Pregenerated sensors for GAPDH (Mus musculus)

Ensembl gene IDs: ENSMUSG00000057666

Ensembl transcript IDs: ENSMUST00000073605.15, ENSMUST00000117757.9, ENSMUST00000118875.8

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CCA 90 bp	GGTATTCAAGAGAGTAGGGAGGGCTCCCTAGGCCCCTCCTGTTATTATGGGGGTGCTCAGTGTCCTTGCTaGGGTGGGTGGTCCAGGGTT	+
Preference number: 2 (lower is better) Translates to: GIQESREGSLGPSCYYGGAQCPC*GGWSRV Trigger: AACCCTGGACCACCCACCCCAGCAAGGACACTGAGC...ACCCCCATAATAACAGGAGGGGCCTAGGGAGCCCTCCCTACTCTCTTGAATACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000073605.15 ENSMUST00000117757.9 ENSMUST00000118875.8
3UTR-3UTR TCA 90 bp	GGTATTCAAGAGAGTAGGGAGGGCTCCCTAGGCCCCTCCTGTTATTATGGGGGTCTGGGATGGAAATTGTaGGGGAGATGCTCAGTGTTG	+
Preference number: 2 (lower is better) Translates to: GIQESREGSLGPSCYYGGLGWKL*GRCSVL Trigger: CAACACTGAGCATCTCCCTCACAATTTCCATCCCAG...ACCCCCATAATAACAGGAGGGGCCTAGGGAGCCCTCCCTACTCTCTTGAATACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000073605.15 ENSMUST00000117757.9 ENSMUST00000118875.8
3UTR-3UTR CAA 90 bp	GGTATTCAAGAGAGTAGGGAGGGCTCCCTAGGCCCCTCCTGTTATTATGGGGGTTCTTGCTCAGTGTCCTaGCTGGGGTGGGTGGTCCAG	+
Preference number: 3 (lower is better) Translates to: GIQESREGSLGPSCYYGGSCSVS*LGWVVQ Trigger: CTGGACCACCCACCCCAGCAAGGACACTGAGCAAGA...ACCCCCATAATAACAGGAGGGGCCTAGGGAGCCCTCCCTACTCTCTTGAATACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000073605.15 ENSMUST00000117757.9 ENSMUST00000118875.8
CDS-3UTR GCA 90 bp	GCTCAGTGTTGGGGGCCGAGTTGGGATAGGGCCTCTCTTGCTCAGTGTCCTTGCCAACAATCTCCACTTTaGCACTGCAAATGGCAGCCC	+
Preference number: 4 (lower is better) Translates to: AQCWGPSWDRASLAQCPCQQSPL*HCKWQP Trigger: GGGCTGCCATTTGCAGTGGCAAAGTGGAGATTGTTG...GCAAGGACACTGAGCAAGAGAGGCCCTATCCCAACTCGGCCCCCAACACTGAGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000073605.15 ENSMUST00000117757.9 ENSMUST00000118875.8
CDS-3UTR GCA 90 bp	GGTATTCAAGAGAGTAGGGAGGGCTCCCTAGGCCCCTCCTGTTATTATGGGGGTCAACAATCTCCACTTTaGCACTGCAAATGGCAGCCC	+
Preference number: 4 (lower is better) Translates to: GIQESREGSLGPSCYYGGQQSPL*HCKWQP Trigger: GGGCTGCCATTTGCAGTGGCAAAGTGGAGATTGTTG...ACCCCCATAATAACAGGAGGGGCCTAGGGAGCCCTCCCTACTCTCTTGAATACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000073605.15 ENSMUST00000117757.9 ENSMUST00000118875.8
CDS-3UTR CAA 90 bp	GCTCAGTGTTGGGGGCCGAGTTGGGATAGGGCCTCTCTTGCTCAGTGTCCTTGCGCAACAATCTCCACTTaGCCACTGCAAATGGCAGCC	+
Preference number: 5 (lower is better) Translates to: AQCWGPSWDRASLAQCPCATIST*PLQMAA Trigger: GGCTGCCATTTGCAGTGGCAAAGTGGAGATTGTTGC...GCAAGGACACTGAGCAAGAGAGGCCCTATCCCAACTCGGCCCCCAACACTGAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000073605.15 ENSMUST00000117757.9 ENSMUST00000118875.8
CDS-3UTR CAA 90 bp	GGTATTCAAGAGAGTAGGGAGGGCTCCCTAGGCCCCTCCTGTTATTATGGGGGTGCAACAATCTCCACTTaGCCACTGCAAATGGCAGCC	+
Preference number: 5 (lower is better) Translates to: GIQESREGSLGPSCYYGGATIST*PLQMAA Trigger: GGCTGCCATTTGCAGTGGCAAAGTGGAGATTGTTGC...ACCCCCATAATAACAGGAGGGGCCTAGGGAGCCCTCCCTACTCTCTTGAATACC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000073605.15 ENSMUST00000117757.9 ENSMUST00000118875.8