RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GAPDHS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000061099

Ensembl transcript IDs: ENSMUST00000074758.6, ENSMUST00000182067.8, ENSMUST00000182634.8

Found 69 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CTGGTCCTCTGTGTAAGCAAGGATGCCAGCCAAAGGTCCCTTGGCTaGAGCTTTCACAGCCTCCGTGATAGCCGAGTAAGAAGCAGGCTT +
Preference number: 1 (lower is better)
Translates to: LVLCVSKDASQRSLG*SFHSLRDSRVRSRL
Trigger: AAGCCTGCTTCTTACTCGGCTATCACGGAGGCTGTGAAAGCTGCAGCCAAGGGACCTTTGGCTGGCATCCTTGCTTACACAGAGGACCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182067.8
3UTR-3UTR GCA 90 bp GTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTTTGTCAGGAACGCGAGGTaGGCAGGGGAGCAAGGAGGG +
Preference number: 2 (lower is better)
Translates to: VEAEVRNARCAGEQGGAFVRNAR*AGEQGG
Trigger: CCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGAC...AAAGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000182067.8
ENSMUST00000182634.8
3UTR GCA 72 bp TGTGTAAGCAAGGATGCCAGCCAAAGGTCCCTTGGCTaGAGCTTTCACAGCCTCCGTGATAGCCGAGTAAGA +
Preference number: 3 (lower is better)
Translates to: CVSKDASQRSLG*SFHSLRDSRVR
Trigger: TCTTACTCGGCTATCACGGAGGCTGTGAAAGCTGCAGCCAAGGGACCTTTGGCTGGCATCCTTGCTTACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182067.8
3UTR-3UTR CAA 90 bp GCTAAACATGTAGCGGAGGAGGTCGACCACTCGGTTACTGTAGCCATATTCGTTGTTTTTATTTCATTGTaGACCCGGTGGCGGCGCCTT +
Preference number: 3 (lower is better)
Translates to: AKHVAEEVDHSVTVAIFVVFISL*TRWRRL
Trigger: AAGGCGCCGCCACCGGGTCAACAATGAAATAAAAAC...AACGAATATGGCTACAGTAACCGAGTGGTCGACCTCCTCCGCTACATGTTTAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000182067.8
CDS-3UTR TCA 90 bp AGTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTTCGGGGGAGGGTGCAGTaGCCACCACACGCCTGGCAC +
Preference number: 4 (lower is better)
Translates to: SGSRSQEREVRRGARRGLRGRVQ*PPHAWH
Trigger: GTGCCAGGCGTGTGGTGGTCACTGCACCCTCCCCCG...AAGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCACT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR TCA 90 bp GAGTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTGGGATGATGTTTTGGTaGGCGCCGCGGCCACCTCGC +
Preference number: 4 (lower is better)
Translates to: EWKPKSGTRGAQGSKEGPGMMFW*APRPPR
Trigger: GCGAGGTGGCCGCGGCGCTCACCAAAACATCATCCC...AGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCACTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000182067.8
ENSMUST00000182634.8
CDS-3UTR CCA 90 bp TTGAGTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCGGCGGCGGTGGCGGTaGCTGTTCTTCAACCGTGGG +
Preference number: 4 (lower is better)
Translates to: LSGSRSQEREVRRGARRGRRRWR*LFFNRG
Trigger: CCCACGGTTGAAGAACAGCCACCGCCACCGCCGCCG...GCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCACTCAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR TCA 90 bp GTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTTTGGGATGATGTTTTGGTaGGCGCCGCGGCCACCTCGC +
Preference number: 4 (lower is better)
Translates to: VEAEVRNARCAGEQGGAFGMMFW*APRPPR
Trigger: GCGAGGTGGCCGCGGCGCTCACCAAAACATCATCCC...AAAGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000182067.8
ENSMUST00000182634.8
CDS-3UTR CCA 90 bp TTGAGTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCACATGGGCATGGGCATaGGCATGGGCATCGGTCCCG +
Preference number: 4 (lower is better)
Translates to: LSGSRSQEREVRRGARRGTWAWA*AWASVP
Trigger: CGGGACCGATGCCCATGCCCATGCCCATGCCCATGT...GCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCACTCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR GCA 90 bp TGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTTTTTGCATCGGGGGAGGGTaGAGTGACCACCACACGCCT +
Preference number: 4 (lower is better)
Translates to: WKPKSGTRGAQGSKEGPFCIGGG*SDHHTP
Trigger: AGGCGTGTGGTGGTCACTGCACCCTCCCCCGATGCA...AAAAGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR CCA 90 bp TTGAGTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCACAGGGCATGGGCATaGACATGGGCATGGGCATGG +
Preference number: 4 (lower is better)
Translates to: LSGSRSQEREVRRGARRGHRAWA*TWAWAW
Trigger: CCATGCCCATGCCCATGTCCATGCCCATGCCCTGTG...GCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCACTCAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR CCA 90 bp AGTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTTGCATGGACATGGGCATaGGCATGGGCATGGGCATCG +
Preference number: 4 (lower is better)
Translates to: SGSRSQEREVRRGARRGLAWTWA*AWAWAS
Trigger: CGATGCCCATGCCCATGCCCATGCCCATGTCCATGC...AAGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR TCA 90 bp GTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTTTGGTCAGGTCCACAACTaGCACGTTTGGGGTTGGCAC +
Preference number: 4 (lower is better)
Translates to: VEAEVRNARCAGEQGGAFGQVHN*HVWGWH
Trigger: GTGCCAACCCCAAACGTGTCAGTTGTGGACCTGACC...AAAGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR GCA 90 bp AGTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTTCATGACAAACATGGGTaGATCGGGGGAGGGTGCAGT +
Preference number: 4 (lower is better)
Translates to: SGSRSQEREVRRGARRGLHDKHG*IGGGCS
Trigger: ACTGCACCCTCCCCCGATGCACCCATGTTTGTCATG...AAGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR CCA 90 bp TTGAGTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCCGAAGCTGCCTCGATaGACAGATAGACGCCTGTAC +
Preference number: 4 (lower is better)
Translates to: LSGSRSQEREVRRGARRGPKLPR*TDRRLY
Trigger: GTACAGGCGTCTATCTGTCCATCGAGGCAGCTTCGG...GCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCACTCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR CCA 90 bp AGTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTTCAGCCAAAGGTCCCTTaGCTGCAGCTTTCACAGCCT +
Preference number: 4 (lower is better)
Translates to: SGSRSQEREVRRGARRGLQPKVP*LQLSQP
Trigger: AGGCTGTGAAAGCTGCAGCCAAGGGACCTTTGGCTG...AAGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR TCA 90 bp TGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTTTTACGCCTGGCACCAGATaGAATATGTGCCGAAGCTGC +
Preference number: 4 (lower is better)
Translates to: WKPKSGTRGAQGSKEGPFTPGTR*NMCRSC
Trigger: GCAGCTTCGGCACATATTTCATCTGGTGCCAGGCGT...AAAAGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR TCA 90 bp GTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTTTTCGCCAGTCCTTCTTTaGTGGCCCATCCACTGTCTT +
Preference number: 4 (lower is better)
Translates to: VEAEVRNARCAGEQGGAFSPVLL*WPIHCL
Trigger: AAGACAGTGGATGGGCCATCAAAGAAGGACTGGCGA...AAAGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000182067.8
ENSMUST00000182634.8
CDS-3UTR GCA 90 bp AGTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTTCTGTGTAAGCAAGGATaGCAGCCAAAGGTCCCTTGG +
Preference number: 4 (lower is better)
Translates to: SGSRSQEREVRRGARRGLLCKQG*QPKVPW
Trigger: CCAAGGGACCTTTGGCTGGCATCCTTGCTTACACAG...AAGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR CCA 90 bp TGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTTTTTCTGATCACAGGGCATaGGCATGGACATGGGCATGG +
Preference number: 4 (lower is better)
Translates to: WKPKSGTRGAQGSKEGPFSDHRA*AWTWAW
Trigger: CCATGCCCATGTCCATGCCCATGCCCTGTGATCAGA...AAAAGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR CCA 90 bp GTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTTTAGCCCCAGTGGACGATaGGATGATGTTTTGGTGAGC +
Preference number: 4 (lower is better)
Translates to: VEAEVRNARCAGEQGGAFSPSGR*DDVLVS
Trigger: GCTCACCAAAACATCATCCCATCGTCCACTGGGGCT...AAAGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000182067.8
ENSMUST00000182634.8
CDS-3UTR CCA 90 bp AGTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTTAGCCCCAGTGGACGATaGGATGATGTTTTGGTGAGC +
Preference number: 4 (lower is better)
Translates to: SGSRSQEREVRRGARRGLSPSGR*DDVLVS
Trigger: GCTCACCAAAACATCATCCCATCGTCCACTGGGGCT...AAGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000182067.8
ENSMUST00000182634.8
CDS-3UTR CCA 90 bp AGTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTTCTCTTCAAACTTGTCTaGCTCTATCTGGGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: SGSRSQEREVRRGARRGLLFKLV*LYLGWR
Trigger: CCTCCACCCCAGATAGAGCCAGACAAGTTTGAAGAG...AAGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR GCA 90 bp GTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTTTGAATGGGTCATTCACTaGTACCACCCTAATGCCCTT +
Preference number: 4 (lower is better)
Translates to: VEAEVRNARCAGEQGGAFEWVIH*YHPNAL
Trigger: AAGGGCATTAGGGTGGTAGCAGTGAATGACCCATTC...AAAGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR CCA 90 bp TGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTTTTTGTAGGAATGGACTGTaGTCATTAGCCCTTCCACGA +
Preference number: 4 (lower is better)
Translates to: WKPKSGTRGAQGSKEGPFCRNGL*SLALPR
Trigger: TCGTGGAAGGGCTAATGACCACAGTCCATTCCTACA...AAAAGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR TCA 90 bp TGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTTTTATCCCGAAGTTTTCATaGATAACCTTGGCGAGAGGA +
Preference number: 4 (lower is better)
Translates to: WKPKSGTRGAQGSKEGPFIPKFS*ITLARG
Trigger: TCCTCTCGCCAAGGTTATTCATGAAAACTTCGGGAT...AAAAGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000182067.8
ENSMUST00000182634.8
CDS-3UTR CCA 90 bp AGTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTTTTCTGGATCAATGAATaGGTCATTCACTGCTACCAC +
Preference number: 4 (lower is better)
Translates to: SGSRSQEREVRRGARRGLFWINE*VIHCYH
Trigger: GTGGTAGCAGTGAATGACCCATTCATTGATCCAGAA...AAGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR TCA 90 bp TGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTTTTTGTATTCTGGATCAATaGATGGGTCATTCACTGCTA +
Preference number: 4 (lower is better)
Translates to: WKPKSGTRGAQGSKEGPFCILDQ*MGHSLL
Trigger: TAGCAGTGAATGACCCATTCATTGATCCAGAATACA...AAAAGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR CCA 90 bp GCGCATTCTCGTTTTTATTTCATTGTTGACCCGGTGGCGGCGCCTTTGAGTGGATTGTCTGGCTCTATCTaGGGTGGAGGAGGAGGAGGA +
Preference number: 4 (lower is better)
Translates to: AHSRFYFIVDPVAAPLSGLSGSI*GGGGGG
Trigger: TCCTCCTCCTCCTCCACCCCAGATAGAGCCAGACAA...TCCACTCAAAGGCGCCGCCACCGGGTCAACAATGAAATAAAAACGAGAATGCGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR CCA 90 bp CATTCTCGTTTTTATTTCATTGTTGACCCGGTGGCGGCGCCTTTGAGTGGAAGCAGTAAGAAGCAGGCTTaGCCAGGCGGCAGGTCAGGT +
Preference number: 4 (lower is better)
Translates to: HSRFYFIVDPVAAPLSGSSKKQA*PGGRSG
Trigger: ACCTGACCTGCCGCCTGGCCAAGCCTGCTTCTTACT...GCTTCCACTCAAAGGCGCCGCCACCGGGTCAACAATGAAATAAAAACGAGAATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR TCA 90 bp GTGTTACTTCTCTCGGCTAAACATGTAGCGGAGGAGGTCGACCACTCGGTTACTCCATCCACTGTCTTCTaGGTGGCATTAGCCCTTCCA +
Preference number: 4 (lower is better)
Translates to: VLLLSAKHVAEEVDHSVTPSTVF*VALALP
Trigger: TGGAAGGGCTAATGCCACTCAGAAGACAGTGGATGG...AGTAACCGAGTGGTCGACCTCCTCCGCTACATGTTTAGCCGAGAGAAGTAACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182067.8
CDS-3UTR CCA 90 bp GCGCATTCTCGTTTTTATTTCATTGTTGACCCGGTGGCGGCGCCTTTGAGTGGAGCTGTTCTTCAACCGTaGGTGGTGGATCCTCAACCT +
Preference number: 4 (lower is better)
Translates to: AHSRFYFIVDPVAAPLSGAVLQP*VVDPQP
Trigger: AGGTTGAGGATCCACCACCCACGGTTGAAGAACAGC...TCCACTCAAAGGCGCCGCCACCGGGTCAACAATGAAATAAAAACGAGAATGCGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR CCA 90 bp CATTCTCGTTTTTATTTCATTGTTGACCCGGTGGCGGCGCCTTTGAGTGGAAGCTGTCAGCTCTCTAGCTaGCTTTTGGAGTGGTGGGGG +
Preference number: 4 (lower is better)
Translates to: HSRFYFIVDPVAAPLSGSCQLSS*LLEWWG
Trigger: CCCCCACCACTCCAAAAGCCAGCTAGAGAGCTGACA...GCTTCCACTCAAAGGCGCCGCCACCGGGTCAACAATGAAATAAAAACGAGAATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR TCA 90 bp GCTAAACATGTAGCGGAGGAGGTCGACCACTCGGTTACTGTAGCCATATTCGTTTCGCCAGTCCTTCTTTaGTGGCCCATCCACTGTCTT +
Preference number: 4 (lower is better)
Translates to: AKHVAEEVDHSVTVAIFVSPVLL*WPIHCL
Trigger: AAGACAGTGGATGGGCCATCAAAGAAGGACTGGCGA...AACGAATATGGCTACAGTAACCGAGTGGTCGACCTCCTCCGCTACATGTTTAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182067.8
CDS-3UTR TCA 90 bp GCGCATTCTCGTTTTTATTTCATTGTTGACCCGGTGGCGGCGCCTTTGAGTGGAATCCCGAAGTTTTCATaGATAACCTTGGCGAGAGGA +
Preference number: 4 (lower is better)
Translates to: AHSRFYFIVDPVAAPLSGIPKFS*ITLARG
Trigger: TCCTCTCGCCAAGGTTATTCATGAAAACTTCGGGAT...TCCACTCAAAGGCGCCGCCACCGGGTCAACAATGAAATAAAAACGAGAATGCGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000182067.8
ENSMUST00000182634.8
CDS-3UTR CAA 90 bp TTGAGTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCGATGGGATGATGTTTaGGTGAGCGCCGCGGCCACC +
Preference number: 5 (lower is better)
Translates to: LSGSRSQEREVRRGARRGRWDDV*VSAAAT
Trigger: GGTGGCCGCGGCGCTCACCAAAACATCATCCCATCG...GCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCACTCAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000182067.8
ENSMUST00000182634.8
CDS TCA 90 bp CTTCAACCGTGGGTGGTGGATCCTCAACCTTGGGTGGAGGTGGTCTaGTCACAGGGCATGGGCATGGACATGGGCATGGGCATGGGCATC +
Preference number: 5 (lower is better)
Translates to: LQPWVVDPQPWVEVV*SQGMGMDMGMGMGI
Trigger: GATGCCCATGCCCATGCCCATGTCCATGCCCATGCCCTGTGATCAGACCACCTCCACCCAAGGTTGAGGATCCACCACCCACGGTTGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074758.6
CDS TCA 90 bp CTTCAACCGTGGGTGGTGGATCCTCAACCTTGGGTGGAGGTGGTCTaGTCACAGGGCATGGGCATGGACATGGGCATGGGCATGGGCATG +
Preference number: 5 (lower is better)
Translates to: LQPWVVDPQPWVEVV*SQGMGMDMGMGMGM
Trigger: CATGCCCATGCCCATGCCCATGTCCATGCCCATGCCCTGTGATCAGACCACCTCCACCCAAGGTTGAGGATCCACCACCCACGGTTGAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS TCA 90 bp TGCATCGGGGGAGGGTGCAGTGACCACCACACGCCTGGCACCAGATaGAATATGTGCCGAAGCTGCCTCGATGGACAGATAGACGCCTGT +
Preference number: 5 (lower is better)
Translates to: CIGGGCSDHHTPGTR*NMCRSCLDGQIDAC
Trigger: ACAGGCGTCTATCTGTCCATCGAGGCAGCTTCGGCACATATTTCATCTGGTGCCAGGCGTGTGGTGGTCACTGCACCCTCCCCCGATGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000074758.6
ENSMUST00000182634.8
CDS CCA 90 bp CTGTTCTTCAACCGTGGGTGGTGGATCCTCAACCTTGGGTGGAGGTaGTCTGATCACAGGGCATGGGCATGGACATGGGCATGGGCATGG +
Preference number: 5 (lower is better)
Translates to: LFFNRGWWILNLGWR*SDHRAWAWTWAWAW
Trigger: CCATGCCCATGCCCATGTCCATGCCCATGCCCTGTGATCAGACCACCTCCACCCAAGGTTGAGGATCCACCACCCACGGTTGAAGAACAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074758.6
ENSMUST00000182634.8
CDS-3UTR CAA 90 bp TTGAGTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCTGGACAACAGTAACATaGGTAAGGACCACGTCACGT +
Preference number: 5 (lower is better)
Translates to: LSGSRSQEREVRRGARRGWTTVT*VRTTSR
Trigger: ACGTGACGTGGTCCTTACCAATGTTACTGTTGTCCA...GCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCACTCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR CAA 90 bp AGTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTTTTGCACTGGTACGTGTaGATCTCAAGGTTGTCCACA +
Preference number: 5 (lower is better)
Translates to: SGSRSQEREVRRGARRGLLHWYV*ISRLST
Trigger: TGTGGACAACCTTGAGATCAACACGTACCAGTGCAA...AAGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR CAA 90 bp AGTGGAAGCCGAAGTCAGGAACGCGAGGTGCGCAGGGGAGCAAGGAGGGGCCTTGTGGTACAGGATGCATaGCTGACAATGGTCATAGAG +
Preference number: 5 (lower is better)
Translates to: SGSRSQEREVRRGARRGLVVQDA*LTMVIE
Trigger: CTCTATGACCATTGTCAGCAATGCATCCTGTACCAC...AAGGCCCCTCCTTGCTCCCCTGCGCACCTCGCGTTCCTGACTTCGGCTTCCACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR CAA 90 bp GCGCATTCTCGTTTTTATTTCATTGTTGACCCGGTGGCGGCGCCTTTGAGTGGACTCTCTAGCTGGCTTTaGGAGTGGTGGGGGAGGGGG +
Preference number: 5 (lower is better)
Translates to: AHSRFYFIVDPVAAPLSGLSSWL*EWWGRG
Trigger: CCCCCTCCCCCACCACTCCAAAAGCCAGCTAGAGAG...TCCACTCAAAGGCGCCGCCACCGGGTCAACAATGAAATAAAAACGAGAATGCGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS-3UTR CAA 90 bp GCGCATTCTCGTTTTTATTTCATTGTTGACCCGGTGGCGGCGCCTTTGAGTGGACGATGGGATGATGTTTaGGTGAGCGCCGCGGCCACC +
Preference number: 5 (lower is better)
Translates to: AHSRFYFIVDPVAAPLSGRWDDV*VSAAAT
Trigger: GGTGGCCGCGGCGCTCACCAAAACATCATCCCATCG...TCCACTCAAAGGCGCCGCCACCGGGTCAACAATGAAATAAAAACGAGAATGCGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000182067.8
ENSMUST00000182634.8
CDS CCA 90 bp CCACACGCCTGGCACCAGATGAAATATGTGCCGAAGCTGCCTCGATaGACAGATAGACGCCTGTACACTCCACCACGTAGGGATTCCCTA +
Preference number: 5 (lower is better)
Translates to: PHAWHQMKYVPKLPR*TDRRLYTPPRRDSL
Trigger: TAGGGAATCCCTACGTGGTGGAGTGTACAGGCGTCTATCTGTCCATCGAGGCAGCTTCGGCACATATTTCATCTGGTGCCAGGCGTGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074758.6
ENSMUST00000182634.8
CDS-3UTR CAA 90 bp GCGCATTCTCGTTTTTATTTCATTGTTGACCCGGTGGCGGCGCCTTTGAGTGGAGGTGGATCCTCAACCTaGGGTGGAGGTGGTCTGATC +
Preference number: 5 (lower is better)
Translates to: AHSRFYFIVDPVAAPLSGGGSST*GGGGLI
Trigger: GATCAGACCACCTCCACCCAAGGTTGAGGATCCACC...TCCACTCAAAGGCGCCGCCACCGGGTCAACAATGAAATAAAAACGAGAATGCGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS CCA 90 bp GGATTCCCTATAGAGCTCCAGGGGATTTCTTTAGGGTCTTTGCACTaGTACGTGTTGATCTCAAGGTTGTCCACAACTAGTTGTCCATTC +
Preference number: 5 (lower is better)
Translates to: GFPIELQGISLGSLH*YVLISRLSTTSCPF
Trigger: GAATGGACAACTAGTTGTGGACAACCTTGAGATCAACACGTACCAGTGCAAAGACCCTAAAGAAATCCCCTGGAGCTCTATAGGGAATCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074758.6
ENSMUST00000182634.8
CDS CCA 72 bp GTGGCGGCGGCGGTGGCGGTGGCTGTTCTTCAACCGTaGGTGGTGGATCCTCAACCTTGGGTGGAGGTGGTC +
Preference number: 6 (lower is better)
Translates to: VAAAVAVAVLQP*VVDPQPWVEVV
Trigger: GACCACCTCCACCCAAGGTTGAGGATCCACCACCCACGGTTGAAGAACAGCCACCGCCACCGCCGCCGCCAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074758.6
ENSMUST00000182634.8
CDS CCA 72 bp CTTGGGTGGAGGTGGTCTGATCACAGGGCATGGGCATaGACATGGGCATGGGCATGGGCATCGGTCCCGCCG +
Preference number: 6 (lower is better)
Translates to: LGWRWSDHRAWA*TWAWAWASVPP
Trigger: CGGCGGGACCGATGCCCATGCCCATGCCCATGTCCATGCCCATGCCCTGTGATCAGACCACCTCCACCCAAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000074758.6
CDS CCA 72 bp CGGCGGCGGTGGCGGTGGCTGTTCTTCAACCGTGGGTaGTGGATCCTCAACCTTGGGTGGAGGTGGTCTGAT +
Preference number: 6 (lower is better)
Translates to: RRRWRWLFFNRG*WILNLGWRWSD
Trigger: ATCAGACCACCTCCACCCAAGGTTGAGGATCCACCACCCACGGTTGAAGAACAGCCACCGCCACCGCCGCCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074758.6
ENSMUST00000182634.8
CDS CCA 72 bp CGGCGGTGGCGGTGGCTGTTCTTCAACCGTGGGTGGTaGATCCTCAACCTTGGGTGGAGGTGGTCTGATCAC +
Preference number: 6 (lower is better)
Translates to: RRWRWLFFNRGW*ILNLGWRWSDH
Trigger: GTGATCAGACCACCTCCACCCAAGGTTGAGGATCCACCACCCACGGTTGAAGAACAGCCACCGCCACCGCCG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074758.6
ENSMUST00000182634.8
CDS CAA 90 bp GGTGGCGGTGGCTGTTCTTCAACCGTGGGTGGTGGATCCTCAACCTaGGGTGGAGGTGGTCTGATCACAGGGCATGGGCATGGACATGGG +
Preference number: 6 (lower is better)
Translates to: GGGGCSSTVGGGSST*GGGGLITGHGHGHG
Trigger: CCCATGTCCATGCCCATGCCCTGTGATCAGACCACCTCCACCCAAGGTTGAGGATCCACCACCCACGGTTGAAGAACAGCCACCGCCACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074758.6
ENSMUST00000182634.8
CDS CCA 72 bp CTCAACCTTGGGTGGAGGTGGTCTGATCACAGGGCATaGGCATGGACATGGGCATGGGCATGGGCATGGGCA +
Preference number: 6 (lower is better)
Translates to: LNLGWRWSDHRA*AWTWAWAWAWA
Trigger: TGCCCATGCCCATGCCCATGCCCATGTCCATGCCCATGCCCTGTGATCAGACCACCTCCACCCAAGGTTGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182634.8
CDS TCA 72 bp TTGGTGAGCGCCGCGGCCACCTCGCCAGTCCTTCTTTaGTGGCCCATCCACTGTCTTCTGAGTGGCTGTGTA +
Preference number: 6 (lower is better)
Translates to: LVSAAATSPVLL*WPIHCLLSGCV
Trigger: TACACAGCCACTCAGAAGACAGTGGATGGGCCATCAAAGAAGGACTGGCGAGGTGGCCGCGGCGCTCACCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074758.6
ENSMUST00000182634.8
CDS TCA 72 bp TTGGTGAGCGCCGCGGCCACCTCGCCAGTCCTTCTTTaGTGGCCCATCCACTGTCTTCTGAGTGGCATTAGC +
Preference number: 6 (lower is better)
Translates to: LVSAAATSPVLL*WPIHCLLSGIS
Trigger: GCTAATGCCACTCAGAAGACAGTGGATGGGCCATCAAAGAAGGACTGGCGAGGTGGCCGCGGCGCTCACCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182067.8
CDS CCA 72 bp AACCGTGGGTGGTGGATCCTCAACCTTGGGTGGAGGTaGTCTGATCACAGGGCATGGGCATGGACATGGGCA +
Preference number: 6 (lower is better)
Translates to: NRGWWILNLGWR*SDHRAWAWTWA
Trigger: TGCCCATGTCCATGCCCATGCCCTGTGATCAGACCACCTCCACCCAAGGTTGAGGATCCACCACCCACGGTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074758.6
ENSMUST00000182634.8
CDS CAA 72 bp TTTGGTGAGCGCCGCGGCCACCTCGCCAGTCCTTCTTaGATGGCCCATCCACTGTCTTCTGAGTGGCTGTGT +
Preference number: 6 (lower is better)
Translates to: FGERRGHLASPS*MAHPLSSEWLC
Trigger: ACACAGCCACTCAGAAGACAGTGGATGGGCCATCAAAGAAGGACTGGCGAGGTGGCCGCGGCGCTCACCAAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074758.6
ENSMUST00000182634.8
CDS CCA 72 bp CATGGGCATGGGCATGGGCATCGGTCCCGCCGTAGCTaGACAACAGTAACATTGGTAAGGACCACGTCACGT +
Preference number: 6 (lower is better)
Translates to: HGHGHGHRSRRS*TTVTLVRTTSR
Trigger: ACGTGACGTGGTCCTTACCAATGTTACTGTTGTCCAGCTACGGCGGGACCGATGCCCATGCCCATGCCCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074758.6
ENSMUST00000182634.8
CDS CAA 72 bp GGCTGTTCTTCAACCGTGGGTGGTGGATCCTCAACCTaGGGTGGAGGTGGTCTGATCACAGGGCATGGGCAT +
Preference number: 6 (lower is better)
Translates to: GCSSTVGGGSST*GGGGLITGHGH
Trigger: ATGCCCATGCCCTGTGATCAGACCACCTCCACCCAAGGTTGAGGATCCACCACCCACGGTTGAAGAACAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074758.6
ENSMUST00000182634.8
CDS CAA 90 bp TCCATGCAGACTCGCAGCACCAGACGACCAATGCGTCCAAATCCATaGATACCCACTGTCAGCTCTCTAGCTGGCTTTTGGAGTGGTGGG +
Preference number: 6 (lower is better)
Translates to: SMQTRSTRRPMRPNP*IPTVSSLAGFWSGG
Trigger: CCCACCACTCCAAAAGCCAGCTAGAGAGCTGACAGTGGGTATCAATGGATTTGGACGCATTGGTCGTCTGGTGCTGCGAGTCTGCATGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074758.6
ENSMUST00000182634.8
CDS CCA 72 bp TGGCACCAGATGAAATATGTGCCGAAGCTGCCTCGATaGACAGATAGACGCCTGTACACTCCACCACGTAGG +
Preference number: 6 (lower is better)
Translates to: WHQMKYVPKLPR*TDRRLYTPPRR
Trigger: CCTACGTGGTGGAGTGTACAGGCGTCTATCTGTCCATCGAGGCAGCTTCGGCACATATTTCATCTGGTGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074758.6
ENSMUST00000182634.8
CDS TCA 72 bp CGCCAGTCCTTCTTTGATGGCCCATCCACTGTCTTCTaGGTGGCATTAGCCCTTCCACGATCCCGAAGTTTT +
Preference number: 6 (lower is better)
Translates to: RQSFFDGPSTVF*VALALPRSRSF
Trigger: AAAACTTCGGGATCGTGGAAGGGCTAATGCCACTCAGAAGACAGTGGATGGGCCATCAAAGAAGGACTGGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000182067.8
CDS CAA 72 bp ACTCGCAGCACCAGACGACCAATGCGTCCAAATCCATaGATACCCACTGTCAGCTCTCTAGCTGGCTTTTGG +
Preference number: 6 (lower is better)
Translates to: TRSTRRPMRPNP*IPTVSSLAGFW
Trigger: CCAAAAGCCAGCTAGAGAGCTGACAGTGGGTATCAATGGATTTGGACGCATTGGTCGTCTGGTGCTGCGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074758.6
ENSMUST00000182634.8
CDS CAA 72 bp TTCCCTATAGAGCTCCAGGGGATTTCTTTAGGGTCTTaGCACTGGTACGTGTTGATCTCAAGGTTGTCCACA +
Preference number: 6 (lower is better)
Translates to: FPIELQGISLGS*HWYVLISRLST
Trigger: TGTGGACAACCTTGAGATCAACACGTACCAGTGCAAAGACCCTAAAGAAATCCCCTGGAGCTCTATAGGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074758.6
ENSMUST00000182634.8
CDS CCA 72 bp ATAGAGCTCCAGGGGATTTCTTTAGGGTCTTTGCACTaGTACGTGTTGATCTCAAGGTTGTCCACAACTAGT +
Preference number: 6 (lower is better)
Translates to: IELQGISLGSLH*YVLISRLSTTS
Trigger: ACTAGTTGTGGACAACCTTGAGATCAACACGTACCAGTGCAAAGACCCTAAAGAAATCCCCTGGAGCTCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074758.6
ENSMUST00000182634.8
CDS CAA 90 bp ATAGAGCTCCAGGGGATTTCTTTAGGGTCTTTGCACTGGTACGTGTaGATCTCAAGGTTGTCCACAACTAGTTGTCCATTCTTATGTTCC +
Preference number: 6 (lower is better)
Translates to: IELQGISLGSLHWYV*ISRLSTTSCPFLCS
Trigger: GGAACATAAGAATGGACAACTAGTTGTGGACAACCTTGAGATCAACACGTACCAGTGCAAAGACCCTAAAGAAATCCCCTGGAGCTCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000074758.6
ENSMUST00000182634.8
CDS CAA 72 bp TTAGGGTCTTTGCACTGGTACGTGTTGATCTCAAGGTaGTCCACAACTAGTTGTCCATTCTTATGTTCCACG +
Preference number: 6 (lower is better)
Translates to: LGSLHWYVLISR*STTSCPFLCST
Trigger: CGTGGAACATAAGAATGGACAACTAGTTGTGGACAACCTTGAGATCAACACGTACCAGTGCAAAGACCCTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074758.6
ENSMUST00000182634.8
CDS CAA 90 bp GGGATTTCTTTAGGGTCTTTGCACTGGTACGTGTTGATCTCAAGGTaGTCCACAACTAGTTGTCCATTCTTATGTTCCACGTTTCCTTTG +
Preference number: 6 (lower is better)
Translates to: GISLGSLHWYVLISR*STTSCPFLCSTFPL
Trigger: CAAAGGAAACGTGGAACATAAGAATGGACAACTAGTTGTGGACAACCTTGAGATCAACACGTACCAGTGCAAAGACCCTAAAGAAATCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000074758.6
ENSMUST00000182634.8