Pregenerated sensors for GALP (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034660

Ensembl transcript IDs: ENSMUST00000037553.6, ENSMUST00000130076.2

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TGGGAACATTCTTGTCCAGTATGTGCATATCTCCAGTATTCGCTTTaGCAAACGTTTCTCCCATTGTCCTTTTGGTCATCCTTGGAGAGT	+
Preference number: 5 (lower is better) Translates to: WEHSCPVCAYLQYSL*QTFLPLSFWSSLES Trigger: ACTCTCCAAGGATGACCAAAAGGACAATGGGAGAAACGTTTGTCAAAGCGAATACTGGAGATATGCACATACTGGACAAGAATGTTCCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037553.6
CDS CCA 72 bp	CAAGAGCTGAGTCTCTCTTCCTGCCCTGGTCGGCCTTaGAGGAAACGGGGAGGACAGGACCCAGGAGGTAAC	+
Preference number: 6 (lower is better) Translates to: QELSLSSCPGRP*RKRGGQDPGGN Trigger: GTTACCTCCTGGGTCCTGTCCTCCCCGTTTCCTCCAAGGCCGACCAGGGCAGGAAGAGAGACTCAGCTCTTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037553.6
CDS CCA 72 bp	CAAGAGCTGAGTCTCTCTTCCTGCCCTGGTCGGCCTTaGAGGAAACGGGGAGGACCTGTGAGCAGGTGCAGA	+
Preference number: 6 (lower is better) Translates to: QELSLSSCPGRP*RKRGGPVSRCR Trigger: TCTGCACCTGCTCACAGGTCCTCCCCGTTTCCTCCAAGGCCGACCAGGGCAGGAAGAGAGACTCAGCTCTTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130076.2
CDS CAA 72 bp	TCTGAGTCCAGGGTGGCTTCTTCCTTGGGAACATTCTaGTCCAGTATGTGCATATCTCCAGTATTCGCTTTG	+
Preference number: 6 (lower is better) Translates to: SESRVASSLGTF*SSMCISPVFAL Trigger: CAAAGCGAATACTGGAGATATGCACATACTGGACAAGAATGTTCCCAAGGAAGAAGCCACCCTGGACTCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037553.6
CDS TCA 72 bp	TCATCCTTGGAGAGTGGGAATAAGGAAGTCCATCAATaGTCTTCCACAGGTCTAGGATCTCAAGAGCTGAGT	+
Preference number: 6 (lower is better) Translates to: SSLESGNKEVHQ*SSTGLGSQELS Trigger: ACTCAGCTCTTGAGATCCTAGACCTGTGGAAGATCATTGATGGACTTCCTTATTCCCACTCTCCAAGGATGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000037553.6
CDS CAA 90 bp	TTGGGAACATTCTTGTCCAGTATGTGCATATCTCCAGTATTCGCTTaGACAAACGTTTCTCCCATTGTCCTTTTGGTCATCCTTGGAGAG	+
Preference number: 6 (lower is better) Translates to: LGTFLSSMCISPVFA*TNVSPIVLLVILGE Trigger: CTCTCCAAGGATGACCAAAAGGACAATGGGAGAAACGTTTGTCAAAGCGAATACTGGAGATATGCACATACTGGACAAGAATGTTCCCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037553.6
CDS TCA 72 bp	TCTTGTCCAGTATGTGCATATCTCCAGTATTCGCTTTaGCAAACGTTTCTCCCATTGTCCTTTTGGTCATCC	+
Preference number: 6 (lower is better) Translates to: SCPVCAYLQYSL*QTFLPLSFWSS Trigger: GGATGACCAAAAGGACAATGGGAGAAACGTTTGTCAAAGCGAATACTGGAGATATGCACATACTGGACAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037553.6
CDS CAA 72 bp	TTCTTGTCCAGTATGTGCATATCTCCAGTATTCGCTTaGACAAACGTTTCTCCCATTGTCCTTTTGGTCATC	+
Preference number: 6 (lower is better) Translates to: FLSSMCISPVFA*TNVSPIVLLVI Trigger: GATGACCAAAAGGACAATGGGAGAAACGTTTGTCAAAGCGAATACTGGAGATATGCACATACTGGACAAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000037553.6

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu