Pregenerated sensors for GAP43 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047261Ensembl transcript IDs: ENSMUST00000102817.5
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | TTAATATTTTGGACTCCTCAGAACGGAACATTGCACACACACACTTGGAACAGATTTTCTTTAAATGTTTaGCACACAGAGAGAGAGGGC | + |
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Preference number: 2 (lower is better) Translates to: LIFWTPQNGTLHTHTWNRFSLNV*HTEREG Trigger: GCCCTCTCTCTCTGTGTGGCAAACATTTAAAGAAAA...TCTGTTCCAAGTGTGTGTGTGCAATGTTCCGTTCTGAGGAGTCCAAAATATTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| 3UTR-3UTR CAA 90 bp | TTAATATTTTGGACTCCTCAGAACGGAACATTGCACACACACACTTGGAACAGAGCCACACTGTTGGACTaGGGATCTTTCCTGCTTTTT | + |
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Preference number: 3 (lower is better) Translates to: LIFWTPQNGTLHTHTWNRATLLD*GSFLLF Trigger: AAAAAGCAGGAAAGATCCCAAGTCCAACAGTGTGGC...TCTGTTCCAAGTGTGTGTGTGCAATGTTCCGTTCTGAGGAGTCCAAAATATTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| 3UTR-3UTR CAA 90 bp | TTTTGGACTCCTCAGAACGGAACATTGCACACACACACTTGGAACAGAGAGAAATTTTTCTTTAAATGTTaGCCACACAGAGAGAGAGGG | + |
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Preference number: 3 (lower is better) Translates to: FWTPQNGTLHTHTWNREKFFFKC*PHRERG Trigger: CCCTCTCTCTCTGTGTGGCAAACATTTAAAGAAAAA...TTTCTCTCTGTTCCAAGTGTGTGTGTGCAATGTTCCGTTCTGAGGAGTCCAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR GCA 90 bp | CATTGCACACACACACTTGGAACAGAGAGAAATAGAGAGGAAAGTGGACTCCCAGGTGGCAGCATCCTCTaGAGCAGGGGTGGTGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: HCTHTLGTERNREESGLPGGSIL*SRGGGS Trigger: GCTGCCACCACCCCTGCTGCAGAGGATGCTGCCACC...TGGGAGTCCACTTTCCTCTCTATTTCTCTCTGTTCCAAGTGTGTGTGTGCAATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR CCA 90 bp | TTTTGGACTCCTCAGAACGGAACATTGCACACACACACTTGGAACAGAGAGAAATGGGCTCCTCAGCCTTaGGGCTGGTGGCTGGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: FWTPQNGTLHTHTWNREKWAPQP*GWWLGL Trigger: CAGCCCCAGCCACCAGCCCCAAGGCTGAGGAGCCCA...TTTCTCTCTGTTCCAAGTGTGTGTGTGCAATGTTCCGTTCTGAGGAGTCCAAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR GCA 90 bp | CATTGCACACACACACTTGGAACAGAGAGAAATAGAGAGGAAAGTGGACTCCCAGTCTCCGTTGGAGGCTaGGCTGCCTTGGTGGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: HCTHTLGTERNREESGLPVSVGG*AALVAA Trigger: TGCTGCCACCAAGGCAGCGCAGCCTCCAACGGAGAC...TGGGAGTCCACTTTCCTCTCTATTTCTCTCTGTTCCAAGTGTGTGTGTGCAATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR CCA 90 bp | CTCCTCAGAACGGAACATTGCACACACACACTTGGAACAGAGAGAAATAGAGAGCATCTCCTGCCTTGCTaGGCTCCTCAGCCTTGGGGC | + |
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Preference number: 4 (lower is better) Translates to: LLRTEHCTHTLGTERNREHLLPC*APQPWG Trigger: GCCCCAAGGCTGAGGAGCCCAGCAAGGCAGGAGATG...CTCTCTATTTCTCTCTGTTCCAAGTGTGTGTGTGCAATGTTCCGTTCTGAGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR GCA 90 bp | CTCCTCAGAACGGAACATTGCACACACACACTTGGAACAGAGAGAAATAGAGAGGGCCTCAGCAGCTGGTaGATCACCCTTCTTCTCGCC | + |
|
Preference number: 4 (lower is better) Translates to: LLRTEHCTHTLGTERNREGLSSW*ITLLLA Trigger: GGCGAGAAGAAGGGTGATGCACCAGCTGCTGAGGCC...CTCTCTATTTCTCTCTGTTCCAAGTGTGTGTGTGCAATGTTCCGTTCTGAGGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR GCA 90 bp | TATTTTGGACTCCTCAGAACGGAACATTGCACACACACACTTGGAACAGAGAGAGCTGGTGGCTGGGGCTaGATCGGTAGTAGCAGAGCC | + |
|
Preference number: 4 (lower is better) Translates to: YFGLLRTEHCTHTLGTERAGGWG*IGSSRA Trigger: GGCTCTGCTACTACCGATGCAGCCCCAGCCACCAGC...TCTCTCTGTTCCAAGTGTGTGTGTGCAATGTTCCGTTCTGAGGAGTCCAAAATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR GCA 90 bp | CTCCTCAGAACGGAACATTGCACACACACACTTGGAACAGAGAGAAATAGAGAGGTGCATCTCCTGCCTTaGTGGGCTCCTCAGCCTTGG | + |
|
Preference number: 4 (lower is better) Translates to: LLRTEHCTHTLGTERNREVHLLP*WAPQPW Trigger: CCAAGGCTGAGGAGCCCAGCAAGGCAGGAGATGCAC...CTCTCTATTTCTCTCTGTTCCAAGTGTGTGTGTGCAATGTTCCGTTCTGAGGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR CCA 90 bp | TTAATATTTTGGACTCCTCAGAACGGAACATTGCACACACACACTTGGAACAGACCTCAGCCTTGGGGCTaGTGGCTGGGGCTGCATCGG | + |
|
Preference number: 4 (lower is better) Translates to: LIFWTPQNGTLHTHTWNRPQPWG*WLGLHR Trigger: CCGATGCAGCCCCAGCCACCAGCCCCAAGGCTGAGG...TCTGTTCCAAGTGTGTGTGTGCAATGTTCCGTTCTGAGGAGTCCAAAATATTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR CCA 90 bp | TATTTTGGACTCCTCAGAACGGAACATTGCACACACACACTTGGAACAGAGAGAGCTGCGCTGCCTTGGTaGCAGCATCCTCTGCAGCAG | + |
|
Preference number: 4 (lower is better) Translates to: YFGLLRTEHCTHTLGTERAALPW*QHPLQQ Trigger: CTGCTGCAGAGGATGCTGCCACCAAGGCAGCGCAGC...TCTCTCTGTTCCAAGTGTGTGTGTGCAATGTTCCGTTCTGAGGAGTCCAAAATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR GCA 90 bp | CATTGCACACACACACTTGGAACAGAGAGAAATAGAGAGGAAAGTGGACTCCCAAGAAGGTGCATCTCCTaGCTTGCTGGGCTCCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: HCTHTLGTERNREESGLPRRCIS*LAGLLS Trigger: GCTGAGGAGCCCAGCAAGGCAGGAGATGCACCTTCT...TGGGAGTCCACTTTCCTCTCTATTTCTCTCTGTTCCAAGTGTGTGTGTGCAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR TCA 90 bp | TTTTGGACTCCTCAGAACGGAACATTGCACACACACACTTGGAACAGAGAGAAAACTTTCTGTCTCCGCTaGGCCGGCCTTTTCCTCGGA | + |
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Preference number: 4 (lower is better) Translates to: FWTPQNGTLHTHTWNREKTFCLR*AGLFLG Trigger: TCCGAGGAAAAGGCCGGCTCAGCGGAGACAGAAAGT...TTTCTCTCTGTTCCAAGTGTGTGTGTGCAATGTTCCGTTCTGAGGAGTCCAAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR GCA 90 bp | CTCCTCAGAACGGAACATTGCACACACACACTTGGAACAGAGAGAAATAGAGAGCCTCCTCAGCTTGGCTaGTTTCTGCAGTCTCCGTTG | + |
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Preference number: 4 (lower is better) Translates to: LLRTEHCTHTLGTERNREPPQLG*FLQSPL Trigger: CAACGGAGACTGCAGAAAGCAGCCAAGCTGAGGAGG...CTCTCTATTTCTCTCTGTTCCAAGTGTGTGTGTGCAATGTTCCGTTCTGAGGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR CCA 90 bp | TATTTTGGACTCCTCAGAACGGAACATTGCACACACACACTTGGAACAGAGAGATTCTGCAGTCTCCGTTaGAGGCTGCGCTGCCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: YFGLLRTEHCTHTLGTERFCSLR*RLRCLG Trigger: ACCAAGGCAGCGCAGCCTCCAACGGAGACTGCAGAA...TCTCTCTGTTCCAAGTGTGTGTGTGCAATGTTCCGTTCTGAGGAGTCCAAAATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR TCA 90 bp | CTCCTCAGAACGGAACATTGCACACACACACTTGGAACAGAGAGAAATAGAGAGCCACGGAAGCTAGCCTaGATTTTGGTCGCAGCCTTA | + |
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Preference number: 4 (lower is better) Translates to: LLRTEHCTHTLGTERNREPRKLA*ILVAAL Trigger: TAAGGCTGCGACCAAAATTCAGGCTAGCTTCCGTGG...CTCTCTATTTCTCTCTGTTCCAAGTGTGTGTGTGCAATGTTCCGTTCTGAGGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR CCA 90 bp | TTACCAAAAACTCGCCATAACAACACCAAGAAACAAATGTTTAAGCCACACTGTGAGGCTGCGCTGCCTTaGTGGCAGCATCCTCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: LPKTRHNNTKKQMFKPHCEAALP*WQHPLQ Trigger: CTGCAGAGGATGCTGCCACCAAGGCAGCGCAGCCTC...ACAGTGTGGCTTAAACATTTGTTTCTTGGTGTTGTTATGGCGAGTTTTTGGTAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR TCA 90 bp | TTACCAAAAACTCGCCATAACAACACCAAGAAACAAATGTTTAAGCCACACTGTTGGCAGCAGCATCAGTaGCAGCAGCAGGCACATCGG | + |
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Preference number: 4 (lower is better) Translates to: LPKTRHNNTKKQMFKPHCWQQHQ*QQQAHR Trigger: CCGATGTGCCTGCTGCTGTCACTGATGCTGCTGCCA...ACAGTGTGGCTTAAACATTTGTTTCTTGGTGTTGTTATGGCGAGTTTTTGGTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR GCA 90 bp | CCAAGAAACAAATGTTTAAGCCACACTGTTGGACTTGGGATCTTTCCTGCTTTTCTTCTCCTCAGAAGGTaGATCTCCTGCCTTGCTGGG | + |
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Preference number: 4 (lower is better) Translates to: PRNKCLSHTVGLGIFPAFLLLRR*ISCLAG Trigger: CCCAGCAAGGCAGGAGATGCACCTTCTGAGGAGAAG...AAAAGCAGGAAAGATCCCAAGTCCAACAGTGTGGCTTAAACATTTGTTTCTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR GCA 90 bp | CCAAGAAACAAATGTTTAAGCCACACTGTTGGACTTGGGATCTTTCCTGCTTTTAGCTTGGCTGCTTTCTaGAGTCTCCGTTGGAGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: PRNKCLSHTVGLGIFPAFSLAAF*SLRWRL Trigger: CAGCCTCCAACGGAGACTGCAGAAAGCAGCCAAGCT...AAAAGCAGGAAAGATCCCAAGTCCAACAGTGTGGCTTAAACATTTGTTTCTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR CCA 90 bp | CCAAGAAACAAATGTTTAAGCCACACTGTTGGACTTGGGATCTTTCCTGCTTTTGGCCATCTTCAGCCTTaGAGGACGGGGAGTTATCAG | + |
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Preference number: 4 (lower is better) Translates to: PRNKCLSHTVGLGIFPAFGHLQP*RTGSYQ Trigger: CTGATAACTCCCCGTCCTCCAAGGCTGAAGATGGCC...AAAAGCAGGAAAGATCCCAAGTCCAACAGTGTGGCTTAAACATTTGTTTCTTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR TCA 90 bp | TATTTTGGACTCCTCAGAACGGAACATTGCACACACACACTTGGAACAGAGAGACCTTATCTTCCGGCTTaGCACCATCTTGTTCAATCT | + |
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Preference number: 4 (lower is better) Translates to: YFGLLRTEHCTHTLGTERPYLPA*HHLVQS Trigger: AGATTGAACAAGATGGTGTCAAGCCGGAAGATAAGG...TCTCTCTGTTCCAAGTGTGTGTGTGCAATGTTCCGTTCTGAGGAGTCCAAAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS GCA 90 bp | CTCCTCAGCTTGGCTGCTTTCTGCAGTCTCCGTTGGAGGCTGCGCTaGCTTGGTGGCAGCATCCTCTGCAGCAGGGGTGGTGGCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: LLSLAAFCSLRWRLR*LGGSILCSRGGGSS Trigger: GCTGCTGCCACCACCCCTGCTGCAGAGGATGCTGCCACCAAGGCAGCGCAGCCTCCAACGGAGACTGCAGAAAGCAGCCAAGCTGAGGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS GCA 90 bp | TTCTCCTCCTCAGCTTGGCTGCTTTCTGCAGTCTCCGTTGGAGGCTaGGCTGCCTTGGTGGCAGCATCCTCTGCAGCAGGGGTGGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: FSSSAWLLSAVSVGG*AALVAASSAAGVVA Trigger: TGCCACCACCCCTGCTGCAGAGGATGCTGCCACCAAGGCAGCGCAGCCTCCAACGGAGACTGCAGAAAGCAGCCAAGCTGAGGAGGAGAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS GCA 90 bp | GGCTTCGTCTACAGCGTCTTTCTCCTCCTCAGCTTGGCTGCTTTCTaGAGTCTCCGTTGGAGGCTGCGCTGCCTTGGTGGCAGCATCCTC | + |
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Preference number: 5 (lower is better) Translates to: GFVYSVFLLLSLAAF*SLRWRLRCLGGSIL Trigger: GAGGATGCTGCCACCAAGGCAGCGCAGCCTCCAACGGAGACTGCAGAAAGCAGCCAAGCTGAGGAGGAGAAAGACGCTGTAGACGAAGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR CAA 90 bp | CATTGCACACACACACTTGGAACAGAGAGAAATAGAGAGGAAAGTGGACTCCCAGCATCATCCTTCTCCTaGGCCTCGGCCTCAGCAGCT | + |
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Preference number: 5 (lower is better) Translates to: HCTHTLGTERNREESGLPASSFS*ASASAA Trigger: AGCTGCTGAGGCCGAGGCCAAGGAGAAGGATGATGC...TGGGAGTCCACTTTCCTCTCTATTTCTCTCTGTTCCAAGTGTGTGTGTGCAATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR CAA 90 bp | TATTTTGGACTCCTCAGAACGGAACATTGCACACACACACTTGGAACAGAGAGAGGTGCATCTCCTGCCTaGCTGGGCTCCTCAGCCTTG | + |
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Preference number: 5 (lower is better) Translates to: YFGLLRTEHCTHTLGTERGASPA*LGSSAL Trigger: CAAGGCTGAGGAGCCCAGCAAGGCAGGAGATGCACC...TCTCTCTGTTCCAAGTGTGTGTGTGCAATGTTCCGTTCTGAGGAGTCCAAAATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR CAA 90 bp | CTCCTCAGAACGGAACATTGCACACACACACTTGGAACAGAGAGAAATAGAGAGTGTTTAGGCTCCTCCTaGGCTGGGCCATCTTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: LLRTEHCTHTLGTERNRECLGSS*AGPSSA Trigger: GGCTGAAGATGGCCCAGCCAAGGAGGAGCCTAAACA...CTCTCTATTTCTCTCTGTTCCAAGTGTGTGTGTGCAATGTTCCGTTCTGAGGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR CAA 90 bp | CATTGCACACACACACTTGGAACAGAGAGAAATAGAGAGGAAAGTGGACTCCCAAGCAGGCACATCGGCTaGTTTAGGCTCCTCCTTGGC | + |
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Preference number: 5 (lower is better) Translates to: HCTHTLGTERNREESGLPSRHIG*FRLLLG Trigger: GCCAAGGAGGAGCCTAAACAAGCCGATGTGCCTGCT...TGGGAGTCCACTTTCCTCTCTATTTCTCTCTGTTCCAAGTGTGTGTGTGCAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR CAA 90 bp | TTAATATTTTGGACTCCTCAGAACGGAACATTGCACACACACACTTGGAACAGATTTCTGCAGTCTCCGTaGGAGGCTGCGCTGCCTTGG | + |
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Preference number: 5 (lower is better) Translates to: LIFWTPQNGTLHTHTWNRFLQSP*EAALPW Trigger: CCAAGGCAGCGCAGCCTCCAACGGAGACTGCAGAAA...TCTGTTCCAAGTGTGTGTGTGCAATGTTCCGTTCTGAGGAGTCCAAAATATTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR CAA 90 bp | CATTGCACACACACACTTGGAACAGAGAGAAATAGAGAGGAAAGTGGACTCCCAGCACTTTCCTTAGGTTaGGCTTCGTCTACAGCGTCT | + |
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Preference number: 5 (lower is better) Translates to: HCTHTLGTERNREESGLPALSLG*ASSTAS Trigger: AGACGCTGTAGACGAAGCCAAACCTAAGGAAAGTGC...TGGGAGTCCACTTTCCTCTCTATTTCTCTCTGTTCCAAGTGTGTGTGTGCAATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR CAA 90 bp | TTTTGGACTCCTCAGAACGGAACATTGCACACACACACTTGGAACAGAGAGAAACGGCTTGACACCATCTaGTTCAATCTTTTGGTCCTC | + |
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Preference number: 5 (lower is better) Translates to: FWTPQNGTLHTHTWNREKRLDTI*FNLLVL Trigger: GAGGACCAAAAGATTGAACAAGATGGTGTCAAGCCG...TTTCTCTCTGTTCCAAGTGTGTGTGTGCAATGTTCCGTTCTGAGGAGTCCAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR CAA 90 bp | TATTTTGGACTCCTCAGAACGGAACATTGCACACACACACTTGGAACAGAGAGAGCCTTATCTTCCGGCTaGACACCATCTTGTTCAATC | + |
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Preference number: 5 (lower is better) Translates to: YFGLLRTEHCTHTLGTERALSSG*TPSCSI Trigger: GATTGAACAAGATGGTGTCAAGCCGGAAGATAAGGC...TCTCTCTGTTCCAAGTGTGTGTGTGCAATGTTCCGTTCTGAGGAGTCCAAAATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS-3UTR CAA 90 bp | TTACCAAAAACTCGCCATAACAACACCAAGAAACAAATGTTTAAGCCACACTGTCCCTTCTTCTCGCCTTaGAGCTTTTTCCTTGTTATG | + |
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Preference number: 5 (lower is better) Translates to: LPKTRHNNTKKQMFKPHCPFFSP*SFFLVM Trigger: CATAACAAGGAAAAAGCTCAAAGGCGAGAAGAAGGG...ACAGTGTGGCTTAAACATTTGTTTCTTGGTGTTGTTATGGCGAGTTTTTGGTAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS CCA 72 bp | TTTCTGCAGTCTCCGTTGGAGGCTGCGCTGCCTTGGTaGCAGCATCCTCTGCAGCAGGGGTGGTGGCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: FLQSPLEAALPW*QHPLQQGWWQQ Trigger: CTGCTGCCACCACCCCTGCTGCAGAGGATGCTGCCACCAAGGCAGCGCAGCCTCCAACGGAGACTGCAGAAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS CCA 72 bp | TGCTTTCTGCAGTCTCCGTTGGAGGCTGCGCTGCCTTaGTGGCAGCATCCTCTGCAGCAGGGGTGGTGGCAG | + |
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Preference number: 6 (lower is better) Translates to: CFLQSPLEAALP*WQHPLQQGWWQ Trigger: CTGCCACCACCCCTGCTGCAGAGGATGCTGCCACCAAGGCAGCGCAGCCTCCAACGGAGACTGCAGAAAGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS CAA 90 bp | CAGCGTCTTTCTCCTCCTCAGCTTGGCTGCTTTCTGCAGTCTCCGTaGGAGGCTGCGCTGCCTTGGTGGCAGCATCCTCTGCAGCAGGGG | + |
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Preference number: 6 (lower is better) Translates to: QRLSPPQLGCFLQSP*EAALPWWQHPLQQG Trigger: CCCCTGCTGCAGAGGATGCTGCCACCAAGGCAGCGCAGCCTCCAACGGAGACTGCAGAAAGCAGCCAAGCTGAGGAGGAGAAAGACGCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS GCA 72 bp | TTGGCTGCTTTCTGCAGTCTCCGTTGGAGGCTGCGCTaGCTTGGTGGCAGCATCCTCTGCAGCAGGGGTGGT | + |
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Preference number: 6 (lower is better) Translates to: LAAFCSLRWRLR*LGGSILCSRGG Trigger: ACCACCCCTGCTGCAGAGGATGCTGCCACCAAGGCAGCGCAGCCTCCAACGGAGACTGCAGAAAGCAGCCAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS TCA 72 bp | ATCAGTGGTAGCTTTAGCAGCACTTTCTGTCTCCGCTaGGCCGGCCTTTTCCTCGGAGGGGGCCGCATCCCC | + |
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Preference number: 6 (lower is better) Translates to: ISGSFSSTFCLR*AGLFLGGGRIP Trigger: GGGGATGCGGCCCCCTCCGAGGAAAAGGCCGGCTCAGCGGAGACAGAAAGTGCTGCTAAAGCTACCACTGAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS CAA 72 bp | TCTCCTCCTCAGCTTGGCTGCTTTCTGCAGTCTCCGTaGGAGGCTGCGCTGCCTTGGTGGCAGCATCCTCTG | + |
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Preference number: 6 (lower is better) Translates to: SPPQLGCFLQSP*EAALPWWQHPL Trigger: CAGAGGATGCTGCCACCAAGGCAGCGCAGCCTCCAACGGAGACTGCAGAAAGCAGCCAAGCTGAGGAGGAGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS GCA 72 bp | TACAGCGTCTTTCTCCTCCTCAGCTTGGCTGCTTTCTaGAGTCTCCGTTGGAGGCTGCGCTGCCTTGGTGGC | + |
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Preference number: 6 (lower is better) Translates to: YSVFLLLSLAAF*SLRWRLRCLGG Trigger: GCCACCAAGGCAGCGCAGCCTCCAACGGAGACTGCAGAAAGCAGCCAAGCTGAGGAGGAGAAAGACGCTGTA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS CAA 90 bp | TCCTTCTTCTCCACACCATCAGCAACGGGAGCATCATCCTTCTCCTaGGCCTCGGCCTCAGCAGCTGGTGCATCACCCTTCTTCTCGCCT | + |
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Preference number: 6 (lower is better) Translates to: SFFSTPSATGASSFS*ASASAAGASPFFSP Trigger: AGGCGAGAAGAAGGGTGATGCACCAGCTGCTGAGGCCGAGGCCAAGGAGAAGGATGATGCTCCCGTTGCTGATGGTGTGGAGAAGAAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS CAA 90 bp | GCATCAGTGACAGCAGCAGGCACATCGGCTTGTTTAGGCTCCTCCTaGGCTGGGCCATCTTCAGCCTTGGAGGACGGGGAGTTATCAGTG | + |
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Preference number: 6 (lower is better) Translates to: ASVTAAGTSACLGSS*AGPSSALEDGELSV Trigger: CACTGATAACTCCCCGTCCTCCAAGGCTGAAGATGGCCCAGCCAAGGAGGAGCCTAAACAAGCCGATGTGCCTGCTGCTGTCACTGATGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS CCA 72 bp | AGCAGGCACATCGGCTTGTTTAGGCTCCTCCTTGGCTaGGCCATCTTCAGCCTTGGAGGACGGGGAGTTATC | + |
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Preference number: 6 (lower is better) Translates to: SRHIGLFRLLLG*AIFSLGGRGVI Trigger: GATAACTCCCCGTCCTCCAAGGCTGAAGATGGCCCAGCCAAGGAGGAGCCTAAACAAGCCGATGTGCCTGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS CAA 90 bp | TCGGGGTCTTCTTTACCCTCATCCTGTCGGGCACTTTCCTTAGGTTaGGCTTCGTCTACAGCGTCTTTCTCCTCCTCAGCTTGGCTGCTT | + |
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Preference number: 6 (lower is better) Translates to: SGSSLPSSCRALSLG*ASSTASFSSSAWLL Trigger: AAGCAGCCAAGCTGAGGAGGAGAAAGACGCTGTAGACGAAGCCAAACCTAAGGAAAGTGCCCGACAGGATGAGGGTAAAGAAGACCCCGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS CAA 72 bp | GCCTCAGCAGCTGGTGCATCACCCTTCTTCTCGCCTTaGAGCTTTTTCCTTGTTATGTGTCCACGGAAGCTA | + |
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Preference number: 6 (lower is better) Translates to: ASAAGASPFFSP*SFFLVMCPRKL Trigger: TAGCTTCCGTGGACACATAACAAGGAAAAAGCTCAAAGGCGAGAAGAAGGGTGATGCACCAGCTGCTGAGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS TCA 72 bp | TTTTGGTCGCAGCCTTATGAGCCTTATCTTCCGGCTTaGCACCATCTTGTTCAATCTTTTGGTCCTCATCAT | + |
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Preference number: 6 (lower is better) Translates to: FWSQPYEPYLPA*HHLVQSFGPHH Trigger: ATGATGAGGACCAAAAGATTGAACAAGATGGTGTCAAGCCGGAAGATAAGGCTCATAAGGCTGCGACCAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS CAA 90 bp | TTTGGTCGCAGCCTTATGAGCCTTATCTTCCGGCTTGACACCATCTaGTTCAATCTTTTGGTCCTCATCATTCTTTTCAACCTGTTTGGT | + |
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Preference number: 6 (lower is better) Translates to: FGRSLMSLIFRLDTI*FNLLVLIILFNLFG Trigger: ACCAAACAGGTTGAAAAGAATGATGAGGACCAAAAGATTGAACAAGATGGTGTCAAGCCGGAAGATAAGGCTCATAAGGCTGCGACCAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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| CDS CAA 72 bp | AGCCTTATGAGCCTTATCTTCCGGCTTGACACCATCTaGTTCAATCTTTTGGTCCTCATCATTCTTTTCAAC | + |
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Preference number: 6 (lower is better) Translates to: SLMSLIFRLDTI*FNLLVLIILFN Trigger: GTTGAAAAGAATGATGAGGACCAAAAGATTGAACAAGATGGTGTCAAGCCGGAAGATAAGGCTCATAAGGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102817.5 |
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