Pregenerated sensors for GAR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028010Ensembl transcript IDs: ENSMUST00000029643.15, ENSMUST00000134174.8
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGCAGAGCTAACTGCCCTGCTCCCCTTGTTTCTACGCGATGCTGCTaGCTCAGCTCCACTGACGGAATGGCCTCCTCAAGACTGCTCCAG | + |
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Preference number: 1 (lower is better) Translates to: SRANCPAPLVSTRCC*LSSTDGMASSRLLQ Trigger: CTGGAGCAGTCTTGAGGAGGCCATTCCGTCAGTGGAGCTGAGTCAGCAGCATCGCGTAGAAACAAGGGGAGCAGGGCAGTTAGCTCTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029643.15 ENSMUST00000134174.8 |
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| 3UTR TCA 90 bp | CACCCACAGAGTGCCAGGTTCTGTACAAAGCGGGGTTCTCCTCTCTaGGCAGAGCTAACTGCCCTGCTCCCCTTGTTTCTACGCGATGCT | + |
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Preference number: 1 (lower is better) Translates to: HPQSARFCTKRGSPL*AELTALLPLFLRDA Trigger: AGCATCGCGTAGAAACAAGGGGAGCAGGGCAGTTAGCTCTGCTCAGAGAGGAGAACCCCGCTTTGTACAGAACCTGGCACTCTGTGGGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029643.15 ENSMUST00000134174.8 |
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| 3UTR-3UTR CCA 90 bp | AGTCCTGTCTTCTCTAAGCACCCACAGAGTGCCAGGTTCTGTACAAAGCGGGGTGCTCCACTGACGGAATaGCCTCCTCAAGACTGCTCC | + |
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Preference number: 2 (lower is better) Translates to: SPVFSKHPQSARFCTKRGAPLTE*PPQDCS Trigger: GGAGCAGTCTTGAGGAGGCCATTCCGTCAGTGGAGC...ACCCCGCTTTGTACAGAACCTGGCACTCTGTGGGTGCTTAGAGAAGACAGGACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029643.15 ENSMUST00000134174.8 |
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| 3UTR TCA 72 bp | AACTGCCCTGCTCCCCTTGTTTCTACGCGATGCTGCTaGCTCAGCTCCACTGACGGAATGGCCTCCTCAAGA | + |
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Preference number: 3 (lower is better) Translates to: NCPAPLVSTRCC*LSSTDGMASSR Trigger: TCTTGAGGAGGCCATTCCGTCAGTGGAGCTGAGTCAGCAGCATCGCGTAGAAACAAGGGGAGCAGGGCAGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029643.15 ENSMUST00000134174.8 |
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| 3UTR CCA 72 bp | CTACGCGATGCTGCTGACTCAGCTCCACTGACGGAATaGCCTCCTCAAGACTGCTCCAGACACAGACGTCAA | + |
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Preference number: 3 (lower is better) Translates to: LRDAADSAPLTE*PPQDCSRHRRQ Trigger: TTGACGTCTGTGTCTGGAGCAGTCTTGAGGAGGCCATTCCGTCAGTGGAGCTGAGTCAGCAGCATCGCGTAG 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029643.15 ENSMUST00000134174.8 |
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| 3UTR TCA 72 bp | CCTTGTTTCTACGCGATGCTGCTGACTCAGCTCCACTaGCGGAATGGCCTCCTCAAGACTGCTCCAGACACA | + |
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Preference number: 3 (lower is better) Translates to: PCFYAMLLTQLH*RNGLLKTAPDT Trigger: TGTGTCTGGAGCAGTCTTGAGGAGGCCATTCCGTCAGTGGAGCTGAGTCAGCAGCATCGCGTAGAAACAAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029643.15 ENSMUST00000134174.8 |
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| 3UTR TCA 72 bp | AGTGCCAGGTTCTGTACAAAGCGGGGTTCTCCTCTCTaGGCAGAGCTAACTGCCCTGCTCCCCTTGTTTCTA | + |
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Preference number: 3 (lower is better) Translates to: SARFCTKRGSPL*AELTALLPLFL Trigger: TAGAAACAAGGGGAGCAGGGCAGTTAGCTCTGCTCAGAGAGGAGAACCCCGCTTTGTACAGAACCTGGCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000029643.15 ENSMUST00000134174.8 |
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| CDS-3UTR CCA 90 bp | TCAAGACTGCTCCAGACACAGACGTCAACCATAGCAGAAGCAGGCCACGCAGCGCCGCCCCCTCGGAAGTaGTTGTTGCTGCCGCCGCCA | + |
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Preference number: 4 (lower is better) Translates to: SRLLQTQTSTIAEAGHAAPPPRK*LLLPPP Trigger: TGGCGGCGGCAGCAACAACCACTTCCGAGGGGGCGG...CGCTGCGTGGCCTGCTTCTGCTATGGTTGACGTCTGTGTCTGGAGCAGTCTTGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029643.15 |
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| CDS-3UTR CCA 90 bp | CTAACTGCCCTGCTCCCCTTGTTTCTACGCGATGCTGCTGACTCAGCTCCACTGCACCGCCGCCACCTCTaGGAGGTCCTTTCTCACCAG | + |
|
Preference number: 4 (lower is better) Translates to: LTALLPLFLRDAADSAPLHRRHL*EVLSHQ Trigger: CTGGTGAGAAAGGACCTCCCAGAGGTGGCGGCGGTG...CAGTGGAGCTGAGTCAGCAGCATCGCGTAGAAACAAGGGGAGCAGGGCAGTTAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029643.15 ENSMUST00000134174.8 |
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| CDS-3UTR GCA 90 bp | AAGACTGCTCCAGACACAGACGTCAACCATAGCAGAAGCAGGCCACGCAGCGGGCGAGGCAGAAACCTCTaGAGCGGCAGCAGCTTGTAT | + |
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Preference number: 4 (lower is better) Translates to: KTAPDTDVNHSRSRPRSGRGRNL*SGSSLY Trigger: ATACAAGCTGCTGCCGCTGCAGAGGTTTCTGCCTCG...CCCGCTGCGTGGCCTGCTTCTGCTATGGTTGACGTCTGTGTCTGGAGCAGTCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029643.15 ENSMUST00000134174.8 |
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| CDS-3UTR GCA 90 bp | ACTGCCCTGCTCCCCTTGTTTCTACGCGATGCTGCTGACTCAGCTCCACTGACGCGAGGCAGAAACCTCTaGAGCGGCAGCAGCTTGTAT | + |
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Preference number: 4 (lower is better) Translates to: TALLPLFLRDAADSAPLTRGRNL*SGSSLY Trigger: ATACAAGCTGCTGCCGCTGCAGAGGTTTCTGCCTCG...CGTCAGTGGAGCTGAGTCAGCAGCATCGCGTAGAAACAAGGGGAGCAGGGCAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029643.15 ENSMUST00000134174.8 |
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| CDS-3UTR TCA 90 bp | ATAGCAGAAGCAGGCCACGCAGCGGGAACACAAGTGGTCAGGTCTGCCAACTGGCTTCACAGGGATGCATaGATTCTCCTAACAAGACGA | + |
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Preference number: 4 (lower is better) Translates to: IAEAGHAAGTQVVRSANWLHRDA*ILLTRR Trigger: TCGTCTTGTTAGGAGAATTCATGCATCCCTGTGAAG...CCAGTTGGCAGACCTGACCACTTGTGTTCCCGCTGCGTGGCCTGCTTCTGCTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029643.15 |
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| CDS-3UTR CCA 90 bp | AAGACTGCTCCAGACACAGACGTCAACCATAGCAGAAGCAGGCCACGCAGCGGGCGGCAGCAGCTTGTATaGGTCTATATAGAACTTCTG | + |
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Preference number: 4 (lower is better) Translates to: KTAPDTDVNHSRSRPRSGRQQLV*VYIELL Trigger: CAGAAGTTCTATATAGACCCATACAAGCTGCTGCCG...CCCGCTGCGTGGCCTGCTTCTGCTATGGTTGACGTCTGTGTCTGGAGCAGTCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029643.15 ENSMUST00000134174.8 |
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| CDS-3UTR CCA 90 bp | ACTGCCCTGCTCCCCTTGTTTCTACGCGATGCTGCTGACTCAGCTCCACTGACGCGGCAGCAGCTTGTATaGGTCTATATAGAACTTCTG | + |
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Preference number: 4 (lower is better) Translates to: TALLPLFLRDAADSAPLTRQQLV*VYIELL Trigger: CAGAAGTTCTATATAGACCCATACAAGCTGCTGCCG...CGTCAGTGGAGCTGAGTCAGCAGCATCGCGTAGAAACAAGGGGAGCAGGGCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029643.15 ENSMUST00000134174.8 |
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| CDS-3UTR CCA 90 bp | CCTGTCTTCTCTAAGCACCCACAGAGTGCCAGGTTCTGTACAAAGCGGGGTTCTCAAGACGACACGTTCTaGAGGCCCTTGATCTTGAAA | + |
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Preference number: 4 (lower is better) Translates to: PVFSKHPQSARFCTKRGSQDDTF*RPLILK Trigger: TTTCAAGATCAAGGGCCTCCAGAACGTGTCGTCTTG...AGAACCCCGCTTTGTACAGAACCTGGCACTCTGTGGGTGCTTAGAGAAGACAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029643.15 |
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| CDS-3UTR CAA 90 bp | AAAGCGGGGTTCTCCTCTCTGAGCAGAGCTAACTGCCCTGCTCCCCTTGTTTCTTGGAGGCCCTTGATCTaGAAATTTATTAAAGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: KAGFSSLSRANCPAPLVSWRPLI*KFIKAS Trigger: GGAGGCTTTAATAAATTTCAAGATCAAGGGCCTCCA...AGAAACAAGGGGAGCAGGGCAGTTAGCTCTGCTCAGAGAGGAGAACCCCGCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029643.15 |
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| CDS-3UTR CAA 90 bp | AACCATAGCAGAAGCAGGCCACGCAGCGGGAACACAAGTGGTCAGGTCTGCCAAACGTTCTGGAGGCCCTaGATCTTGAAATTTATTAAA | + |
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Preference number: 5 (lower is better) Translates to: NHSRSRPRSGNTSGQVCQTFWRP*ILKFIK Trigger: TTTAATAAATTTCAAGATCAAGGGCCTCCAGAACGT...TTGGCAGACCTGACCACTTGTGTTCCCGCTGCGTGGCCTGCTTCTGCTATGGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029643.15 |
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