Pregenerated sensors for GAMT (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020150Ensembl transcript IDs: ENSMUST00000020359.7, ENSMUST00000105363.8
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCTCTGGGAAGATGGCAGTGCCAGGCAGAGGTTAGGATGTCACACTaGGGGACAGTGGAGAGGCTGGAGCCCACAATCCAGCCACAAAGG | + |
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Preference number: 1 (lower is better) Translates to: ALGRWQCQAEVRMSH*GTVERLEPTIQPQR Trigger: CCTTTGTGGCTGGATTGTGGGCTCCAGCCTCTCCACTGTCCCTCAGTGTGACATCCTAACCTCTGCCTGGCACTGCCATCTTCCCAGAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| 3UTR CCA 90 bp | GATGGCAGTGCCAGGCAGAGGTTAGGATGTCACACTGAGGGACAGTaGAGAGGCTGGAGCCCACAATCCAGCCACAAAGGTACTGAGGAG | + |
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Preference number: 1 (lower is better) Translates to: DGSARQRLGCHTEGQ*RGWSPQSSHKGTEE Trigger: CTCCTCAGTACCTTTGTGGCTGGATTGTGGGCTCCAGCCTCTCCACTGTCCCTCAGTGTGACATCCTAACCTCTGCCTGGCACTGCCATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| 3UTR-3UTR TCA 90 bp | ACTCCTGAGCTCTGGGAAGATGGCAGTGCCAGGCAGAGGTTAGGATGTCACACTCAGCCACAAAGGTACTaGGGAGGACACAGGCTCCTT | + |
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Preference number: 2 (lower is better) Translates to: TPELWEDGSARQRLGCHTQPQRY*GGHRLL Trigger: AAGGAGCCTGTGTCCTCCTCAGTACCTTTGTGGCTG...AGTGTGACATCCTAACCTCTGCCTGGCACTGCCATCTTCCCAGAGCTCAGGAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| 3UTR-3UTR TCA 90 bp | TTCTTGTTAGCATTTATTTTACTCCTGAGCTCTGGGAAGATGGCAGTGCCAGGCGTTAGGATGTCACACTaGGGGACAGTGGAGAGGCTG | + |
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Preference number: 2 (lower is better) Translates to: FLLAFILLLSSGKMAVPGVRMSH*GTVERL Trigger: CAGCCTCTCCACTGTCCCTCAGTGTGACATCCTAAC...GCCTGGCACTGCCATCTTCCCAGAGCTCAGGAGTAAAATAAATGCTAACAAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000105363.8 |
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| 3UTR TCA 72 bp | AGATGGCAGTGCCAGGCAGAGGTTAGGATGTCACACTaGGGGACAGTGGAGAGGCTGGAGCCCACAATCCAG | + |
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Preference number: 3 (lower is better) Translates to: RWQCQAEVRMSH*GTVERLEPTIQ Trigger: CTGGATTGTGGGCTCCAGCCTCTCCACTGTCCCTCAGTGTGACATCCTAACCTCTGCCTGGCACTGCCATCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| 3UTR CCA 72 bp | AGGTTAGGATGTCACACTGAGGGACAGTGGAGAGGCTaGAGCCCACAATCCAGCCACAAAGGTACTGAGGAG | + |
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Preference number: 3 (lower is better) Translates to: RLGCHTEGQWRG*SPQSSHKGTEE Trigger: CTCCTCAGTACCTTTGTGGCTGGATTGTGGGCTCCAGCCTCTCCACTGTCCCTCAGTGTGACATCCTAACCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| 3UTR CCA 72 bp | AGTCTTCTTGTTAGCATTTATTTTACTCCTGAGCTCTaGGAAGATGGCAGTGCCAGGCAGAGGTTAGGATGT | + |
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Preference number: 3 (lower is better) Translates to: SLLVSIYFTPEL*EDGSARQRLGC Trigger: ACATCCTAACCTCTGCCTGGCACTGCCATCTTCCCAGAGCTCAGGAGTAAAATAAATGCTAACAAGAAGACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105363.8 |
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| CDS-3UTR CCA 90 bp | CAGTGGAGAGGCTGGAGCCCACAATCCAGCCACAAAGGTACTGAGGAGGACACAAGACCCGGCCCCCTCTaGAGGCAGCAGCCGCCGCTA | + |
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Preference number: 4 (lower is better) Translates to: QWRGWSPQSSHKGTEEDTRPGPL*RQQPPL Trigger: TAGCGGCGGCTGCTGCCTCCAGAGGGGGCCGGGTCT...TGTGTCCTCCTCAGTACCTTTGTGGCTGGATTGTGGGCTCCAGCCTCTCCACTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR CCA 90 bp | GGAGCCCACAATCCAGCCACAAAGGTACTGAGGAGGACACAGGCTCCTTGTAGAAGACCCGGCCCCCTCTaGAGGCAGCAGCCGCCGCTA | + |
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Preference number: 4 (lower is better) Translates to: GAHNPATKVLRRTQAPCRRPGPL*RQQPPL Trigger: TAGCGGCGGCTGCTGCCTCCAGAGGGGGCCGGGTCT...TCTACAAGGAGCCTGTGTCCTCCTCAGTACCTTTGTGGCTGGATTGTGGGCTCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR GCA 90 bp | GAGCTCTGGGAAGATGGCAGTGCCAGGCAGAGGTTAGGATGTCACACTGAGGGAGTCAGGCAGGGTAGGTaGCACCTCCTCCCACAGGCC | + |
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Preference number: 4 (lower is better) Translates to: ELWEDGSARQRLGCHTEGVRQGR*HLLPQA Trigger: GGCCTGTGGGAGGAGGTGGCACCTACCCTGCCTGAC...TCCCTCAGTGTGACATCCTAACCTCTGCCTGGCACTGCCATCTTCCCAGAGCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR CCA 90 bp | CAGTGGAGAGGCTGGAGCCCACAATCCAGCCACAAAGGTACTGAGGAGGACACAGTAGCGGCAGTCGGCTaGGGGCACCAGTGCCATCAC | + |
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Preference number: 4 (lower is better) Translates to: QWRGWSPQSSHKGTEEDTVAAVG*GHQCHH Trigger: GTGATGGCACTGGTGCCCCCAGCCGACTGCCGCTAC...TGTGTCCTCCTCAGTACCTTTGTGGCTGGATTGTGGGCTCCAGCCTCTCCACTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR GCA 90 bp | ACTCCTGAGCTCTGGGAAGATGGCAGTGCCAGGCAGAGGTTAGGATGTCACACTGTCAGGCAGGGTAGGTaGCACCTCCTCCCACAGGCC | + |
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Preference number: 4 (lower is better) Translates to: TPELWEDGSARQRLGCHTVRQGR*HLLPQA Trigger: GGCCTGTGGGAGGAGGTGGCACCTACCCTGCCTGAC...AGTGTGACATCCTAACCTCTGCCTGGCACTGCCATCTTCCCAGAGCTCAGGAGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR GCA 90 bp | GGAGAGGCTGGAGCCCACAATCCAGCCACAAAGGTACTGAGGAGGACACAGGCTAGGAAGCCAGCTTCCTaGAGTGCAGGCACCTGCGTC | + |
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Preference number: 4 (lower is better) Translates to: GEAGAHNPATKVLRRTQARKPAS*SAGTCV Trigger: GACGCAGGTGCCTGCACTGCAGGAAGCTGGCTTCCT...AGCCTGTGTCCTCCTCAGTACCTTTGTGGCTGGATTGTGGGCTCCAGCCTCTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR CCA 90 bp | ACTCCTGAGCTCTGGGAAGATGGCAGTGCCAGGCAGAGGTTAGGATGTCACACTGTAGCGGCAGTCGGCTaGGGGCACCAGTGCCATCAC | + |
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Preference number: 4 (lower is better) Translates to: TPELWEDGSARQRLGCHTVAAVG*GHQCHH Trigger: GTGATGGCACTGGTGCCCCCAGCCGACTGCCGCTAC...AGTGTGACATCCTAACCTCTGCCTGGCACTGCCATCTTCCCAGAGCTCAGGAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR GCA 90 bp | GAGCTCTGGGAAGATGGCAGTGCCAGGCAGAGGTTAGGATGTCACACTGAGGGAGGCTTGCCCAGGATTTaGAGGTGCGTGTCAGACGCG | + |
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Preference number: 4 (lower is better) Translates to: ELWEDGSARQRLGCHTEGGLPRI*RCVSDA Trigger: CGCGTCTGACACGCACCTGCAAATCCTGGGCAAGCC...TCCCTCAGTGTGACATCCTAACCTCTGCCTGGCACTGCCATCTTCCCAGAGCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR GCA 90 bp | GGAGAGGCTGGAGCCCACAATCCAGCCACAAAGGTACTGAGGAGGACACAGGCTTCTATGGGGGCCTGTTaGACCCTGGAGGCTGCAATG | + |
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Preference number: 4 (lower is better) Translates to: GEAGAHNPATKVLRRTQASMGAC*TLEAAM Trigger: CATTGCAGCCTCCAGGGTGCAACAGGCCCCCATAGA...AGCCTGTGTCCTCCTCAGTACCTTTGTGGCTGGATTGTGGGCTCCAGCCTCTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR GCA 90 bp | CACAATCCAGCCACAAAGGTACTGAGGAGGACACAGGCTCCTTGTAGACCTGGGGGCTTGCCCAGGATTTaGAGGTGCGTGTCAGACGCG | + |
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Preference number: 4 (lower is better) Translates to: HNPATKVLRRTQAPCRPGGLPRI*RCVSDA Trigger: CGCGTCTGACACGCACCTGCAAATCCTGGGCAAGCC...CCCAGGTCTACAAGGAGCCTGTGTCCTCCTCAGTACCTTTGTGGCTGGATTGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR GCA 90 bp | GCCCACAATCCAGCCACAAAGGTACTGAGGAGGACACAGGCTCCTTGTAGACCTGGCTGGGGGCACCAGTaGCATCACCTCTGTGCAGAT | + |
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Preference number: 4 (lower is better) Translates to: AHNPATKVLRRTQAPCRPGWGHQ*HHLCAD Trigger: ATCTGCACAGAGGTGATGGCACTGGTGCCCCCAGCC...AGGTCTACAAGGAGCCTGTGTCCTCCTCAGTACCTTTGTGGCTGGATTGTGGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR CCA 90 bp | CACAATCCAGCCACAAAGGTACTGAGGAGGACACAGGCTCCTTGTAGACCTGGGGGGCCTGTTGCACCCTaGAGGCTGCAATGGCCATAC | + |
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Preference number: 4 (lower is better) Translates to: HNPATKVLRRTQAPCRPGGPVAP*RLQWPY Trigger: GTATGGCCATTGCAGCCTCCAGGGTGCAACAGGCCC...CCCAGGTCTACAAGGAGCCTGTGTCCTCCTCAGTACCTTTGTGGCTGGATTGTG 58% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR CCA 90 bp | CACAATCCAGCCACAAAGGTACTGAGGAGGACACAGGCTCCTTGTAGACCTGGGGGGAACAACCTTATGTaGCTGCCGCAGGGCCCAGTC | + |
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Preference number: 4 (lower is better) Translates to: HNPATKVLRRTQAPCRPGGNNLM*LPQGPV Trigger: GACTGGGCCCTGCGGCAGCCACATAAGGTTGTTCCC...CCCAGGTCTACAAGGAGCCTGTGTCCTCCTCAGTACCTTTGTGGCTGGATTGTG 58% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR CCA 90 bp | GGAGCCCACAATCCAGCCACAAAGGTACTGAGGAGGACACAGGCTCCTTGTAGAGGGAACAACCTTATGTaGCTGCCGCAGGGCCCAGTC | + |
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Preference number: 4 (lower is better) Translates to: GAHNPATKVLRRTQAPCRGNNLM*LPQGPV Trigger: GACTGGGCCCTGCGGCAGCCACATAAGGTTGTTCCC...TCTACAAGGAGCCTGTGTCCTCCTCAGTACCTTTGTGGCTGGATTGTGGGCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR GCA 90 bp | CACAATCCAGCCACAAAGGTACTGAGGAGGACACAGGCTCCTTGTAGACCTGGGGCTCCATCACTGGCTTaGCCAGGATTTGCAGGTGCG | + |
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Preference number: 4 (lower is better) Translates to: HNPATKVLRRTQAPCRPGAPSLA*PGFAGA Trigger: CGCACCTGCAAATCCTGGGCAAGCCAGTGATGGAGC...CCCAGGTCTACAAGGAGCCTGTGTCCTCCTCAGTACCTTTGTGGCTGGATTGTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR CCA 90 bp | GAGCTCTGGGAAGATGGCAGTGCCAGGCAGAGGTTAGGATGTCACACTGAGGGACCAACGCTCCATCACTaGCTTGCCCAGGATTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: ELWEDGSARQRLGCHTEGPTLHH*LAQDLQ Trigger: CTGCAAATCCTGGGCAAGCCAGTGATGGAGCGTTGG...TCCCTCAGTGTGACATCCTAACCTCTGCCTGGCACTGCCATCTTCCCAGAGCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR TCA 90 bp | GAGCTCTGGGAAGATGGCAGTGCCAGGCAGAGGTTAGGATGTCACACTGAGGGAAGAATCCCATCAAAGTaGCCGTCAGGCAGGGTAGGT | + |
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Preference number: 4 (lower is better) Translates to: ELWEDGSARQRLGCHTEGRIPSK*PSGRVG Trigger: ACCTACCCTGCCTGACGGTCACTTTGATGGGATTCT...TCCCTCAGTGTGACATCCTAACCTCTGCCTGGCACTGCCATCTTCCCAGAGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR CCA 90 bp | CACAATCCAGCCACAAAGGTACTGAGGAGGACACAGGCTCCTTGTAGACCTGGGCCAACGCTCCATCACTaGCTTGCCCAGGATTTGCAG | + |
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Preference number: 4 (lower is better) Translates to: HNPATKVLRRTQAPCRPGPTLHH*LAQDLQ Trigger: CTGCAAATCCTGGGCAAGCCAGTGATGGAGCGTTGG...CCCAGGTCTACAAGGAGCCTGTGTCCTCCTCAGTACCTTTGTGGCTGGATTGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR TCA 90 bp | CAGTGGAGAGGCTGGAGCCCACAATCCAGCCACAAAGGTACTGAGGAGGACACAATAAAGTTGAACTGGTaGGTGTGCCAGGCCTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: QWRGWSPQSSHKGTEEDTIKLNW*VCQASS Trigger: TGAAGAGGCCTGGCACACTCACCAGTTCAACTTTAT...TGTGTCCTCCTCAGTACCTTTGTGGCTGGATTGTGGGCTCCAGCCTCTCCACTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR GCA 90 bp | AGCATTTATTTTACTCCTGAGCTCTGGGAAGATGGCAGTGCCAGGCAGAGGTTAGCTCCATCACTGGCTTaGCCAGGATTTGCAGGTGCG | + |
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Preference number: 4 (lower is better) Translates to: SIYFTPELWEDGSARQRLAPSLA*PGFAGA Trigger: CGCACCTGCAAATCCTGGGCAAGCCAGTGATGGAGC...TAACCTCTGCCTGGCACTGCCATCTTCCCAGAGCTCAGGAGTAAAATAAATGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR CCA 90 bp | GGAGCCCACAATCCAGCCACAAAGGTACTGAGGAGGACACAGGCTCCTTGTAGAGAAGGGGTAGGACCATaGGAAGAGAGCTTAATAAAG | + |
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Preference number: 4 (lower is better) Translates to: GAHNPATKVLRRTQAPCREGVGP*EESLIK Trigger: CTTTATTAAGCTCTCTTCCCATGGTCCTACCCCTTC...TCTACAAGGAGCCTGTGTCCTCCTCAGTACCTTTGTGGCTGGATTGTGGGCTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020359.7 |
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| CDS-3UTR TCA 90 bp | AGCATTTATTTTACTCCTGAGCTCTGGGAAGATGGCAGTGCCAGGCAGAGGTTAAGAATCCCATCAAAGTaGCCGTCAGGCAGGGTAGGT | + |
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Preference number: 4 (lower is better) Translates to: SIYFTPELWEDGSARQRLRIPSK*PSGRVG Trigger: ACCTACCCTGCCTGACGGTCACTTTGATGGGATTCT...TAACCTCTGCCTGGCACTGCCATCTTCCCAGAGCTCAGGAGTAAAATAAATGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR TCA 90 bp | ACTCCTGAGCTCTGGGAAGATGGCAGTGCCAGGCAGAGGTTAGGATGTCACACTAGCAAGCGGAAGGCATaGTTCTTAATAAAGTTGAAC | + |
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Preference number: 4 (lower is better) Translates to: TPELWEDGSARQRLGCHTSKRKA*FLIKLN Trigger: GTTCAACTTTATTAAGAATCATGCCTTCCGCTTGCT...AGTGTGACATCCTAACCTCTGCCTGGCACTGCCATCTTCCCAGAGCTCAGGAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000105363.8 |
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| CDS-3UTR TCA 90 bp | AGCATTTATTTTACTCCTGAGCTCTGGGAAGATGGCAGTGCCAGGCAGAGGTTAATAAAGTTGAACTGGTaGGTGTGCCAGGCCTCTTCA | + |
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Preference number: 4 (lower is better) Translates to: SIYFTPELWEDGSARQRLIKLNW*VCQASS Trigger: TGAAGAGGCCTGGCACACTCACCAGTTCAACTTTAT...TAACCTCTGCCTGGCACTGCCATCTTCCCAGAGCTCAGGAGTAAAATAAATGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS GCA 90 bp | CTAGCGCATGCATATAGGGGGTCTCCCAACGCTCCATCACTGGCTTaGCCAGGATTTGCAGGTGCGTGTCAGACGCGTCATAGGCCGCGG | + |
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Preference number: 5 (lower is better) Translates to: LAHAYRGSPNAPSLA*PGFAGACQTRHRPR Trigger: CCGCGGCCTATGACGCGTCTGACACGCACCTGCAAATCCTGGGCAAGCCAGTGATGGAGCGTTGGGAGACCCCCTATATGCATGCGCTAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS GCA 90 bp | CATAGTAGCGGCAGTCGGCTGGGGGCACCAGTGCCATCACCTCTGTaGAGATGTTTTCTTTCAGGAAGCCAGCTTCCTGCAGTGCAGGCA | + |
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Preference number: 5 (lower is better) Translates to: HSSGSRLGAPVPSPL*RCFLSGSQLPAVQA Trigger: TGCCTGCACTGCAGGAAGCTGGCTTCCTGAAAGAAAACATCTGCACAGAGGTGATGGCACTGGTGCCCCCAGCCGACTGCCGCTACTATG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR CAA 90 bp | GCCCACAATCCAGCCACAAAGGTACTGAGGAGGACACAGGCTCCTTGTAGACCTTGGCTTGCCCAGGATTaGCAGGTGCGTGTCAGACGC | + |
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Preference number: 5 (lower is better) Translates to: AHNPATKVLRRTQAPCRPWLAQD*QVRVRR Trigger: GCGTCTGACACGCACCTGCAAATCCTGGGCAAGCCA...AGGTCTACAAGGAGCCTGTGTCCTCCTCAGTACCTTTGTGGCTGGATTGTGGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR CAA 90 bp | CACAATCCAGCCACAAAGGTACTGAGGAGGACACAGGCTCCTTGTAGACCTGGGCTCTATGGGGGCCTGTaGCACCCTGGAGGCTGCAAT | + |
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Preference number: 5 (lower is better) Translates to: HNPATKVLRRTQAPCRPGLYGGL*HPGGCN Trigger: ATTGCAGCCTCCAGGGTGCAACAGGCCCCCATAGAG...CCCAGGTCTACAAGGAGCCTGTGTCCTCCTCAGTACCTTTGTGGCTGGATTGTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS GCA 90 bp | CATCTGAGGGAAGGCATAGTAGCGGCAGTCGGCTGGGGGCACCAGTaGCATCACCTCTGTGCAGATGTTTTCTTTCAGGAAGCCAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: HLREGIVAAVGWGHQ*HHLCADVFFQEASF Trigger: GAAGCTGGCTTCCTGAAAGAAAACATCTGCACAGAGGTGATGGCACTGGTGCCCCCAGCCGACTGCCGCTACTATGCCTTCCCTCAGATG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR CAA 90 bp | CTTGTTAGCATTTATTTTACTCCTGAGCTCTGGGAAGATGGCAGTGCCAGGCAGTGGCTTGCCCAGGATTaGCAGGTGCGTGTCAGACGC | + |
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Preference number: 5 (lower is better) Translates to: LVSIYFTPELWEDGSARQWLAQD*QVRVRR Trigger: GCGTCTGACACGCACCTGCAAATCCTGGGCAAGCCA...CTGCCTGGCACTGCCATCTTCCCAGAGCTCAGGAGTAAAATAAATGCTAACAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000105363.8 |
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| CDS-3UTR CAA 90 bp | GCCCACAATCCAGCCACAAAGGTACTGAGGAGGACACAGGCTCCTTGTAGACCTGTGATGTCTGTGTATTaGGACTTCATGAGCTCCCCC | + |
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Preference number: 5 (lower is better) Translates to: AHNPATKVLRRTQAPCRPVMSVY*DFMSSP Trigger: GGGGGAGCTCATGAAGTCCAAATACACAGACATCAC...AGGTCTACAAGGAGCCTGTGTCCTCCTCAGTACCTTTGTGGCTGGATTGTGGGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS-3UTR CAA 90 bp | GTCTTCTTGTTAGCATTTATTTTACTCCTGAGCTCTGGGAAGATGGCAGTGCCACTCTATGGGGGCCTGTaGCACCCTGGAGGCTGCAAT | + |
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Preference number: 5 (lower is better) Translates to: VFLLAFILLLSSGKMAVPLYGGL*HPGGCN Trigger: ATTGCAGCCTCCAGGGTGCAACAGGCCCCCATAGAG...TGGCACTGCCATCTTCCCAGAGCTCAGGAGTAAAATAAATGCTAACAAGAAGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000105363.8 |
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| CDS CAA 90 bp | CATATAGGGGGTCTCCCAACGCTCCATCACTGGCTTGCCCAGGATTaGCAGGTGCGTGTCAGACGCGTCATAGGCCGCGGGGGCCGCGCG | + |
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Preference number: 6 (lower is better) Translates to: HIGGLPTLHHWLAQD*QVRVRRVIGRGGRA Trigger: CGCGCGGCCCCCGCGGCCTATGACGCGTCTGACACGCACCTGCAAATCCTGGGCAAGCCAGTGATGGAGCGTTGGGAGACCCCCTATATG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS CAA 72 bp | GGTCTCCCAACGCTCCATCACTGGCTTGCCCAGGATTaGCAGGTGCGTGTCAGACGCGTCATAGGCCGCGGG | + |
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Preference number: 6 (lower is better) Translates to: GLPTLHHWLAQD*QVRVRRVIGRG Trigger: CCCGCGGCCTATGACGCGTCTGACACGCACCTGCAAATCCTGGGCAAGCCAGTGATGGAGCGTTGGGAGACC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS CCA 72 bp | CGCATGCATATAGGGGGTCTCCCAACGCTCCATCACTaGCTTGCCCAGGATTTGCAGGTGCGTGTCAGACGC | + |
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Preference number: 6 (lower is better) Translates to: RMHIGGLPTLHH*LAQDLQVRVRR Trigger: GCGTCTGACACGCACCTGCAAATCCTGGGCAAGCCAGTGATGGAGCGTTGGGAGACCCCCTATATGCATGCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS GCA 72 bp | GCATATAGGGGGTCTCCCAACGCTCCATCACTGGCTTaGCCAGGATTTGCAGGTGCGTGTCAGACGCGTCAT | + |
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Preference number: 6 (lower is better) Translates to: AYRGSPNAPSLA*PGFAGACQTRH Trigger: ATGACGCGTCTGACACGCACCTGCAAATCCTGGGCAAGCCAGTGATGGAGCGTTGGGAGACCCCCTATATGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS CCA 72 bp | GATCATCTGAGGGAAGGCATAGTAGCGGCAGTCGGCTaGGGGCACCAGTGCCATCACCTCTGTGCAGATGTT | + |
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Preference number: 6 (lower is better) Translates to: DHLREGIVAAVG*GHQCHHLCADV Trigger: AACATCTGCACAGAGGTGATGGCACTGGTGCCCCCAGCCGACTGCCGCTACTATGCCTTCCCTCAGATGATC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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| CDS GCA 72 bp | CACTCAATAATCCAGTGTTCCTCTATGGGGGCCTGTTaGACCCTGGAGGCTGCAATGGCCATACCGAAGCCC | + |
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Preference number: 6 (lower is better) Translates to: HSIIQCSSMGAC*TLEAAMAIPKP Trigger: GGGCTTCGGTATGGCCATTGCAGCCTCCAGGGTGCAACAGGCCCCCATAGAGGAACACTGGATTATTGAGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000020359.7 ENSMUST00000105363.8 |
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