaGGAACAAAAGAGTTGTTGGACTTCGATTCCTGCCAGGCATCCA +
Preference number: 5 (lower is better)
Translates to: FMFSSFSWCSGIAAL*EQKSCWTSIPARHP
Trigger: TGGATGCCTGGCAGGAATCGAAGTCCAACAACTCTTTTGTTCTCAAAGTGCAGCAATTCCTGAGCACCAGCTAAAAGAGCTAAACATAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 90 bp TGTGAAGATGTTTTTGGAATAGTGTGTGCTGCCAGAGTTGGTGCATaGCACTTTCTTTGTGAACCGGGATGTCAGTTTGGAGAAAGTCTT +
Preference number: 5 (lower is better)
Translates to: CEDVFGIVCAARVGA*HFLCEPGCQFGESL
Trigger: AAGACTTTCTCCAAACTGACATCCCGGTTCACAAAGAAAGTGTCATGCACCAACTCTGGCAGCACACACTATTCCAAAAACATCTTCACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 90 bp GAGAAAGCCATTGACCATTGGATTACTGGAATTCTGAGACGACTGTaGAGGGTCTGTAGTCCTAGGGAAGTTACCAATGTTCAAAATGCT +
Preference number: 5 (lower is better)
Translates to: EKAIDHWITGILRRL*RVCSPREVTNVQNA
Trigger: AGCATTTTGAACATTGGTAACTTCCCTAGGACTACAGACCCTTCACAGTCGTCTCAGAATTCCAGTAATCCAATGGTCAATGGCTTTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp TCCTGTCTACATCATAATTCCTTTGTCTCTGAGTCAGCTCACAATGTCACTGTGATCGCAGATATCCCTTaGCAGCTGGATCTGTATACA +
Preference number: 5 (lower is better)
Translates to: SCLHHNSFVSESAHNVTVIADIP*QLDLYT
Trigger: TGTATACAGATCCAGCTGCAAAGGGATATCTGCGAT...CACAGTGACATTGTGAGCTGACTCAGAGACAAAGGAATTATGATGTAGACAGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp GCATCTTATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGGCCACGTTTTGGTTTaGTTATCCTGGTTCACGTCC +
Preference number: 5 (lower is better)
Translates to: ASYISLNEDSAELTNLQPGHVLV*LSWFTS
Trigger: GGACGTGAACCAGGATAACAAAACCAAAACGTGGCC...TGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATAAGATGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp GCATCTTATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTCTTAAGCTTCAGATaGTCGGCAGCCGACTCATTA +
Preference number: 5 (lower is better)
Translates to: ASYISLNEDSAELTNLQPVLSFR*SAADSL
Trigger: TAATGAGTCGGCTGCCGACAATCTGAAGCTTAAGAC...TGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATAAGATGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp GCATCTTATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAAGAACAAAAGAGTTGTaGGACTTCGATTCCTGCCAG +
Preference number: 5 (lower is better)
Translates to: ASYISLNEDSAELTNLQPRTKEL*DFDSCQ
Trigger: CTGGCAGGAATCGAAGTCCAACAACTCTTTTGTTCT...TGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATAAGATGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS-3UTR CAA 90 bp TATATAAGCTTAAATGAAGACAGTGCTGAGCTAACTAACCTTCAGCCAGTGTACAGGAATTGCTGCACTTaGAGAACAAAAGAGTTGTTG +
Preference number: 5 (lower is better)
Translates to: YISLNEDSAELTNLQPVYRNCCT*RTKELL
Trigger: CAACAACTCTTTTGTTCTCAAAGTGCAGCAATTCCT...GTACACTGGCTGAAGGTTAGTTAGCTCAGCACTGTCTTCATTTAAGCTTATATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS GCA 72 bp GGCAGAGGGGGCGGTGGATGCCAGGGGAGCGCTCAGTaGTCGGCCCAGCTCAGGCATCGGGTACTGCTGGTG +
Preference number: 6 (lower is better)
Translates to: GRGGGGCQGSAQ*SAQLRHRVLLV
Trigger: CACCAGCAGTACCCGATGCCTGAGCTGGGCCGAGCACTGAGCGCTCCCCTGGCATCCACCGCCCCCTCTGCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS GCA 72 bp GCCAGGTCCGATGAGCGTCTTCCATGGGCGGCCAGTTaGCACGGGGGTTGCCTGGCCGGCGGCCATGTTGAG +
Preference number: 6 (lower is better)
Translates to: ARSDERLPWAAS*HGGCLAGGHVE
Trigger: CTCAACATGGCCGCCGGCCAGGCAACCCCCGTGGCAACTGGCCGCCCATGGAAGACGCTCATCGGACCTGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS CAA 90 bp CATGGGCGGCCAGTTGCCACGGGGGTTGCCTGGCCGGCGGCCATGTaGAGCTTGCCGCTTCTGCTGCATTGCCTGGCTCACTCCTGCCAC +
Preference number: 6 (lower is better)
Translates to: HGRPVATGVAWPAAM*SLPLLLHCLAHSCH
Trigger: GTGGCAGGAGTGAGCCAGGCAATGCAGCAGAAGCGGCAAGCTCAACATGGCCGCCGGCCAGGCAACCCCCGTGGCAACTGGCCGCCCATG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS GCA 72 bp TGGAGACTGCTGCTGAGGAGCCAGACCTTGCTGGGCTaGCAGAGGCGTGTGTGCTCCAGCCTGGGGTGGCCG +
Preference number: 6 (lower is better)
Translates to: WRLLLRSQTLLG*QRRVCSSLGWP
Trigger: CGGCCACCCCAGGCTGGAGCACACACGCCTCTGGCAGCCCAGCAAGGTCTGGCTCCTCAGCAGCAGTCTCCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS GCA 72 bp GAGCGTCTTCCATGGGCGGCCAGTTGCCACGGGGGTTaGCTGGCCGGCGGCCATGTTGAGCTTGCCGCTTCT +
Preference number: 6 (lower is better)
Translates to: ERLPWAASCHGG*LAGGHVELAAS
Trigger: AGAAGCGGCAAGCTCAACATGGCCGCCGGCCAGGCAACCCCCGTGGCAACTGGCCGCCCATGGAAGACGCTC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS CCA 72 bp GTCTTCCATGGGCGGCCAGTTGCCACGGGGGTTGCCTaGCCGGCGGCCATGTTGAGCTTGCCGCTTCTGCTG +
Preference number: 6 (lower is better)
Translates to: VFHGRPVATGVA*PAAMLSLPLLL
Trigger: CAGCAGAAGCGGCAAGCTCAACATGGCCGCCGGCCAGGCAACCCCCGTGGCAACTGGCCGCCCATGGAAGAC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS CCA 72 bp ACTCTGGCAAAGGCCAGGTCCGATGAGCGTCTTCCATaGGCGGCCAGTTGCCACGGGGGTTGCCTGGCCGGC +
Preference number: 6 (lower is better)
Translates to: TLAKARSDERLP*AASCHGGCLAG
Trigger: GCCGGCCAGGCAACCCCCGTGGCAACTGGCCGCCCATGGAAGACGCTCATCGGACCTGGCCTTTGCCAGAGT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS CCA 72 bp GCTGCCAGGACTGGCGACTGCATAGAGTGGTGCAGCTaGGCTGGGCAGCGTGCTGGGCATCGGGGAAGGGTG +
Preference number: 6 (lower is better)
Translates to: AARTGDCIEWCS*AGQRAGHRGRV
Trigger: CACCCTTCCCCGATGCCCAGCACGCTGCCCAGCCCAGCTGCACCACTCTATGCAGTCGCCAGTCCTGGCAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS CAA 72 bp GCCACGGGGGTTGCCTGGCCGGCGGCCATGTTGAGCTaGCCGCTTCTGCTGCATTGCCTGGCTCACTCCTGC +
Preference number: 6 (lower is better)
Translates to: ATGVAWPAAMLS*PLLLHCLAHSC
Trigger: GCAGGAGTGAGCCAGGCAATGCAGCAGAAGCGGCAAGCTCAACATGGCCGCCGGCCAGGCAACCCCCGTGGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS CAA 90 bp CGGCCAGTTGCCACGGGGGTTGCCTGGCCGGCGGCCATGTTGAGCTaGCCGCTTCTGCTGCATTGCCTGGCTCACTCCTGCCACATAGCG +
Preference number: 6 (lower is better)
Translates to: RPVATGVAWPAAMLS*PLLLHCLAHSCHIA
Trigger: CGCTATGTGGCAGGAGTGAGCCAGGCAATGCAGCAGAAGCGGCAAGCTCAACATGGCCGCCGGCCAGGCAACCCCCGTGGCAACTGGCCG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS GCA 72 bp CGGCCCAGCTCAGGCATCGGGTACTGCTGGTGCTGCTaGACCTTCTGCTTGGACCCGCCAAGCAGGAAGCGC +
Preference number: 6 (lower is better)
Translates to: RPSSGIGYCWCC*TFCLDPPSRKR
Trigger: GCGCTTCCTGCTTGGCGGGTCCAAGCAGAAGGTGCAGCAGCACCAGCAGTACCCGATGCCTGAGCTGGGCCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS CAA 72 bp CCAGTTGCCACGGGGGTTGCCTGGCCGGCGGCCATGTaGAGCTTGCCGCTTCTGCTGCATTGCCTGGCTCAC +
Preference number: 6 (lower is better)
Translates to: PVATGVAWPAAM*SLPLLLHCLAH
Trigger: GTGAGCCAGGCAATGCAGCAGAAGCGGCAAGCTCAACATGGCCGCCGGCCAGGCAACCCCCGTGGCAACTGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS TCA 72 bp CAGTTGCCACGGGGGTTGCCTGGCCGGCGGCCATGTTaGGCTTGCCGCTTCTGCTGCATTGCCTGGCTCACT +
Preference number: 6 (lower is better)
Translates to: QLPRGLPGRRPC*ACRFCCIAWLT
Trigger: AGTGAGCCAGGCAATGCAGCAGAAGCGGCAAGCTCAACATGGCCGCCGGCCAGGCAACCCCCGTGGCAACTG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS GCA 72 bp AGTGCTCGGCCCAGCTCAGGCATCGGGTACTGCTGGTaGTGCTGCACCTTCTGCTTGGACCCGCCAAGCAGG +
Preference number: 6 (lower is better)
Translates to: SARPSSGIGYCW*CCTFCLDPPSR
Trigger: CCTGCTTGGCGGGTCCAAGCAGAAGGTGCAGCAGCACCAGCAGTACCCGATGCCTGAGCTGGGCCGAGCACT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS GCA 72 bp GCTGGGCTGGGCAGCGTGCTGGGCATCGGGGAAGGGTaGTGCCATGGTGCTTTGGGTGGCCACGTTTTGGTT +
Preference number: 6 (lower is better)
Translates to: AGLGSVLGIGEG*CHGALGGHVLV
Trigger: AACCAAAACGTGGCCACCCAAAGCACCATGGCAGCACCCTTCCCCGATGCCCAGCACGCTGCCCAGCCCAGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS GCA 72 bp CGACTGCATAGAGTGGTGCAGCTGGGCTGGGCAGCGTaGTGGGCATCGGGGAAGGGTGCTGCCATGGTGCTT +
Preference number: 6 (lower is better)
Translates to: RLHRVVQLGWAA*WASGKGAAMVL
Trigger: AAGCACCATGGCAGCACCCTTCCCCGATGCCCAGCACGCTGCCCAGCCCAGCTGCACCACTCTATGCAGTCG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS GCA 72 bp CACGGTGTCGTTCCACTGGCTGCCAGGACTGGCGACTaGATAGAGTGGTGCAGCTGGGCTGGGCAGCGTGCT +
Preference number: 6 (lower is better)
Translates to: HGVVPLAARTGD*IEWCSWAGQRA
Trigger: AGCACGCTGCCCAGCCCAGCTGCACCACTCTATGCAGTCGCCAGTCCTGGCAGCCAGTGGAACGACACCGTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS GCA 72 bp TCATTGGCTGCAGCCCACACAGGGGACTGCAGCATCTaGACGGTGTCGTTCCACTGGCTGCCAGGACTGGCG +
Preference number: 6 (lower is better)
Translates to: SLAAAHTGDCSI*TVSFHWLPGLA
Trigger: CGCCAGTCCTGGCAGCCAGTGGAACGACACCGTGCAGATGCTGCAGTCCCCTGTGTGGGCTGCAGCCAATGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CCA 72 bp CACAGGAACCGTGGGGAGCTCACACTGCATGGGCTGTaGGGGTGTCTGCCTTCGCCCTGTCTGCTGAGCTTC +
Preference number: 6 (lower is better)
Translates to: HRNRGELTLHGL*GCLPSPCLLSF
Trigger: GAAGCTCAGCAGACAGGGCGAAGGCAGACACCCCCACAGCCCATGCAGTGTGAGCTCCCCACGGTTCCTGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CCA 72 bp GCATCTGCACGGTGTCGTTCCACTGGCTGCCAGGACTaGCGACTGCATAGAGTGGTGCAGCTGGGCTGGGCA +
Preference number: 6 (lower is better)
Translates to: ASARCRSTGCQD*RLHRVVQLGWA
Trigger: TGCCCAGCCCAGCTGCACCACTCTATGCAGTCGCCAGTCCTGGCAGCCAGTGGAACGACACCGTGCAGATGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CAA 90 bp GGTTGCCTGGCCGGCGGCCATGTTGAGCTTGCCGCTTCTGCTGCATaGCCTGGCTCACTCCTGCCACATAGCGTGCGAATTCTGGGTCTG +
Preference number: 6 (lower is better)
Translates to: GCLAGGHVELAASAA*PGSLLPHSVRILGL
Trigger: CAGACCCAGAATTCGCACGCTATGTGGCAGGAGTGAGCCAGGCAATGCAGCAGAAGCGGCAAGCTCAACATGGCCGCCGGCCAGGCAACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS CAA 72 bp CTACGTTCAGCCTTCCCAGGGAAGGCCTTGAAGCCCTaGGGTGCTGCCTTATGTGCTGGTGGAGGTGGGGGC +
Preference number: 6 (lower is better)
Translates to: LRSAFPGKALKP*GAALCAGGGGG
Trigger: GCCCCCACCTCCACCAGCACATAAGGCAGCACCCAAGGGCTTCAAGGCCTTCCCTGGGAAGGCTGAACGTAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 72 bp GAAGAGGTCTCATCACTGGAACTGGCCGAGTCTCCCTaGGCTCCTGACCAGCCGCTGTGCAAGCTGTCCCCT +
Preference number: 6 (lower is better)
Translates to: EEVSSLELAESP*APDQPLCKLSP
Trigger: AGGGGACAGCTTGCACAGCGGCTGGTCAGGAGCTCAGGGAGACTCGGCCAGTTCCAGTGATGAGACCTCTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS GCA 72 bp CCGGCGGCCATGTTGAGCTTGCCGCTTCTGCTGCATTaGCTGGCTCACTCCTGCCACATAGCGTGCGAATTC +
Preference number: 6 (lower is better)
Translates to: PAAMLSLPLLLH*LAHSCHIACEF
Trigger: GAATTCGCACGCTATGTGGCAGGAGTGAGCCAGGCAATGCAGCAGAAGCGGCAAGCTCAACATGGCCGCCGG
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS CCA 72 bp GCGCCCGAGGCTGAGGTGGAGTCTGCTGTGATCCAATaGGTTGCAGCAGGTGCTGGTAGTACTGGACTTGGG +
Preference number: 6 (lower is better)
Translates to: APEAEVESAVIQ*VAAGAGSTGLG
Trigger: CCCAAGTCCAGTACTACCAGCACCTGCTGCAACCCATTGGATCACAGCAGACTCCACCTCAGCCTCGGGCGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS CAA 72 bp GCCGGCGGCCATGTTGAGCTTGCCGCTTCTGCTGCATaGCCTGGCTCACTCCTGCCACATAGCGTGCGAATT +
Preference number: 6 (lower is better)
Translates to: AGGHVELAASAA*PGSLLPHSVRI
Trigger: AATTCGCACGCTATGTGGCAGGAGTGAGCCAGGCAATGCAGCAGAAGCGGCAAGCTCAACATGGCCGCCGGC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS TCA 72 bp TTTCGCAGGCGCCCGAGGCTGAGGTGGAGTCTGCTGTaGTCCAATGGGTTGCAGCAGGTGCTGGTAGTACTG +
Preference number: 6 (lower is better)
Translates to: FRRRPRLRWSLL*SNGLQQVLVVL
Trigger: CAGTACTACCAGCACCTGCTGCAACCCATTGGATCACAGCAGACTCCACCTCAGCCTCGGGCGCCTGCGAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS TCA 72 bp GATGAGCCATGTACCCATTTCGCAGGCGCCCGAGGCTaGGGTGGAGTCTGCTGTGATCCAATGGGTTGCAGC +
Preference number: 6 (lower is better)
Translates to: DEPCTHFAGARG*GGVCCDPMGCS
Trigger: GCTGCAACCCATTGGATCACAGCAGACTCCACCTCAGCCTCGGGCGCCTGCGAAATGGGTACATGGCTCATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS TCA 72 bp CTCCTGACCAGCCGCTGTGCAAGCTGTCCCCTTCTGTaGAGAACTCTGGCAAAGGCCAGGTCCGATGAGCGT +
Preference number: 6 (lower is better)
Translates to: LLTSRCASCPLL*RTLAKARSDER
Trigger: ACGCTCATCGGACCTGGCCTTTGCCAGAGTTCTTCACAGAAGGGGACAGCTTGCACAGCGGCTGGTCAGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 72 bp CCTGAGCTCCTGACCAGCCGCTGTGCAAGCCTTCTGTaGAGAACTCTGGCAAAGGCCAGGTCCGATGAGCGT +
Preference number: 6 (lower is better)
Translates to: PELLTSRCASLL*RTLAKARSDER
Trigger: ACGCTCATCGGACCTGGCCTTTGCCAGAGTTCTTCACAGAAGGCTTGCACAGCGGCTGGTCAGGAGCTCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205264.2
CDS TCA 72 bp GAAGAGGTCTCATCACTGGAACTGGCCGAGTCTCCCTaGGCTCCTGACCAGCCGCTGTGCAAGCCTTCTGTG +
Preference number: 6 (lower is better)
Translates to: EEVSSLELAESP*APDQPLCKPSV
Trigger: CACAGAAGGCTTGCACAGCGGCTGGTCAGGAGCTCAGGGAGACTCGGCCAGTTCCAGTGATGAGACCTCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205264.2
CDS GCA 72 bp GTATTGCAGTCATTGGCTGCAGCCCACACAGGGGACTaGAGCATCTGCACGGTGTCGTTCCACTGGCTGCCA +
Preference number: 6 (lower is better)
Translates to: VLQSLAAAHTGD*SICTVSFHWLP
Trigger: TGGCAGCCAGTGGAACGACACCGTGCAGATGCTGCAGTCCCCTGTGTGGGCTGCAGCCAATGACTGCAATAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CCA 72 bp GCCGCTGTGCAAGCTGTCCCCTTCTGTGAAGAACTCTaGCAAAGGCCAGGTCCGATGAGCGTCTTCCATGGG +
Preference number: 6 (lower is better)
Translates to: AAVQAVPFCEEL*QRPGPMSVFHG
Trigger: CCCATGGAAGACGCTCATCGGACCTGGCCTTTGCCAGAGTTCTTCACAGAAGGGGACAGCTTGCACAGCGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CCA 72 bp CATGGCAGTGGCAGTAGAGTTACGCCTTGTCACCAGTaGGGACCCCTGATGGGACTGGCCCATGTTAAAGCC +
Preference number: 6 (lower is better)
Translates to: HGSGSRVTPCHQ*GPLMGLAHVKA
Trigger: GGCTTTAACATGGGCCAGTCCCATCAGGGGTCCCCACTGGTGACAAGGCGTAACTCTACTGCCACTGCCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CAA 90 bp GGCATCGGGGAAGGGTGCTGCCATGGTGCTTTGGGTGGCCACGTTTaGGTTTTGTTATCCTGGTTCACGTCCTCCACTGTGGTCAGGAGA +
Preference number: 6 (lower is better)
Translates to: GIGEGCCHGALGGHV*VLLSWFTSSTVVRR
Trigger: TCTCCTGACCACAGTGGAGGACGTGAACCAGGATAACAAAACCAAAACGTGGCCACCCAAAGCACCATGGCAGCACCCTTCCCCGATGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS GCA 72 bp TTAAAGGAGACCCCCTTCAGGAAGTGCGATCCTATCTaGACAGGAACCGTGGGGAGCTCACACTGCATGGGC +
Preference number: 6 (lower is better)
Translates to: LKETPFRKCDPI*TGTVGSSHCMG
Trigger: GCCCATGCAGTGTGAGCTCCCCACGGTTCCTGTGCAGATAGGATCGCACTTCCTGAAGGGGGTCTCCTTTAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS GCA 72 bp GCAGCCGACTCATTAAAGGAGACCCCCTTCAGGAAGTaGGATCCTATCTGCACAGGAACCGTGGGGAGCTCA +
Preference number: 6 (lower is better)
Translates to: AADSLKETPFRK*DPICTGTVGSS
Trigger: TGAGCTCCCCACGGTTCCTGTGCAGATAGGATCGCACTTCCTGAAGGGGGTCTCCTTTAATGAGTCGGCTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 72 bp TACAAGTCAGAGCTGAGATCAGATATGCCAGGCCACTaGCCAAGAGGAGACAGACCCGCTGCCATGGGCTGT +
Preference number: 6 (lower is better)
Translates to: YKSELRSDMPGH*PRGDRPAAMGC
Trigger: ACAGCCCATGGCAGCGGGTCTGTCTCCTCTTGGTCAGTGGCCTGGCATATCTGATCTCAGCTCTGACTTGTA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS GCA 72 bp AACATAGGTGAAGGAGGTGGTATTGCAGTCATTGGCTaGAGCCCACACAGGGGACTGCAGCATCTGCACGGT +
Preference number: 6 (lower is better)
Translates to: NIGEGGGIAVIG*SPHRGLQHLHG
Trigger: ACCGTGCAGATGCTGCAGTCCCCTGTGTGGGCTGCAGCCAATGACTGCAATACCACCTCCTTCACCTATGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 72 bp GCAGTAGAGTTACGCCTTGTCACCAGTGGGGACCCCTaGTGGGACTGGCCCATGTTAAAGCCTGAGAGAAAA +
Preference number: 6 (lower is better)
Translates to: AVELRLVTSGDP*WDWPMLKPERK
Trigger: TTTTCTCTCAGGCTTTAACATGGGCCAGTCCCATCAGGGGTCCCCACTGGTGACAAGGCGTAACTCTACTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS GCA 72 bp AGTGGAGGAGCCAATGGCAGTGATGGCTGCTGTGGTTaGATGGTTCCTGTCTTCTGTTCAGTCACCATGGCA +
Preference number: 6 (lower is better)
Translates to: SGGANGSDGCCG*MVPVFCSVTMA
Trigger: TGCCATGGTGACTGAACAGAAGACAGGAACCATGCAACCACAGCAGCCATCACTGCCATTGGCTCCTCCACT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CCA 72 bp ACATTGAGGGCATCCAGGTACTTAGAGATGCCCTGCTaGATGTCAGCAATGGGAGTAGAGTGGGGCATGGCA +
Preference number: 6 (lower is better)
Translates to: TLRASRYLEMPC*MSAMGVEWGMA
Trigger: TGCCATGCCCCACTCTACTCCCATTGCTGACATCCAGCAGGGCATCTCTAAGTACCTGGATGCCCTCAATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS CCA 72 bp AAGGGTGCTGCCATGGTGCTTTGGGTGGCCACGTTTTaGTTTTGTTATCCTGGTTCACGTCCTCCACTGTGG +
Preference number: 6 (lower is better)
Translates to: KGAAMVLWVATF*FCYPGSRPPLW
Trigger: CCACAGTGGAGGACGTGAACCAGGATAACAAAACCAAAACGTGGCCACCCAAAGCACCATGGCAGCACCCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS CAA 72 bp TCAGGCCCTGAAAACATGGAGAACAGACTGTCCCCATaGGCTGAAGAGGTCTCATCACTGGAACTGGCCGAG +
Preference number: 6 (lower is better)
Translates to: SGPENMENRLSP*AEEVSSLELAE
Trigger: CTCGGCCAGTTCCAGTGATGAGACCTCTTCAGCCAATGGGGACAGTCTGTTCTCCATGTTTTCAGGGCCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS CAA 72 bp TGCTGCCATGGTGCTTTGGGTGGCCACGTTTTGGTTTaGTTATCCTGGTTCACGTCCTCCACTGTGGTCAGG +
Preference number: 6 (lower is better)
Translates to: CCHGALGGHVLV*LSWFTSSTVVR
Trigger: CCTGACCACAGTGGAGGACGTGAACCAGGATAACAAAACCAAAACGTGGCCACCCAAAGCACCATGGCAGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS CAA 72 bp GAAGGGTGCTGCCATGGTGCTTTGGGTGGCCACGTTTaGGTTTTGTTATCCTGGTTCACGTCCTCCACTGTG +
Preference number: 6 (lower is better)
Translates to: EGCCHGALGGHV*VLLSWFTSSTV
Trigger: CACAGTGGAGGACGTGAACCAGGATAACAAAACCAAAACGTGGCCACCCAAAGCACCATGGCAGCACCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS TCA 72 bp AGCTGCTCACTAGACCCAAGCTGTACAAGTCAGAGCTaGGATCAGATATGCCAGGCCACTGACCAAGAGGAG +
Preference number: 6 (lower is better)
Translates to: SCSLDPSCTSQS*DQICQATDQEE
Trigger: CTCCTCTTGGTCAGTGGCCTGGCATATCTGATCTCAGCTCTGACTTGTACAGCTTGGGTCTAGTGAGCAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS GCA 72 bp AAGACATTGAGGGCATCCAGGTACTTAGAGATGCCCTaGTGGATGTCAGCAATGGGAGTAGAGTGGGGCATG +
Preference number: 6 (lower is better)
Translates to: KTLRASRYLEMP*WMSAMGVEWGM
Trigger: CATGCCCCACTCTACTCCCATTGCTGACATCCAGCAGGGCATCTCTAAGTACCTGGATGCCCTCAATGTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS CCA 72 bp CCGCCTCACTGCAGCAGCCCTGCAAACTTGCTTCAATaGCCTTTGGGTTTAGATGGAAGCCAGCTTTCATTG +
Preference number: 6 (lower is better)
Translates to: PPHCSSPANLLQ*PLGLDGSQLSL
Trigger: CAATGAAAGCTGGCTTCCATCTAAACCCAAAGGCCATTGAAGCAAGTTTGCAGGGCTGCTGCAGTGAGGCGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CCA 72 bp TTTTGGTTTTGTTATCCTGGTTCACGTCCTCCACTGTaGTCAGGAGAGGTGGTGAGGGCAGTGTGCTGGTCT +
Preference number: 6 (lower is better)
Translates to: FWFCYPGSRPPL*SGEVVRAVCWS
Trigger: AGACCAGCACACTGCCCTCACCACCTCTCCTGACCACAGTGGAGGACGTGAACCAGGATAACAAAACCAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS CAA 90 bp CGGCTGGACTTTCTGCAAGGCGTGGGTCAAAAACTGGAAATGGACTaGCACCACTGTCAAGAAACATCGCCCCAACACCTCAATGTCCTG +
Preference number: 6 (lower is better)
Translates to: RLDFLQGVGQKLEMD*HHCQETSPQHLNVL
Trigger: CAGGACATTGAGGTGTTGGGGCGATGTTTCTTGACAGTGGTGCAAGTCCATTTCCAGTTTTTGACCCACGCCTTGCAGAAAGTCCAGCCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS CAA 90 bp GTGCTGAAGAGATCTGTGAGGAACGTACTAGCACGGCAAAAGACATaGAGGGCATCCAGGTACTTAGAGATGCCCTGCTGGATGTCAGCA +
Preference number: 6 (lower is better)
Translates to: VLKRSVRNVLARQKT*RASRYLEMPCWMSA
Trigger: TGCTGACATCCAGCAGGGCATCTCTAAGTACCTGGATGCCCTCAATGTCTTTTGCCGTGCTAGTACGTTCCTCACAGATCTCTTCAGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS GCA 72 bp AAGTTCATGCCCTTCTCATCCTTGCCATCATCCCCATaGAGGAAGTTCTCACGTCTCTCCAGGAGAAAGCCA +
Preference number: 6 (lower is better)
Translates to: KFMPFSSLPSSP*RKFSRLSRRKP
Trigger: TGGCTTTCTCCTGGAGAGACGTGAGAACTTCCTGCATGGGGATGATGGCAAGGATGAGAAGGGCATGAACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CCA 72 bp ACCGGCTGGACTTTCTGCAAGGCGTGGGTCAAAAACTaGAAATGGACTTGCACCACTGTCAAGAAACATCGC +
Preference number: 6 (lower is better)
Translates to: TGWTFCKAWVKN*KWTCTTVKKHR
Trigger: GCGATGTTTCTTGACAGTGGTGCAAGTCCATTTCCAGTTTTTGACCCACGCCTTGCAGAAAGTCCAGCCGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS CCA 72 bp CAGCATTCCAAAGACTCCATCACTTTGGTCACGGTTTaGCCAGGTGTTATTTCTAGGTCCCTGGGGCTTCTG +
Preference number: 6 (lower is better)
Translates to: QHSKDSITLVTV*PGVISRSLGLL
Trigger: CAGAAGCCCCAGGGACCTAGAAATAACACCTGGCCAAACCGTGACCAAAGTGATGGAGTCTTTGGAATGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS CAA 72 bp AGATCTGTGAGGAACGTACTAGCACGGCAAAAGACATaGAGGGCATCCAGGTACTTAGAGATGCCCTGCTGG +
Preference number: 6 (lower is better)
Translates to: RSVRNVLARQKT*RASRYLEMPCW
Trigger: CCAGCAGGGCATCTCTAAGTACCTGGATGCCCTCAATGTCTTTTGCCGTGCTAGTACGTTCCTCACAGATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS CAA 72 bp AAGTTTGCAGCCCCAGCACTGAGTTCCATGAGCATCTaGGCAATCTCGGGCTTTATGGCTGAGGTCAATCTG +
Preference number: 6 (lower is better)
Translates to: KFAAPALSSMSI*AISGFMAEVNL
Trigger: CAGATTGACCTCAGCCATAAAGCCCGAGATTGCCAAGATGCTCATGGAACTCAGTGCTGGGGCTGCAAACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS CAA 90 bp GCTTCCTTGATGAGCTGTAACATGGTATGCGTCTTAAGCTTCAGATaGTCGGCAGCCGACTCATTAAAGGAGACCCCCTTCAGGAAGTGC +
Preference number: 6 (lower is better)
Translates to: ASLMSCNMVCVLSFR*SAADSLKETPFRKC
Trigger: GCACTTCCTGAAGGGGGTCTCCTTTAATGAGTCGGCTGCCGACAATCTGAAGCTTAAGACGCATACCATGTTACAGCTCATCAAGGAAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 72 bp GAGGATTTGCTTCCATTTCCAGAAGGCAGGTCAGCCTaGTTCCCAAAATCGCAGATATCCCTTTGCAGCTGG +
Preference number: 6 (lower is better)
Translates to: EDLLPFPEGRSA*FPKSQISLCSW
Trigger: CCAGCTGCAAAGGGATATCTGCGATTTTGGGAATCAGGCTGACCTGCCTTCTGGAAATGGAAGCAAATCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS GCA 72 bp TCAGTTTGGAGAAAGTCTTCTGCAGTCCCGAGGATTTaGTTCCATTTCCAGAAGGCAGGTCAGCCTGATTCC +
Preference number: 6 (lower is better)
Translates to: SVWRKSSAVPRI*FHFQKAGQPDS
Trigger: GGAATCAGGCTGACCTGCCTTCTGGAAATGGAAGCAAATCCTCGGGACTGCAGAAGACTTTCTCCAAACTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CCA 72 bp TGGACTTTCTGCAAGGCGTGGGTCAAAAACTGGAAATaGACTTGCACCACTGTCAAGAAACATCGCCCCAAC +
Preference number: 6 (lower is better)
Translates to: WTFCKAWVKNWK*TCTTVKKHRPN
Trigger: GTTGGGGCGATGTTTCTTGACAGTGGTGCAAGTCCATTTCCAGTTTTTGACCCACGCCTTGCAGAAAGTCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS CAA 72 bp TTTCTGCAAGGCGTGGGTCAAAAACTGGAAATGGACTaGCACCACTGTCAAGAAACATCGCCCCAACACCTC +
Preference number: 6 (lower is better)
Translates to: FLQGVGQKLEMD*HHCQETSPQHL
Trigger: GAGGTGTTGGGGCGATGTTTCTTGACAGTGGTGCAAGTCCATTTCCAGTTTTTGACCCACGCCTTGCAGAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS TCA 72 bp TTCCATGAGCATCTTGGCAATCTCGGGCTTTATGGCTaGGGTCAATCTGCTGGCTGCTTCCATTACATGTTC +
Preference number: 6 (lower is better)
Translates to: FHEHLGNLGLYG*GQSAGCFHYMF
Trigger: GAACATGTAATGGAAGCAGCCAGCAGATTGACCTCAGCCATAAAGCCCGAGATTGCCAAGATGCTCATGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS TCA 72 bp GTGTGCTGCCAGAGTTGGTGCATGACACTTTCTTTGTaGACCGGGATGTCAGTTTGGAGAAAGTCTTCTGCA +
Preference number: 6 (lower is better)
Translates to: VCCQSWCMTLSL*TGMSVWRKSSA
Trigger: TGCAGAAGACTTTCTCCAAACTGACATCCCGGTTCACAAAGAAAGTGTCATGCACCAACTCTGGCAGCACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 72 bp GCAGGAAGTTCTCACGTCTCTCCAGGAGAAAGCCATTaGCCATTGGATTACTGGAATTCTGAGACGACTGTG +
Preference number: 6 (lower is better)
Translates to: AGSSHVSPGESH*PLDYWNSETTV
Trigger: CACAGTCGTCTCAGAATTCCAGTAATCCAATGGTCAATGGCTTTCTCCTGGAGAGACGTGAGAACTTCCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS GCA 72 bp TCTTGGCAATCTCGGGCTTTATGGCTGAGGTCAATCTaGTGGCTGCTTCCATTACATGTTCCTGCACATCTT +
Preference number: 6 (lower is better)
Translates to: SWQSRALWLRSI*WLLPLHVPAHL
Trigger: AAGATGTGCAGGAACATGTAATGGAAGCAGCCAGCAGATTGACCTCAGCCATAAAGCCCGAGATTGCCAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
CDS CCA 72 bp TGGTCACGGTTTGGCCAGGTGTTATTTCTAGGTCCCTaGGGCTTCTGTCCCAAAACTTCTGACATCATATTG +
Preference number: 6 (lower is better)
Translates to: WSRFGQVLFLGP*GFCPKTSDIIL
Trigger: CAATATGATGTCAGAAGTTTTGGGACAGAAGCCCCAGGGACCTAGAAATAACACCTGGCCAAACCGTGACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000205264.2
ENSMUST00000206399.2
CDS CAA 72 bp CTCAGGAATTGCTGCACTTTGAGAACAAAAGAGTTGTaGGACTTCGATTCCTGCCAGGCATCCATCACAGCC +
Preference number: 6 (lower is better)
Translates to: LRNCCTLRTKEL*DFDSCQASITA
Trigger: GGCTGTGATGGATGCCTGGCAGGAATCGAAGTCCAACAACTCTTTTGTTCTCAAAGTGCAGCAATTCCTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CAA 72 bp ATGAGCTGTAACATGGTATGCGTCTTAAGCTTCAGATaGTCGGCAGCCGACTCATTAAAGGAGACCCCCTTC +
Preference number: 6 (lower is better)
Translates to: MSCNMVCVLSFR*SAADSLKETPF
Trigger: GAAGGGGGTCTCCTTTAATGAGTCGGCTGCCGACAATCTGAAGCTTAAGACGCATACCATGTTACAGCTCAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CAA 90 bp CCAGAGTTGGTGCATGACACTTTCTTTGTGAACCGGGATGTCAGTTaGGAGAAAGTCTTCTGCAGTCCCGAGGATTTGCTTCCATTTCCA +
Preference number: 6 (lower is better)
Translates to: PELVHDTFFVNRDVS*EKVFCSPEDLLPFP
Trigger: TGGAAATGGAAGCAAATCCTCGGGACTGCAGAAGACTTTCTCCAAACTGACATCCCGGTTCACAAAGAAAGTGTCATGCACCAACTCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 72 bp GCAGGATCTTCCTTTAAGCACCATGTGGATGGGACTTaGACCACAATTCTGGAACCTTCAAGACTGATCTGG +
Preference number: 6 (lower is better)
Translates to: AGSSFKHHVDGT*TTILEPSRLIW
Trigger: CCAGATCAGTCTTGAAGGTTCCAGAATTGTGGTTCAAGTCCCATCCACATGGTGCTTAAAGGAAGATCCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CAA 72 bp GTGCTCAGGAATTGCTGCACTTTGAGAACAAAAGAGTaGTTGGACTTCGATTCCTGCCAGGCATCCATCACA +
Preference number: 6 (lower is better)
Translates to: VLRNCCTLRTKE*LDFDSCQASIT
Trigger: TGTGATGGATGCCTGGCAGGAATCGAAGTCCAACAACTCTTTTGTTCTCAAAGTGCAGCAATTCCTGAGCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CAA 72 bp GTGCATGACACTTTCTTTGTGAACCGGGATGTCAGTTaGGAGAAAGTCTTCTGCAGTCCCGAGGATTTGCTT +
Preference number: 6 (lower is better)
Translates to: VHDTFFVNRDVS*EKVFCSPEDLL
Trigger: AAGCAAATCCTCGGGACTGCAGAAGACTTTCTCCAAACTGACATCCCGGTTCACAAAGAAAGTGTCATGCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 72 bp AGCTCTTTTAGCTGGTGCTCAGGAATTGCTGCACTTTaGGAACAAAAGAGTTGTTGGACTTCGATTCCTGCC +
Preference number: 6 (lower is better)
Translates to: SSFSWCSGIAAL*EQKSCWTSIPA
Trigger: GGCAGGAATCGAAGTCCAACAACTCTTTTGTTCTCAAAGTGCAGCAATTCCTGAGCACCAGCTAAAAGAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 72 bp GTTTTTGGAATAGTGTGTGCTGCCAGAGTTGGTGCATaGCACTTTCTTTGTGAACCGGGATGTCAGTTTGGA +
Preference number: 6 (lower is better)
Translates to: VFGIVCAARVGA*HFLCEPGCQFG
Trigger: TCCAAACTGACATCCCGGTTCACAAAGAAAGTGTCATGCACCAACTCTGGCAGCACACACTATTCCAAAAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CAA 72 bp CAATGGCCTTTGGGTTTAGATGGAAGCCAGCTTTCATaGCATATTCACAGTGGCCTAAGCTTTCCAAAGCTA +
Preference number: 6 (lower is better)
Translates to: QWPLGLDGSQLS*HIHSGLSFPKL
Trigger: TAGCTTTGGAAAGCTTAGGCCACTGTGAATATGCAATGAAAGCTGGCTTCCATCTAAACCCAAAGGCCATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CAA 72 bp CTCTGTAACCGTGTATCAATATTATTGCCCATCATTTaGGCCCTTTCCTCTGAACACCCAGCTGTGAAGATG +
Preference number: 6 (lower is better)
Translates to: LCNRVSILLPII*ALSSEHPAVKM
Trigger: CATCTTCACAGCTGGGTGTTCAGAGGAAAGGGCCAAAATGATGGGCAATAATATTGATACACGGTTACAGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 72 bp ATTGACCATTGGATTACTGGAATTCTGAGACGACTGTaGAGGGTCTGTAGTCCTAGGGAAGTTACCAATGTT +
Preference number: 6 (lower is better)
Translates to: IDHWITGILRRL*RVCSPREVTNV
Trigger: AACATTGGTAACTTCCCTAGGACTACAGACCCTTCACAGTCGTCTCAGAATTCCAGTAATCCAATGGTCAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 72 bp ATGGGACTTGAACCACAATTCTGGAACCTTCAAGACTaGTCTGGGGTGCATAGGCTTCTTTATTTTCAATCT +
Preference number: 6 (lower is better)
Translates to: MGLEPQFWNLQD*SGVHRLLYFQS
Trigger: AGATTGAAAATAAAGAAGCCTATGCACCCCAGATCAGTCTTGAAGGTTCCAGAATTGTGGTTCAAGTCCCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS GCA 72 bp TGTTCAAAATGCTCTGTAACCGTGTATCAATATTATTaGCCATCATTTTGGCCCTTTCCTCTGAACACCCAG +
Preference number: 6 (lower is better)
Translates to: CSKCSVTVYQYY*PSFWPFPLNTQ
Trigger: CTGGGTGTTCAGAGGAAAGGGCCAAAATGATGGGCAATAATATTGATACACGGTTACAGAGCATTTTGAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CAA 90 bp AAGTTACCAATGTTCAAAATGCTCTGTAACCGTGTATCAATATTATaGCCCATCATTTTGGCCCTTTCCTCTGAACACCCAGCTGTGAAG +
Preference number: 6 (lower is better)
Translates to: KLPMFKMLCNRVSIL*PIILALSSEHPAVK
Trigger: CTTCACAGCTGGGTGTTCAGAGGAAAGGGCCAAAATGATGGGCAATAATATTGATACACGGTTACAGAGCATTTTGAACATTGGTAACTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CAA 90 bp AACTTGCTTCAATGGCCTTTGGGTTTAGATGGAAGCCAGCTTTCATaGCATATTCACAGTGGCCTAAGCTTTCCAAAGCTATTTTATAAG +
Preference number: 6 (lower is better)
Translates to: NLLQWPLGLDGSQLS*HIHSGLSFPKLFYK
Trigger: CTTATAAAATAGCTTTGGAAAGCTTAGGCCACTGTGAATATGCAATGAAAGCTGGCTTCCATCTAAACCCAAAGGCCATTGAAGCAAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CAA 90 bp TTCAAAATGCTCTGTAACCGTGTATCAATATTATTGCCCATCATTTaGGCCCTTTCCTCTGAACACCCAGCTGTGAAGATGTTTTTGGAA +
Preference number: 6 (lower is better)
Translates to: FKMLCNRVSILLPII*ALSSEHPAVKMFLE
Trigger: TTCCAAAAACATCTTCACAGCTGGGTGTTCAGAGGAAAGGGCCAAAATGATGGGCAATAATATTGATACACGGTTACAGAGCATTTTGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS TCA 72 bp ATCAATATTATTGCCCATCATTTTGGCCCTTTCCTCTaGACACCCAGCTGTGAAGATGTTTTTGGAATAGTG +
Preference number: 6 (lower is better)
Translates to: INIIAHHFGPFL*TPSCEDVFGIV
Trigger: CACTATTCCAAAAACATCTTCACAGCTGGGTGTTCAGAGGAAAGGGCCAAAATGATGGGCAATAATATTGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2
CDS CAA 72 bp ATGTTCAAAATGCTCTGTAACCGTGTATCAATATTATaGCCCATCATTTTGGCCCTTTCCTCTGAACACCCA +
Preference number: 6 (lower is better)
Translates to: MFKMLCNRVSIL*PIILALSSEHP
Trigger: TGGGTGTTCAGAGGAAAGGGCCAAAATGATGGGCAATAATATTGATACACGGTTACAGAGCATTTTGAACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000085592.6
ENSMUST00000108074.8
ENSMUST00000206399.2