Pregenerated sensors for GALR3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000114755Ensembl transcript IDs: ENSMUST00000058004.4
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | CTCCTTGGTGACATTCTACTGCCCAGGGAAGAAGACAGACCGACAGCTGTCAGAAGCCTGCGGCGAAGGTaGCCACGTCCAGCGCGCGCC | + |
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Preference number: 4 (lower is better) Translates to: LLGDILLPREEDRPTAVRSLRRR*PRPARA Trigger: GGCGCGCGCTGGACGTGGCCACCTTCGCCGCAGGCT...TCTGACAGCTGTCGGTCTGTCTTCTTCCCTGGGCAGTAGAATGTCACCAAGGAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS-3UTR TCA 90 bp | CCATGCCCTAGATGCTCCTTGGTGACATTCTACTGCCCAGGGAAGAAGACAGACCGTAGGTGGCCGGGCTaGAGGCGAAGCGGCCGTACC | + |
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Preference number: 4 (lower is better) Translates to: PCPRCSLVTFYCPGKKTDRRWPG*RRSGRT Trigger: GGTACGGCCGCTTCGCCTTCAGCCCGGCCACCTACG...GTCTGTCTTCTTCCCTGGGCAGTAGAATGTCACCAAGGAGCATCTAGGGCATGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS-3UTR TCA 90 bp | TGCTCCTTGGTGACATTCTACTGCCCAGGGAAGAAGACAGACCGACAGCTGTCAACCAGAAGCAGAGGATaGGCGCGTGGTGCGGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: CSLVTFYCPGKKTDRQLSTRSRG*ARGAGP Trigger: GGGGCCCGCACCACGCGCTCATCCTCTGCTTCTGGT...TGACAGCTGTCGGTCTGTCTTCTTCCCTGGGCAGTAGAATGTCACCAAGGAGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS-3UTR TCA 90 bp | ATGCTCCTTGGTGACATTCTACTGCCCAGGGAAGAAGACAGACCGACAGCTGTCCGACGGAGGGCTCGATaGAGGCGGTGGTGGTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: MLLGDILLPREEDRPTAVRRRAR*RRWWWW Trigger: CCACCACCACCACCGCCTTCATCGAGCCCTCCGTCG...GACAGCTGTCGGTCTGTCTTCTTCCCTGGGCAGTAGAATGTCACCAAGGAGCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS-3UTR GCA 90 bp | AGATGCTCCTTGGTGACATTCTACTGCCCAGGGAAGAAGACAGACCGACAGCTGCGGCAGCAGGTAGCCTaGGGCGAAGGTGGCCACGTC | + |
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Preference number: 4 (lower is better) Translates to: RCSLVTFYCPGKKTDRQLRQQVA*GEGGHV Trigger: GACGTGGCCACCTTCGCCGCAGGCTACCTGCTGCCG...CAGCTGTCGGTCTGTCTTCTTCCCTGGGCAGTAGAATGTCACCAAGGAGCATCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS-3UTR GCA 90 bp | TCCTTGGTGACATTCTACTGCCCAGGGAAGAAGACAGACCGACAGCTGTCAGAGAGAGATCCGTGGTACTaGCCGGTTCCTGCCAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: SLVTFYCPGKKTDRQLSERDPWY*PVPARH Trigger: GTGCCTGGCAGGAACCGGGCAGTACCACGGATCTCT...CTCTGACAGCTGTCGGTCTGTCTTCTTCCCTGGGCAGTAGAATGTCACCAAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS-3UTR GCA 90 bp | CCATGCCCTAGATGCTCCTTGGTGACATTCTACTGCCCAGGGAAGAAGACAGACACAGGAAGCACAGCGTaGGTCCGTAGGCCAGGCTCA | + |
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Preference number: 4 (lower is better) Translates to: PCPRCSLVTFYCPGKKTDTGSTA*VRRPGS Trigger: TGAGCCTGGCCTACGGACGCACGCTGTGCTTCCTGT...GTCTGTCTTCTTCCCTGGGCAGTAGAATGTCACCAAGGAGCATCTAGGGCATGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS-3UTR TCA 90 bp | AGATGCTCCTTGGTGACATTCTACTGCCCAGGGAAGAAGACAGACCGACAGCTGTGCCCAACAGGAAGATaGGGGCAAAGACCACCGGCA | + |
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Preference number: 4 (lower is better) Translates to: RCSLVTFYCPGKKTDRQLCPTGR*GQRPPA Trigger: TGCCGGTGGTCTTTGCCCTCATCTTCCTGTTGGGCA...CAGCTGTCGGTCTGTCTTCTTCCCTGGGCAGTAGAATGTCACCAAGGAGCATCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS-3UTR GCA 90 bp | GTGACATTCTACTGCCCAGGGAAGAAGACAGACCGACAGCTGTCAGAGTCTAAGCGCCGTAGCGCACCGTaGCGTAGTAGCTTAGGTAGG | + |
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Preference number: 4 (lower is better) Translates to: VTFYCPGKKTDRQLSESKRRSAP*RSSLGR Trigger: CCTACCTAAGCTACTACGGCACGGTGCGCTACGGCG...CTTAGACTCTGACAGCTGTCGGTCTGTCTTCTTCCCTGGGCAGTAGAATGTCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS-3UTR CCA 90 bp | TGCCCTAGATGCTCCTTGGTGACATTCTACTGCCCAGGGAAGAAGACAGACCGAAGCCCCTACGCTCCCTaGGCTGTCCAGCGAAATGTT | + |
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Preference number: 4 (lower is better) Translates to: CPRCSLVTFYCPGKKTDRSPYAP*AVQRNV Trigger: AACATTTCGCTGGACAGCCCAGGGAGCGTAGGGGCT...TCGGTCTGTCTTCTTCCCTGGGCAGTAGAATGTCACCAAGGAGCATCTAGGGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS GCA 90 bp | CAGCATGGCGCGCCCCGCGCGGCCGGTTGCCCGTCTGCGTGCCTCTaGCGCCGCCGCACCCGCGGGACCCACGGCGGCCCACAGGAAGCA | + |
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Preference number: 5 (lower is better) Translates to: QHGAPRAAGCPSACL*RRRTRGTHGGPQEA Trigger: TGCTTCCTGTGGGCCGCCGTGGGTCCCGCGGGTGCGGCGGCGGCAGAGGCACGCAGACGGGCAACCGGCCGCGCGGGGCGCGCCATGCTG 80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS GCA 90 bp | GTAGAGCGCGGCCACCGTCAGCATGGCGCGCCCCGCGCGGCCGGTTaGCCGTCTGCGTGCCTCTGCCGCCGCCGCACCCGCGGGACCCAC | + |
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Preference number: 5 (lower is better) Translates to: VERGHRQHGAPRAAG*PSACLCRRRTRGTH Trigger: GTGGGTCCCGCGGGTGCGGCGGCGGCAGAGGCACGCAGACGGGCAACCGGCCGCGCGGGGCGCGCCATGCTGACGGTGGCCGCGCTCTAC 80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS CCA 90 bp | GGTGCGGGCCCCAGCAGAGTGCGTAGAGCGCGGCCACCGTCAGCATaGCGCGCCCCGCGCGGCCGGTTGCCCGTCTGCGTGCCTCTGCCG | + |
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Preference number: 5 (lower is better) Translates to: GAGPSRVRRARPPSA*RAPRGRLPVCVPLP Trigger: CGGCAGAGGCACGCAGACGGGCAACCGGCCGCGCGGGGCGCGCCATGCTGACGGTGGCCGCGCTCTACGCACTCTGCTGGGGCCCGCACC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS CCA 90 bp | CCAGGCTCACCACGGTCACCGGCAGCAGGTAGCCTGCGGCGAAGGTaGCCACGTCCAGCGCGCGCCGCCGCGCGTCCTCCCAGGCGGGCA | + |
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Preference number: 5 (lower is better) Translates to: PGSPRSPAAGSLRRR*PRPARAAARPPRRA Trigger: TGCCCGCCTGGGAGGACGCGCGGCGGCGCGCGCTGGACGTGGCCACCTTCGCCGCAGGCTACCTGCTGCCGGTGACCGTGGTGAGCCTGG 77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS GCA 90 bp | GCGTCCGTAGGCCAGGCTCACCACGGTCACCGGCAGCAGGTAGCCTaGGGCGAAGGTGGCCACGTCCAGCGCGCGCCGCCGCGCGTCCTC | + |
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Preference number: 5 (lower is better) Translates to: ASVGQAHHGHRQQVA*GEGGHVQRAPPRVL Trigger: GAGGACGCGCGGCGGCGCGCGCTGGACGTGGCCACCTTCGCCGCAGGCTACCTGCTGCCGGTGACCGTGGTGAGCCTGGCCTACGGACGC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS GCA 90 bp | CCGCCGCACCCGCGGGACCCACGGCGGCCCACAGGAAGCACAGCGTaGGTCCGTAGGCCAGGCTCACCACGGTCACCGGCAGCAGGTAGC | + |
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Preference number: 5 (lower is better) Translates to: PPHPRDPRRPTGSTA*VRRPGSPRSPAAGS Trigger: GCTACCTGCTGCCGGTGACCGTGGTGAGCCTGGCCTACGGACGCACGCTGTGCTTCCTGTGGGCCGCCGTGGGTCCCGCGGGTGCGGCGG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS GCA 90 bp | CCTCCCAGGCGGGCACGCAGAGCTCGAGCGCGCCGTAGCGCACCGTaGCGTAGTAGCTTAGGTAGGGCGCGGAAAAGAGCGCCGCCAGCA | + |
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Preference number: 5 (lower is better) Translates to: PPRRARRARARRSAP*RSSLGRARKRAPPA Trigger: TGCTGGCGGCGCTCTTTTCCGCGCCCTACCTAAGCTACTACGGCACGGTGCGCTACGGCGCGCTCGAGCTCTGCGTGCCCGCCTGGGAGG 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS TCA 90 bp | GCACGGCCAACACCAGCCCATTACCCACCATGCCCAACAGGAAGATaGGGGCAAAGACCACCGGCACTGCCACAGCCCCTACGCTCCCTG | + |
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Preference number: 5 (lower is better) Translates to: ARPTPAHYPPCPTGR*GQRPPALPQPLRSL Trigger: CAGGGAGCGTAGGGGCTGTGGCAGTGCCGGTGGTCTTTGCCCTCATCTTCCTGTTGGGCATGGTGGGTAATGGGCTGGTGTTGGCCGTGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS-3UTR CAA 90 bp | CTCCTTGGTGACATTCTACTGCCCAGGGAAGAAGACAGACCGACAGCTGTCAGAAGCAGATGTACCGTCTaGCACACGAAAGCCCCAAAG | + |
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Preference number: 5 (lower is better) Translates to: LLGDILLPREEDRPTAVRSRCTV*HTKAPK Trigger: CTTTGGGGCTTTCGTGTGCAAGACGGTACATCTGCT...TCTGACAGCTGTCGGTCTGTCTTCTTCCCTGGGCAGTAGAATGTCACCAAGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS CCA 72 bp | CCCAGCAGAGTGCGTAGAGCGCGGCCACCGTCAGCATaGCGCGCCCCGCGCGGCCGGTTGCCCGTCTGCGTG | + |
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Preference number: 6 (lower is better) Translates to: PSRVRRARPPSA*RAPRGRLPVCV Trigger: CACGCAGACGGGCAACCGGCCGCGCGGGGCGCGCCATGCTGACGGTGGCCGCGCTCTACGCACTCTGCTGGG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS GCA 72 bp | CCGCGGGACCCACGGCGGCCCACAGGAAGCACAGCGTaGGTCCGTAGGCCAGGCTCACCACGGTCACCGGCA | + |
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Preference number: 6 (lower is better) Translates to: PRDPRRPTGSTA*VRRPGSPRSPA Trigger: TGCCGGTGACCGTGGTGAGCCTGGCCTACGGACGCACGCTGTGCTTCCTGTGGGCCGCCGTGGGTCCCGCGG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS GCA 72 bp | CGGGCACGCAGAGCTCGAGCGCGCCGTAGCGCACCGTaGCGTAGTAGCTTAGGTAGGGCGCGGAAAAGAGCG | + |
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Preference number: 6 (lower is better) Translates to: RARRARARRSAP*RSSLGRARKRA Trigger: CGCTCTTTTCCGCGCCCTACCTAAGCTACTACGGCACGGTGCGCTACGGCGCGCTCGAGCTCTGCGTGCCCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS TCA 72 bp | ACACCAGCCCATTACCCACCATGCCCAACAGGAAGATaGGGGCAAAGACCACCGGCACTGCCACAGCCCCTA | + |
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Preference number: 6 (lower is better) Translates to: TPAHYPPCPTGR*GQRPPALPQPL Trigger: TAGGGGCTGTGGCAGTGCCGGTGGTCTTTGCCCTCATCTTCCTGTTGGGCATGGTGGGTAATGGGCTGGTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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| CDS CCA 72 bp | AAAGACCACCGGCACTGCCACAGCCCCTACGCTCCCTaGGCTGTCCAGCGAAATGTTCTGGATGTCAGCCAT | + |
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Preference number: 6 (lower is better) Translates to: KDHRHCHSPYAP*AVQRNVLDVSH Trigger: ATGGCTGACATCCAGAACATTTCGCTGGACAGCCCAGGGAGCGTAGGGGCTGTGGCAGTGCCGGTGGTCTTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000058004.4 |
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