RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GALNT6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037280

Ensembl transcript IDs: ENSMUST00000052069.12, ENSMUST00000159715.8, ENSMUST00000161514.2

Found 307 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTaGCCCTACCGCCTGGAGGGCTTGTTGGGCCTGCACTGGAGGGTG +
Preference number: 1 (lower is better)
Translates to: RPPEDLGEKDSPDAW*PYRLEGLLGLHWRV
Trigger: CACCCTCCAGTGCAGGCCCAACAAGCCCTCCAGGCGGTAGGGTCACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR TCA 90 bp TGGCATCCTCGGGTCAGCTCTGCACAGGGCACTCAGGCAAGCAGATaGGATCAGCCCTCCAGGCAACTGCACGCTGTCCCTGACCCCTCA +
Preference number: 1 (lower is better)
Translates to: WHPRVSSAQGTQASR*DQPSRQLHAVPDPS
Trigger: TGAGGGGTCAGGGACAGCGTGCAGTTGCCTGGAGGGCTGATCTCATCTGCTTGCCTGAGTGCCCTGTGCAGAGCTGACCCGAGGATGCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR GCA 90 bp AGGCTCTCTGCCCTTCCAGTTCCTCTGCAGGACACACTCTCAGGCTaGTTTCGAGGCTCGTCTCTAGGAGAGGACAAAAGCCTTGGGCCA +
Preference number: 1 (lower is better)
Translates to: RLSALPVPLQDTLSG*FRGSSLGEDKSLGP
Trigger: TGGCCCAAGGCTTTTGTCCTCTCCTAGAGACGAGCCTCGAAAGCAGCCTGAGAGTGTGTCCTGCAGAGGAACTGGAAGGGCAGAGAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR TCA 90 bp GGCAAGCAGATGAGATCAGCCCTCCAGGCAACTGCACGCTGTCCCTaGCCCCTCAGACTTGCCACGACTCTGATTAGCCTTATCTTGGGT +
Preference number: 1 (lower is better)
Translates to: GKQMRSALQATARCP*PLRLATTLISLILG
Trigger: ACCCAAGATAAGGCTAATCAGAGTCGTGGCAAGTCTGAGGGGTCAGGGACAGCGTGCAGTTGCCTGGAGGGCTGATCTCATCTGCTTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR TCA 90 bp TGGATCACAACTCGGTCAGACTCTTTCCCTTGGCTGGGCTACCTCTaGTTGTCACCCAGGGGACAAGGGAGGCTTCCTGCAATGTGCCCT +
Preference number: 1 (lower is better)
Translates to: WITTRSDSFPWLGYL*LSPRGQGRLPAMCP
Trigger: AGGGCACATTGCAGGAAGCCTCCCTTGTCCCCTGGGTGACAATCAGAGGTAGCCCAGCCAAGGGAAAGAGTCTGACCGAGTTGTGATCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR CCA 90 bp TATTTCCACCAGGTTCCCAATCAGCCTCTCTTCCCTCTCCCACCTTaGATCACAACTCGGTCAGACTCTTTCCCTTGGCTGGGCTACCTC +
Preference number: 1 (lower is better)
Translates to: YFHQVPNQPLFPLPP*ITTRSDSFPWLGYL
Trigger: GAGGTAGCCCAGCCAAGGGAAAGAGTCTGACCGAGTTGTGATCCAAGGTGGGAGAGGGAAGAGAGGCTGATTGGGAACCTGGTGGAAATA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR CCA 90 bp AGGCCAGGATCTCAATGTGGTCTCCCATCTCGCTACCAGTCTTTCTaGAGGACAGACAGCCAGAATGATCAGAGAGGGGGTCAGGAAATG +
Preference number: 1 (lower is better)
Translates to: RPGSQCGLPSRYQSF*RTDSQNDQRGGQEM
Trigger: CATTTCCTGACCCCCTCTCTGATCATTCTGGCTGTCTGTCCTCCAGAAAGACTGGTAGCGAGATGGGAGACCACATTGAGATCCTGGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR TCA 90 bp GGCTCGTCTCTAGGAGAGGACAAAAGCCTTGGGCCAAGTAGCATGTaGCCTCCTGGTCTCTCCACTGATATGGAAGAAAGAAAATGGGAC +
Preference number: 1 (lower is better)
Translates to: GSSLGEDKSLGPSSM*PPGLSTDMEERKWD
Trigger: GTCCCATTTTCTTTCTTCCATATCAGTGGAGAGACCAGGAGGTCACATGCTACTTGGCCCAAGGCTTTTGTCCTCTCCTAGAGACGAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR GCA 90 bp ATCAAGAGGGTTTGCTTCAAAGATCTGCTAACAAGAGAGGCTCTCTaGCCTTCCAGTTCCTCTGCAGGACACACTCTCAGGCTGCTTTCG +
Preference number: 1 (lower is better)
Translates to: IKRVCFKDLLTREAL*PSSSSAGHTLRLLS
Trigger: CGAAAGCAGCCTGAGAGTGTGTCCTGCAGAGGAACTGGAAGGGCAGAGAGCCTCTCTTGTTAGCAGATCTTTGAAGCAAACCCTCTTGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR CCA 90 bp GAAAGAAAATGGGACCAGTGTTGTTGCAAGAAGAACATCCTGCCTTaGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGG +
Preference number: 1 (lower is better)
Translates to: ERKWDQCCCKKNILP*WPQGFKIQLSGLQR
Trigger: CCTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGTTCTTCTTGCAACAACACTGGTCCCATTTTCTTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR CCA 90 bp GCCTTGGGCCAAGTAGCATGTGACCTCCTGGTCTCTCCACTGATATaGAAGAAAGAAAATGGGACCAGTGTTGTTGCAAGAAGAACATCC +
Preference number: 1 (lower is better)
Translates to: ALGQVACDLLVSPLI*KKENGTSVVARRTS
Trigger: GGATGTTCTTCTTGCAACAACACTGGTCCCATTTTCTTTCTTCCATATCAGTGGAGAGACCAGGAGGTCACATGCTACTTGGCCCAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR GCA 90 bp GGTCTCTCCACTGATATGGAAGAAAGAAAATGGGACCAGTGTTGTTaGAAGAAGAACATCCTGCCTTGGTGGCCACAGGGCTTCAAAATC +
Preference number: 1 (lower is better)
Translates to: GLSTDMEERKWDQCC*KKNILPWWPQGFKI
Trigger: GATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGTTCTTCTTGCAACAACACTGGTCCCATTTTCTTTCTTCCATATCAGTGGAGAGACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR TCA 90 bp TTTCTCCCTGTCTCCTCCATAGATAACTGTGCAAATGACATAGGATaGAGGCACTCTGTGTATACACATCAAGAGGGTTTGCTTCAAAGA +
Preference number: 1 (lower is better)
Translates to: FLPVSSIDNCANDIG*RHSVYTHQEGLLQR
Trigger: TCTTTGAAGCAAACCCTCTTGATGTGTATACACAGAGTGCCTTCATCCTATGTCATTTGCACAGTTATCTATGGAGGAGACAGGGAGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR-3UTR CCA 90 bp AGAACATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCGGTGACCCTACCGCCTaGAGGGCTTGTTGGGCCTGC +
Preference number: 2 (lower is better)
Translates to: RTSCLGGHRASKSNSQASGDPTA*RACWAC
Trigger: GCAGGCCCAACAAGCCCTCCAGGCGGTAGGGTCACC...GGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGTTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR-3UTR CCA 90 bp CACCCAGGGGACAAGGGAGGCTTCCTGCAATGTGCCCTTGCATGGAGCAGGAGGTGCCGGAAGGAACCCTaGTACAGCACCAAAGATGGG +
Preference number: 2 (lower is better)
Translates to: HPGDKGGFLQCALAWSRRCRKEP*YSTKDG
Trigger: CCCATCTTTGGTGCTGTACCAGGGTTCCTTCCGGCA...CCTCCTGCTCCATGCAAGGGCACATTGCAGGAAGCCTCCCTTGTCCCCTGGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR-3UTR TCA 90 bp CTCAGGCAAGCAGATGAGATCAGCCCTCCAGGCAACTGCACGCTGTCCCTGACCGACAGACAGCCAGAATaGTCAGAGAGGGGGTCAGGA +
Preference number: 2 (lower is better)
Translates to: LRQADEISPPGNCTLSLTDRQPE*SERGSG
Trigger: TCCTGACCCCCTCTCTGATCATTCTGGCTGTCTGTC...GGTCAGGGACAGCGTGCAGTTGCCTGGAGGGCTGATCTCATCTGCTTGCCTGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR-3UTR GCA 90 bp TGCCCTTCCAGTTCCTCTGCAGGACACACTCTCAGGCTGCTTTCGAGGCTCGTCGCAAGAAGAACATCCTaGCTTGGTGGCCACAGGGCT +
Preference number: 2 (lower is better)
Translates to: CPSSSSAGHTLRLLSRLVARRTS*LGGHRA
Trigger: AGCCCTGTGGCCACCAAGGCAGGATGTTCTTCTTGC...GACGAGCCTCGAAAGCAGCCTGAGAGTGTGTCCTGCAGAGGAACTGGAAGGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR-3UTR CCA 90 bp TGCCTTAGTTCAGGGGCTGCAAGGCAGTCCCCTGCATATTCTCCATGCTGTTTTGGTGACCCTACCGCCTaGAGGGCTTGTTGGGCCTGC +
Preference number: 2 (lower is better)
Translates to: CLSSGAARQSPAYSPCCFGDPTA*RACWAC
Trigger: GCAGGCCCAACAAGCCCTCCAGGCGGTAGGGTCACC...AAAACAGCATGGAGAATATGCAGGGGACTGCCTTGCAGCCCCTGAACTAAGGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR-3UTR GCA 90 bp CTTCCCTCTCCCACCTTGGATCACAACTCGGTCAGACTCTTTCCCTTGGCTGGGAGGCTTCCTGCAATGTaGCCTTGCATGGAGCAGGAG +
Preference number: 2 (lower is better)
Translates to: LPSPTLDHNSVRLFPLAGRLPAM*PCMEQE
Trigger: CTCCTGCTCCATGCAAGGGCACATTGCAGGAAGCCT...CCCAGCCAAGGGAAAGAGTCTGACCGAGTTGTGATCCAAGGTGGGAGAGGGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR-3UTR CCA 90 bp CACCCAGGGGACAAGGGAGGCTTCCTGCAATGTGCCCTTGCATGGAGCAGGAGGCCCCTAAAGCCTTCCTaGACATTTCTATTTTCTTCC +
Preference number: 2 (lower is better)
Translates to: HPGDKGGFLQCALAWSRRPLKPS*TFLFSS
Trigger: GGAAGAAAATAGAAATGTCCAGGAAGGCTTTAGGGG...CCTCCTGCTCCATGCAAGGGCACATTGCAGGAAGCCTCCCTTGTCCCCTGGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR-3UTR CCA 90 bp GCTGCTTTAGTCTCTGAGCACCGAGGCTGCAGACCTGTGCCTTCATGCCTAGCTAACCTTCTCAATGGATaGCTCCTTTCTCCCTGTCTC +
Preference number: 2 (lower is better)
Translates to: AALVSEHRGCRPVPSCLANLLNG*LLSPCL
Trigger: GAGACAGGGAGAAAGGAGCCATCCATTGAGAAGGTT...AGCTAGGCATGAAGGCACAGGTCTGCAGCCTCGGTGCTCAGAGACTAAAGCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR-3UTR CCA 90 bp TTGCATGGAGCAGGAGGCAGCCATGGTCCCATGCTGAAGTCCCCTAAAGCCTTCTCTCAACCTTCTCAATaGATGGCTCCTTTCTCCCTG +
Preference number: 2 (lower is better)
Translates to: LHGAGGSHGPMLKSPKAFSQPSQ*MAPFSL
Trigger: CAGGGAGAAAGGAGCCATCCATTGAGAAGGTTGAGA...GAAGGCTTTAGGGGACTTCAGCATGGGACCATGGCTGCCTCCTGCTCCATGCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR CAA 90 bp GGACATTTCTATTTTCTTCCAGGCAGAGTGACAGTGGGGTCCAAGTaGATTGTAGAAAGGCTGGCATCCTCGGGTCAGCTCTGCACAGGG +
Preference number: 2 (lower is better)
Translates to: GHFYFLPGRVTVGSK*IVERLASSGQLCTG
Trigger: CCCTGTGCAGAGCTGACCCGAGGATGCCAGCCTTTCTACAATCAACTTGGACCCCACTGTCACTCTGCCTGGAAGAAAATAGAAATGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR-3UTR TCA 90 bp CACCGAGGCTGCAGACCTGTGCCTTCATGCCTAGCTCCTGCTTCAGCCTATTACAGCTGTCTCAGCTCATaGACTTCTTTCCACACTAAC +
Preference number: 2 (lower is better)
Translates to: HRGCRPVPSCLAPASAYYSCLSS*TSFHTN
Trigger: GTTAGTGTGGAAAGAAGTTCATGAGCTGAGACAGCT...GTAATAGGCTGAAGCAGGAGCTAGGCATGAAGGCACAGGTCTGCAGCCTCGGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR-3UTR GCA 90 bp AATACCATAAAACCTTTATTTCCACCAGGTTCCCAATCAGCCTCTCTTCCCTCTAGCCCTCCAGGCAACTaGACGCTGTCCCTGACCCCT +
Preference number: 2 (lower is better)
Translates to: NTIKPLFPPGSQSASLPSSPPGN*TLSLTP
Trigger: AGGGGTCAGGGACAGCGTGCAGTTGCCTGGAGGGCT...AGAGGGAAGAGAGGCTGATTGGGAACCTGGTGGAAATAAAGGTTTTATGGTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR-3UTR CCA 90 bp GAAGGCACTCTGTGTATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACAGGCCTCCAGAGGATCTaGGGGAGAAGGACTCCCCAG +
Preference number: 2 (lower is better)
Translates to: EGTLCIHIKRVCFKDLLTGLQRI*GRRTPQ
Trigger: CTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCC...TGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATACACAGAGTGCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR-3UTR CCA 90 bp TATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACAAGAGAGGCTCTCTGGGCCTCCAGAGGATCTaGGGGAGAAGGACTCCCCAG +
Preference number: 2 (lower is better)
Translates to: YTHQEGLLQRSANKRGSLGLQRI*GRRTPQ
Trigger: CTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCC...CAGAGAGCCTCTCTTGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR-3UTR TCA 90 bp AGGGGGTCAGGAAATGGCATGGCTGGCAGCTCGCTGTTTAGTGTTTTTATGTGCCTCAGAGCCTTTCCCTaGACTATATACTCCACCTCA +
Preference number: 2 (lower is better)
Translates to: RGSGNGMAGSSLFSVFMCLRAFP*TIYSTS
Trigger: TGAGGTGGAGTATATAGTTCAGGGAAAGGCTCTGAG...GCACATAAAAACACTAAACAGCGAGCTGCCAGCCATGCCATTTCCTGACCCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR-3UTR GCA 90 bp GGCCAAGTAGCATGTGACCTCCTGGTCTCTCCACTGATATGGAAGAAAGAAAATGCAAGAAGAACATCCTaGCTTGGTGGCCACAGGGCT +
Preference number: 2 (lower is better)
Translates to: GQVACDLLVSPLIWKKENARRTS*LGGHRA
Trigger: AGCCCTGTGGCCACCAAGGCAGGATGTTCTTCTTGC...ATTTTCTTTCTTCCATATCAGTGGAGAGACCAGGAGGTCACATGCTACTTGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR-3UTR CCA 90 bp AGGGGGTCAGGAAATGGCATGGCTGGCAGCTCGCTGTTTAGTGTTTTTATGTGCAACCTTCTCAATGGATaGCTCCTTTCTCCCTGTCTC +
Preference number: 2 (lower is better)
Translates to: RGSGNGMAGSSLFSVFMCNLLNG*LLSPCL
Trigger: GAGACAGGGAGAAAGGAGCCATCCATTGAGAAGGTT...GCACATAAAAACACTAAACAGCGAGCTGCCAGCCATGCCATTTCCTGACCCCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR-3UTR GCA 90 bp ACCAATACCATAAAACCTTTATTTCCACCAGGTTCCCAATCAGCCTCTCTTCCCCGCAGAAAAGCCCTCTaGCTCCCTATGTCCCTCTCT +
Preference number: 2 (lower is better)
Translates to: TNTIKPLFPPGSQSASLPRRKAL*LPMSLS
Trigger: AGAGAGGGACATAGGGAGGCAGAGGGCTTTTCTGCG...GGGAAGAGAGGCTGATTGGGAACCTGGTGGAAATAAAGGTTTTATGGTATTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000159715.8
3UTR-3UTR GCA 90 bp ACCAATACCATAAAACCTTTATTTCCACCAGGTTCCCAATCAGCCTCTCTTCCCACAAGGGAGGCTTCCTaGAATGTGCCCTTGCATGGA +
Preference number: 2 (lower is better)
Translates to: TNTIKPLFPPGSQSASLPTREAS*NVPLHG
Trigger: TCCATGCAAGGGCACATTGCAGGAAGCCTCCCTTGT...GGGAAGAGAGGCTGATTGGGAACCTGGTGGAAATAAAGGTTTTATGGTATTGGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159715.8
3UTR-3UTR CCA 90 bp ACCAATACCATAAAACCTTTATTTCCACCAGGTTCCCAATCAGCCTCTCTTCCCACTCTTTCCCTTGGCTaGGCTACCTCTGATTGTCAC +
Preference number: 2 (lower is better)
Translates to: TNTIKPLFPPGSQSASLPTLSLG*ATSDCH
Trigger: GTGACAATCAGAGGTAGCCCAGCCAAGGGAAAGAGT...GGGAAGAGAGGCTGATTGGGAACCTGGTGGAAATAAAGGTTTTATGGTATTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159715.8
3UTR-3UTR TCA 90 bp TATTTTCTTCCAGGCAGAGTGACAGTGGGGTCCAAGTTGATTGTAGAAAGGCTGAGCTGTCTCAGCTCATaGACTTCTTTCCACACTAAC +
Preference number: 2 (lower is better)
Translates to: YFLPGRVTVGSKLIVERLSCLSS*TSFHTN
Trigger: GTTAGTGTGGAAAGAAGTTCATGAGCTGAGACAGCT...CAGCCTTTCTACAATCAACTTGGACCCCACTGTCACTCTGCCTGGAAGAAAATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR-3UTR CCA 90 bp TATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACAAGAGAGGCTCTCTGAAGAACATCCTGCCTTaGTGGCCACAGGGCTTCAAA +
Preference number: 2 (lower is better)
Translates to: YTHQEGLLQRSANKRGSLKNILP*WPQGFK
Trigger: TTTGAAGCCCTGTGGCCACCAAGGCAGGATGTTCTT...CAGAGAGCCTCTCTTGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR CAA 90 bp CTGATTAGCCTTATCTTGGGTCTAAGCTTGGAACTGCTAAACATCTaGCCAGGTGACCTTGGACAAAACACCTATCTAGTTTCTGCTGAG +
Preference number: 2 (lower is better)
Translates to: LISLILGLSLELLNI*PGDLGQNTYLVSAE
Trigger: CTCAGCAGAAACTAGATAGGTGTTTTGTCCAAGGTCACCTGGCAAGATGTTTAGCAGTTCCAAGCTTAGACCCAAGATAAGGCTAATCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR-3UTR CCA 90 bp AATACCATAAAACCTTTATTTCCACCAGGTTCCCAATCAGCCTCTCTTCCCTCTGTCTCTCCACTGATATaGAAGAAAGAAAATGGGACC +
Preference number: 2 (lower is better)
Translates to: NTIKPLFPPGSQSASLPSVSPLI*KKENGT
Trigger: GGTCCCATTTTCTTTCTTCCATATCAGTGGAGAGAC...AGAGGGAAGAGAGGCTGATTGGGAACCTGGTGGAAATAAAGGTTTTATGGTATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR-3UTR CAA 90 bp CCCTTCCAGTTCCTCTGCAGGACACACTCTCAGGCTGCTTTCGAGGCTCGTCTCCGCCTGGAGGGCTTGTaGGGCCTGCACTGGAGGGTG +
Preference number: 3 (lower is better)
Translates to: PFQFLCRTHSQAAFEARLRLEGL*GLHWRV
Trigger: CACCCTCCAGTGCAGGCCCAACAAGCCCTCCAGGCG...GAGACGAGCCTCGAAAGCAGCCTGAGAGTGTGTCCTGCAGAGGAACTGGAAGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR-3UTR CAA 90 bp CTCAGGCAAGCAGATGAGATCAGCCCTCCAGGCAACTGCACGCTGTCCCTGACCTACCGCCTGGAGGGCTaGTTGGGCCTGCACTGGAGG +
Preference number: 3 (lower is better)
Translates to: LRQADEISPPGNCTLSLTYRLEG*LGLHWR
Trigger: CCTCCAGTGCAGGCCCAACAAGCCCTCCAGGCGGTA...GGTCAGGGACAGCGTGCAGTTGCCTGGAGGGCTGATCTCATCTGCTTGCCTGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR-3UTR CAA 90 bp CATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGCGCCTGGAGGGCTTGTaGGGCCTGCACTGGAGGGTG +
Preference number: 3 (lower is better)
Translates to: HPALVATGLQNPTLRPPERLEGL*GLHWRV
Trigger: CACCCTCCAGTGCAGGCCCAACAAGCCCTCCAGGCG...CTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR-3UTR CAA 90 bp CCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGCGCCTGGAGGGCTTGTaGGGCCTGCACTGGAGGGTG +
Preference number: 3 (lower is better)
Translates to: PQGFKIQLSGLQRIWGRRRLEGL*GLHWRV
Trigger: CACCCTCCAGTGCAGGCCCAACAAGCCCTCCAGGCG...CCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR-3UTR CAA 90 bp CTTCCCTCTCCCACCTTGGATCACAACTCGGTCAGACTCTTTCCCTTGGCTGGGTACCGCCTGGAGGGCTaGTTGGGCCTGCACTGGAGG +
Preference number: 3 (lower is better)
Translates to: LPSPTLDHNSVRLFPLAGYRLEG*LGLHWR
Trigger: CCTCCAGTGCAGGCCCAACAAGCCCTCCAGGCGGTA...CCCAGCCAAGGGAAAGAGTCTGACCGAGTTGTGATCCAAGGTGGGAGAGGGAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR GCA 72 bp CTCAGGCAAGCAGATGAGATCAGCCCTCCAGGCAACTaGACGCTGTCCCTGACCCCTCAGACTTGCCACGAC +
Preference number: 3 (lower is better)
Translates to: LRQADEISPPGN*TLSLTPQTCHD
Trigger: GTCGTGGCAAGTCTGAGGGGTCAGGGACAGCGTGCAGTTGCCTGGAGGGCTGATCTCATCTGCTTGCCTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR GCA 72 bp TTGTCACCCAGGGGACAAGGGAGGCTTCCTGCAATGTaGCCTTGCATGGAGCAGGAGGCAGCCATGGTCCCA +
Preference number: 3 (lower is better)
Translates to: LSPRGQGRLPAM*PCMEQEAAMVP
Trigger: TGGGACCATGGCTGCCTCCTGCTCCATGCAAGGGCACATTGCAGGAAGCCTCCCTTGTCCCCTGGGTGACAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR CCA 72 bp GGGGACAAGGGAGGCTTCCTGCAATGTGCCCTTGCATaGAGCAGGAGGCAGCCATGGTCCCATGCTGAAGTC +
Preference number: 3 (lower is better)
Translates to: GDKGGFLQCALA*SRRQPWSHAEV
Trigger: GACTTCAGCATGGGACCATGGCTGCCTCCTGCTCCATGCAAGGGCACATTGCAGGAAGCCTCCCTTGTCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR-3UTR CAA 90 bp CACCCAGGGGACAAGGGAGGCTTCCTGCAATGTGCCCTTGCATGGAGCAGGAGGGAAGAACATCCTGCCTaGGTGGCCACAGGGCTTCAA +
Preference number: 3 (lower is better)
Translates to: HPGDKGGFLQCALAWSRREEHPA*VATGLQ
Trigger: TTGAAGCCCTGTGGCCACCAAGGCAGGATGTTCTTC...CCTCCTGCTCCATGCAAGGGCACATTGCAGGAAGCCTCCCTTGTCCCCTGGGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR TCA 72 bp ACTCGGTCAGACTCTTTCCCTTGGCTGGGCTACCTCTaGTTGTCACCCAGGGGACAAGGGAGGCTTCCTGCA +
Preference number: 3 (lower is better)
Translates to: TRSDSFPWLGYL*LSPRGQGRLPA
Trigger: TGCAGGAAGCCTCCCTTGTCCCCTGGGTGACAATCAGAGGTAGCCCAGCCAAGGGAAAGAGTCTGACCGAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR GCA 72 bp GCCCTTCCAGTTCCTCTGCAGGACACACTCTCAGGCTaGTTTCGAGGCTCGTCTCTAGGAGAGGACAAAAGC +
Preference number: 3 (lower is better)
Translates to: ALPVPLQDTLSG*FRGSSLGEDKS
Trigger: GCTTTTGTCCTCTCCTAGAGACGAGCCTCGAAAGCAGCCTGAGAGTGTGTCCTGCAGAGGAACTGGAAGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR GCA 72 bp GCTAACAAGAGAGGCTCTCTGCCCTTCCAGTTCCTCTaGAGGACACACTCTCAGGCTGCTTTCGAGGCTCGT +
Preference number: 3 (lower is better)
Translates to: ANKRGSLPFQFL*RTHSQAAFEAR
Trigger: ACGAGCCTCGAAAGCAGCCTGAGAGTGTGTCCTGCAGAGGAACTGGAAGGGCAGAGAGCCTCTCTTGTTAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR-3UTR CAA 90 bp CTCAGGCAAGCAGATGAGATCAGCCCTCCAGGCAACTGCACGCTGTCCCTGACCGAACTGCTAAACATCTaGCCAGGTGACCTTGGACAA +
Preference number: 3 (lower is better)
Translates to: LRQADEISPPGNCTLSLTELLNI*PGDLGQ
Trigger: TTGTCCAAGGTCACCTGGCAAGATGTTTAGCAGTTC...GGTCAGGGACAGCGTGCAGTTGCCTGGAGGGCTGATCTCATCTGCTTGCCTGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR-3UTR CAA 90 bp GGCTGGGCTACCTCTGATTGTCACCCAGGGGACAAGGGAGGCTTCCTGCAATGTACAGTGGGGTCCAAGTaGATTGTAGAAAGGCTGGCA +
Preference number: 3 (lower is better)
Translates to: GWATSDCHPGDKGGFLQCTVGSK*IVERLA
Trigger: TGCCAGCCTTTCTACAATCAACTTGGACCCCACTGT...ACATTGCAGGAAGCCTCCCTTGTCCCCTGGGTGACAATCAGAGGTAGCCCAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR GCA 72 bp GTCTCTGAGCACCGAGGCTGCAGACCTGTGCCTTCATaGCTAGCTCCTGCTTCAGCCTATTACTCTCCTTGT +
Preference number: 3 (lower is better)
Translates to: VSEHRGCRPVPS*LAPASAYYSPC
Trigger: ACAAGGAGAGTAATAGGCTGAAGCAGGAGCTAGGCATGAAGGCACAGGTCTGCAGCCTCGGTGCTCAGAGAC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR GCA 72 bp TTGATTGTAGAAAGGCTGGCATCCTCGGGTCAGCTCTaGACAGGGCACTCAGGCAAGCAGATGAGATCAGCC +
Preference number: 3 (lower is better)
Translates to: LIVERLASSGQL*TGHSGKQMRSA
Trigger: GGCTGATCTCATCTGCTTGCCTGAGTGCCCTGTGCAGAGCTGACCCGAGGATGCCAGCCTTTCTACAATCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR CCA 72 bp TATGTGCCGGAAGGAACCCTGGTACAGCACCAAAGATaGGGACTCAACCCCAGCTTGAGCCACCTATCAGCT +
Preference number: 3 (lower is better)
Translates to: YVPEGTLVQHQR*GLNPSLSHLSA
Trigger: AGCTGATAGGTGGCTCAAGCTGGGGTTGAGTCCCCATCTTTGGTGCTGTACCAGGGTTCCTTCCGGCACATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR TCA 72 bp TGTCCTTGGAGCTTAAGACCTTGCTGCTTTAGTCTCTaGGCACCGAGGCTGCAGACCTGTGCCTTCATGCCT +
Preference number: 3 (lower is better)
Translates to: CPWSLRPCCFSL*APRLQTCAFMP
Trigger: AGGCATGAAGGCACAGGTCTGCAGCCTCGGTGCTCAGAGACTAAAGCAGCAAGGTCTTAAGCTCCAAGGACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR GCA 72 bp GGCATGGCTGGCAGCTCGCTGTTTAGTGTTTTTATGTaGCGGAAGGAACCCTGGTACAGCACCAAAGATGGG +
Preference number: 3 (lower is better)
Translates to: GMAGSSLFSVFM*RKEPWYSTKDG
Trigger: CCCATCTTTGGTGCTGTACCAGGGTTCCTTCCGGCACATAAAAACACTAAACAGCGAGCTGCCAGCCATGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR TCA 72 bp GACCTGGGCTTGAGGCTCACCAGCTGTCTCAGCTCATaGACTTCTTTCCACACTAACAGGCCAGGATCTCAA +
Preference number: 3 (lower is better)
Translates to: DLGLRLTSCLSS*TSFHTNRPGSQ
Trigger: TTGAGATCCTGGCCTGTTAGTGTGGAAAGAAGTTCATGAGCTGAGACAGCTGGTGAGCCTCAAGCCCAGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR TCA 72 bp CCTTGCATGGAGCAGGAGGCAGCCATGGTCCCATGCTaGAGTCCCCTAAAGCCTTCCTGGACATTTCTATTT +
Preference number: 3 (lower is better)
Translates to: PCMEQEAAMVPC*SPLKPSWTFLF
Trigger: AAATAGAAATGTCCAGGAAGGCTTTAGGGGACTTCAGCATGGGACCATGGCTGCCTCCTGCTCCATGCAAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR CCA 72 bp GACCAGTGTTGTTGCAAGAAGAACATCCTGCCTTGGTaGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTC +
Preference number: 3 (lower is better)
Translates to: DQCCCKKNILPW*PQGFKIQLSGL
Trigger: GAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGTTCTTCTTGCAACAACACTGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR CCA 72 bp TGGGACCAGTGTTGTTGCAAGAAGAACATCCTGCCTTaGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGC +
Preference number: 3 (lower is better)
Translates to: WDQCCCKKNILP*WPQGFKIQLSG
Trigger: GCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGTTCTTCTTGCAACAACACTGGTCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR CCA 72 bp TCTCAATGTGGTCTCCCATCTCGCTACCAGTCTTTCTaGAGGACAGACAGCCAGAATGATCAGAGAGGGGGT +
Preference number: 3 (lower is better)
Translates to: SQCGLPSRYQSF*RTDSQNDQRGG
Trigger: ACCCCCTCTCTGATCATTCTGGCTGTCTGTCCTCCAGAAAGACTGGTAGCGAGATGGGAGACCACATTGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR TCA 72 bp CTAGGAGAGGACAAAAGCCTTGGGCCAAGTAGCATGTaGCCTCCTGGTCTCTCCACTGATATGGAAGAAAGA +
Preference number: 3 (lower is better)
Translates to: LGEDKSLGPSSM*PPGLSTDMEER
Trigger: TCTTTCTTCCATATCAGTGGAGAGACCAGGAGGTCACATGCTACTTGGCCCAAGGCTTTTGTCCTCTCCTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR GCA 72 bp GAAAATGGGACCAGTGTTGTTGCAAGAAGAACATCCTaGCTTGGTGGCCACAGGGCTTCAAAATCCAACTCT +
Preference number: 3 (lower is better)
Translates to: ENGTSVVARRTS*LGGHRASKSNS
Trigger: AGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGTTCTTCTTGCAACAACACTGGTCCCATTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR-3UTR CAA 90 bp GAAGGCACTCTGTGTATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACAGAAGAACATCCTGCCTaGGTGGCCACAGGGCTTCAA +
Preference number: 3 (lower is better)
Translates to: EGTLCIHIKRVCFKDLLTEEHPA*VATGLQ
Trigger: TTGAAGCCCTGTGGCCACCAAGGCAGGATGTTCTTC...TGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATACACAGAGTGCCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR-3UTR CAA 90 bp AATACCATAAAACCTTTATTTCCACCAGGTTCCCAATCAGCCTCTCTTCCCTCTACAGTGGGGTCCAAGTaGATTGTAGAAAGGCTGGCA +
Preference number: 3 (lower is better)
Translates to: NTIKPLFPPGSQSASLPSTVGSK*IVERLA
Trigger: TGCCAGCCTTTCTACAATCAACTTGGACCCCACTGT...AGAGGGAAGAGAGGCTGATTGGGAACCTGGTGGAAATAAAGGTTTTATGGTATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR CCA 72 bp CAAGTAGCATGTGACCTCCTGGTCTCTCCACTGATATaGAAGAAAGAAAATGGGACCAGTGTTGTTGCAAGA +
Preference number: 3 (lower is better)
Translates to: QVACDLLVSPLI*KKENGTSVVAR
Trigger: TCTTGCAACAACACTGGTCCCATTTTCTTTCTTCCATATCAGTGGAGAGACCAGGAGGTCACATGCTACTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR TCA 72 bp GTCTCCTCCATAGATAACTGTGCAAATGACATAGGATaGAGGCACTCTGTGTATACACATCAAGAGGGTTTG +
Preference number: 3 (lower is better)
Translates to: VSSIDNCANDIG*RHSVYTHQEGL
Trigger: CAAACCCTCTTGATGTGTATACACAGAGTGCCTTCATCCTATGTCATTTGCACAGTTATCTATGGAGGAGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp GCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGACCCTACCGGTGAGCACCTCTGCCTaGGCCACGCTGGCCCCCAGC +
Preference number: 4 (lower is better)
Translates to: ASRGSGGEGLPRRLVTLPVSTSA*ATLAPS
Trigger: GCTGGGGGCCAGCGTGGCGCAGGCAGAGGTGCTCAC...CGGTAGGGTCACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp AAATCCAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCGTGAGCACCTCTGCCTaGGCCACGCTGGCCCCCAGC +
Preference number: 4 (lower is better)
Translates to: KSNSQASRGSGGEGLPRRVSTSA*ATLAPS
Trigger: GCTGGGGGCCAGCGTGGCGCAGGCAGAGGTGCTCAC...GCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTGGATTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp CCCAGACGCCTGGTGACCCTACCGCCTGGAGGGCTTGTTGGGCCTGCACTGGAGATGAAGTCCAGGACCTaGTCCTTCTGGCCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: PRRLVTLPPGGLVGPALEMKSRT*SFWPAR
Trigger: CCTGGCTGGCCAGAAGGACCAGGTCCTGGACTTCAT...CTCCAGTGCAGGCCCAACAAGCCCTCCAGGCGGTAGGGTCACCAGGCGTCTGGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp CCAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGCTGCCCCAGGGCTGTTaGGATCTTGAGGTGGCCGGT +
Preference number: 4 (lower is better)
Translates to: PTLRPPEDLGEKDSPDAWLPQGC*DLEVAG
Trigger: ACCGGCCACCTCAAGATCCCAACAGCCCTGGGGCAG...CCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp CTCAGGCAAGCAGATGAGATCAGCCCTCCAGGCAACTGCACGCTGTCCCTGACCGCTGGTGGTGGGCAGTaGCGGGCAGCGCCGGAACTT +
Preference number: 4 (lower is better)
Translates to: LRQADEISPPGNCTLSLTAGGGQ*RAAPEL
Trigger: AAGTTCCGGCGCTGCCCGCCACTGCCCACCACCAGC...GGTCAGGGACAGCGTGCAGTTGCCTGGAGGGCTGATCTCATCTGCTTGCCTGAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR TCA 90 bp CTCAGGCAAGCAGATGAGATCAGCCCTCCAGGCAACTGCACGCTGTCCCTGACCGTGGAGACCAGAGTCTaGGGCGGTTCTGGAGCCCGG +
Preference number: 4 (lower is better)
Translates to: LRQADEISPPGNCTLSLTVETRV*GGSGAR
Trigger: CCGGGCTCCAGAACCGCCTCAGACTCTGGTCTCCAC...GGTCAGGGACAGCGTGCAGTTGCCTGGAGGGCTGATCTCATCTGCTTGCCTGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR GCA 90 bp CCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGGATCTGGGTGAGCACCTCTGCCTaGGCCACGCTGGCCCCCAGC +
Preference number: 4 (lower is better)
Translates to: PWWPQGFKIQLSGLQRIWVSTSA*ATLAPS
Trigger: GCTGGGGGCCAGCGTGGCGCAGGCAGAGGTGCTCAC...CCAGATCCTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp AAATCCAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCGAACGTGAGCACCTCTaGCTGCGCCACGCTGGCCCC +
Preference number: 4 (lower is better)
Translates to: KSNSQASRGSGGEGLPRREREHL*LRHAGP
Trigger: GGGGCCAGCGTGGCGCAGGCAGAGGTGCTCACGTTC...GCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTGGATTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp GCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGACCCTACCGAGTCTGAGGCGGTTCTaGAGCCCGGATCTGCAGCTT +
Preference number: 4 (lower is better)
Translates to: ASRGSGGEGLPRRLVTLPSLRRF*SPDLQL
Trigger: AAGCTGCAGATCCGGGCTCCAGAACCGCCTCAGACT...CGGTAGGGTCACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp CCCAGACGCCTGGTGACCCTACCGCCTGGAGGGCTTGTTGGGCCTGCACTGGAGGCTCAAAGTAGGCCTTaGAGATGGAGAAGAGGCCGC +
Preference number: 4 (lower is better)
Translates to: PRRLVTLPPGGLVGPALEAQSRP*RWRRGR
Trigger: GCGGCCTCTTCTCCATCTCCAAGGCCTACTTTGAGC...CTCCAGTGCAGGCCCAACAAGCCCTCCAGGCGGTAGGGTCACCAGGCGTCTGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp GCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGACCCTACCGCCCTTGGGGAAGGTGTaGGGACTCTTGGTACGGAAC +
Preference number: 4 (lower is better)
Translates to: ASRGSGGEGLPRRLVTLPPLGKV*GLLVRN
Trigger: GTTCCGTACCAAGAGTCCCCACACCTTCCCCAAGGG...CGGTAGGGTCACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp CCCAGACGCCTGGTGACCCTACCGCCTGGAGGGCTTGTTGGGCCTGCACTGGAGACAGGGGGCCATGGCTaGCTTTTTGTCCTGGGATGT +
Preference number: 4 (lower is better)
Translates to: PRRLVTLPPGGLVGPALETGGHG*LFVLGC
Trigger: ACATCCCAGGACAAAAAGCCAGCCATGGCCCCCTGT...CTCCAGTGCAGGCCCAACAAGCCCTCCAGGCGGTAGGGTCACCAGGCGTCTGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp GCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGACCCTACCGCGTTGTGGAACACAATaGTCACGCTGGTGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: ASRGSGGEGLPRRLVTLPRCGTQ*SRWWWA
Trigger: TGCCCACCACCAGCGTGATCATTGTGTTCCACAACG...CGGTAGGGTCACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp CTTCCCTCTCCCACCTTGGATCACAACTCGGTCAGACTCTTTCCCTTGGCTGGGGGGCGTCCAGGAACGTaGGCACCTCTGCCTGCGCCA +
Preference number: 4 (lower is better)
Translates to: LPSPTLDHNSVRLFPLAGGRPGT*APLPAP
Trigger: TGGCGCAGGCAGAGGTGCTCACGTTCCTGGACGCCC...CCCAGCCAAGGGAAAGAGTCTGACCGAGTTGTGATCCAAGGTGGGAGAGGGAAG
62% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR TCA 90 bp CATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGGGGCGTCCAGGAACGTaGGCACCTCTGCCTGCGCCA +
Preference number: 4 (lower is better)
Translates to: HPALVATGLQNPTLRPPEGRPGT*APLPAP
Trigger: TGGCGCAGGCAGAGGTGCTCACGTTCCTGGACGCCC...CTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp CAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTTCAGCCAGGCGCACCTaGTTGCGCGCAATGACACTG +
Preference number: 4 (lower is better)
Translates to: QLSGLQRIWGRRTPQTPGSARRT*LRAMTL
Trigger: CAGTGTCATTGCGCGCAATCAGGTGCGCCTGGCTGA...ACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp CCAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGGGACGCTGTATACTGTaGGCAGCAGAGTGGACCAGG +
Preference number: 4 (lower is better)
Translates to: PTLRPPEDLGEKDSPDAWGRCIL*AAEWTR
Trigger: CCTGGTCCACTCTGCTGCGCACAGTATACAGCGTCC...CCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp CTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGACAGTAGGCCTTGGAGATaGAGAAGAGGCCGCCGGCAA +
Preference number: 4 (lower is better)
Translates to: LSGLQRIWGRRTPQTPGDSRPWR*RRGRRQ
Trigger: TTGCCGGCGGCCTCTTCTCCATCTCCAAGGCCTACT...GTCACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR CAA 72 bp ACCCAGGGGACAAGGGAGGCTTCCTGCAATGTGCCCTaGCATGGAGCAGGAGGCAGCCATGGTCCCATGCTG +
Preference number: 4 (lower is better)
Translates to: TQGTREASCNVP*HGAGGSHGPML
Trigger: CAGCATGGGACCATGGCTGCCTCCTGCTCCATGCAAGGGCACATTGCAGGAAGCCTCCCTTGTCCCCTGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR TCA 90 bp CCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGGATCTGGGTGGAGACCAGAGTCTaGGGCGGTTCTGGAGCCCGG +
Preference number: 4 (lower is better)
Translates to: PWWPQGFKIQLSGLQRIWVETRV*GGSGAR
Trigger: CCGGGCTCCAGAACCGCCTCAGACTCTGGTCTCCAC...CCAGATCCTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp GGCTGGGCTACCTCTGATTGTCACCCAGGGGACAAGGGAGGCTTCCTGCAATGTGGCTCCAGCCAGCCGTaGAAACACTCACAGTGGGCG +
Preference number: 4 (lower is better)
Translates to: GWATSDCHPGDKGGFLQCGSSQP*KHSQWA
Trigger: CGCCCACTGTGAGTGTTTTCACGGCTGGCTGGAGCC...ACATTGCAGGAAGCCTCCCTTGTCCCCTGGGTGACAATCAGAGGTAGCCCAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR TCA 90 bp AAATCCAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCGGCTCCAGCCAGCCGTaGAAACACTCACAGTGGGCG +
Preference number: 4 (lower is better)
Translates to: KSNSQASRGSGGEGLPRRGSSQP*KHSQWA
Trigger: CGCCCACTGTGAGTGTTTTCACGGCTGGCTGGAGCC...GCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTGGATTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp CCAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGATGGCAGGGCTGGTGTaGAGGACGCTGTATACTGTG +
Preference number: 4 (lower is better)
Translates to: PTLRPPEDLGEKDSPDAWMAGLV*RTLYTV
Trigger: CACAGTATACAGCGTCCTGCACACCAGCCCTGCCAT...CCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp AGAACATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCGAACGTGAGCACCTCTaGCTGCGCCACGCTGGCCCC +
Preference number: 4 (lower is better)
Translates to: RTSCLGGHRASKSNSQASEREHL*LRHAGP
Trigger: GGGGCCAGCGTGGCGCAGGCAGAGGTGCTCACGTTC...GGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGTTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp CCCAGACGCCTGGTGACCCTACCGCCTGGAGGGCTTGTTGGGCCTGCACTGGAGGCACTCTGCTGTTTTTaGCAACGAACTGACAGCTCC +
Preference number: 4 (lower is better)
Translates to: PRRLVTLPPGGLVGPALEALCCF*QRTDSS
Trigger: GGAGCTGTCAGTTCGTTGGCAAAAACAGCAGAGTGC...CTCCAGTGCAGGCCCAACAAGCCCTCCAGGCGGTAGGGTCACCAGGCGTCTGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp CATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGAGGAGGCCGGGTGTCTaGCCCCAGGGACCTCTGCAA +
Preference number: 4 (lower is better)
Translates to: HPALVATGLQNPTLRPPERRPGV*PQGPLQ
Trigger: TTGCAGAGGTCCCTGGGGCCAGACACCCGGCCTCCT...CTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp ACATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGCTGGTGGTGGGCAGTaGCGGGCAGCGCCGGAACTT +
Preference number: 4 (lower is better)
Translates to: TSCLGGHRASKSNSQASRAGGGQ*RAAPEL
Trigger: AAGTTCCGGCGCTGCCCGCCACTGCCCACCACCAGC...TCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp CAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTAGTAGGCCTTGGAGATaGAGAAGAGGCCGCCGGCAA +
Preference number: 4 (lower is better)
Translates to: QLSGLQRIWGRRTPQTPGSRPWR*RRGRRQ
Trigger: TTGCCGGCGGCCTCTTCTCCATCTCCAAGGCCTACT...ACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp CCAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGGCTCCATAGAAGGTaGGGTTCAGGTCGGGGACAA +
Preference number: 4 (lower is better)
Translates to: PTLRPPEDLGEKDSPDAWWLHRR*GSGRGQ
Trigger: TTGTCCCCGACCTGAACCCCACCTTCTATGGAGCCA...CCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp CCAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGACAGGGGGCCATGGCTaGCTTTTTGTCCTGGGATGT +
Preference number: 4 (lower is better)
Translates to: PTLRPPEDLGEKDSPDAWTGGHG*LFVLGC
Trigger: ACATCCCAGGACAAAAAGCCAGCCATGGCCCCCTGT...CCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp CCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGGGCTCCAGCCAGCCGTaGAAACACTCACAGTGGGCG +
Preference number: 4 (lower is better)
Translates to: PQGFKIQLSGLQRIWGRRGSSQP*KHSQWA
Trigger: CGCCCACTGTGAGTGTTTTCACGGCTGGCTGGAGCC...CCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp CCCTTCCAGTTCCTCTGCAGGACACACTCTCAGGCTGCTTTCGAGGCTCGTCTCCCTGATTGCGCGCAATaGCACTGGTGCCCTTGGGGA +
Preference number: 4 (lower is better)
Translates to: PFQFLCRTHSQAAFEARLPDCAQ*HWCPWG
Trigger: TCCCCAAGGGCACCAGTGTCATTGCGCGCAATCAGG...GAGACGAGCCTCGAAAGCAGCCTGAGAGTGTGTCCTGCAGAGGAACTGGAAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp CCCAGACGCCTGGTGACCCTACCGCCTGGAGGGCTTGTTGGGCCTGCACTGGAGGAGTTTCTGATGAGTTaGTCCTGGGTCAATTCCCAC +
Preference number: 4 (lower is better)
Translates to: PRRLVTLPPGGLVGPALEEFLMS*SWVNSH
Trigger: GTGGGAATTGACCCAGGATCAACTCATCAGAAACTC...CTCCAGTGCAGGCCCAACAAGCCCTCCAGGCGGTAGGGTCACCAGGCGTCTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp CTTCCCTCTCCCACCTTGGATCACAACTCGGTCAGACTCTTTCCCTTGGCTGGGGGCCCCAGGGACCTCTaGAAGGAGATGCGGTCACTG +
Preference number: 4 (lower is better)
Translates to: LPSPTLDHNSVRLFPLAGGPRDL*KEMRSL
Trigger: CAGTGACCGCATCTCCTTGCAGAGGTCCCTGGGGCC...CCCAGCCAAGGGAAAGAGTCTGACCGAGTTGTGATCCAAGGTGGGAGAGGGAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR GCA 90 bp CATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGGGCCCCAGGGACCTCTaGAAGGAGATGCGGTCACTG +
Preference number: 4 (lower is better)
Translates to: HPALVATGLQNPTLRPPEGPRDL*KEMRSL
Trigger: CAGTGACCGCATCTCCTTGCAGAGGTCCCTGGGGCC...CTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp CAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTAGCCTCTCCTTCAGGTaGTCATCTGTGCTGGCGTCA +
Preference number: 4 (lower is better)
Translates to: QLSGLQRIWGRRTPQTPGSLSFR*SSVLAS
Trigger: TGACGCCAGCACAGATGAGCACCTGAAGGAGAGGCT...ACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp CATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGGGCTCCAGTCGAAGTTaGCCCGGCTGTGGGCTTTGC +
Preference number: 4 (lower is better)
Translates to: HPALVATGLQNPTLRPPEGSSRS*PGCGLC
Trigger: GCAAAGCCCACAGCCGGGGCAACTTCGACTGGAGCC...CTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp GCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGACCCTACCGGCACTCTGCTGTTTTTaGCAACGAACTGACAGCTCC +
Preference number: 4 (lower is better)
Translates to: ASRGSGGEGLPRRLVTLPALCCF*QRTDSS
Trigger: GGAGCTGTCAGTTCGTTGGCAAAAACAGCAGAGTGC...CGGTAGGGTCACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp TGCCCTTCCAGTTCCTCTGCAGGACACACTCTCAGGCTGCTTTCGAGGCTCGTCAGGACCTGGTCCTTCTaGCCAGCCAGGGACTTCAGC +
Preference number: 4 (lower is better)
Translates to: CPSSSSAGHTLRLLSRLVRTWSF*PARDFS
Trigger: GCTGAAGTCCCTGGCTGGCCAGAAGGACCAGGTCCT...GACGAGCCTCGAAAGCAGCCTGAGAGTGTGTCCTGCAGAGGAACTGGAAGGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp AACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGGCAAGATGGCAGGGCTaGTGTGCAGGACGCTGTATA +
Preference number: 4 (lower is better)
Translates to: NSQASRGSGGEGLPRRLVARWQG*CAGRCI
Trigger: TATACAGCGTCCTGCACACCAGCCCTGCCATCTTGC...CACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp CTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGACCCGAAGTTGTTCTCCTaGACCATCTTTGCTGCCTGC +
Preference number: 4 (lower is better)
Translates to: LSGLQRIWGRRTPQTPGDPKLFS*TIFAAC
Trigger: GCAGGCAGCAAAGATGGTCCAGGAGAACAACTTCGG...GTCACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp AACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGGATTACAGGGGGCCATaGCTGGCTTTTTGTCCTGGG +
Preference number: 4 (lower is better)
Translates to: NSQASRGSGGEGLPRRLVDYRGP*LAFCPG
Trigger: CCCAGGACAAAAAGCCAGCCATGGCCCCCTGTAATC...CACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp CCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGCCTGATTGCGCGCAATaGCACTGGTGCCCTTGGGGA +
Preference number: 4 (lower is better)
Translates to: PQGFKIQLSGLQRIWGRRPDCAQ*HWCPWG
Trigger: TCCCCAAGGGCACCAGTGTCATTGCGCGCAATCAGG...CCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp CTTCCCTCTCCCACCTTGGATCACAACTCGGTCAGACTCTTTCCCTTGGCTGGGTCAGCCAGGCGCACCTaGTTGCGCGCAATGACACTG +
Preference number: 4 (lower is better)
Translates to: LPSPTLDHNSVRLFPLAGSARRT*LRAMTL
Trigger: CAGTGTCATTGCGCGCAATCAGGTGCGCCTGGCTGA...CCCAGCCAAGGGAAAGAGTCTGACCGAGTTGTGATCCAAGGTGGGAGAGGGAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR TCA 90 bp CTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGACTGGTGCCAAGATTCTTaGTGGCTCCATAGAAGGTGG +
Preference number: 4 (lower is better)
Translates to: LSGLQRIWGRRTPQTPGDWCQDS*WLHRRW
Trigger: CCACCTTCTATGGAGCCATCAAGAATCTTGGCACCA...GTCACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp CACCCAGGGGACAAGGGAGGCTTCCTGCAATGTGCCCTTGCATGGAGCAGGAGGGGTTTCTCCATGGCCTaGTCCTGGTTGCTTACATCC +
Preference number: 4 (lower is better)
Translates to: HPGDKGGFLQCALAWSRRGFSMA*SWLLTS
Trigger: GGATGTAAGCAACCAGGAGCAGGCCATGGAGAAACC...CCTCCTGCTCCATGCAAGGGCACATTGCAGGAAGCCTCCCTTGTCCCCTGGGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR GCA 90 bp TGCCCTTCCAGTTCCTCTGCAGGACACACTCTCAGGCTGCTTTCGAGGCTCGTCGGACGCTGTATACTGTaGGCAGCAGAGTGGACCAGG +
Preference number: 4 (lower is better)
Translates to: CPSSSSAGHTLRLLSRLVGRCIL*AAEWTR
Trigger: CCTGGTCCACTCTGCTGCGCACAGTATACAGCGTCC...GACGAGCCTCGAAAGCAGCCTGAGAGTGTGTCCTGCAGAGGAACTGGAAGGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp AACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGGGTAGGTCTCATCCTTaGGTCTCTGCTTCTCGTGCT +
Preference number: 4 (lower is better)
Translates to: NSQASRGSGGEGLPRRLVGRSHP*VSASRA
Trigger: AGCACGAGAAGCAGAGACGCAAGGATGAGACCTACC...CACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp CATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGAGCTGGCCCCCACACTaGCACACCCGGAAGGACATT +
Preference number: 4 (lower is better)
Translates to: HPALVATGLQNPTLRPPESWPPH*HTRKDI
Trigger: AATGTCCTTCCGGGTGTGGCAGTGTGGGGGCCAGCT...CTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp AGAACATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGACGCTGCCCAGCATaGCGAGGCGCAGGGACATGT +
Preference number: 4 (lower is better)
Translates to: RTSCLGGHRASKSNSQASRRCPA*RGAGTC
Trigger: ACATGTCCCTGCGCCTCGCCATGCTGGGCAGCGTCT...GGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGTTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp TGCCCTTCCAGTTCCTCTGCAGGACACACTCTCAGGCTGCTTTCGAGGCTCGTCAGTCTGAGGCGGTTCTaGAGCCCGGATCTGCAGCTT +
Preference number: 4 (lower is better)
Translates to: CPSSSSAGHTLRLLSRLVSLRRF*SPDLQL
Trigger: AAGCTGCAGATCCGGGCTCCAGAACCGCCTCAGACT...GACGAGCCTCGAAAGCAGCCTGAGAGTGTGTCCTGCAGAGGAACTGGAAGGGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp CCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGGATCTGGCCGGGCAGGCAGGAGTaGTTTGTGGAGACCAGAGTC +
Preference number: 4 (lower is better)
Translates to: PWWPQGFKIQLSGLQRIWPGRQE*FVETRV
Trigger: GACTCTGGTCTCCACAAACCACTCCTGCCTGCCCGG...CCAGATCCTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp TCCCTTGGCTGGGCTACCTCTGATTGTCACCCAGGGGACAAGGGAGGCTTCCTGGTTGGGATCTTGAGGTaGCCGGTCCCAGAAGGGTTT +
Preference number: 4 (lower is better)
Translates to: SLGWATSDCHPGDKGGFLVGILR*PVPEGF
Trigger: AAACCCTTCTGGGACCGGCCACCTCAAGATCCCAAC...CAGGAAGCCTCCCTTGTCCCCTGGGTGACAATCAGAGGTAGCCCAGCCAAGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CCA 90 bp CTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGACTTGCCGCCGAGGTTGTaGCAGACATACATGATGAGA +
Preference number: 4 (lower is better)
Translates to: LSGLQRIWGRRTPQTPGDLPPRL*QTYMMR
Trigger: TCTCATCATGTATGTCTGCCACAACCTCGGCGGCAA...GTCACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp TCCCTTGGCTGGGCTACCTCTGATTGTCACCCAGGGGACAAGGGAGGCTTCCTGACAGGGGGCCATGGCTaGCTTTTTGTCCTGGGATGT +
Preference number: 4 (lower is better)
Translates to: SLGWATSDCHPGDKGGFLTGGHG*LFVLGC
Trigger: ACATCCCAGGACAAAAAGCCAGCCATGGCCCCCTGT...CAGGAAGCCTCCCTTGTCCCCTGGGTGACAATCAGAGGTAGCCCAGCCAAGGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CCA 90 bp GCTGCTTTAGTCTCTGAGCACCGAGGCTGCAGACCTGTGCCTTCATGCCTAGCTGCTGGTAGGGATCCCTaGGATTACAGGGGGCCATGG +
Preference number: 4 (lower is better)
Translates to: AALVSEHRGCRPVPSCLAAGRDP*DYRGPW
Trigger: CCATGGCCCCCTGTAATCCCAGGGATCCCTACCAGC...AGCTAGGCATGAAGGCACAGGTCTGCAGCCTCGGTGCTCAGAGACTAAAGCAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR TCA 90 bp AAATCCAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCTCACAGCACCTAGCATaGAGTCCAGGACCTGGTCCT +
Preference number: 4 (lower is better)
Translates to: KSNSQASRGSGGEGLPRRSQHLA*SPGPGP
Trigger: AGGACCAGGTCCTGGACTTCATGCTAGGTGCTGTGA...GCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTGGATTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp AACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGTGGTGCCAAGATTCTTaGTGGCTCCATAGAAGGTGG +
Preference number: 4 (lower is better)
Translates to: NSQASRGSGGEGLPRRLVWCQDS*WLHRRW
Trigger: CCACCTTCTATGGAGCCATCAAGAATCTTGGCACCA...CACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp CTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGACGCAGGTACCAGATCCTaGGTTTCTGATGAGTTGATC +
Preference number: 4 (lower is better)
Translates to: LSGLQRIWGRRTPQTPGDAGTRS*VSDELI
Trigger: GATCAACTCATCAGAAACTCAGGATCTGGTACCTGC...GTCACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp GCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGACCCTACCGTTGCTTACATCCTTCTaGCGAATGAAGAGGAAGAGC +
Preference number: 4 (lower is better)
Translates to: ASRGSGGEGLPRRLVTLPLLTSF*RMKRKS
Trigger: GCTCTTCCTCTTCATTCGGCAGAAGGATGTAAGCAA...CGGTAGGGTCACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp CCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGGGACGCTGTATACTGTaGGCAGCAGAGTGGACCAGG +
Preference number: 4 (lower is better)
Translates to: PQGFKIQLSGLQRIWGRRGRCIL*AAEWTR
Trigger: CCTGGTCCACTCTGCTGCGCACAGTATACAGCGTCC...CCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp CAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGCATGTAGACACAGCTaGTTTCCAATGTTGTGGCGG +
Preference number: 4 (lower is better)
Translates to: QLSGLQRIWGRRTPQTPGACRHS*FPMLWR
Trigger: CCGCCACAACATTGGAAAGCAGCTGTGTCTACATGC...ACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp ACATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAAGGACCTGGTCCTTCTaGCCAGCCAGGGACTTCAGC +
Preference number: 4 (lower is better)
Translates to: TSCLGGHRASKSNSQASRRTWSF*PARDFS
Trigger: GCTGAAGTCCCTGGCTGGCCAGAAGGACCAGGTCCT...TCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp GCTGCTTTAGTCTCTGAGCACCGAGGCTGCAGACCTGTGCCTTCATGCCTAGCTATGAAGTCCAGGACCTaGTCCTTCTGGCCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: AALVSEHRGCRPVPSCLAMKSRT*SFWPAR
Trigger: CCTGGCTGGCCAGAAGGACCAGGTCCTGGACTTCAT...AGCTAGGCATGAAGGCACAGGTCTGCAGCCTCGGTGCTCAGAGACTAAAGCAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CCA 90 bp CATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGATGAAGTCCAGGACCTaGTCCTTCTGGCCAGCCAGG +
Preference number: 4 (lower is better)
Translates to: HPALVATGLQNPTLRPPEMKSRT*SFWPAR
Trigger: CCTGGCTGGCCAGAAGGACCAGGTCCTGGACTTCAT...CTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp CATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGCAGCGCCGGAACTTCTaGTCAACACACTCAGGAGGC +
Preference number: 4 (lower is better)
Translates to: HPALVATGLQNPTLRPPEQRRNF*STHSGG
Trigger: GCCTCCTGAGTGTGTTGACCAGAAGTTCCGGCGCTG...CTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp CACCGAGGCTGCAGACCTGTGCCTTCATGCCTAGCTCCTGCTTCAGCCTATTACCAGCGCCGGAACTTCTaGTCAACACACTCAGGAGGC +
Preference number: 4 (lower is better)
Translates to: HRGCRPVPSCLAPASAYYQRRNF*STHSGG
Trigger: GCCTCCTGAGTGTGTTGACCAGAAGTTCCGGCGCTG...GTAATAGGCTGAAGCAGGAGCTAGGCATGAAGGCACAGGTCTGCAGCCTCGGTG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CCA 90 bp GGCTGGGCTACCTCTGATTGTCACCCAGGGGACAAGGGAGGCTTCCTGCAATGTGATGGTGACGATGTCTaGGCTCACCACCGCTGTCTT +
Preference number: 4 (lower is better)
Translates to: GWATSDCHPGDKGGFLQCDGDDV*AHHRCL
Trigger: AAGACAGCGGTGGTGAGCCCAGACATCGTCACCATC...ACATTGCAGGAAGCCTCCCTTGTCCCCTGGGTGACAATCAGAGGTAGCCCAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CCA 90 bp TTGCATGGAGCAGGAGGCAGCCATGGTCCCATGCTGAAGTCCCCTAAAGCCTTCAGTAGGCCTTGGAGATaGAGAAGAGGCCGCCGGCAA +
Preference number: 4 (lower is better)
Translates to: LHGAGGSHGPMLKSPKAFSRPWR*RRGRRQ
Trigger: TTGCCGGCGGCCTCTTCTCCATCTCCAAGGCCTACT...GAAGGCTTTAGGGGACTTCAGCATGGGACCATGGCTGCCTCCTGCTCCATGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CCA 90 bp CAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTTGCTTTCCAATGTTGTaGCGGAGGTCCCTCTGTGAT +
Preference number: 4 (lower is better)
Translates to: QLSGLQRIWGRRTPQTPGCFPML*RRSLCD
Trigger: ATCACAGAGGGACCTCCGCCACAACATTGGAAAGCA...ACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp CTTCCCTCTCCCACCTTGGATCACAACTCGGTCAGACTCTTTCCCTTGGCTGGGCGTTGTGGAACACAATaGTCACGCTGGTGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: LPSPTLDHNSVRLFPLAGRCGTQ*SRWWWA
Trigger: TGCCCACCACCAGCGTGATCATTGTGTTCCACAACG...CCCAGCCAAGGGAAAGAGTCTGACCGAGTTGTGATCCAAGGTGGGAGAGGGAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR TCA 90 bp AAAGAAAATGGGACCAGTGTTGTTGCAAGAAGAACATCCTGCCTTGGTGGCCACGGGCGTCCAGGAACGTaGGCACCTCTGCCTGCGCCA +
Preference number: 4 (lower is better)
Translates to: KENGTSVVARRTSCLGGHGRPGT*APLPAP
Trigger: TGGCGCAGGCAGAGGTGCTCACGTTCCTGGACGCCC...GTGGCCACCAAGGCAGGATGTTCTTCTTGCAACAACACTGGTCCCATTTTCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp CCAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTTGCTTACATCCTTCTaGCGAATGAAGAGGAAGAGC +
Preference number: 4 (lower is better)
Translates to: PTLRPPEDLGEKDSPDAWLLTSF*RMKRKS
Trigger: GCTCTTCCTCTTCATTCGGCAGAAGGATGTAAGCAA...CCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp TCCCTTGGCTGGGCTACCTCTGATTGTCACCCAGGGGACAAGGGAGGCTTCCTGAAATGCTTTTCCATCTaGCCCAGGGCTGTTGGGATC +
Preference number: 4 (lower is better)
Translates to: SLGWATSDCHPGDKGGFLKCFSI*PRAVGI
Trigger: GATCCCAACAGCCCTGGGGCAGATGGAAAAGCATTT...CAGGAAGCCTCCCTTGTCCCCTGGGTGACAATCAGAGGTAGCCCAGCCAAGGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR GCA 90 bp CCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGGATCTGGAGCCTCTCCTTCAGGTaGTCATCTGTGCTGGCGTCA +
Preference number: 4 (lower is better)
Translates to: PWWPQGFKIQLSGLQRIWSLSFR*SSVLAS
Trigger: TGACGCCAGCACAGATGAGCACCTGAAGGAGAGGCT...CCAGATCCTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp AAAGAAAATGGGACCAGTGTTGTTGCAAGAAGAACATCCTGCCTTGGTGGCCACGAACGTGAGCACCTCTaGCTGCGCCACGCTGGCCCC +
Preference number: 4 (lower is better)
Translates to: KENGTSVVARRTSCLGGHEREHL*LRHAGP
Trigger: GGGGCCAGCGTGGCGCAGGCAGAGGTGCTCACGTTC...GTGGCCACCAAGGCAGGATGTTCTTCTTGCAACAACACTGGTCCCATTTTCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp AGAACATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGTCTGAGGCGGTTCTaGAGCCCGGATCTGCAGCTT +
Preference number: 4 (lower is better)
Translates to: RTSCLGGHRASKSNSQASSLRRF*SPDLQL
Trigger: AAGCTGCAGATCCGGGCTCCAGAACCGCCTCAGACT...GGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp CTCCTTGTCTATAGCTTAGAACAAAGGGGACCTGGGCTTGAGGCTCACCAGCTGCCGGGCAGGCAGGAGTaGTTTGTGGAGACCAGAGTC +
Preference number: 4 (lower is better)
Translates to: LLVYSLEQRGPGLEAHQLPGRQE*FVETRV
Trigger: GACTCTGGTCTCCACAAACCACTCCTGCCTGCCCGG...CAGCTGGTGAGCCTCAAGCCCAGGTCCCCTTTGTTCTAAGCTATAGACAAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CCA 90 bp CATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGGTTGGGATCTTGAGGTaGCCGGTCCCAGAAGGGTTT +
Preference number: 4 (lower is better)
Translates to: HPALVATGLQNPTLRPPEVGILR*PVPEGF
Trigger: AAACCCTTCTGGGACCGGCCACCTCAAGATCCCAAC...CTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp AGAACATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCCAGCGCCGGAACTTCTaGTCAACACACTCAGGAGGC +
Preference number: 4 (lower is better)
Translates to: RTSCLGGHRASKSNSQASQRRNF*STHSGG
Trigger: GCCTCCTGAGTGTGTTGACCAGAAGTTCCGGCGCTG...GGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGTTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp CACCGAGGCTGCAGACCTGTGCCTTCATGCCTAGCTCCTGCTTCAGCCTATTACGCAAGATGGCAGGGCTaGTGTGCAGGACGCTGTATA +
Preference number: 4 (lower is better)
Translates to: HRGCRPVPSCLAPASAYYARWQG*CAGRCI
Trigger: TATACAGCGTCCTGCACACCAGCCCTGCCATCTTGC...GTAATAGGCTGAAGCAGGAGCTAGGCATGAAGGCACAGGTCTGCAGCCTCGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CCA 90 bp TTGCATGGAGCAGGAGGCAGCCATGGTCCCATGCTGAAGTCCCCTAAAGCCTTCGCTCAAAGTAGGCCTTaGAGATGGAGAAGAGGCCGC +
Preference number: 4 (lower is better)
Translates to: LHGAGGSHGPMLKSPKAFAQSRP*RWRRGR
Trigger: GCGGCCTCTTCTCCATCTCCAAGGCCTACTTTGAGC...GAAGGCTTTAGGGGACTTCAGCATGGGACCATGGCTGCCTCCTGCTCCATGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CCA 90 bp CATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGGCTCAAAGTAGGCCTTaGAGATGGAGAAGAGGCCGC +
Preference number: 4 (lower is better)
Translates to: HPALVATGLQNPTLRPPEAQSRP*RWRRGR
Trigger: GCGGCCTCTTCTCCATCTCCAAGGCCTACTTTGAGC...CTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp CACCGAGGCTGCAGACCTGTGCCTTCATGCCTAGCTCCTGCTTCAGCCTATTACTGGCTCCATAGAAGGTaGGGTTCAGGTCGGGGACAA +
Preference number: 4 (lower is better)
Translates to: HRGCRPVPSCLAPASAYYWLHRR*GSGRGQ
Trigger: TTGTCCCCGACCTGAACCCCACCTTCTATGGAGCCA...GTAATAGGCTGAAGCAGGAGCTAGGCATGAAGGCACAGGTCTGCAGCCTCGGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CCA 90 bp CACCGAGGCTGCAGACCTGTGCCTTCATGCCTAGCTCCTGCTTCAGCCTATTACGATTACAGGGGGCCATaGCTGGCTTTTTGTCCTGGG +
Preference number: 4 (lower is better)
Translates to: HRGCRPVPSCLAPASAYYDYRGP*LAFCPG
Trigger: CCCAGGACAAAAAGCCAGCCATGGCCCCCTGTAATC...GTAATAGGCTGAAGCAGGAGCTAGGCATGAAGGCACAGGTCTGCAGCCTCGGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
3UTR CAA 72 bp CCCACCTTGGATCACAACTCGGTCAGACTCTTTCCCTaGGCTGGGCTACCTCTGATTGTCACCCAGGGGACA +
Preference number: 4 (lower is better)
Translates to: PTLDHNSVRLFP*AGLPLIVTQGT
Trigger: TGTCCCCTGGGTGACAATCAGAGGTAGCCCAGCCAAGGGAAAGAGTCTGACCGAGTTGTGATCCAAGGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR TCA 90 bp ACATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGATCACAGCACCTAGCATaGAGTCCAGGACCTGGTCCT +
Preference number: 4 (lower is better)
Translates to: TSCLGGHRASKSNSQASRSQHLA*SPGPGP
Trigger: AGGACCAGGTCCTGGACTTCATGCTAGGTGCTGTGA...TCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp AGAACATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCCGTTGTGGAACACAATaGTCACGCTGGTGGTGGGCA +
Preference number: 4 (lower is better)
Translates to: RTSCLGGHRASKSNSQASRCGTQ*SRWWWA
Trigger: TGCCCACCACCAGCGTGATCATTGTGTTCCACAACG...GGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp CTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGACGCGGTCACTGGCAAATaGATTAAAGCAGTGTTTCTT +
Preference number: 4 (lower is better)
Translates to: LSGLQRIWGRRTPQTPGDAVTGK*IKAVFL
Trigger: AAGAAACACTGCTTTAATGCATTTGCCAGTGACCGC...GTCACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp CCAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGGCGGTCACTGGCAAATaGATTAAAGCAGTGTTTCTT +
Preference number: 4 (lower is better)
Translates to: PTLRPPEDLGEKDSPDAWAVTGK*IKAVFL
Trigger: AAGAAACACTGCTTTAATGCATTTGCCAGTGACCGC...CCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp ACATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAATGGCAGGGCTGGTGTaGAGGACGCTGTATACTGTG +
Preference number: 4 (lower is better)
Translates to: TSCLGGHRASKSNSQASRMAGLV*RTLYTV
Trigger: CACAGTATACAGCGTCCTGCACACCAGCCCTGCCAT...TCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp CATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGGGTAGGTCTCATCCTTaGGTCTCTGCTTCTCGTGCT +
Preference number: 4 (lower is better)
Translates to: HPALVATGLQNPTLRPPEGRSHP*VSASRA
Trigger: AGCACGAGAAGCAGAGACGCAAGGATGAGACCTACC...CTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp CCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGGATCTGGGGTAGGTCTCATCCTTaGGTCTCTGCTTCTCGTGCT +
Preference number: 4 (lower is better)
Translates to: PWWPQGFKIQLSGLQRIWGRSHP*VSASRA
Trigger: AGCACGAGAAGCAGAGACGCAAGGATGAGACCTACC...CCAGATCCTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp TGCCCTTCCAGTTCCTCTGCAGGACACACTCTCAGGCTGCTTTCGAGGCTCGTCCTCCTGGACCATCTTTaGTGCCTGCAGATTTCTCCT +
Preference number: 4 (lower is better)
Translates to: CPSSSSAGHTLRLLSRLVLLDHL*CLQISP
Trigger: AGGAGAAATCTGCAGGCAGCAAAGATGGTCCAGGAG...GACGAGCCTCGAAAGCAGCCTGAGAGTGTGTCCTGCAGAGGAACTGGAAGGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp ACATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGATGGTGACGATGTCTaGGCTCACCACCGCTGTCTT +
Preference number: 4 (lower is better)
Translates to: TSCLGGHRASKSNSQASRDGDDV*AHHRCL
Trigger: AAGACAGCGGTGGTGAGCCCAGACATCGTCACCATC...TCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp TTGCATGGAGCAGGAGGCAGCCATGGTCCCATGCTGAAGTCCCCTAAAGCCTTCCCGAAGTTGTTCTCCTaGACCATCTTTGCTGCCTGC +
Preference number: 4 (lower is better)
Translates to: LHGAGGSHGPMLKSPKAFPKLFS*TIFAAC
Trigger: GCAGGCAGCAAAGATGGTCCAGGAGAACAACTTCGG...GAAGGCTTTAGGGGACTTCAGCATGGGACCATGGCTGCCTCCTGCTCCATGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CCA 90 bp AGAACATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCTGGCTCCATAGAAGGTaGGGTTCAGGTCGGGGACAA +
Preference number: 4 (lower is better)
Translates to: RTSCLGGHRASKSNSQASWLHRR*GSGRGQ
Trigger: TTGTCCCCGACCTGAACCCCACCTTCTATGGAGCCA...GGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp ACATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGCGGAGGTCCCTCTGTaGTGTGTACTCAAAGTACTG +
Preference number: 4 (lower is better)
Translates to: TSCLGGHRASKSNSQASRAEVPL*CVLKVL
Trigger: CAGTACTTTGAGTACACATCACAGAGGGACCTCCGC...TCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp CACCGAGGCTGCAGACCTGTGCCTTCATGCCTAGCTCCTGCTTCAGCCTATTACAAATGCTTTTCCATCTaGCCCAGGGCTGTTGGGATC +
Preference number: 4 (lower is better)
Translates to: HRGCRPVPSCLAPASAYYKCFSI*PRAVGI
Trigger: GATCCCAACAGCCCTGGGGCAGATGGAAAAGCATTT...GTAATAGGCTGAAGCAGGAGCTAGGCATGAAGGCACAGGTCTGCAGCCTCGGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR GCA 90 bp AGAACATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCCGTCTCTGCTTCTCGTaGTCAGGAAGCATTTCCCAG +
Preference number: 4 (lower is better)
Translates to: RTSCLGGHRASKSNSQASRLCFS*SGSISQ
Trigger: CTGGGAAATGCTTCCTGAGCACGAGAAGCAGAGACG...GGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGTTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp CACCGAGGCTGCAGACCTGTGCCTTCATGCCTAGCTCCTGCTTCAGCCTATTACGCATGTAGACACAGCTaGTTTCCAATGTTGTGGCGG +
Preference number: 4 (lower is better)
Translates to: HRGCRPVPSCLAPASAYYACRHS*FPMLWR
Trigger: CCGCCACAACATTGGAAAGCAGCTGTGTCTACATGC...GTAATAGGCTGAAGCAGGAGCTAGGCATGAAGGCACAGGTCTGCAGCCTCGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CCA 90 bp GGTGCTAAGGGGTCAAACTCAGAGCCTTTCCCTGAACTATATACTCCACCTCACCCGGGCAGGCAGGAGTaGTTTGTGGAGACCAGAGTC +
Preference number: 4 (lower is better)
Translates to: GAKGSNSEPFPELYTPPHPGRQE*FVETRV
Trigger: GACTCTGGTCTCCACAAACCACTCCTGCCTGCCCGG...GTGAGGTGGAGTATATAGTTCAGGGAAAGGCTCTGAGTTTGACCCCTTAGCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp AAAGAAAATGGGACCAGTGTTGTTGCAAGAAGAACATCCTGCCTTGGTGGCCACCTGCCCCAGGGCTGTTaGGATCTTGAGGTGGCCGGT +
Preference number: 4 (lower is better)
Translates to: KENGTSVVARRTSCLGGHLPQGC*DLEVAG
Trigger: ACCGGCCACCTCAAGATCCCAACAGCCCTGGGGCAG...GTGGCCACCAAGGCAGGATGTTCTTCTTGCAACAACACTGGTCCCATTTTCTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp ACCAATACCATAAAACCTTTATTTCCACCAGGTTCCCAATCAGCCTCTCTTCCCGCTGGTGGTGGGCAGTaGCGGGCAGCGCCGGAACTT +
Preference number: 4 (lower is better)
Translates to: TNTIKPLFPPGSQSASLPAGGGQ*RAAPEL
Trigger: AAGTTCCGGCGCTGCCCGCCACTGCCCACCACCAGC...GGGAAGAGAGGCTGATTGGGAACCTGGTGGAAATAAAGGTTTTATGGTATTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159715.8
CDS-3UTR CCA 90 bp CTCCTTGTCTATAGCTTAGAACAAAGGGGACCTGGGCTTGAGGCTCACCAGCTGGCAAGATGGCAGGGCTaGTGTGCAGGACGCTGTATA +
Preference number: 4 (lower is better)
Translates to: LLVYSLEQRGPGLEAHQLARWQG*CAGRCI
Trigger: TATACAGCGTCCTGCACACCAGCCCTGCCATCTTGC...CAGCTGGTGAGCCTCAAGCCCAGGTCCCCTTTGTTCTAAGCTATAGACAAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CCA 90 bp TGCCCTTCCAGTTCCTCTGCAGGACACACTCTCAGGCTGCTTTCGAGGCTCGTCGGGGACAAACATCTCTaGGTAGACATTGTGCAGGTA +
Preference number: 4 (lower is better)
Translates to: CPSSSSAGHTLRLLSRLVGDKHL*VDIVQV
Trigger: TACCTGCACAATGTCTACCCAGAGATGTTTGTCCCC...GACGAGCCTCGAAAGCAGCCTGAGAGTGTGTCCTGCAGAGGAACTGGAAGGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp CCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGGATCTGGTTGCCGCCGAGGTTGTaGCAGACATACATGATGAGA +
Preference number: 4 (lower is better)
Translates to: PWWPQGFKIQLSGLQRIWLPPRL*QTYMMR
Trigger: TCTCATCATGTATGTCTGCCACAACCTCGGCGGCAA...CCAGATCCTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp CTCCTTGTCTATAGCTTAGAACAAAGGGGACCTGGGCTTGAGGCTCACCAGCTGGATTACAGGGGGCCATaGCTGGCTTTTTGTCCTGGG +
Preference number: 4 (lower is better)
Translates to: LLVYSLEQRGPGLEAHQLDYRGP*LAFCPG
Trigger: CCCAGGACAAAAAGCCAGCCATGGCCCCCTGTAATC...CAGCTGGTGAGCCTCAAGCCCAGGTCCCCTTTGTTCTAAGCTATAGACAAGGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CCA 90 bp GGTGCTAAGGGGTCAAACTCAGAGCCTTTCCCTGAACTATATACTCCACCTCACGCTGGTAGGGATCCCTaGGATTACAGGGGGCCATGG +
Preference number: 4 (lower is better)
Translates to: GAKGSNSEPFPELYTPPHAGRDP*DYRGPW
Trigger: CCATGGCCCCCTGTAATCCCAGGGATCCCTACCAGC...GTGAGGTGGAGTATATAGTTCAGGGAAAGGCTCTGAGTTTGACCCCTTAGCACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp GGTGCTAAGGGGTCAAACTCAGAGCCTTTCCCTGAACTATATACTCCACCTCACACGATCTGCAGCTGCTaGACGTACTGCTCCAGCCTC +
Preference number: 4 (lower is better)
Translates to: GAKGSNSEPFPELYTPPHTICSC*TYCSSL
Trigger: GAGGCTGGAGCAGTACGTTCAGCAGCTGCAGATCGT...GTGAGGTGGAGTATATAGTTCAGGGAAAGGCTCTGAGTTTGACCCCTTAGCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp CACCGAGGCTGCAGACCTGTGCCTTCATGCCTAGCTCCTGCTTCAGCCTATTACGCAGGTACCAGATCCTaGGTTTCTGATGAGTTGATC +
Preference number: 4 (lower is better)
Translates to: HRGCRPVPSCLAPASAYYAGTRS*VSDELI
Trigger: GATCAACTCATCAGAAACTCAGGATCTGGTACCTGC...GTAATAGGCTGAAGCAGGAGCTAGGCATGAAGGCACAGGTCTGCAGCCTCGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR GCA 90 bp CTCCTTGTCTATAGCTTAGAACAAAGGGGACCTGGGCTTGAGGCTCACCAGCTGGGTTTCTCCATGGCCTaGTCCTGGTTGCTTACATCC +
Preference number: 4 (lower is better)
Translates to: LLVYSLEQRGPGLEAHQLGFSMA*SWLLTS
Trigger: GGATGTAAGCAACCAGGAGCAGGCCATGGAGAAACC...CAGCTGGTGAGCCTCAAGCCCAGGTCCCCTTTGTTCTAAGCTATAGACAAGGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR GCA 90 bp TATTTTCTTCCAGGCAGAGTGACAGTGGGGTCCAAGTTGATTGTAGAAAGGCTGGGCTCCAGTCGAAGTTaGCCCGGCTGTGGGCTTTGC +
Preference number: 4 (lower is better)
Translates to: YFLPGRVTVGSKLIVERLGSSRS*PGCGLC
Trigger: GCAAAGCCCACAGCCGGGGCAACTTCGACTGGAGCC...CAGCCTTTCTACAATCAACTTGGACCCCACTGTCACTCTGCCTGGAAGAAAATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CCA 90 bp AAATCCAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCTTTGCCTCTCTGTACTaGTCTGGAGAATTGGAAGGT +
Preference number: 4 (lower is better)
Translates to: KSNSQASRGSGGEGLPRRFASLY*SGELEG
Trigger: ACCTTCCAATTCTCCAGACCAGTACAGAGAGGCAAA...GCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTGGATTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp GGCTGGGCTACCTCTGATTGTCACCCAGGGGACAAGGGAGGCTTCCTGCAATGTTTTGCCTCTCTGTACTaGTCTGGAGAATTGGAAGGT +
Preference number: 4 (lower is better)
Translates to: GWATSDCHPGDKGGFLQCFASLY*SGELEG
Trigger: ACCTTCCAATTCTCCAGACCAGTACAGAGAGGCAAA...ACATTGCAGGAAGCCTCCCTTGTCCCCTGGGTGACAATCAGAGGTAGCCCAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CCA 90 bp AAAGAAAATGGGACCAGTGTTGTTGCAAGAAGAACATCCTGCCTTGGTGGCCACGCTGGTAGGGATCCCTaGGATTACAGGGGGCCATGG +
Preference number: 4 (lower is better)
Translates to: KENGTSVVARRTSCLGGHAGRDP*DYRGPW
Trigger: CCATGGCCCCCTGTAATCCCAGGGATCCCTACCAGC...GTGGCCACCAAGGCAGGATGTTCTTCTTGCAACAACACTGGTCCCATTTTCTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp AAAGAAAATGGGACCAGTGTTGTTGCAAGAAGAACATCCTGCCTTGGTGGCCACACGATCTGCAGCTGCTaGACGTACTGCTCCAGCCTC +
Preference number: 4 (lower is better)
Translates to: KENGTSVVARRTSCLGGHTICSC*TYCSSL
Trigger: GAGGCTGGAGCAGTACGTTCAGCAGCTGCAGATCGT...GTGGCCACCAAGGCAGGATGTTCTTCTTGCAACAACACTGGTCCCATTTTCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp GGCCAAGTAGCATGTGACCTCCTGGTCTCTCCACTGATATGGAAGAAAGAAAATTCAGCCAGGCGCACCTaGTTGCGCGCAATGACACTG +
Preference number: 4 (lower is better)
Translates to: GQVACDLLVSPLIWKKENSARRT*LRAMTL
Trigger: CAGTGTCATTGCGCGCAATCAGGTGCGCCTGGCTGA...ATTTTCTTTCTTCCATATCAGTGGAGAGACCAGGAGGTCACATGCTACTTGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp CCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGTTGCTTACATCCTTCTaGCGAATGAAGAGGAAGAGC +
Preference number: 4 (lower is better)
Translates to: PQGFKIQLSGLQRIWGRRLLTSF*RMKRKS
Trigger: GCTCTTCCTCTTCATTCGGCAGAAGGATGTAAGCAA...CCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp CCCTTCCAGTTCCTCTGCAGGACACACTCTCAGGCTGCTTTCGAGGCTCGTCTCGCGGTCACTGGCAAATaGATTAAAGCAGTGTTTCTT +
Preference number: 4 (lower is better)
Translates to: PFQFLCRTHSQAAFEARLAVTGK*IKAVFL
Trigger: AAGAAACACTGCTTTAATGCATTTGCCAGTGACCGC...GAGACGAGCCTCGAAAGCAGCCTGAGAGTGTGTCCTGCAGAGGAACTGGAAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp TATTTTCTTCCAGGCAGAGTGACAGTGGGGTCCAAGTTGATTGTAGAAAGGCTGAGCTGGCCCCCACACTaGCACACCCGGAAGGACATT +
Preference number: 4 (lower is better)
Translates to: YFLPGRVTVGSKLIVERLSWPPH*HTRKDI
Trigger: AATGTCCTTCCGGGTGTGGCAGTGTGGGGGCCAGCT...CAGCCTTTCTACAATCAACTTGGACCCCACTGTCACTCTGCCTGGAAGAAAATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CCA 90 bp CAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTCTTCTTCCTTTTCTTTaGTCTCTAGATTGGTCCATT +
Preference number: 4 (lower is better)
Translates to: QLSGLQRIWGRRTPQTPGLLPFL*SLDWSI
Trigger: AATGGACCAATCTAGAGACCAAAGAAAAGGAAGAAG...ACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp TATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACAAGAGAGGCTCTCTGAGGAGGCCGGGTGTCTaGCCCCAGGGACCTCTGCAA +
Preference number: 4 (lower is better)
Translates to: YTHQEGLLQRSANKRGSLRRPGV*PQGPLQ
Trigger: TTGCAGAGGTCCCTGGGGCCAGACACCCGGCCTCCT...CAGAGAGCCTCTCTTGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp GGCACTCTGTGTATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACAAGAAGGAGGCCGGGTGTCTaGCCCCAGGGACCTCTGCAA +
Preference number: 4 (lower is better)
Translates to: GTLCIHIKRVCFKDLLTRRRPGV*PQGPLQ
Trigger: TTGCAGAGGTCCCTGGGGCCAGACACCCGGCCTCCT...TCTTGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATACACAGAGTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp AAAGAAAATGGGACCAGTGTTGTTGCAAGAAGAACATCCTGCCTTGGTGGCCACCCCTTGGGGAAGGTGTaGGGACTCTTGGTACGGAAC +
Preference number: 4 (lower is better)
Translates to: KENGTSVVARRTSCLGGHPLGKV*GLLVRN
Trigger: GTTCCGTACCAAGAGTCCCCACACCTTCCCCAAGGG...GTGGCCACCAAGGCAGGATGTTCTTCTTGCAACAACACTGGTCCCATTTTCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp TGCCTTAGTTCAGGGGCTGCAAGGCAGTCCCCTGCATATTCTCCATGCTGTTTTCCGAAGTTGTTCTCCTaGACCATCTTTGCTGCCTGC +
Preference number: 4 (lower is better)
Translates to: CLSSGAARQSPAYSPCCFPKLFS*TIFAAC
Trigger: GCAGGCAGCAAAGATGGTCCAGGAGAACAACTTCGG...AAAACAGCATGGAGAATATGCAGGGGACTGCCTTGCAGCCCCTGAACTAAGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR TCA 90 bp AAAGAAAATGGGACCAGTGTTGTTGCAAGAAGAACATCCTGCCTTGGTGGCCACTCACAGCACCTAGCATaGAGTCCAGGACCTGGTCCT +
Preference number: 4 (lower is better)
Translates to: KENGTSVVARRTSCLGGHSQHLA*SPGPGP
Trigger: AGGACCAGGTCCTGGACTTCATGCTAGGTGCTGTGA...GTGGCCACCAAGGCAGGATGTTCTTCTTGCAACAACACTGGTCCCATTTTCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp GGCCAAGTAGCATGTGACCTCCTGGTCTCTCCACTGATATGGAAGAAAGAAAATACGATCTGCAGCTGCTaGACGTACTGCTCCAGCCTC +
Preference number: 4 (lower is better)
Translates to: GQVACDLLVSPLIWKKENTICSC*TYCSSL
Trigger: GAGGCTGGAGCAGTACGTTCAGCAGCTGCAGATCGT...ATTTTCTTTCTTCCATATCAGTGGAGAGACCAGGAGGTCACATGCTACTTGGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp ACCAATACCATAAAACCTTTATTTCCACCAGGTTCCCAATCAGCCTCTCTTCCCCCTGATTGCGCGCAATaGCACTGGTGCCCTTGGGGA +
Preference number: 4 (lower is better)
Translates to: TNTIKPLFPPGSQSASLPPDCAQ*HWCPWG
Trigger: TCCCCAAGGGCACCAGTGTCATTGCGCGCAATCAGG...GGGAAGAGAGGCTGATTGGGAACCTGGTGGAAATAAAGGTTTTATGGTATTGGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000159715.8
CDS-3UTR TCA 90 bp CTCCTTGTCTATAGCTTAGAACAAAGGGGACCTGGGCTTGAGGCTCACCAGCTGGAGTTTCTGATGAGTTaGTCCTGGGTCAATTCCCAC +
Preference number: 4 (lower is better)
Translates to: LLVYSLEQRGPGLEAHQLEFLMS*SWVNSH
Trigger: GTGGGAATTGACCCAGGATCAACTCATCAGAAACTC...CAGCTGGTGAGCCTCAAGCCCAGGTCCCCTTTGTTCTAAGCTATAGACAAGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR GCA 90 bp GGCACTCTGTGTATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACAAGAGGCTCCAGTCGAAGTTaGCCCGGCTGTGGGCTTTGC +
Preference number: 4 (lower is better)
Translates to: GTLCIHIKRVCFKDLLTRGSSRS*PGCGLC
Trigger: GCAAAGCCCACAGCCGGGGCAACTTCGACTGGAGCC...TCTTGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATACACAGAGTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp AGGGGGTCAGGAAATGGCATGGCTGGCAGCTCGCTGTTTAGTGTTTTTATGTGCCTCCTGGACCATCTTTaGTGCCTGCAGATTTCTCCT +
Preference number: 4 (lower is better)
Translates to: RGSGNGMAGSSLFSVFMCLLDHL*CLQISP
Trigger: AGGAGAAATCTGCAGGCAGCAAAGATGGTCCAGGAG...GCACATAAAAACACTAAACAGCGAGCTGCCAGCCATGCCATTTCCTGACCCCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR GCA 90 bp TGCCTTAGTTCAGGGGCTGCAAGGCAGTCCCCTGCATATTCTCCATGCTGTTTTGCATGTAGACACAGCTaGTTTCCAATGTTGTGGCGG +
Preference number: 4 (lower is better)
Translates to: CLSSGAARQSPAYSPCCFACRHS*FPMLWR
Trigger: CCGCCACAACATTGGAAAGCAGCTGTGTCTACATGC...AAAACAGCATGGAGAATATGCAGGGGACTGCCTTGCAGCCCCTGAACTAAGGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CCA 90 bp GGCACTCTGTGTATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACAAGAAGACGCTGCCCAGCATaGCGAGGCGCAGGGACATGT +
Preference number: 4 (lower is better)
Translates to: GTLCIHIKRVCFKDLLTRRRCPA*RGAGTC
Trigger: ACATGTCCCTGCGCCTCGCCATGCTGGGCAGCGTCT...TCTTGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATACACAGAGTGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp GAAGGCACTCTGTGTATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACAAGACGCTGCCCAGCATaGCGAGGCGCAGGGACATGT +
Preference number: 4 (lower is better)
Translates to: EGTLCIHIKRVCFKDLLTRRCPA*RGAGTC
Trigger: ACATGTCCCTGCGCCTCGCCATGCTGGGCAGCGTCT...TGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATACACAGAGTGCCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp AAAGAAAATGGGACCAGTGTTGTTGCAAGAAGAACATCCTGCCTTGGTGGCCACGTTGGGATCTTGAGGTaGCCGGTCCCAGAAGGGTTT +
Preference number: 4 (lower is better)
Translates to: KENGTSVVARRTSCLGGHVGILR*PVPEGF
Trigger: AAACCCTTCTGGGACCGGCCACCTCAAGATCCCAAC...GTGGCCACCAAGGCAGGATGTTCTTCTTGCAACAACACTGGTCCCATTTTCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp GAAGGCACTCTGTGTATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACACTGCCCCAGGGCTGTTaGGATCTTGAGGTGGCCGGT +
Preference number: 4 (lower is better)
Translates to: EGTLCIHIKRVCFKDLLTLPQGC*DLEVAG
Trigger: ACCGGCCACCTCAAGATCCCAACAGCCCTGGGGCAG...TGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATACACAGAGTGCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp ACATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGATTTGCCTCTCTGTACTaGTCTGGAGAATTGGAAGGT +
Preference number: 4 (lower is better)
Translates to: TSCLGGHRASKSNSQASRFASLY*SGELEG
Trigger: ACCTTCCAATTCTCCAGACCAGTACAGAGAGGCAAA...TCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR CAA 72 bp TATTTTCTTCCAGGCAGAGTGACAGTGGGGTCCAAGTaGATTGTAGAAAGGCTGGCATCCTCGGGTCAGCTC +
Preference number: 4 (lower is better)
Translates to: YFLPGRVTVGSK*IVERLASSGQL
Trigger: GAGCTGACCCGAGGATGCCAGCCTTTCTACAATCAACTTGGACCCCACTGTCACTCTGCCTGGAAGAAAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR TCA 90 bp TGCCTTAGTTCAGGGGCTGCAAGGCAGTCCCCTGCATATTCTCCATGCTGTTTTGAGTTTCTGATGAGTTaGTCCTGGGTCAATTCCCAC +
Preference number: 4 (lower is better)
Translates to: CLSSGAARQSPAYSPCCFEFLMS*SWVNSH
Trigger: GTGGGAATTGACCCAGGATCAACTCATCAGAAACTC...AAAACAGCATGGAGAATATGCAGGGGACTGCCTTGCAGCCCCTGAACTAAGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR GCA 90 bp TATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACAAGAGAGGCTCTCTGAGCTGGCCCCCACACTaGCACACCCGGAAGGACATT +
Preference number: 4 (lower is better)
Translates to: YTHQEGLLQRSANKRGSLSWPPH*HTRKDI
Trigger: AATGTCCTTCCGGGTGTGGCAGTGTGGGGGCCAGCT...CAGAGAGCCTCTCTTGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp GGTGCTAAGGGGTCAAACTCAGAGCCTTTCCCTGAACTATATACTCCACCTCACCTCCTGGACCATCTTTaGTGCCTGCAGATTTCTCCT +
Preference number: 4 (lower is better)
Translates to: GAKGSNSEPFPELYTPPHLLDHL*CLQISP
Trigger: AGGAGAAATCTGCAGGCAGCAAAGATGGTCCAGGAG...GTGAGGTGGAGTATATAGTTCAGGGAAAGGCTCTGAGTTTGACCCCTTAGCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp TATTTTCTTCCAGGCAGAGTGACAGTGGGGTCCAAGTTGATTGTAGAAAGGCTGGATGGTGACGATGTCTaGGCTCACCACCGCTGTCTT +
Preference number: 4 (lower is better)
Translates to: YFLPGRVTVGSKLIVERLDGDDV*AHHRCL
Trigger: AAGACAGCGGTGGTGAGCCCAGACATCGTCACCATC...CAGCCTTTCTACAATCAACTTGGACCCCACTGTCACTCTGCCTGGAAGAAAATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CCA 90 bp GGTGCTAAGGGGTCAAACTCAGAGCCTTTCCCTGAACTATATACTCCACCTCACTGCTTTCCAATGTTGTaGCGGAGGTCCCTCTGTGAT +
Preference number: 4 (lower is better)
Translates to: GAKGSNSEPFPELYTPPHCFPML*RRSLCD
Trigger: ATCACAGAGGGACCTCCGCCACAACATTGGAAAGCA...GTGAGGTGGAGTATATAGTTCAGGGAAAGGCTCTGAGTTTGACCCCTTAGCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp AAAGAAAATGGGACCAGTGTTGTTGCAAGAAGAACATCCTGCCTTGGTGGCCACTGGTGCCAAGATTCTTaGTGGCTCCATAGAAGGTGG +
Preference number: 4 (lower is better)
Translates to: KENGTSVVARRTSCLGGHWCQDS*WLHRRW
Trigger: CCACCTTCTATGGAGCCATCAAGAATCTTGGCACCA...GTGGCCACCAAGGCAGGATGTTCTTCTTGCAACAACACTGGTCCCATTTTCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp AAAGAAAATGGGACCAGTGTTGTTGCAAGAAGAACATCCTGCCTTGGTGGCCACAAATGCTTTTCCATCTaGCCCAGGGCTGTTGGGATC +
Preference number: 4 (lower is better)
Translates to: KENGTSVVARRTSCLGGHKCFSI*PRAVGI
Trigger: GATCCCAACAGCCCTGGGGCAGATGGAAAAGCATTT...GTGGCCACCAAGGCAGGATGTTCTTCTTGCAACAACACTGGTCCCATTTTCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp TATTTTCTTCCAGGCAGAGTGACAGTGGGGTCCAAGTTGATTGTAGAAAGGCTGCGTCTCTGCTTCTCGTaGTCAGGAAGCATTTCCCAG +
Preference number: 4 (lower is better)
Translates to: YFLPGRVTVGSKLIVERLRLCFS*SGSISQ
Trigger: CTGGGAAATGCTTCCTGAGCACGAGAAGCAGAGACG...CAGCCTTTCTACAATCAACTTGGACCCCACTGTCACTCTGCCTGGAAGAAAATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR GCA 90 bp AAAGAAAATGGGACCAGTGTTGTTGCAAGAAGAACATCCTGCCTTGGTGGCCACGCACTCTGCTGTTTTTaGCAACGAACTGACAGCTCC +
Preference number: 4 (lower is better)
Translates to: KENGTSVVARRTSCLGGHALCCF*QRTDSS
Trigger: GGAGCTGTCAGTTCGTTGGCAAAAACAGCAGAGTGC...GTGGCCACCAAGGCAGGATGTTCTTCTTGCAACAACACTGGTCCCATTTTCTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp CACCGAGGCTGCAGACCTGTGCCTTCATGCCTAGCTCCTGCTTCAGCCTATTACCTTTGGTCTCTAGATTaGTCCATTCTTTCTTCTGAA +
Preference number: 4 (lower is better)
Translates to: HRGCRPVPSCLAPASAYYLWSLD*SILSSE
Trigger: TTCAGAAGAAAGAATGGACCAATCTAGAGACCAAAG...GTAATAGGCTGAAGCAGGAGCTAGGCATGAAGGCACAGGTCTGCAGCCTCGGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CCA 90 bp CCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGGATCTGGCTTTGGTCTCTAGATTaGTCCATTCTTTCTTCTGAA +
Preference number: 4 (lower is better)
Translates to: PWWPQGFKIQLSGLQRIWLWSLD*SILSSE
Trigger: TTCAGAAGAAAGAATGGACCAATCTAGAGACCAAAG...CCAGATCCTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp GGCACTCTGTGTATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACAAGACCCTTGGGGAAGGTGTaGGGACTCTTGGTACGGAAC +
Preference number: 4 (lower is better)
Translates to: GTLCIHIKRVCFKDLLTRPLGKV*GLLVRN
Trigger: GTTCCGTACCAAGAGTCCCCACACCTTCCCCAAGGG...TCTTGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATACACAGAGTGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
3UTR CAA 72 bp CCCCTCAGACTTGCCACGACTCTGATTAGCCTTATCTaGGGTCTAAGCTTGGAACTGCTAAACATCTTGCCA +
Preference number: 4 (lower is better)
Translates to: PLRLATTLISLI*GLSLELLNILP
Trigger: TGGCAAGATGTTTAGCAGTTCCAAGCTTAGACCCAAGATAAGGCTAATCAGAGTCGTGGCAAGTCTGAGGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR GCA 90 bp GAAGGCACTCTGTGTATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACAAGCCTCTCCTTCAGGTaGTCATCTGTGCTGGCGTCA +
Preference number: 4 (lower is better)
Translates to: EGTLCIHIKRVCFKDLLTSLSFR*SSVLAS
Trigger: TGACGCCAGCACAGATGAGCACCTGAAGGAGAGGCT...TGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATACACAGAGTGCCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp AGAACATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCCTTCTTCCTTTTCTTTaGTCTCTAGATTGGTCCATT +
Preference number: 4 (lower is better)
Translates to: RTSCLGGHRASKSNSQASLLPFL*SLDWSI
Trigger: AATGGACCAATCTAGAGACCAAAGAAAAGGAAGAAG...GGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp GGCACTCTGTGTATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACAAGAGCGGAGGTCCCTCTGTaGTGTGTACTCAAAGTACTG +
Preference number: 4 (lower is better)
Translates to: GTLCIHIKRVCFKDLLTRAEVPL*CVLKVL
Trigger: CAGTACTTTGAGTACACATCACAGAGGGACCTCCGC...TCTTGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATACACAGAGTGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp GAAGGCACTCTGTGTATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACAGCGGAGGTCCCTCTGTaGTGTGTACTCAAAGTACTG +
Preference number: 4 (lower is better)
Translates to: EGTLCIHIKRVCFKDLLTAEVPL*CVLKVL
Trigger: CAGTACTTTGAGTACACATCACAGAGGGACCTCCGC...TGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATACACAGAGTGCCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR GCA 90 bp GAAGGCACTCTGTGTATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACACGTCTCTGCTTCTCGTaGTCAGGAAGCATTTCCCAG +
Preference number: 4 (lower is better)
Translates to: EGTLCIHIKRVCFKDLLTRLCFS*SGSISQ
Trigger: CTGGGAAATGCTTCCTGAGCACGAGAAGCAGAGACG...TGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATACACAGAGTGCCTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp GAAGGCACTCTGTGTATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACATTGCCGCCGAGGTTGTaGCAGACATACATGATGAGA +
Preference number: 4 (lower is better)
Translates to: EGTLCIHIKRVCFKDLLTLPPRL*QTYMMR
Trigger: TCTCATCATGTATGTCTGCCACAACCTCGGCGGCAA...TGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATACACAGAGTGCCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR TCA 90 bp GGCACTCTGTGTATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACAAGAGCAGGTACCAGATCCTaGGTTTCTGATGAGTTGATC +
Preference number: 4 (lower is better)
Translates to: GTLCIHIKRVCFKDLLTRAGTRS*VSDELI
Trigger: GATCAACTCATCAGAAACTCAGGATCTGGTACCTGC...TCTTGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATACACAGAGTGCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp TATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACAAGAGAGGCTCTCTGGGGGACAAACATCTCTaGGTAGACATTGTGCAGGTA +
Preference number: 4 (lower is better)
Translates to: YTHQEGLLQRSANKRGSLGDKHL*VDIVQV
Trigger: TACCTGCACAATGTCTACCCAGAGATGTTTGTCCCC...CAGAGAGCCTCTCTTGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp GAAGGCACTCTGTGTATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACAGGGGACAAACATCTCTaGGTAGACATTGTGCAGGTA +
Preference number: 4 (lower is better)
Translates to: EGTLCIHIKRVCFKDLLTGDKHL*VDIVQV
Trigger: TACCTGCACAATGTCTACCCAGAGATGTTTGTCCCC...TGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATACACAGAGTGCCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CCA 90 bp TATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACAAGAGAGGCTCTCTGCTTCTTCCTTTTCTTTaGTCTCTAGATTGGTCCATT +
Preference number: 4 (lower is better)
Translates to: YTHQEGLLQRSANKRGSLLLPFL*SLDWSI
Trigger: AATGGACCAATCTAGAGACCAAAGAAAAGGAAGAAG...CAGAGAGCCTCTCTTGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp CCCAGACGCCTGGTGACCCTACCGCCTGGAGGGCTTGTTGGGCCTGCACTGGAGGCCATGGCTGGCTTTTaGTCCTGGGATGTCAGGCAG +
Preference number: 5 (lower is better)
Translates to: PRRLVTLPPGGLVGPALEAMAGF*SWDVRQ
Trigger: CTGCCTGACATCCCAGGACAAAAAGCCAGCCATGGC...CTCCAGTGCAGGCCCAACAAGCCCTCCAGGCGGTAGGGTCACCAGGCGTCTGGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS TCA 90 bp CCCTTCCGCTCCCGCTGCCGAACCACGCGCACGATCTGCAGCTGCTaGACGTACTGCTCCAGCCTCTCCTTCAGGTGCTCATCTGTGCTG +
Preference number: 5 (lower is better)
Translates to: PFRSRCRTTRTICSC*TYCSSLSFRCSSVL
Trigger: CAGCACAGATGAGCACCTGAAGGAGAGGCTGGAGCAGTACGTTCAGCAGCTGCAGATCGTGCGCGTGGTTCGGCAGCGGGAGCGGAAGGG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp CAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTCCCCGGCTGTGGGCTTaGCCTCTCTGTACTGGTCTG +
Preference number: 5 (lower is better)
Translates to: QLSGLQRIWGRRTPQTPGPRLWA*PLCTGL
Trigger: CAGACCAGTACAGAGAGGCAAAGCCCACAGCCGGGG...ACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp GCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGACCCTACCGGCCATGGCTGGCTTTTaGTCCTGGGATGTCAGGCAG +
Preference number: 5 (lower is better)
Translates to: ASRGSGGEGLPRRLVTLPAMAGF*SWDVRQ
Trigger: CTGCCTGACATCCCAGGACAAAAAGCCAGCCATGGC...CGGTAGGGTCACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp CCAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGGCCATGGCTGGCTTTTaGTCCTGGGATGTCAGGCAG +
Preference number: 5 (lower is better)
Translates to: PTLRPPEDLGEKDSPDAWAMAGF*SWDVRQ
Trigger: CTGCCTGACATCCCAGGACAAAAAGCCAGCCATGGC...CCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp CAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGCAGGCAGGAGTGGTTaGTGGAGACCAGAGTCTGAG +
Preference number: 5 (lower is better)
Translates to: QLSGLQRIWGRRTPQTPGAGRSG*WRPESE
Trigger: CTCAGACTCTGGTCTCCACAAACCACTCCTGCCTGC...ACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp AAATCCAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCCCCGGCTGTGGGCTTaGCCTCTCTGTACTGGTCTG +
Preference number: 5 (lower is better)
Translates to: KSNSQASRGSGGEGLPRRPRLWA*PLCTGL
Trigger: CAGACCAGTACAGAGAGGCAAAGCCCACAGCCGGGG...GCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTGGATTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp TGCCCTTCCAGTTCCTCTGCAGGACACACTCTCAGGCTGCTTTCGAGGCTCGTCAGGCTCCAGTCGAAGTaGCCCCGGCTGTGGGCTTTG +
Preference number: 5 (lower is better)
Translates to: CPSSSSAGHTLRLLSRLVRLQSK*PRLWAL
Trigger: CAAAGCCCACAGCCGGGGCAACTTCGACTGGAGCCT...GACGAGCCTCGAAAGCAGCCTGAGAGTGTGTCCTGCAGAGGAACTGGAAGGGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp GCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGACCCTACCGTCTCCTGGACCATCTTaGCTGCCTGCAGATTTCTCC +
Preference number: 5 (lower is better)
Translates to: ASRGSGGEGLPRRLVTLPSPGPS*LPADFS
Trigger: GGAGAAATCTGCAGGCAGCAAAGATGGTCCAGGAGA...CGGTAGGGTCACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp CTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGACGTGGACCAGGCTTCGTaGTGGAACACAATGATCACG +
Preference number: 5 (lower is better)
Translates to: LSGLQRIWGRRTPQTPGDVDQAS*WNTMIT
Trigger: CGTGATCATTGTGTTCCACAACGAAGCCTGGTCCAC...GTCACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp TGCCCTTCCAGTTCCTCTGCAGGACACACTCTCAGGCTGCTTTCGAGGCTCGTCATGACACTGGTGCCCTaGGGGAAGGTGTGGGGACTC +
Preference number: 5 (lower is better)
Translates to: CPSSSSAGHTLRLLSRLVMTLVP*GKVWGL
Trigger: GAGTCCCCACACCTTCCCCAAGGGCACCAGTGTCAT...GACGAGCCTCGAAAGCAGCCTGAGAGTGTGTCCTGCAGAGGAACTGGAAGGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp ACATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAAGGCTCCAGTCGAAGTaGCCCCGGCTGTGGGCTTTG +
Preference number: 5 (lower is better)
Translates to: TSCLGGHRASKSNSQASRRLQSK*PRLWAL
Trigger: CAAAGCCCACAGCCGGGGCAACTTCGACTGGAGCCT...TCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp TTGCATGGAGCAGGAGGCAGCCATGGTCCCATGCTGAAGTCCCCTAAAGCCTTCAAGGTGTGGGGACTCTaGGTACGGAACACGTGGCCG +
Preference number: 5 (lower is better)
Translates to: LHGAGGSHGPMLKSPKAFKVWGL*VRNTWP
Trigger: CGGCCACGTGTTCCGTACCAAGAGTCCCCACACCTT...GAAGGCTTTAGGGGACTTCAGCATGGGACCATGGCTGCCTCCTGCTCCATGCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CAA 90 bp CCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGAAGGTGTGGGGACTCTaGGTACGGAACACGTGGCCG +
Preference number: 5 (lower is better)
Translates to: PQGFKIQLSGLQRIWGRRKVWGL*VRNTWP
Trigger: CGGCCACGTGTTCCGTACCAAGAGTCCCCACACCTT...CCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp CAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTTCTCCTGGACCATCTTaGCTGCCTGCAGATTTCTCC +
Preference number: 5 (lower is better)
Translates to: QLSGLQRIWGRRTPQTPGSPGPS*LPADFS
Trigger: GGAGAAATCTGCAGGCAGCAAAGATGGTCCAGGAGA...ACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS TCA 90 bp TCCCACTCCTCGTCCTTGGGCACTCTGCTGTTTTTGCCAACGAACTaGCAGCTCCTAAGGCCGAGCGTGCTCCCACTGGCATGTAGACAC +
Preference number: 5 (lower is better)
Translates to: SHSSSLGTLLFLPTN*QLLRPSVLPLACRH
Trigger: GTGTCTACATGCCAGTGGGAGCACGCTCGGCCTTAGGAGCTGTCAGTTCGTTGGCAAAAACAGCAGAGTGCCCAAGGACGAGGAGTGGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CCA 90 bp ATGTTGTTCACAGCACCTAGCATGAAGTCCAGGACCTGGTCCTTCTaGCCAGCCAGGGACTTCAGCCACGGTTTCTCCATGGCCTGCTCC +
Preference number: 5 (lower is better)
Translates to: MLFTAPSMKSRTWSF*PARDFSHGFSMACS
Trigger: GGAGCAGGCCATGGAGAAACCGTGGCTGAAGTCCCTGGCTGGCCAGAAGGACCAGGTCCTGGACTTCATGCTAGGTGCTGTGAACAACAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CCA 90 bp GGGCAGGCAGGAGTGGTTTGTGGAGACCAGAGTCTGAGGCGGTTCTaGAGCCCGGATCTGCAGCTTAGGCATGACGTCCCTAATGTTGTT +
Preference number: 5 (lower is better)
Translates to: GQAGVVCGDQSLRRF*SPDLQLRHDVPNVV
Trigger: AACAACATTAGGGACGTCATGCCTAAGCTGCAGATCCGGGCTCCAGAACCGCCTCAGACTCTGGTCTCCACAAACCACTCCTGCCTGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CCA 90 bp CAAACAGCCAGAGCTGGTAGGGATCCCTGGGATTACAGGGGGCCATaGCTGGCTTTTTGTCCTGGGATGTCAGGCAGGTACCAGATCCTG +
Preference number: 5 (lower is better)
Translates to: QTARAGRDPWDYRGP*LAFCPGMSGRYQIL
Trigger: CAGGATCTGGTACCTGCCTGACATCCCAGGACAAAAAGCCAGCCATGGCCCCCTGTAATCCCAGGGATCCCTACCAGCTCTGGCTGTTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp CCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGGCAGGCAGGAGTGGTTaGTGGAGACCAGAGTCTGAG +
Preference number: 5 (lower is better)
Translates to: PQGFKIQLSGLQRIWGRRAGRSG*WRPESE
Trigger: CTCAGACTCTGGTCTCCACAAACCACTCCTGCCTGC...CCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp TGCCCTTCCAGTTCCTCTGCAGGACACACTCTCAGGCTGCTTTCGAGGCTCGTCAGCTGCTTTCCAATGTaGTGGCGGAGGTCCCTCTGT +
Preference number: 5 (lower is better)
Translates to: CPSSSSAGHTLRLLSRLVSCFPM*WRRSLC
Trigger: ACAGAGGGACCTCCGCCACAACATTGGAAAGCAGCT...GACGAGCCTCGAAAGCAGCCTGAGAGTGTGTCCTGCAGAGGAACTGGAAGGGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS GCA 90 bp AGCCACGGTTTCTCCATGGCCTGCTCCTGGTTGCTTACATCCTTCTaGCGAATGAAGAGGAAGAGCATGAAGACGCTGCCCAGCATGGCG +
Preference number: 5 (lower is better)
Translates to: SHGFSMACSWLLTSF*RMKRKSMKTLPSMA
Trigger: CGCCATGCTGGGCAGCGTCTTCATGCTCTTCCTCTTCATTCGGCAGAAGGATGTAAGCAACCAGGAGCAGGCCATGGAGAAACCGTGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS GCA 90 bp TCCTTCTGGCCAGCCAGGGACTTCAGCCACGGTTTCTCCATGGCCTaGTCCTGGTTGCTTACATCCTTCTGCCGAATGAAGAGGAAGAGC +
Preference number: 5 (lower is better)
Translates to: SFWPARDFSHGFSMA*SWLLTSFCRMKRKS
Trigger: GCTCTTCCTCTTCATTCGGCAGAAGGATGTAAGCAACCAGGAGCAGGCCATGGAGAAACCGTGGCTGAAGTCCCTGGCTGGCCAGAAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS GCA 90 bp CAGCTCCTAAGGCCGAGCGTGCTCCCACTGGCATGTAGACACAGCTaGTTTCCAATGTTGTGGCGGAGGTCCCTCTGTGATGTGTACTCA +
Preference number: 5 (lower is better)
Translates to: QLLRPSVLPLACRHS*FPMLWRRSLCDVYS
Trigger: TGAGTACACATCACAGAGGGACCTCCGCCACAACATTGGAAAGCAGCTGTGTCTACATGCCAGTGGGAGCACGCTCGGCCTTAGGAGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp CAACTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTATGACGTCCCTAATGTaGTTCACAGCACCTAGCATG +
Preference number: 5 (lower is better)
Translates to: QLSGLQRIWGRRTPQTPGMTSLM*FTAPSM
Trigger: CATGCTAGGTGCTGTGAACAACATTAGGGACGTCAT...ACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAGTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp CTCCTTGTCTATAGCTTAGAACAAAGGGGACCTGGGCTTGAGGCTCACCAGCTGATGACACTGGTGCCCTaGGGGAAGGTGTGGGGACTC +
Preference number: 5 (lower is better)
Translates to: LLVYSLEQRGPGLEAHQLMTLVP*GKVWGL
Trigger: GAGTCCCCACACCTTCCCCAAGGGCACCAGTGTCAT...CAGCTGGTGAGCCTCAAGCCCAGGTCCCCTTTGTTCTAAGCTATAGACAAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CAA 90 bp CCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGGATCTGGAGCTGCTTTCCAATGTaGTGGCGGAGGTCCCTCTGT +
Preference number: 5 (lower is better)
Translates to: PWWPQGFKIQLSGLQRIWSCFPM*WRRSLC
Trigger: ACAGAGGGACCTCCGCCACAACATTGGAAAGCAGCT...CCAGATCCTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp CATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAGAGCTGCTTTCCAATGTaGTGGCGGAGGTCCCTCTGT +
Preference number: 5 (lower is better)
Translates to: HPALVATGLQNPTLRPPESCFPM*WRRSLC
Trigger: ACAGAGGGACCTCCGCCACAACATTGGAAAGCAGCT...CTCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS TCA 90 bp CATTGTGCAGGTACCAGGAGAAGTTGTGGCATCGTAGCTGCTCCCTaGGCCGAAGTCGCTCCGAGATGTCACCGAAGTTGTTCTCCTGGA +
Preference number: 5 (lower is better)
Translates to: HCAGTRRSCGIVAAP*AEVAPRCHRSCSPG
Trigger: TCCAGGAGAACAACTTCGGTGACATCTCGGAGCGACTTCGGCTCAGGGAGCAGCTACGATGCCACAACTTCTCCTGGTACCTGCACAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CCA 90 bp ACGTCCCTAATGTTGTTCACAGCACCTAGCATGAAGTCCAGGACCTaGTCCTTCTGGCCAGCCAGGGACTTCAGCCACGGTTTCTCCATG +
Preference number: 5 (lower is better)
Translates to: TSLMLFTAPSMKSRT*SFWPARDFSHGFSM
Trigger: CATGGAGAAACCGTGGCTGAAGTCCCTGGCTGGCCAGAAGGACCAGGTCCTGGACTTCATGCTAGGTGCTGTGAACAACATTAGGGACGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CCA 90 bp TTGCCCCGGCTGTGGGCTTTGCCTCTCTGTACTGGTCTGGAGAATTaGAAGGTATTAAGGTCGATGGTGACGATGTCTGGGCTCACCACC +
Preference number: 5 (lower is better)
Translates to: LPRLWALPLCTGLEN*KVLRSMVTMSGLTT
Trigger: GGTGGTGAGCCCAGACATCGTCACCATCGACCTTAATACCTTCCAATTCTCCAGACCAGTACAGAGAGGCAAAGCCCACAGCCGGGGCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp CTCTCAGGCCTCCAGAGGATCTGGGGGAGAAGGACTCCCCAGACGCCTGGTGACCCTTCTTCCTTTTCTTaGGTCTCTAGATTGGTCCAT +
Preference number: 5 (lower is better)
Translates to: LSGLQRIWGRRTPQTPGDPSSFS*VSRLVH
Trigger: ATGGACCAATCTAGAGACCAAAGAAAAGGAAGAAGG...GTCACCAGGCGTCTGGGGAGTCCTTCTCCCCCAGATCCTCTGGAGGCCTGAGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp CTTCCCTCTCCCACCTTGGATCACAACTCGGTCAGACTCTTTCCCTTGGCTGGGGTGGACCAGGCTTCGTaGTGGAACACAATGATCACG +
Preference number: 5 (lower is better)
Translates to: LPSPTLDHNSVRLFPLAGVDQAS*WNTMIT
Trigger: CGTGATCATTGTGTTCCACAACGAAGCCTGGTCCAC...CCCAGCCAAGGGAAAGAGTCTGACCGAGTTGTGATCCAAGGTGGGAGAGGGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CAA 90 bp CACCGAGGCTGCAGACCTGTGCCTTCATGCCTAGCTCCTGCTTCAGCCTATTACTCTCCTGGACCATCTTaGCTGCCTGCAGATTTCTCC +
Preference number: 5 (lower is better)
Translates to: HRGCRPVPSCLAPASAYYSPGPS*LPADFS
Trigger: GGAGAAATCTGCAGGCAGCAAAGATGGTCCAGGAGA...GTAATAGGCTGAAGCAGGAGCTAGGCATGAAGGCACAGGTCTGCAGCCTCGGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS CCA 90 bp GCTCCAGTCGAAGTTGCCCCGGCTGTGGGCTTTGCCTCTCTGTACTaGTCTGGAGAATTGGAAGGTATTAAGGTCGATGGTGACGATGTC +
Preference number: 5 (lower is better)
Translates to: APVEVAPAVGFASLY*SGELEGIKVDGDDV
Trigger: GACATCGTCACCATCGACCTTAATACCTTCCAATTCTCCAGACCAGTACAGAGAGGCAAAGCCCACAGCCGGGGCAACTTCGACTGGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CCA 90 bp ATTTCCCAGCCGAAGGTCAGGCTCCAGTCGAAGTTGCCCCGGCTGTaGGCTTTGCCTCTCTGTACTGGTCTGGAGAATTGGAAGGTATTA +
Preference number: 5 (lower is better)
Translates to: ISQPKVRLQSKLPRL*ALPLCTGLENWKVL
Trigger: TAATACCTTCCAATTCTCCAGACCAGTACAGAGAGGCAAAGCCCACAGCCGGGGCAACTTCGACTGGAGCCTGACCTTCGGCTGGGAAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp GGTGCTAAGGGGTCAAACTCAGAGCCTTTCCCTGAACTATATACTCCACCTCACATGACACTGGTGCCCTaGGGGAAGGTGTGGGGACTC +
Preference number: 5 (lower is better)
Translates to: GAKGSNSEPFPELYTPPHMTLVP*GKVWGL
Trigger: GAGTCCCCACACCTTCCCCAAGGGCACCAGTGTCAT...GTGAGGTGGAGTATATAGTTCAGGGAAAGGCTCTGAGTTTGACCCCTTAGCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS TCA 90 bp GGTTGTTCTCGCCCACGTCCAAACACTGATTGGTGCCAAGATTCTTaGTGGCTCCATAGAAGGTGGGGTTCAGGTCGGGGACAAACATCT +
Preference number: 5 (lower is better)
Translates to: GCSRPRPNTDWCQDS*WLHRRWGSGRGQTS
Trigger: AGATGTTTGTCCCCGACCTGAACCCCACCTTCTATGGAGCCATCAAGAATCTTGGCACCAATCAGTGTTTGGACGTGGGCGAGAACAACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS TCA 90 bp CATGGCTGGCTTTTTGTCCTGGGATGTCAGGCAGGTACCAGATCCTaGGTTTCTGATGAGTTGATCCTGGGTCAATTCCCACTCCTCGTC +
Preference number: 5 (lower is better)
Translates to: HGWLFVLGCQAGTRS*VSDELILGQFPLLV
Trigger: GACGAGGAGTGGGAATTGACCCAGGATCAACTCATCAGAAACTCAGGATCTGGTACCTGCCTGACATCCCAGGACAAAAAGCCAGCCATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CCA 90 bp TGGTCTGGAGAATTGGAAGGTATTAAGGTCGATGGTGACGATGTCTaGGCTCACCACCGCTGTCTTGTCTTCAGCAATTCGAGCCAGGAG +
Preference number: 5 (lower is better)
Translates to: WSGELEGIKVDGDDV*AHHRCLVFSNSSQE
Trigger: CTCCTGGCTCGAATTGCTGAAGACAAGACAGCGGTGGTGAGCCCAGACATCGTCACCATCGACCTTAATACCTTCCAATTCTCCAGACCA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp ACATCCTGCCTTGGTGGCCACAGGGCTTCAAAATCCAACTCTCAGGCCTCCAGAATGACGTCCCTAATGTaGTTCACAGCACCTAGCATG +
Preference number: 5 (lower is better)
Translates to: TSCLGGHRASKSNSQASRMTSLM*FTAPSM
Trigger: CATGCTAGGTGCTGTGAACAACATTAGGGACGTCAT...TCTGGAGGCCTGAGAGTTGGATTTTGAAGCCCTGTGGCCACCAAGGCAGGATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp AGGGGGTCAGGAAATGGCATGGCTGGCAGCTCGCTGTTTAGTGTTTTTATGTGCGTGGACCAGGCTTCGTaGTGGAACACAATGATCACG +
Preference number: 5 (lower is better)
Translates to: RGSGNGMAGSSLFSVFMCVDQAS*WNTMIT
Trigger: CGTGATCATTGTGTTCCACAACGAAGCCTGGTCCAC...GCACATAAAAACACTAAACAGCGAGCTGCCAGCCATGCCATTTCCTGACCCCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CAA 90 bp GGCACTCTGTGTATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACAAGACCCCGGCTGTGGGCTTaGCCTCTCTGTACTGGTCTG +
Preference number: 5 (lower is better)
Translates to: GTLCIHIKRVCFKDLLTRPRLWA*PLCTGL
Trigger: CAGACCAGTACAGAGAGGCAAAGCCCACAGCCGGGG...TCTTGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATACACAGAGTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp AATACCATAAAACCTTTATTTCCACCAGGTTCCCAATCAGCCTCTCTTCCCTCTAGGCTCCAGTCGAAGTaGCCCCGGCTGTGGGCTTTG +
Preference number: 5 (lower is better)
Translates to: NTIKPLFPPGSQSASLPSRLQSK*PRLWAL
Trigger: CAAAGCCCACAGCCGGGGCAACTTCGACTGGAGCCT...AGAGGGAAGAGAGGCTGATTGGGAACCTGGTGGAAATAAAGGTTTTATGGTATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
CDS-3UTR CAA 90 bp ACCAATACCATAAAACCTTTATTTCCACCAGGTTCCCAATCAGCCTCTCTTCCCAAGGTGTGGGGACTCTaGGTACGGAACACGTGGCCG +
Preference number: 5 (lower is better)
Translates to: TNTIKPLFPPGSQSASLPKVWGL*VRNTWP
Trigger: CGGCCACGTGTTCCGTACCAAGAGTCCCCACACCTT...GGGAAGAGAGGCTGATTGGGAACCTGGTGGAAATAAAGGTTTTATGGTATTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159715.8
CDS-3UTR CAA 90 bp GGCCAAGTAGCATGTGACCTCCTGGTCTCTCCACTGATATGGAAGAAAGAAAATATGACGTCCCTAATGTaGTTCACAGCACCTAGCATG +
Preference number: 5 (lower is better)
Translates to: GQVACDLLVSPLIWKKENMTSLM*FTAPSM
Trigger: CATGCTAGGTGCTGTGAACAACATTAGGGACGTCAT...ATTTTCTTTCTTCCATATCAGTGGAGAGACCAGGAGGTCACATGCTACTTGGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp GGTGCTAAGGGGTCAAACTCAGAGCCTTTCCCTGAACTATATACTCCACCTCACCCTTCTTCCTTTTCTTaGGTCTCTAGATTGGTCCAT +
Preference number: 5 (lower is better)
Translates to: GAKGSNSEPFPELYTPPHPSSFS*VSRLVH
Trigger: ATGGACCAATCTAGAGACCAAAGAAAAGGAAGAAGG...GTGAGGTGGAGTATATAGTTCAGGGAAAGGCTCTGAGTTTGACCCCTTAGCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS-3UTR CAA 90 bp GGCACTCTGTGTATACACATCAAGAGGGTTTGCTTCAAAGATCTGCTAACAAGACCTTCTTCCTTTTCTTaGGTCTCTAGATTGGTCCAT +
Preference number: 5 (lower is better)
Translates to: GTLCIHIKRVCFKDLLTRPSSFS*VSRLVH
Trigger: ATGGACCAATCTAGAGACCAAAGAAAAGGAAGAAGG...TCTTGTTAGCAGATCTTTGAAGCAAACCCTCTTGATGTGTATACACAGAGTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS TCA 72 bp AGCCGTGAAAACACTCACAGTGGGCGTCCAGGAACGTaGGCACCTCTGCCTGCGCCACGCTGGCCCCCAGCA +
Preference number: 6 (lower is better)
Translates to: SRENTHSGRPGT*APLPAPRWPPA
Trigger: TGCTGGGGGCCAGCGTGGCGCAGGCAGAGGTGCTCACGTTCCTGGACGCCCACTGTGAGTGTTTTCACGGCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS TCA 72 bp TCCCGCTGCCGAACCACGCGCACGATCTGCAGCTGCTaGACGTACTGCTCCAGCCTCTCCTTCAGGTGCTCA +
Preference number: 6 (lower is better)
Translates to: SRCRTTRTICSC*TYCSSLSFRCS
Trigger: TGAGCACCTGAAGGAGAGGCTGGAGCAGTACGTTCAGCAGCTGCAGATCGTGCGCGTGGTTCGGCAGCGGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS TCA 72 bp TCCAGACCTCAGCCAGGCGCACCTGATTGCGCGCAATaGCACTGGTGCCCTTGGGGAAGGTGTGGGGACTCT +
Preference number: 6 (lower is better)
Translates to: SRPQPGAPDCAQ*HWCPWGRCGDS
Trigger: AGAGTCCCCACACCTTCCCCAAGGGCACCAGTGTCATTGCGCGCAATCAGGTGCGCCTGGCTGAGGTCTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CCA 72 bp TTGCGCGCAATGACACTGGTGCCCTTGGGGAAGGTGTaGGGACTCTTGGTACGGAACACGTGGCCGACCACC +
Preference number: 6 (lower is better)
Translates to: LRAMTLVPLGKV*GLLVRNTWPTT
Trigger: GGTGGTCGGCCACGTGTTCCGTACCAAGAGTCCCCACACCTTCCCCAAGGGCACCAGTGTCATTGCGCGCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS GCA 72 bp CACTCAGGAGGCCGGGTGTCTGGCCCCAGGGACCTCTaGAAGGAGATGCGGTCACTGGCAAATGCATTAAAG +
Preference number: 6 (lower is better)
Translates to: HSGGRVSGPRDL*KEMRSLANALK
Trigger: CTTTAATGCATTTGCCAGTGACCGCATCTCCTTGCAGAGGTCCCTGGGGCCAGACACCCGGCCTCCTGAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CCA 72 bp CCGAAGGTCAGGCTCCAGTCGAAGTTGCCCCGGCTGTaGGCTTTGCCTCTCTGTACTGGTCTGGAGAATTGG +
Preference number: 6 (lower is better)
Translates to: PKVRLQSKLPRL*ALPLCTGLENW
Trigger: CCAATTCTCCAGACCAGTACAGAGAGGCAAAGCCCACAGCCGGGGCAACTTCGACTGGAGCCTGACCTTCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CAA 72 bp TCGATGGTGACGATGTCTGGGCTCACCACCGCTGTCTaGTCTTCAGCAATTCGAGCCAGGAGGGGCTCCAGC +
Preference number: 6 (lower is better)
Translates to: SMVTMSGLTTAV*SSAIRARRGSS
Trigger: GCTGGAGCCCCTCCTGGCTCGAATTGCTGAAGACAAGACAGCGGTGGTGAGCCCAGACATCGTCACCATCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS TCA 72 bp TCGTCCTTGGGCACTCTGCTGTTTTTGCCAACGAACTaGCAGCTCCTAAGGCCGAGCGTGCTCCCACTGGCA +
Preference number: 6 (lower is better)
Translates to: SSLGTLLFLPTN*QLLRPSVLPLA
Trigger: TGCCAGTGGGAGCACGCTCGGCCTTAGGAGCTGTCAGTTCGTTGGCAAAAACAGCAGAGTGCCCAAGGACGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS GCA 72 bp TTGTGCAGGTACCAGGAGAAGTTGTGGCATCGTAGCTaGTCCCTGAGCCGAAGTCGCTCCGAGATGTCACCG +
Preference number: 6 (lower is better)
Translates to: LCRYQEKLWHRS*SLSRSRSEMSP
Trigger: CGGTGACATCTCGGAGCGACTTCGGCTCAGGGAGCAGCTACGATGCCACAACTTCTCCTGGTACCTGCACAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS GCA 72 bp AGGCCGAGCGTGCTCCCACTGGCATGTAGACACAGCTaGTTTCCAATGTTGTGGCGGAGGTCCCTCTGTGAT +
Preference number: 6 (lower is better)
Translates to: RPSVLPLACRHS*FPMLWRRSLCD
Trigger: ATCACAGAGGGACCTCCGCCACAACATTGGAAAGCAGCTGTGTCTACATGCCAGTGGGAGCACGCTCGGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CCA 72 bp CTGGTAGGGATCCCTGGGATTACAGGGGGCCATGGCTaGCTTTTTGTCCTGGGATGTCAGGCAGGTACCAGA +
Preference number: 6 (lower is better)
Translates to: LVGIPGITGGHG*LFVLGCQAGTR
Trigger: TCTGGTACCTGCCTGACATCCCAGGACAAAAAGCCAGCCATGGCCCCCTGTAATCCCAGGGATCCCTACCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CAA 90 bp CAGCCGAAGGTCAGGCTCCAGTCGAAGTTGCCCCGGCTGTGGGCTTaGCCTCTCTGTACTGGTCTGGAGAATTGGAAGGTATTAAGGTCG +
Preference number: 6 (lower is better)
Translates to: QPKVRLQSKLPRLWA*PLCTGLENWKVLRS
Trigger: CGACCTTAATACCTTCCAATTCTCCAGACCAGTACAGAGAGGCAAAGCCCACAGCCGGGGCAACTTCGACTGGAGCCTGACCTTCGGCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CCA 72 bp ATGTTGTTCACAGCACCTAGCATGAAGTCCAGGACCTaGTCCTTCTGGCCAGCCAGGGACTTCAGCCACGGT +
Preference number: 6 (lower is better)
Translates to: MLFTAPSMKSRT*SFWPARDFSHG
Trigger: ACCGTGGCTGAAGTCCCTGGCTGGCCAGAAGGACCAGGTCCTGGACTTCATGCTAGGTGCTGTGAACAACAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CCA 72 bp GGTTATCATAGGTACCGATGTGCTCAAAGTAGGCCTTaGAGATGGAGAAGAGGCCGCCGGCAAACGTCGGGG +
Preference number: 6 (lower is better)
Translates to: GYHRYRCAQSRP*RWRRGRRQTSG
Trigger: CCCCGACGTTTGCCGGCGGCCTCTTCTCCATCTCCAAGGCCTACTTTGAGCACATCGGTACCTATGATAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CAA 90 bp GGTTCTGGAGCCCGGATCTGCAGCTTAGGCATGACGTCCCTAATGTaGTTCACAGCACCTAGCATGAAGTCCAGGACCTGGTCCTTCTGG +
Preference number: 6 (lower is better)
Translates to: GSGARICSLGMTSLM*FTAPSMKSRTWSFW
Trigger: CCAGAAGGACCAGGTCCTGGACTTCATGCTAGGTGCTGTGAACAACATTAGGGACGTCATGCCTAAGCTGCAGATCCGGGCTCCAGAACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS TCA 72 bp CGCCCACGTCCAAACACTGATTGGTGCCAAGATTCTTaGTGGCTCCATAGAAGGTGGGGTTCAGGTCGGGGA +
Preference number: 6 (lower is better)
Translates to: RPRPNTDWCQDS*WLHRRWGSGRG
Trigger: TCCCCGACCTGAACCCCACCTTCTATGGAGCCATCAAGAATCTTGGCACCAATCAGTGTTTGGACGTGGGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CCA 72 bp CTGGGATTACAGGGGGCCATGGCTGGCTTTTTGTCCTaGGATGTCAGGCAGGTACCAGATCCTGAGTTTCTG +
Preference number: 6 (lower is better)
Translates to: LGLQGAMAGFLS*DVRQVPDPEFL
Trigger: CAGAAACTCAGGATCTGGTACCTGCCTGACATCCCAGGACAAAAAGCCAGCCATGGCCCCCTGTAATCCCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS GCA 72 bp TTCTCCATGGCCTGCTCCTGGTTGCTTACATCCTTCTaGCGAATGAAGAGGAAGAGCATGAAGACGCTGCCC +
Preference number: 6 (lower is better)
Translates to: FSMACSWLLTSF*RMKRKSMKTLP
Trigger: GGGCAGCGTCTTCATGCTCTTCCTCTTCATTCGGCAGAAGGATGTAAGCAACCAGGAGCAGGCCATGGAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CCA 72 bp AGGGACTTCAGCCACGGTTTCTCCATGGCCTGCTCCTaGTTGCTTACATCCTTCTGCCGAATGAAGAGGAAG +
Preference number: 6 (lower is better)
Translates to: RDFSHGFSMACS*LLTSFCRMKRK
Trigger: CTTCCTCTTCATTCGGCAGAAGGATGTAAGCAACCAGGAGCAGGCCATGGAGAAACCGTGGCTGAAGTCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CAA 72 bp GACTTCAGCCACGGTTTCTCCATGGCCTGCTCCTGGTaGCTTACATCCTTCTGCCGAATGAAGAGGAAGAGC +
Preference number: 6 (lower is better)
Translates to: DFSHGFSMACSW*LTSFCRMKRKS
Trigger: GCTCTTCCTCTTCATTCGGCAGAAGGATGTAAGCAACCAGGAGCAGGCCATGGAGAAACCGTGGCTGAAGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS TCA 72 bp TGGCGGAGGTCCCTCTGTGATGTGTACTCAAAGTACTaGTTGCCGCCGAGGTTGTGGCAGACATACATGATG +
Preference number: 6 (lower is better)
Translates to: WRRSLCDVYSKY*LPPRLWQTYMM
Trigger: CATCATGTATGTCTGCCACAACCTCGGCGGCAATCAGTACTTTGAGTACACATCACAGAGGGACCTCCGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS TCA 72 bp CAGCTGCTTTCCAATGTTGTGGCGGAGGTCCCTCTGTaGTGTGTACTCAAAGTACTGATTGCCGCCGAGGTT +
Preference number: 6 (lower is better)
Translates to: QLLSNVVAEVPL*CVLKVLIAAEV
Trigger: AACCTCGGCGGCAATCAGTACTTTGAGTACACATCACAGAGGGACCTCCGCCACAACATTGGAAAGCAGCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CCA 72 bp GAAGTTGCCCCGGCTGTGGGCTTTGCCTCTCTGTACTaGTCTGGAGAATTGGAAGGTATTAAGGTCGATGGT +
Preference number: 6 (lower is better)
Translates to: EVAPAVGFASLY*SGELEGIKVDG
Trigger: ACCATCGACCTTAATACCTTCCAATTCTCCAGACCAGTACAGAGAGGCAAAGCCCACAGCCGGGGCAACTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS GCA 72 bp ATTGGTCCATTCTTTCTTCTGAAATGCTTTTCCATCTaGCCCAGGGCTGTTGGGATCTTGAGGTGGCCGGTC +
Preference number: 6 (lower is better)
Translates to: IGPFFLLKCFSI*PRAVGILRWPV
Trigger: GACCGGCCACCTCAAGATCCCAACAGCCCTGGGGCAGATGGAAAAGCATTTCAGAAGAAAGAATGGACCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CCA 72 bp CTGTGGGCTTTGCCTCTCTGTACTGGTCTGGAGAATTaGAAGGTATTAAGGTCGATGGTGACGATGTCTGGG +
Preference number: 6 (lower is better)
Translates to: LWALPLCTGLEN*KVLRSMVTMSG
Trigger: CCCAGACATCGTCACCATCGACCTTAATACCTTCCAATTCTCCAGACCAGTACAGAGAGGCAAAGCCCACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CCA 72 bp GAATTGGAAGGTATTAAGGTCGATGGTGACGATGTCTaGGCTCACCACCGCTGTCTTGTCTTCAGCAATTCG +
Preference number: 6 (lower is better)
Translates to: ELEGIKVDGDDV*AHHRCLVFSNS
Trigger: CGAATTGCTGAAGACAAGACAGCGGTGGTGAGCCCAGACATCGTCACCATCGACCTTAATACCTTCCAATTC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS TCA 72 bp CTTTTTGTCCTGGGATGTCAGGCAGGTACCAGATCCTaGGTTTCTGATGAGTTGATCCTGGGTCAATTCCCA +
Preference number: 6 (lower is better)
Translates to: LFVLGCQAGTRS*VSDELILGQFP
Trigger: TGGGAATTGACCCAGGATCAACTCATCAGAAACTCAGGATCTGGTACCTGCCTGACATCCCAGGACAAAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CAA 72 bp CCGAGATGTCACCGAAGTTGTTCTCCTGGACCATCTTaGCTGCCTGCAGATTTCTCCTGTAGAAAATCTTCT +
Preference number: 6 (lower is better)
Translates to: PRCHRSCSPGPS*LPADFSCRKSS
Trigger: AGAAGATTTTCTACAGGAGAAATCTGCAGGCAGCAAAGATGGTCCAGGAGAACAACTTCGGTGACATCTCGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS GCA 72 bp CGAGATGTCACCGAAGTTGTTCTCCTGGACCATCTTTaGTGCCTGCAGATTTCTCCTGTAGAAAATCTTCTT +
Preference number: 6 (lower is better)
Translates to: RDVTEVVLLDHL*CLQISPVENLL
Trigger: AAGAAGATTTTCTACAGGAGAAATCTGCAGGCAGCAAAGATGGTCCAGGAGAACAACTTCGGTGACATCTCG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2
CDS CCA 72 bp TCTTATAGCCTTCTTCCTTTTCTTTGGTCTCTAGATTaGTCCATTCTTTCTTCTGAAATGCTTTTCCATCTG +
Preference number: 6 (lower is better)
Translates to: SYSLLPFLWSLD*SILSSEMLFHL
Trigger: CAGATGGAAAAGCATTTCAGAAGAAAGAATGGACCAATCTAGAGACCAAAGAAAAGGAAGAAGGCTATAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000052069.12
ENSMUST00000159715.8
ENSMUST00000161514.2