RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GALNT10 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020520

Ensembl transcript IDs: ENSMUST00000066987.14, ENSMUST00000108846.2

Found 235 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ACACGGGTGTGGACCACCTGTCATCCCAGCACTCCACCAGTGAGATaGGAGGAGGGGAGAACTCCTGGGAGCCGGCAGCAGCTAGCCTGT +
Preference number: 1 (lower is better)
Translates to: TRVWTTCHPSTPPVR*EEGRTPGSRQQLAC
Trigger: ACAGGCTAGCTGCTGCCGGCTCCCAGGAGTTCTCCCCTCCTCCCATCTCACTGGTGGAGTGCTGGGATGACAGGTGGTCCACACCCGTGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR CCA 90 bp TCACGAGGCTGTGGCTGTGACGGCATTGGGTTGGACCGAAGCTTCTaGTGCCCTACCGCCTCTGCTTGGGTCAGGGGTTGCCTGACACCT +
Preference number: 1 (lower is better)
Translates to: SRGCGCDGIGLDRSF*CPTASAWVRGCLTP
Trigger: AGGTGTCAGGCAACCCCTGACCCAAGCAGAGGCGGTAGGGCACCAGAAGCTTCGGTCCAACCCAATGCCGTCACAGCCACAGCCTCGTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR GCA 90 bp GGGAAGGATCACCCTGGTGCACCATCCCCAGACACTCCAGCTCCATaGTGCAGAGGGTCTGACTGCTCAAGCCTCTGCAGGGGCTCTGTT +
Preference number: 1 (lower is better)
Translates to: GKDHPGAPSPDTPAP*CRGSDCSSLCRGSV
Trigger: AACAGAGCCCCTGCAGAGGCTTGAGCAGTCAGACCCTCTGCAGCATGGAGCTGGAGTGTCTGGGGATGGTGCACCAGGGTGATCCTTCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR GCA 90 bp ACATCCTTTACATCTGGCTGCAGAGGAAGGGGCCCCTCGCCTGGTTaGTGGCCAGTGCTAGCTATGGAGCACTCGGAAGTCCCAATGGCC +
Preference number: 1 (lower is better)
Translates to: TSFTSGCRGRGPSPG*WPVLAMEHSEVPMA
Trigger: GGCCATTGGGACTTCCGAGTGCTCCATAGCTAGCACTGGCCAGCAACCAGGCGAGGGGCCCCTTCCTCTGCAGCCAGATGTAAAGGATGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR GCA 90 bp AAGGATCACCCTGGTGCACCATCCCCAGACACTCCAGCTCCATGCTaGAGAGGGTCTGACTGCTCAAGCCTCTGCAGGGGCTCTGTTCCA +
Preference number: 1 (lower is better)
Translates to: KDHPGAPSPDTPAPC*RGSDCSSLCRGSVP
Trigger: TGGAACAGAGCCCCTGCAGAGGCTTGAGCAGTCAGACCCTCTGCAGCATGGAGCTGGAGTGTCTGGGGATGGTGCACCAGGGTGATCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR CCA 90 bp TCCTTTACATCTGGCTGCAGAGGAAGGGGCCCCTCGCCTGGTTGCTaGCCAGTGCTAGCTATGGAGCACTCGGAAGTCCCAATGGCCTCT +
Preference number: 1 (lower is better)
Translates to: SFTSGCRGRGPSPGC*PVLAMEHSEVPMAS
Trigger: AGAGGCCATTGGGACTTCCGAGTGCTCCATAGCTAGCACTGGCCAGCAACCAGGCGAGGGGCCCCTTCCTCTGCAGCCAGATGTAAAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 90 bp GGGAGGGCCGCACAAATAGGCAGTTGTCCCTGCTGTGGGGGCCTCTaGGTCTCAGGTTCTGCTCTGCACTTTCTGCTTGAAGTCAGACGT +
Preference number: 1 (lower is better)
Translates to: GRAAQIGSCPCCGGL*VSGSALHFLLEVRR
Trigger: ACGTCTGACTTCAAGCAGAAAGTGCAGAGCAGAACCTGAGACCCAGAGGCCCCCACAGCAGGGACAACTGCCTATTTGTGCGGCCCTCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 90 bp AGGGAGCCGCCAAGGAAAAGCACGGAGAAAGGGCTTTGGAAGCATTaGCTGGGAGCTGTTCGGTCTGGAGGTCTACTTAGCCGGCTGAAC +
Preference number: 1 (lower is better)
Translates to: REPPRKSTEKGLWKH*LGAVRSGGLLSRLN
Trigger: GTTCAGCCGGCTAAGTAGACCTCCAGACCGAACAGCTCCCAGCCAATGCTTCCAAAGCCCTTTCTCCGTGCTTTTCCTTGGCGGCTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 90 bp CTCCAAGGCAGGGAGCCGCCAAGGAAAAGCACGGAGAAAGGGCTTTaGAAGCATTGGCTGGGAGCTGTTCGGTCTGGAGGTCTACTTAGC +
Preference number: 1 (lower is better)
Translates to: LQGREPPRKSTEKGL*KHWLGAVRSGGLLS
Trigger: GCTAAGTAGACCTCCAGACCGAACAGCTCCCAGCCAATGCTTCCAAAGCCCTTTCTCCGTGCTTTTCCTTGGCGGCTCCCTGCCTTGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 90 bp TGGGGACCCGATGACCCCGATCCCAGCATCTCTAAGGCAGAGCTCTaGCCTCAGGACCATGTCTCAGTTACTTCACTGGCAAGTGACCAG +
Preference number: 1 (lower is better)
Translates to: WGPDDPDPSISKAEL*PQDHVSVTSLASDQ
Trigger: CTGGTCACTTGCCAGTGAAGTAACTGAGACATGGTCCTGAGGCCAGAGCTCTGCCTTAGAGATGCTGGGATCGGGGTCATCGGGTCCCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR GCA 90 bp CACCTTTCAGGGCTTCTGAGGACACTGCTGGCTGATGGCCTCCAGTaGTTCAGGACAGTTAATCTGCATGGAGGCACAGGAGTGAGCTGG +
Preference number: 1 (lower is better)
Translates to: HLSGLLRTLLADGLQ*FRTVNLHGGTGVSW
Trigger: CCAGCTCACTCCTGTGCCTCCATGCAGATTAACTGTCCTGAAGCACTGGAGGCCATCAGCCAGCAGTGTCCTCAGAAGCCCTGAAAGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR CCA 90 bp ACACTTGGAGAATTGCTGGTTCCTGTTCTGAGGGAAGGATCACCCTaGTGCACCATCCCCAGACACTCCAGCTCCATGCTGCAGAGGGTC +
Preference number: 1 (lower is better)
Translates to: TLGELLVPVLREGSP*CTIPRHSSSMLQRV
Trigger: GACCCTCTGCAGCATGGAGCTGGAGTGTCTGGGGATGGTGCACCAGGGTGATCCTTCCCTCAGAACAGGAACCAGCAATTCTCCAAGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR TCA 90 bp CTGCTGCGTGGGCTGTGGCACAGGCCCATCAGCAGAGTAGAAACCTaGCTCTTCAGGACAAGGATTTCCACACCTGAAGCCCAAACAAGG +
Preference number: 1 (lower is better)
Translates to: LLRGLWHRPISRVET*LFRTRISTPEAQTR
Trigger: CCTTGTTTGGGCTTCAGGTGTGGAAATCCTTGTCCTGAAGAGTCAGGTTTCTACTCTGCTGATGGGCCTGTGCCACAGCCCACGCAGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR GCA 90 bp CCAGTGCTAGCTATGGAGCACTCGGAAGTCCCAATGGCCTCTCATTaGCCTGGACCAACACAGAAGCTGGGCAATTCTAGCAGTTCCCTC +
Preference number: 1 (lower is better)
Translates to: PVLAMEHSEVPMASH*PGPTQKLGNSSSSL
Trigger: GAGGGAACTGCTAGAATTGCCCAGCTTCTGTGTTGGTCCAGGGCAATGAGAGGCCATTGGGACTTCCGAGTGCTCCATAGCTAGCACTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR TCA 90 bp ATGGCAGTGTTCTGCAGACACTTGGAGAATTGCTGGTTCCTGTTCTaGGGGAAGGATCACCCTGGTGCACCATCCCCAGACACTCCAGCT +
Preference number: 1 (lower is better)
Translates to: MAVFCRHLENCWFLF*GKDHPGAPSPDTPA
Trigger: AGCTGGAGTGTCTGGGGATGGTGCACCAGGGTGATCCTTCCCTCAGAACAGGAACCAGCAATTCTCCAAGTGTCTGCAGAACACTGCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR TCA 90 bp CTTGAACAAAGCAGAAGGCAAAGACCTACACCAGAGGCTGTCCTCTaGCCTCCACATGTGTTGTGGCACACATGGCCCTCACCCACTCTC +
Preference number: 1 (lower is better)
Translates to: LEQSRRQRPTPEAVL*PPHVLWHTWPSPTL
Trigger: GAGAGTGGGTGAGGGCCATGTGTGCCACAACACATGTGGAGGTCAGAGGACAGCCTCTGGTGTAGGTCTTTGCCTTCTGCTTTGTTCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR GCA 90 bp AGCTGGGCAATTCTAGCAGTTCCCTCAAGAACAGGCAGACTTCCTTaGCAGCAGCTGGCACACAGGTTTAAGCTGTCCCAAGGCCGATAC +
Preference number: 1 (lower is better)
Translates to: SWAILAVPSRTGRLP*QQLAHRFKLSQGRY
Trigger: GTATCGGCCTTGGGACAGCTTAAACCTGTGTGCCAGCTGCTGGCAAGGAAGTCTGCCTGTTCTTGAGGGAACTGCTAGAATTGCCCAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR GCA 90 bp GTTGTGGCACACATGGCCCTCACCCACTCTCGCAAGTGTGACAAATaGCCAGGTGAACCGATGGCAGTGTTCTGCAGACACTTGGAGAAT +
Preference number: 1 (lower is better)
Translates to: VVAHMALTHSRKCDK*PGEPMAVFCRHLEN
Trigger: ATTCTCCAAGTGTCTGCAGAACACTGCCATCGGTTCACCTGGGCATTTGTCACACTTGCGAGAGTGGGTGAGGGCCATGTGTGCCACAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR CCA 90 bp CGGAAGTCCCAATGGCCTCTCATTGCCCTGGACCAACACAGAAGCTaGGCAATTCTAGCAGTTCCCTCAAGAACAGGCAGACTTCCTTGC +
Preference number: 1 (lower is better)
Translates to: RKSQWPLIALDQHRS*AILAVPSRTGRLPC
Trigger: GCAAGGAAGTCTGCCTGTTCTTGAGGGAACTGCTAGAATTGCCCAGCTTCTGTGTTGGTCCAGGGCAATGAGAGGCCATTGGGACTTCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 90 bp CCCTCACCCACTCTCGCAAGTGTGACAAATGCCCAGGTGAACCGATaGCAGTGTTCTGCAGACACTTGGAGAATTGCTGGTTCCTGTTCT +
Preference number: 1 (lower is better)
Translates to: PSPTLASVTNAQVNR*QCSADTWRIAGSCS
Trigger: AGAACAGGAACCAGCAATTCTCCAAGTGTCTGCAGAACACTGCCATCGGTTCACCTGGGCATTTGTCACACTTGCGAGAGTGGGTGAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR TCA 90 bp GCTTTCAACAGAACCACAGAACTTTCCAGAAACTCCAGGGTTCTGTaGGGTTGGAACCACAGCAGTCATTATCTGGGGGAAGCCACCCCC +
Preference number: 1 (lower is better)
Translates to: AFNRTTELSRNSRVL*GWNHSSHYLGEATP
Trigger: GGGGGTGGCTTCCCCCAGATAATGACTGCTGTGGTTCCAACCTCACAGAACCCTGGAGTTTCTGGAAAGTTCTGTGGTTCTGTTGAAAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR TCA 90 bp GTCAGAGTTCAGCAGTCACAAATGCTGAGGTGCGCTCAGAGGAAGTaGCTGCTGGAGAAGGGGACGGAACCAGATGAGGATGGAATGAAT +
Preference number: 1 (lower is better)
Translates to: VRVQQSQMLRCAQRK*LLEKGTEPDEDGMN
Trigger: ATTCATTCCATCCTCATCTGGTTCCGTCCCCTTCTCCAGCAGTCACTTCCTCTGAGCGCACCTCAGCATTTGTGACTGCTGAACTCTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR GCA 90 bp AGGATTTCCACACCTGAAGCCCAAACAAGGTGGGGATTAAGTATCTaGAGCCAGCCACCAAGCCAACCTGGTTCTTCCTGTGACACACCT +
Preference number: 1 (lower is better)
Translates to: RISTPEAQTRWGLSI*SQPPSQPGSSCDTP
Trigger: AGGTGTGTCACAGGAAGAACCAGGTTGGCTTGGTGGCTGGCTGCAGATACTTAATCCCCACCTTGTTTGGGCTTCAGGTGTGGAAATCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR TCA 90 bp TCAGACAGAGTGCTCATATGGAAAAGGGCACTAGAAATCCACAAGTaGGCTGTGACAGCACAGGGGCTACGTGGAGGTGGTTCTACAGCA +
Preference number: 1 (lower is better)
Translates to: SDRVLIWKRALEIHK*AVTAQGLRGGGSTA
Trigger: TGCTGTAGAACCACCTCCACGTAGCCCCTGTGCTGTCACAGCTCACTTGTGGATTTCTAGTGCCCTTTTCCATATGAGCACTCTGTCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR TCA 90 bp CAGCAGAGTAGAAACCTGACTCTTCAGGACAAGGATTTCCACACCTaGAGCCCAAACAAGGTGGGGATTAAGTATCTGCAGCCAGCCACC +
Preference number: 1 (lower is better)
Translates to: QQSRNLTLQDKDFHT*SPNKVGIKYLQPAT
Trigger: GGTGGCTGGCTGCAGATACTTAATCCCCACCTTGTTTGGGCTTCAGGTGTGGAAATCCTTGTCCTGAAGAGTCAGGTTTCTACTCTGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR GCA 90 bp GCACTCTTTGTTCCTTTCACACTGCCTGACTTTAGACAAACAGGCTaGCCTGAGCACTGGATGCAGACAGTCTCCTCTGTGAGAAGTAGG +
Preference number: 1 (lower is better)
Translates to: ALFVPFTLPDFRQTG*PEHWMQTVSSVRSR
Trigger: CCTACTTCTCACAGAGGAGACTGTCTGCATCCAGTGCTCAGGGCAGCCTGTTTGTCTAAAGTCAGGCAGTGTGAAAGGAACAAAGAGTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 90 bp ATGAGTCGCTATGCTCCTTCCGAAGAGCTCAGGATGGTGGGCGGTTaGGACCACTGGAGTAAGATTTTTACAGTTACGACCATAGGTGCT +
Preference number: 1 (lower is better)
Translates to: MSRYAPSEELRMVGG*DHWSKIFTVTTIGA
Trigger: AGCACCTATGGTCGTAACTGTAAAAATCTTACTCCAGTGGTCCCAACCGCCCACCATCCTGAGCTCTTCGGAAGGAGCATAGCGACTCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR GCA 90 bp CCTGGCTGCTTGCGTTATATGCCCACACGTGCCATGGCTCATCTATaGTTTCAACAGAACCACAGAACTTTCCAGAAACTCCAGGGTTCT +
Preference number: 1 (lower is better)
Translates to: PGCLRYMPTRAMAHL*FQQNHRTFQKLQGS
Trigger: AGAACCCTGGAGTTTCTGGAAAGTTCTGTGGTTCTGTTGAAAGCATAGATGAGCCATGGCACGTGTGGGCATATAACGCAAGCAGCCAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR GCA 90 bp CCCTGGCTCAGCATCAAAACCTTGAACCAAAATATGAGTAGGATTTaGCGGAGAAAGCCTCAGCGGCAAGTGCTGATGAATTCAGGGTGG +
Preference number: 1 (lower is better)
Translates to: PWLSIKTLNQNMSRI*RRKPQRQVLMNSGW
Trigger: CCACCCTGAATTCATCAGCACTTGCCGCTGAGGCTTTCTCCGGCAAATCCTACTCATATTTTGGTTCAAGGTTTTGATGCTGAGCCAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 90 bp TTTTACAGTTACGACCATAGGTGCTCCTGGTGTCAGGCACAGGCTTaGTCTGGTAACACACATTGTCAGCTCACTGATCTGAAGCTGGAA +
Preference number: 1 (lower is better)
Translates to: FYSYDHRCSWCQAQA*SGNTHCQLTDLKLE
Trigger: TTCCAGCTTCAGATCAGTGAGCTGACAATGTGTGTTACCAGACCAAGCCTGTGCCTGACACCAGGAGCACCTATGGTCGTAACTGTAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR CCA 90 bp AACACACATTGTCAGCTCACTGATCTGAAGCTGGAAATATCAGCGTaGCTGAACAACACTCTTGTATGTCAGCAGAAGATTCTACATCAT +
Preference number: 1 (lower is better)
Translates to: NTHCQLTDLKLEISA*LNNTLVCQQKILHH
Trigger: ATGATGTAGAATCTTCTGCTGACATACAAGAGTGTTGTTCAGCCACGCTGATATTTCCAGCTTCAGATCAGTGAGCTGACAATGTGTGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR CAA 90 bp CGGCATTGGGTTGGACCGAAGCTTCTGGTGCCCTACCGCCTCTGCTaGGGTCAGGGGTTGCCTGACACCTGGCTGCTTGCGTTATATGCC +
Preference number: 2 (lower is better)
Translates to: RHWVGPKLLVPYRLC*GQGLPDTWLLALYA
Trigger: GGCATATAACGCAAGCAGCCAGGTGTCAGGCAACCCCTGACCCAAGCAGAGGCGGTAGGGCACCAGAAGCTTCGGTCCAACCCAATGCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR TCA 90 bp CCACAAGTGAGCTGTGACAGCACAGGGGCTACGTGGAGGTGGTTCTACAGCACCGGGTCAGGGGTTGCCTaGCACCTGGCTGCTTGCGTT +
Preference number: 2 (lower is better)
Translates to: PQVSCDSTGATWRWFYSTGSGVA*HLAACV
Trigger: AACGCAAGCAGCCAGGTGTCAGGCAACCCCTGACCC...GGTGCTGTAGAACCACCTCCACGTAGCCCCTGTGCTGTCACAGCTCACTTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR GCA 90 bp CCCTTGGCTGCAACACGCATCCCTGCTGGATTCTGGACACCCACCCACTCCCCTACAGGCAGACTTCCTTaGCAGCAGCTGGCACACAGG +
Preference number: 2 (lower is better)
Translates to: PLAATRIPAGFWTPTHSPTGRLP*QQLAHR
Trigger: CCTGTGTGCCAGCTGCTGGCAAGGAAGTCTGCCTGT...AGGGGAGTGGGTGGGTGTCCAGAATCCAGCAGGGATGCGTGTTGCAGCCAAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CAA 90 bp GACATCCTTTACATCTGGCTGCAGAGGAAGGGGCCCCTCGCCTGGTaGCTGGCCAGTGCTAGCTATGGAGCACTCGGAAGTCCCAATGGC +
Preference number: 2 (lower is better)
Translates to: DILYIWLQRKGPLAW*LASASYGALGSPNG
Trigger: GCCATTGGGACTTCCGAGTGCTCCATAGCTAGCACTGGCCAGCAACCAGGCGAGGGGCCCCTTCCTCTGCAGCCAGATGTAAAGGATGTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR GCA 90 bp TTGTTCCTTTCACACTGCCTGACTTTAGACAAACAGGCTGCCCTGAGCACTGGAGCCAGCCGCCCGGCCTaGTGCGTGGGCTGTGGCACA +
Preference number: 2 (lower is better)
Translates to: LFLSHCLTLDKQAALSTGASRPA*CVGCGT
Trigger: TGTGCCACAGCCCACGCAGCAGGCCGGGCGGCTGGC...TCCAGTGCTCAGGGCAGCCTGTTTGTCTAAAGTCAGGCAGTGTGAAAGGAACAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR CCA 90 bp GCCAAGGAAAAGCACGGAGAAAGGGCTTTGGAAGCATTGGCTGGGAGCTGTTCGGCAAGGGCAACCTCATaGCTCAAGGCTGCCCAGGCG +
Preference number: 2 (lower is better)
Translates to: AKEKHGERALEALAGSCSARATS*LKAAQA
Trigger: CGCCTGGGCAGCCTTGAGCCATGAGGTTGCCCTTGC...CGAACAGCTCCCAGCCAATGCTTCCAAAGCCCTTTCTCCGTGCTTTTCCTTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR CCA 90 bp TTGTCCCTGCTGTGGGGGCCTCTGGGTCTCAGGTTCTGCTCTGCACTTTCTGCTGGCCTCTCATTGCCCTaGACCAACACAGAAGCTGGG +
Preference number: 2 (lower is better)
Translates to: LSLLWGPLGLRFCSALSAGLSLP*TNTEAG
Trigger: CCCAGCTTCTGTGTTGGTCCAGGGCAATGAGAGGCC...AGCAGAAAGTGCAGAGCAGAACCTGAGACCCAGAGGCCCCCACAGCAGGGACAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR CCA 90 bp GCTATTCGGGAGGCTGAGGCAGGAGGACAGATAGTTGAAGGCCCACACCAGGAGCCTCCACATGTGTTGTaGCACACATGGCCCTCACCC +
Preference number: 2 (lower is better)
Translates to: AIREAEAGGQIVEGPHQEPPHVL*HTWPSP
Trigger: GGGTGAGGGCCATGTGTGCCACAACACATGTGGAGG...CTCCTGGTGTGGGCCTTCAACTATCTGTCCTCCTGCCTCAGCCTCCCGAATAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR-3UTR TCA 90 bp AGGTGCTCCTGGTGTCAGGCACAGGCTTGGTCTGGTAACACACATTGTCAGCTCGAGGACACTGCTGGCTaGTGGCCTCCAGTGCTTCAG +
Preference number: 2 (lower is better)
Translates to: RCSWCQAQAWSGNTHCQLEDTAG*WPPVLQ
Trigger: CTGAAGCACTGGAGGCCATCAGCCAGCAGTGTCCTC...GAGCTGACAATGTGTGTTACCAGACCAAGCCTGTGCCTGACACCAGGAGCACCT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR CAA 90 bp CCTACCGCCTCTGCTTGGGTCAGGGGTTGCCTGACACCTGGCTGCTaGCGTTATATGCCCACACGTGCCATGGCTCATCTATGCTTTCAA +
Preference number: 2 (lower is better)
Translates to: PTASAWVRGCLTPGC*RYMPTRAMAHLCFQ
Trigger: TTGAAAGCATAGATGAGCCATGGCACGTGTGGGCATATAACGCAAGCAGCCAGGTGTCAGGCAACCCCTGACCCAAGCAGAGGCGGTAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR CCA 90 bp TGGAGCACTCGGAAGTCCCAATGGCCTCTCATTGCCCTGGACCAACACAGAAGCCAGGCTCCGCCTTCTTaGAGAGCCATTGGTATGGTC +
Preference number: 2 (lower is better)
Translates to: WSTRKSQWPLIALDQHRSQAPPS*RAIGMV
Trigger: GACCATACCAATGGCTCTCCAAGAAGGCGGAGCCTG...GCTTCTGTGTTGGTCCAGGGCAATGAGAGGCCATTGGGACTTCCGAGTGCTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR CCA 90 bp GCTGACTTTGGAGATCCACTAGGCCGCCCATCAGAGCAGCTCACTGCCGCAACGATTCCAAAATGTTTCTaGAATCTCCGGGGCGGAGGG +
Preference number: 2 (lower is better)
Translates to: ADFGDPLGRPSEQLTAATIPKCF*NLRGGG
Trigger: CCCTCCGCCCCGGAGATTCCAGAAACATTTTGGAAT...CGTTGCGGCAGTGAGCTGCTCTGATGGGCGGCCTAGTGGATCTCCAAAGTCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR CCA 90 bp AAGTCCAACAGGCAAGCACCCTGGGTTCCTCGTCTGTCTCCTCCGTGTAAGAGTGTGTTGTGGCACACATaGCCCTCACCCACTCTCGCA +
Preference number: 2 (lower is better)
Translates to: KSNRQAPWVPRLSPPCKSVLWHT*PSPTLA
Trigger: TGCGAGAGTGGGTGAGGGCCATGTGTGCCACAACAC...ACTCTTACACGGAGGAGACAGACGAGGAACCCAGGGTGCTTGCCTGTTGGACTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR-3UTR TCA 90 bp GGGGAAGTGACTGCTGAGCAAGCCAGACGACCTGGGTTTGAATTCCTAGAATCTCCAGCACTCCACCAGTaGGATGGGAGGAGGGGAGAA +
Preference number: 2 (lower is better)
Translates to: GEVTAEQARRPGFEFLESPALHQ*DGRRGE
Trigger: TTCTCCCCTCCTCCCATCTCACTGGTGGAGTGCTGG...AGATTCTAGGAATTCAAACCCAGGTCGTCTGGCTTGCTCAGCAGTCACTTCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR-3UTR GCA 90 bp GGACTGAAGGGGAGTCATGATGCTGACTTTGGAGATCCACTAGGCCGCCCATCACAGGCTGGTGAGCTCTaGTATGATGTGAGCAGGCTC +
Preference number: 2 (lower is better)
Translates to: GLKGSHDADFGDPLGRPSQAGEL*YDVSRL
Trigger: GAGCCTGCTCACATCATAGCAGAGCTCACCAGCCTG...TGATGGGCGGCCTAGTGGATCTCCAAAGTCAGCATCATGACTCCCCTTCAGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR GCA 90 bp TCCACATGTGTTGTGGCACACATGGCCCTCACCCACTCTCGCAAGTGTGACAAAGACACTCCAGCTCCATaGTGCAGAGGGTCTGACTGC +
Preference number: 2 (lower is better)
Translates to: STCVVAHMALTHSRKCDKDTPAP*CRGSDC
Trigger: GCAGTCAGACCCTCTGCAGCATGGAGCTGGAGTGTC...TTTGTCACACTTGCGAGAGTGGGTGAGGGCCATGTGTGCCACAACACATGTGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR-3UTR CCA 90 bp GCCAAGGAAAAGCACGGAGAAAGGGCTTTGGAAGCATTGGCTGGGAGCTGTTCGAAGAACCCAGCACCTTaGTGCCCACCGATGCCTCTT +
Preference number: 2 (lower is better)
Translates to: AKEKHGERALEALAGSCSKNPAP*CPPMPL
Trigger: AAGAGGCATCGGTGGGCACCAAGGTGCTGGGTTCTT...CGAACAGCTCCCAGCCAATGCTTCCAAAGCCCTTTCTCCGTGCTTTTCCTTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CAA 90 bp TTTATTGAAACAAGGCCGCATTGCTCTCTGAGGACTCAACTCCCCTaGGCTGCAACACGCATCCCTGCTGGATTCTGGACACCCACCCAC +
Preference number: 2 (lower is better)
Translates to: FIETRPHCSLRTQLP*AATRIPAGFWTPTH
Trigger: GTGGGTGGGTGTCCAGAATCCAGCAGGGATGCGTGTTGCAGCCAAGGGGAGTTGAGTCCTCAGAGAGCAATGCGGCCTTGTTTCAATAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR TCA 90 bp GGACTGAAGGGGAGTCATGATGCTGACTTTGGAGATCCACTAGGCCGCCCATCACTAGAAATCCACAAGTaGGCTGTGACAGCACAGGGG +
Preference number: 2 (lower is better)
Translates to: GLKGSHDADFGDPLGRPSLEIHK*AVTAQG
Trigger: CCCCTGTGCTGTCACAGCTCACTTGTGGATTTCTAG...TGATGGGCGGCCTAGTGGATCTCCAAAGTCAGCATCATGACTCCCCTTCAGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR GCA 90 bp CAGAGGCTGTCCTCTGACCTCCACATGTGTTGTGGCACACATGGCCCTCACCCAGTTTTAATGAACTCGTaGAACCCAGAGCAATGGGCA +
Preference number: 2 (lower is better)
Translates to: QRLSSDLHMCCGTHGPHPVLMNS*NPEQWA
Trigger: TGCCCATTGCTCTGGGTTGCACGAGTTCATTAAAAC...TGGGTGAGGGCCATGTGTGCCACAACACATGTGGAGGTCAGAGGACAGCCTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR-3UTR GCA 90 bp GATGGCAGTGTTCTGCAGACACTTGGAGAATTGCTGGTTCCTGTTCTGAGGGAAGACTGCTCAAGCCTCTaGAGGGGCTCTGTTCCACCT +
Preference number: 2 (lower is better)
Translates to: DGSVLQTLGELLVPVLREDCSSL*RGSVPP
Trigger: AGGTGGAACAGAGCCCCTGCAGAGGCTTGAGCAGTC...TTCCCTCAGAACAGGAACCAGCAATTCTCCAAGTGTCTGCAGAACACTGCCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR-3UTR GCA 90 bp TTGAAGGCCCACACCAGGAGAATATTGAGAGTCGATGATGAGTCGCTATGCTCCGAAGGATCACCCTGGTaGACCATCCCCAGACACTCC +
Preference number: 2 (lower is better)
Translates to: LKAHTRRILRVDDESLCSEGSPW*TIPRHS
Trigger: GGAGTGTCTGGGGATGGTGCACCAGGGTGATCCTTC...GGAGCATAGCGACTCATCATCGACTCTCAATATTCTCCTGGTGTGGGCCTTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR-3UTR CCA 90 bp TCCACGCTCCCCTGTCTGTCTGTCTGTCTGTCTAGCAAGGCACTAGTAAGTGGTTTTGGAAGCATTGGCTaGGAGCTGTTCGGTCTGGAG +
Preference number: 2 (lower is better)
Translates to: STLPCLSVCLSSKALVSGFGSIG*ELFGLE
Trigger: CTCCAGACCGAACAGCTCCCAGCCAATGCTTCCAAA...ACCACTTACTAGTGCCTTGCTAGACAGACAGACAGACAGACAGGGGAGCGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CAA 90 bp TCTCACCTAATGGTGGCAGCAGGGCCCTGGCTCAGCATCAAAACCTaGAACCAAAATATGAGTAGGATTTGCCGGAGAAAGCCTCAGCGG +
Preference number: 2 (lower is better)
Translates to: SHLMVAAGPWLSIKT*NQNMSRICRRKPQR
Trigger: CCGCTGAGGCTTTCTCCGGCAAATCCTACTCATATTTTGGTTCAAGGTTTTGATGCTGAGCCAGGGCCCTGCTGCCACCATTAGGTGAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR TCA 90 bp GGACTGAAGGGGAGTCATGATGCTGACTTTGGAGATCCACTAGGCCGCCCATCAAGGCACGGTTTTTATTaGAACAAGGCCGCATTGCTC +
Preference number: 2 (lower is better)
Translates to: GLKGSHDADFGDPLGRPSRHGFY*NKAALL
Trigger: GAGCAATGCGGCCTTGTTTCAATAAAAACCGTGCCT...TGATGGGCGGCCTAGTGGATCTCCAAAGTCAGCATCATGACTCCCCTTCAGTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR GCA 90 bp TTGTTCCTTTCACACTGCCTGACTTTAGACAAACAGGCTGCCCTGAGCACTGGAGTAAGACAGCCTGCCTaGCACACAATGGCCTCATGG +
Preference number: 2 (lower is better)
Translates to: LFLSHCLTLDKQAALSTGVRQPA*HTMASW
Trigger: CCATGAGGCCATTGTGTGGCAGGCAGGCTGTCTTAC...TCCAGTGCTCAGGGCAGCCTGTTTGTCTAAAGTCAGGCAGTGTGAAAGGAACAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR CCA 90 bp AAATACCCAGAGAGCCAGGGGAGACATCCTTTACATCTGGCTGCAGAGGAAGGGTTCCTTGCCAGCAGCTaGCACACAGGTTTAAGCTGT +
Preference number: 2 (lower is better)
Translates to: KYPESQGRHPLHLAAEEGFLASS*HTGLSC
Trigger: ACAGCTTAAACCTGTGTGCCAGCTGCTGGCAAGGAA...CCCTTCCTCTGCAGCCAGATGTAAAGGATGTCTCCCCTGGCTCTCTGGGTATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR CCA 90 bp AAGGCAGAGCTCTGGCCTCAGGACCATGTCTCAGTTACTTCACTGGCAAGTGACTGCCCACACGTGCCATaGCTCATCTATGCTTTCAAC +
Preference number: 2 (lower is better)
Translates to: KAELWPQDHVSVTSLASDCPHVP*LIYAFN
Trigger: GTTGAAAGCATAGATGAGCCATGGCACGTGTGGGCA...GTCACTTGCCAGTGAAGTAACTGAGACATGGTCCTGAGGCCAGAGCTCTGCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR CCA 90 bp TTGTTCCTTTCACACTGCCTGACTTTAGACAAACAGGCTGCCCTGAGCACTGGAAGAGGAAGTGACTGCTaGAGAAGGGGACGGAACCAG +
Preference number: 2 (lower is better)
Translates to: LFLSHCLTLDKQAALSTGRGSDC*RRGRNQ
Trigger: CTGGTTCCGTCCCCTTCTCCAGCAGTCACTTCCTCT...TCCAGTGCTCAGGGCAGCCTGTTTGTCTAAAGTCAGGCAGTGTGAAAGGAACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR TCA 90 bp GGACACTGCTGGCTGATGGCCTCCAGTGCTTCAGGACAGTTAATCTGCATGGAGAATCAGACCCTGTCTTaGACAAAGCAGAAGGCAAAG +
Preference number: 2 (lower is better)
Translates to: GHCWLMASSASGQLICMENQTLS*TKQKAK
Trigger: CTTTGCCTTCTGCTTTGTTCAAGACAGGGTCTGATT...CTCCATGCAGATTAACTGTCCTGAAGCACTGGAGGCCATCAGCCAGCAGTGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR-3UTR GCA 90 bp GCCATGGCTCATCTATGCTTTCAACAGAACCACAGAACTTTCCAGAAACTCCAGTCCTTTACATCTGGCTaGAGAGGAAGGGGCCCCTCG +
Preference number: 2 (lower is better)
Translates to: AMAHLCFQQNHRTFQKLQSFTSG*RGRGPS
Trigger: CGAGGGGCCCCTTCCTCTGCAGCCAGATGTAAAGGA...CTGGAGTTTCTGGAAAGTTCTGTGGTTCTGTTGAAAGCATAGATGAGCCATGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR GCA 90 bp AAGTCCAACAGGCAAGCACCCTGGGTTCCTCGTCTGTCTCCTCCGTGTAAGAGTATTCTACCCTCTGTCTaGATCAGAGTCACCTTTCAG +
Preference number: 2 (lower is better)
Translates to: KSNRQAPWVPRLSPPCKSILPSV*IRVTFQ
Trigger: CTGAAAGGTGACTCTGATGCAGACAGAGGGTAGAAT...ACTCTTACACGGAGGAGACAGACGAGGAACCCAGGGTGCTTGCCTGTTGGACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR-3UTR GCA 90 bp ACACGTGCCATGGCTCATCTATGCTTTCAACAGAACCACAGAACTTTCCAGAAAGGGCACTGTCCTGTCTaGAAGGGCAACCTCATGGCT +
Preference number: 2 (lower is better)
Translates to: TRAMAHLCFQQNHRTFQKGHCPV*KGNLMA
Trigger: AGCCATGAGGTTGCCCTTGCAGACAGGACAGTGCCC...TTTCTGGAAAGTTCTGTGGTTCTGTTGAAAGCATAGATGAGCCATGGCACGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR CCA 90 bp GCCGCAACGCAAGATCTATCATTGCTGGCTGCTTTTAAAGCCAGAAGCTCTAGTTCTAAGGCAGAGCTCTaGCCTCAGGACCATGTCTCA +
Preference number: 2 (lower is better)
Translates to: AATQDLSLLAAFKARSSSSKAEL*PQDHVS
Trigger: TGAGACATGGTCCTGAGGCCAGAGCTCTGCCTTAGA...ACTAGAGCTTCTGGCTTTAAAAGCAGCCAGCAATGATAGATCTTGCGTTGCGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR CCA 90 bp TCCACATGTGTTGTGGCACACATGGCCCTCACCCACTCTCGCAAGTGTGACAAATGTTCTGCAGACACTTaGAGAATTGCTGGTTCCTGT +
Preference number: 2 (lower is better)
Translates to: STCVVAHMALTHSRKCDKCSADT*RIAGSC
Trigger: ACAGGAACCAGCAATTCTCCAAGTGTCTGCAGAACA...TTTGTCACACTTGCGAGAGTGGGTGAGGGCCATGTGTGCCACAACACATGTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR-3UTR GCA 90 bp GCCGCAACGCAAGATCTATCATTGCTGGCTGCTTTTAAAGCCAGAAGCTCTAGTCTGCTCTGCACTTTCTaGTTGAAGTCAGACGTAAAG +
Preference number: 2 (lower is better)
Translates to: AATQDLSLLAAFKARSSSLLCTF*LKSDVK
Trigger: CTTTACGTCTGACTTCAAGCAGAAAGTGCAGAGCAG...ACTAGAGCTTCTGGCTTTAAAAGCAGCCAGCAATGATAGATCTTGCGTTGCGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR CCA 90 bp GATGGCAGTGTTCTGCAGACACTTGGAGAATTGCTGGTTCCTGTTCTGAGGGAATGCAACCCAGAGCAATaGGCAAAATCCTTAGTTAGA +
Preference number: 2 (lower is better)
Translates to: DGSVLQTLGELLVPVLRECNPEQ*AKSLVR
Trigger: TCTAACTAAGGATTTTGCCCATTGCTCTGGGTTGCA...TTCCCTCAGAACAGGAACCAGCAATTCTCCAAGTGTCTGCAGAACACTGCCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR TCA 72 bp GGGTGTGGACCACCTGTCATCCCAGCACTCCACCAGTaGGATGGGAGGAGGGGAGAACTCCTGGGAGCCGGC +
Preference number: 3 (lower is better)
Translates to: GCGPPVIPALHQ*DGRRGELLGAG
Trigger: GCCGGCTCCCAGGAGTTCTCCCCTCCTCCCATCTCACTGGTGGAGTGCTGGGATGACAGGTGGTCCACACCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR GCA 72 bp AATAAAGCTTTGGAGGAAGAGGCCAGCCGCCCGGCCTaGTGCGTGGGCTGTGGCACAGGCCCATCAGCAGAG +
Preference number: 3 (lower is better)
Translates to: NKALEEEASRPA*CVGCGTGPSAE
Trigger: CTCTGCTGATGGGCCTGTGCCACAGCCCACGCAGCAGGCCGGGCGGCTGGCCTCTTCCTCCAAAGCTTTATT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR GCA 72 bp CCTGGTGCACCATCCCCAGACACTCCAGCTCCATGCTaGAGAGGGTCTGACTGCTCAAGCCTCTGCAGGGGC +
Preference number: 3 (lower is better)
Translates to: PGAPSPDTPAPC*RGSDCSSLCRG
Trigger: GCCCCTGCAGAGGCTTGAGCAGTCAGACCCTCTGCAGCATGGAGCTGGAGTGTCTGGGGATGGTGCACCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR CCA 72 bp TCTGGCTGCAGAGGAAGGGGCCCCTCGCCTGGTTGCTaGCCAGTGCTAGCTATGGAGCACTCGGAAGTCCCA +
Preference number: 3 (lower is better)
Translates to: SGCRGRGPSPGC*PVLAMEHSEVP
Trigger: TGGGACTTCCGAGTGCTCCATAGCTAGCACTGGCCAGCAACCAGGCGAGGGGCCCCTTCCTCTGCAGCCAGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 72 bp TGGACCACCTGTCATCCCAGCACTCCACCAGTGAGATaGGAGGAGGGGAGAACTCCTGGGAGCCGGCAGCAG +
Preference number: 3 (lower is better)
Translates to: WTTCHPSTPPVR*EEGRTPGSRQQ
Trigger: CTGCTGCCGGCTCCCAGGAGTTCTCCCCTCCTCCCATCTCACTGGTGGAGTGCTGGGATGACAGGTGGTCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR-3UTR CAA 90 bp GCAGTTGTCCCTGCTGTGGGGGCCTCTGGGTCTCAGGTTCTGCTCTGCACTTTCGGGCCCCTCGCCTGGTaGCTGGCCAGTGCTAGCTAT +
Preference number: 3 (lower is better)
Translates to: AVVPAVGASGSQVLLCTFGPLAW*LASASY
Trigger: ATAGCTAGCACTGGCCAGCAACCAGGCGAGGGGCCC...GAAAGTGCAGAGCAGAACCTGAGACCCAGAGGCCCCCACAGCAGGGACAACTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR GCA 72 bp ACATCTGGCTGCAGAGGAAGGGGCCCCTCGCCTGGTTaGTGGCCAGTGCTAGCTATGGAGCACTCGGAAGTC +
Preference number: 3 (lower is better)
Translates to: TSGCRGRGPSPG*WPVLAMEHSEV
Trigger: GACTTCCGAGTGCTCCATAGCTAGCACTGGCCAGCAACCAGGCGAGGGGCCCCTTCCTCTGCAGCCAGATGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR GCA 72 bp GTCTCAGGGAGGGCCGCACAAATAGGCAGTTGTCCCTaGTGTGGGGGCCTCTGGGTCTCAGGTTCTGCTCTG +
Preference number: 3 (lower is better)
Translates to: VSGRAAQIGSCP*CGGLWVSGSAL
Trigger: CAGAGCAGAACCTGAGACCCAGAGGCCCCCACAGCAGGGACAACTGCCTATTTGTGCGGCCCTCCCTGAGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR GCA 72 bp CCAGACACTCCAGCTCCATGCTGCAGAGGGTCTGACTaGTCAAGCCTCTGCAGGGGCTCTGTTCCACCTGGC +
Preference number: 3 (lower is better)
Translates to: PDTPAPCCRGSD*SSLCRGSVPPG
Trigger: GCCAGGTGGAACAGAGCCCCTGCAGAGGCTTGAGCAGTCAGACCCTCTGCAGCATGGAGCTGGAGTGTCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR GCA 72 bp CACCCTGGTGCACCATCCCCAGACACTCCAGCTCCATaGTGCAGAGGGTCTGACTGCTCAAGCCTCTGCAGG +
Preference number: 3 (lower is better)
Translates to: HPGAPSPDTPAP*CRGSDCSSLCR
Trigger: CCTGCAGAGGCTTGAGCAGTCAGACCCTCTGCAGCATGGAGCTGGAGTGTCTGGGGATGGTGCACCAGGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR TCA 72 bp GCTGCCCTGAGCACTGGATGCAGACAGTCTCCTCTGTaGGAAGTAGGGACTGCTGAAGCGAGGGGTCCACGC +
Preference number: 3 (lower is better)
Translates to: AALSTGCRQSPL*EVGTAEARGPR
Trigger: GCGTGGACCCCTCGCTTCAGCAGTCCCTACTTCTCACAGAGGAGACTGTCTGCATCCAGTGCTCAGGGCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 72 bp GTGAGCAGGCTCCGCCTTCTTGGAGAGCCATTGGTATaGTCTGTTCTCCCCGTGGCCCCACCATGTCAGTCC +
Preference number: 3 (lower is better)
Translates to: VSRLRLLGEPLV*SVLPVAPPCQS
Trigger: GGACTGACATGGTGGGGCCACGGGGAGAACAGACCATACCAATGGCTCTCCAAGAAGGCGGAGCCTGCTCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 72 bp AGGGAGGGCCGCACAAATAGGCAGTTGTCCCTGCTGTaGGGGCCTCTGGGTCTCAGGTTCTGCTCTGCACTT +
Preference number: 3 (lower is better)
Translates to: REGRTNRQLSLL*GPLGLRFCSAL
Trigger: AAGTGCAGAGCAGAACCTGAGACCCAGAGGCCCCCACAGCAGGGACAACTGCCTATTTGTGCGGCCCTCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR TCA 72 bp TGCTGGAGAAGGGGACGGAACCAGATGAGGATGGAATaGATCGGGCGAGCAAGGGAGCGAGTGAGGCTAGGG +
Preference number: 3 (lower is better)
Translates to: CWRRGRNQMRME*IGRARERVRLG
Trigger: CCCTAGCCTCACTCGCTCCCTTGCTCGCCCGATTCATTCCATCCTCATCTGGTTCCGTCCCCTTCTCCAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR GCA 72 bp GCCGCATTGCTCTCTGAGGACTCAACTCCCCTTGGCTaGAACACGCATCCCTGCTGGATTCTGGACACCCAC +
Preference number: 3 (lower is better)
Translates to: AALLSEDSTPLG*NTHPCWILDTH
Trigger: GTGGGTGTCCAGAATCCAGCAGGGATGCGTGTTGCAGCCAAGGGGAGTTGAGTCCTCAGAGAGCAATGCGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 72 bp CACTCCACCAGTGAGATGGGAGGAGGGGAGAACTCCTaGGAGCCGGCAGCAGCTAGCCTGTTGTATACATGG +
Preference number: 3 (lower is better)
Translates to: HSTSEMGGGENS*EPAAASLLYTW
Trigger: CCATGTATACAACAGGCTAGCTGCTGCCGGCTCCCAGGAGTTCTCCCCTCCTCCCATCTCACTGGTGGAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR-3UTR CAA 90 bp GCTGACTTTGGAGATCCACTAGGCCGCCCATCAGAGCAGCTCACTGCCGCAACGTTCCCAGCCGGCCACTaGTCAGACAGAGTGCTCATA +
Preference number: 3 (lower is better)
Translates to: ADFGDPLGRPSEQLTAATFPAGH*SDRVLI
Trigger: TATGAGCACTCTGTCTGACAAGTGGCCGGCTGGGAA...CGTTGCGGCAGTGAGCTGCTCTGATGGGCGGCCTAGTGGATCTCCAAAGTCAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR CAA 90 bp GCCAAGGAAAAGCACGGAGAAAGGGCTTTGGAAGCATTGGCTGGGAGCTGTTCGCAAGAACCCAGCACCTaGGTGCCCACCGATGCCTCT +
Preference number: 3 (lower is better)
Translates to: AKEKHGERALEALAGSCSQEPST*VPTDAS
Trigger: AGAGGCATCGGTGGGCACCAAGGTGCTGGGTTCTTG...CGAACAGCTCCCAGCCAATGCTTCCAAAGCCCTTTCTCCGTGCTTTTCCTTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR TCA 72 bp TTCCCTGCCTGCAGCCCCTGGACTCCCTGTCAGAGCTaGGTGGACCGCGTTAAGATCTTGAAACCTGGGATG +
Preference number: 3 (lower is better)
Translates to: FPACSPWTPCQS*VDRVKILKPGM
Trigger: CATCCCAGGTTTCAAGATCTTAACGCGGTCCACTCAGCTCTGACAGGGAGTCCAGGGGCTGCAGGCAGGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR GCA 72 bp TTGCTGGTTCCTGTTCTGAGGGAAGGATCACCCTGGTaGACCATCCCCAGACACTCCAGCTCCATGCTGCAG +
Preference number: 3 (lower is better)
Translates to: LLVPVLREGSPW*TIPRHSSSMLQ
Trigger: CTGCAGCATGGAGCTGGAGTGTCTGGGGATGGTGCACCAGGGTGATCCTTCCCTCAGAACAGGAACCAGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR CCA 72 bp AGGGAGCCGCCAAGGAAAAGCACGGAGAAAGGGCTTTaGAAGCATTGGCTGGGAGCTGTTCGGTCTGGAGGT +
Preference number: 3 (lower is better)
Translates to: REPPRKSTEKGL*KHWLGAVRSGG
Trigger: ACCTCCAGACCGAACAGCTCCCAGCCAATGCTTCCAAAGCCCTTTCTCCGTGCTTTTCCTTGGCGGCTCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR CAA 90 bp GCCAAGGAAAAGCACGGAGAAAGGGCTTTGGAAGCATTGGCTGGGAGCTGTTCGAACAGGCAGACTTCCTaGCCAGCAGCTGGCACACAG +
Preference number: 3 (lower is better)
Translates to: AKEKHGERALEALAGSCSNRQTS*PAAGTQ
Trigger: CTGTGTGCCAGCTGCTGGCAAGGAAGTCTGCCTGTT...CGAACAGCTCCCAGCCAATGCTTCCAAAGCCCTTTCTCCGTGCTTTTCCTTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR GCA 72 bp AGCTCTAGTTGGCAGGGCAGGGTAAGACAGCCTGCCTaGCACACAATGGCCTCATGGCAAGGACACTGCATT +
Preference number: 3 (lower is better)
Translates to: SSSWQGRVRQPA*HTMASWQGHCI
Trigger: AATGCAGTGTCCTTGCCATGAGGCCATTGTGTGGCAGGCAGGCTGTCTTACCCTGCCCTGCCAACTAGAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR GCA 72 bp CACATGGCCCTCACCCACTCTCGCAAGTGTGACAAATaGCCAGGTGAACCGATGGCAGTGTTCTGCAGACAC +
Preference number: 3 (lower is better)
Translates to: HMALTHSRKCDK*PGEPMAVFCRH
Trigger: GTGTCTGCAGAACACTGCCATCGGTTCACCTGGGCATTTGTCACACTTGCGAGAGTGGGTGAGGGCCATGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR CCA 72 bp GGAAAAGCACGGAGAAAGGGCTTTGGAAGCATTGGCTaGGAGCTGTTCGGTCTGGAGGTCTACTTAGCCGGC +
Preference number: 3 (lower is better)
Translates to: GKARRKGFGSIG*ELFGLEVYLAG
Trigger: GCCGGCTAAGTAGACCTCCAGACCGAACAGCTCCCAGCCAATGCTTCCAAAGCCCTTTCTCCGTGCTTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR CAA 90 bp GCCGCACAAATAGGCAGTTGTCCCTGCTGTGGGGGCCTCTGGGTCTCAGGTTCTAGGGTGAGTTCATGTTaGAGACATGGGGCTAAAGGT +
Preference number: 3 (lower is better)
Translates to: AAQIGSCPCCGGLWVSGSRVSSC*RHGAKG
Trigger: ACCTTTAGCCCCATGTCTCAAACATGAACTCACCCT...AGAACCTGAGACCCAGAGGCCCCCACAGCAGGGACAACTGCCTATTTGTGCGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR CAA 90 bp GGACTGAAGGGGAGTCATGATGCTGACTTTGGAGATCCACTAGGCCGCCCATCACCTCTGAATAAAGCTTaGGAGGAAGAGGCCAGCCGC +
Preference number: 3 (lower is better)
Translates to: GLKGSHDADFGDPLGRPSPLNKA*EEEASR
Trigger: GCGGCTGGCCTCTTCCTCCAAAGCTTTATTCAGAGG...TGATGGGCGGCCTAGTGGATCTCCAAAGTCAGCATCATGACTCCCCTTCAGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR TCA 72 bp CCACCGATGCCTCTTCTCCCACAGGAGGAAGGTTTATaGGCTCCACAGGAACCTGAGGGGTTTGTCAAGGTC +
Preference number: 3 (lower is better)
Translates to: PPMPLLPQEEGL*APQEPEGFVKV
Trigger: GACCTTGACAAACCCCTCAGGTTCCTGTGGAGCTCATAAACCTTCCTCCTGTGGGAGAAGAGGCATCGGTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR TCA 72 bp AGCAGAAGGCAAAGACCTACACCAGAGGCTGTCCTCTaGCCTCCACATGTGTTGTGGCACACATGGCCCTCA +
Preference number: 3 (lower is better)
Translates to: SRRQRPTPEAVL*PPHVLWHTWPS
Trigger: TGAGGGCCATGTGTGCCACAACACATGTGGAGGTCAGAGGACAGCCTCTGGTGTAGGTCTTTGCCTTCTGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR GCA 72 bp GCTATGGAGCACTCGGAAGTCCCAATGGCCTCTCATTaGCCTGGACCAACACAGAAGCTGGGCAATTCTAGC +
Preference number: 3 (lower is better)
Translates to: AMEHSEVPMASH*PGPTQKLGNSS
Trigger: GCTAGAATTGCCCAGCTTCTGTGTTGGTCCAGGGCAATGAGAGGCCATTGGGACTTCCGAGTGCTCCATAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 72 bp TTCCCTCAAGAACAGGCAGACTTCCTTGCCAGCAGCTaGCACACAGGTTTAAGCTGTCCCAAGGCCGATACC +
Preference number: 3 (lower is better)
Translates to: FPQEQADFLASS*HTGLSCPKADT
Trigger: GGTATCGGCCTTGGGACAGCTTAAACCTGTGTGCCAGCTGCTGGCAAGGAAGTCTGCCTGTTCTTGAGGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 72 bp GATGACCCCGATCCCAGCATCTCTAAGGCAGAGCTCTaGCCTCAGGACCATGTCTCAGTTACTTCACTGGCA +
Preference number: 3 (lower is better)
Translates to: DDPDPSISKAEL*PQDHVSVTSLA
Trigger: TGCCAGTGAAGTAACTGAGACATGGTCCTGAGGCCAGAGCTCTGCCTTAGAGATGCTGGGATCGGGGTCATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR TCA 72 bp GAACATGCTGACAGGCTGGTGAGCTCTGCTATGATGTaGGCAGGCTCCGCCTTCTTGGAGAGCCATTGGTAT +
Preference number: 3 (lower is better)
Translates to: EHADRLVSSAMM*AGSAFLESHWY
Trigger: ATACCAATGGCTCTCCAAGAAGGCGGAGCCTGCTCACATCATAGCAGAGCTCACCAGCCTGTCAGCATGTTC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR TCA 72 bp TGGTGCCCAGGTAGCCCTGAAACTAGAACGGGCATCTaGAATACCCAGAGAGCCAGGGGAGACATCCTTTAC +
Preference number: 3 (lower is better)
Translates to: WCPGSPETRTGI*NTQRARGDILY
Trigger: GTAAAGGATGTCTCCCCTGGCTCTCTGGGTATTTCAGATGCCCGTTCTAGTTTCAGGGCTACCTGGGCACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR TCA 72 bp TTCTGCAGACACTTGGAGAATTGCTGGTTCCTGTTCTaGGGGAAGGATCACCCTGGTGCACCATCCCCAGAC +
Preference number: 3 (lower is better)
Translates to: FCRHLENCWFLF*GKDHPGAPSPD
Trigger: GTCTGGGGATGGTGCACCAGGGTGATCCTTCCCTCAGAACAGGAACCAGCAATTCTCCAAGTGTCTGCAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR GCA 72 bp GGGGCCTCTGGGTCTCAGGTTCTGCTCTGCACTTTCTaGTTGAAGTCAGACGTAAAGACACTCATTGGGCTC +
Preference number: 3 (lower is better)
Translates to: GASGSQVLLCTF*LKSDVKTLIGL
Trigger: GAGCCCAATGAGTGTCTTTACGTCTGACTTCAAGCAGAAAGTGCAGAGCAGAACCTGAGACCCAGAGGCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 72 bp CCAAGGAAAAGCACGGAGAAAGGGCTTTGGAAGCATTaGCTGGGAGCTGTTCGGTCTGGAGGTCTACTTAGC +
Preference number: 3 (lower is better)
Translates to: PRKSTEKGLWKH*LGAVRSGGLLS
Trigger: GCTAAGTAGACCTCCAGACCGAACAGCTCCCAGCCAATGCTTCCAAAGCCCTTTCTCCGTGCTTTTCCTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 72 bp AGCTCTGGCCTCAGGACCATGTCTCAGTTACTTCACTaGCAAGTGACCAGCTCCTTGGAGGGTGAGTTCATG +
Preference number: 3 (lower is better)
Translates to: SSGLRTMSQLLH*QVTSSLEGEFM
Trigger: CATGAACTCACCCTCCAAGGAGCTGGTCACTTGCCAGTGAAGTAACTGAGACATGGTCCTGAGGCCAGAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 72 bp TCATTGCTGGCTGCTTTTAAAGCCAGAAGCTCTAGTTaGCAGGGCAGGGTAAGACAGCCTGCCTGCCACACA +
Preference number: 3 (lower is better)
Translates to: SLLAAFKARSSS*QGRVRQPACHT
Trigger: TGTGTGGCAGGCAGGCTGTCTTACCCTGCCCTGCCAACTAGAGCTTCTGGCTTTAAAAGCAGCCAGCAATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 72 bp CTGCCTGACTTTAGACAAACAGGCTGCCCTGAGCACTaGATGCAGACAGTCTCCTCTGTGAGAAGTAGGGAC +
Preference number: 3 (lower is better)
Translates to: LPDFRQTGCPEH*MQTVSSVRSRD
Trigger: GTCCCTACTTCTCACAGAGGAGACTGTCTGCATCCAGTGCTCAGGGCAGCCTGTTTGTCTAAAGTCAGGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 72 bp GCCCAGGTGAACCGATGGCAGTGTTCTGCAGACACTTaGAGAATTGCTGGTTCCTGTTCTGAGGGAAGGATC +
Preference number: 3 (lower is better)
Translates to: AQVNRWQCSADT*RIAGSCSEGRI
Trigger: GATCCTTCCCTCAGAACAGGAACCAGCAATTCTCCAAGTGTCTGCAGAACACTGCCATCGGTTCACCTGGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR TCA 72 bp GTGCTCATATGGAAAAGGGCACTAGAAATCCACAAGTaGGCTGTGACAGCACAGGGGCTACGTGGAGGTGGT +
Preference number: 3 (lower is better)
Translates to: VLIWKRALEIHK*AVTAQGLRGGG
Trigger: ACCACCTCCACGTAGCCCCTGTGCTGTCACAGCTCACTTGTGGATTTCTAGTGCCCTTTTCCATATGAGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR TCA 72 bp GCACGGTTTTTATTGAAACAAGGCCGCATTGCTCTCTaGGGACTCAACTCCCCTTGGCTGCAACACGCATCC +
Preference number: 3 (lower is better)
Translates to: ARFLLKQGRIAL*GLNSPWLQHAS
Trigger: GGATGCGTGTTGCAGCCAAGGGGAGTTGAGTCCTCAGAGAGCAATGCGGCCTTGTTTCAATAAAAACCGTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR GCA 72 bp ACACCTGAAGCCCAAACAAGGTGGGGATTAAGTATCTaGAGCCAGCCACCAAGCCAACCTGGTTCTTCCTGT +
Preference number: 3 (lower is better)
Translates to: TPEAQTRWGLSI*SQPPSQPGSSC
Trigger: ACAGGAAGAACCAGGTTGGCTTGGTGGCTGGCTGCAGATACTTAATCCCCACCTTGTTTGGGCTTCAGGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR GCA 72 bp GTTCCTTTCACACTGCCTGACTTTAGACAAACAGGCTaGCCTGAGCACTGGATGCAGACAGTCTCCTCTGTG +
Preference number: 3 (lower is better)
Translates to: VPFTLPDFRQTG*PEHWMQTVSSV
Trigger: CACAGAGGAGACTGTCTGCATCCAGTGCTCAGGGCAGCCTGTTTGTCTAAAGTCAGGCAGTGTGAAAGGAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 72 bp CAATGGCCTCTCATTGCCCTGGACCAACACAGAAGCTaGGCAATTCTAGCAGTTCCCTCAAGAACAGGCAGA +
Preference number: 3 (lower is better)
Translates to: QWPLIALDQHRS*AILAVPSRTGR
Trigger: TCTGCCTGTTCTTGAGGGAACTGCTAGAATTGCCCAGCTTCTGTGTTGGTCCAGGGCAATGAGAGGCCATTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 72 bp TACGACCATAGGTGCTCCTGGTGTCAGGCACAGGCTTaGTCTGGTAACACACATTGTCAGCTCACTGATCTG +
Preference number: 3 (lower is better)
Translates to: YDHRCSWCQAQA*SGNTHCQLTDL
Trigger: CAGATCAGTGAGCTGACAATGTGTGTTACCAGACCAAGCCTGTGCCTGACACCAGGAGCACCTATGGTCGTA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR-3UTR CAA 90 bp GCCGCAACGCAAGATCTATCATTGCTGGCTGCTTTTAAAGCCAGAAGCTCTAGTAGGGCTTTGGAAGCATaGGCTGGGAGCTGTTCGGTC +
Preference number: 3 (lower is better)
Translates to: AATQDLSLLAAFKARSSSRALEA*AGSCSV
Trigger: GACCGAACAGCTCCCAGCCAATGCTTCCAAAGCCCT...ACTAGAGCTTCTGGCTTTAAAAGCAGCCAGCAATGATAGATCTTGCGTTGCGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR-3UTR CAA 90 bp AAGGCAGAGCTCTGGCCTCAGGACCATGTCTCAGTTACTTCACTGGCAAGTGACCAGGGTTCTGTGAGGTaGGAACCACAGCAGTCATTA +
Preference number: 3 (lower is better)
Translates to: KAELWPQDHVSVTSLASDQGSVR*EPQQSL
Trigger: TAATGACTGCTGTGGTTCCAACCTCACAGAACCCTG...GTCACTTGCCAGTGAAGTAACTGAGACATGGTCCTGAGGCCAGAGCTCTGCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR GCA 72 bp ATTCTAGCAGTTCCCTCAAGAACAGGCAGACTTCCTTaGCAGCAGCTGGCACACAGGTTTAAGCTGTCCCAA +
Preference number: 3 (lower is better)
Translates to: ILAVPSRTGRLP*QQLAHRFKLSQ
Trigger: TTGGGACAGCTTAAACCTGTGTGCCAGCTGCTGGCAAGGAAGTCTGCCTGTTCTTGAGGGAACTGCTAGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR GCA 72 bp CAGAGCAGCTCACTGCCGCAACGCAAGATCTATCATTaGTGGCTGCTTTTAAAGCCAGAAGCTCTAGTTGGC +
Preference number: 3 (lower is better)
Translates to: QSSSLPQRKIYH*WLLLKPEALVG
Trigger: GCCAACTAGAGCTTCTGGCTTTAAAAGCAGCCAGCAATGATAGATCTTGCGTTGCGGCAGTGAGCTGCTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 72 bp AGGACAAGGATTTCCACACCTGAAGCCCAAACAAGGTaGGGATTAAGTATCTGCAGCCAGCCACCAAGCCAA +
Preference number: 3 (lower is better)
Translates to: RTRISTPEAQTR*GLSICSQPPSQ
Trigger: TTGGCTTGGTGGCTGGCTGCAGATACTTAATCCCCACCTTGTTTGGGCTTCAGGTGTGGAAATCCTTGTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 72 bp AGCAGCTCACTGCCGCAACGCAAGATCTATCATTGCTaGCTGCTTTTAAAGCCAGAAGCTCTAGTTGGCAGG +
Preference number: 3 (lower is better)
Translates to: SSSLPQRKIYHC*LLLKPEALVGR
Trigger: CCTGCCAACTAGAGCTTCTGGCTTTAAAAGCAGCCAGCAATGATAGATCTTGCGTTGCGGCAGTGAGCTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 72 bp ACTCTCGCAAGTGTGACAAATGCCCAGGTGAACCGATaGCAGTGTTCTGCAGACACTTGGAGAATTGCTGGT +
Preference number: 3 (lower is better)
Translates to: TLASVTNAQVNR*QCSADTWRIAG
Trigger: ACCAGCAATTCTCCAAGTGTCTGCAGAACACTGCCATCGGTTCACCTGGGCATTTGTCACACTTGCGAGAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR CCA 72 bp TATGCTCCTTCCGAAGAGCTCAGGATGGTGGGCGGTTaGGACCACTGGAGTAAGATTTTTACAGTTACGACC +
Preference number: 3 (lower is better)
Translates to: YAPSEELRMVGG*DHWSKIFTVTT
Trigger: GGTCGTAACTGTAAAAATCTTACTCCAGTGGTCCCAACCGCCCACCATCCTGAGCTCTTCGGAAGGAGCATA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR CCA 72 bp CACCTGGCTGCTTGCGTTATATGCCCACACGTGCCATaGCTCATCTATGCTTTCAACAGAACCACAGAACTT +
Preference number: 3 (lower is better)
Translates to: HLAACVICPHVP*LIYAFNRTTEL
Trigger: AAGTTCTGTGGTTCTGTTGAAAGCATAGATGAGCCATGGCACGTGTGGGCATATAACGCAAGCAGCCAGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR TCA 72 bp AGAACCACAGAACTTTCCAGAAACTCCAGGGTTCTGTaGGGTTGGAACCACAGCAGTCATTATCTGGGGGAA +
Preference number: 3 (lower is better)
Translates to: RTTELSRNSRVL*GWNHSSHYLGE
Trigger: TTCCCCCAGATAATGACTGCTGTGGTTCCAACCTCACAGAACCCTGGAGTTTCTGGAAAGTTCTGTGGTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR TCA 72 bp TGGGAGCCGGCAGCAGCTAGCCTGTTGTATACATGGTaGATAACAATCAGACCCTGTCTTGAACAAAGCAGA +
Preference number: 3 (lower is better)
Translates to: WEPAAASLLYTW*ITIRPCLEQSR
Trigger: TCTGCTTTGTTCAAGACAGGGTCTGATTGTTATTCACCATGTATACAACAGGCTAGCTGCTGCCGGCTCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
3UTR CCA 72 bp CACTTTCTGCTTGAAGTCAGACGTAAAGACACTCATTaGGCTCATAGGACCCGAATAAGTGTCCCTTCTCCA +
Preference number: 3 (lower is better)
Translates to: HFLLEVRRKDTH*AHRTRISVPSP
Trigger: TGGAGAAGGGACACTTATTCGGGTCCTATGAGCCCAATGAGTGTCTTTACGTCTGACTTCAAGCAGAAAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR GCA 72 bp TTGCGTTATATGCCCACACGTGCCATGGCTCATCTATaGTTTCAACAGAACCACAGAACTTTCCAGAAACTC +
Preference number: 3 (lower is better)
Translates to: LRYMPTRAMAHL*FQQNHRTFQKL
Trigger: GAGTTTCTGGAAAGTTCTGTGGTTCTGTTGAAAGCATAGATGAGCCATGGCACGTGTGGGCATATAACGCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR GCA 72 bp AGCATCAAAACCTTGAACCAAAATATGAGTAGGATTTaGCGGAGAAAGCCTCAGCGGCAAGTGCTGATGAAT +
Preference number: 3 (lower is better)
Translates to: SIKTLNQNMSRI*RRKPQRQVLMN
Trigger: ATTCATCAGCACTTGCCGCTGAGGCTTTCTCCGGCAAATCCTACTCATATTTTGGTTCAAGGTTTTGATGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CCA 72 bp ATGCTTGTTTTAATGAACTCGTGCAACCCAGAGCAATaGGCAAAATCCTTAGTTAGACAGCAGAAGATGAGA +
Preference number: 3 (lower is better)
Translates to: MLVLMNSCNPEQ*AKSLVRQQKMR
Trigger: TCTCATCTTCTGCTGTCTAACTAAGGATTTTGCCCATTGCTCTGGGTTGCACGAGTTCATTAAAACAAGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
CDS-3UTR GCA 90 bp ACTGCTCAAGCCTCTGCAGGGGCTCTGTTCCACCTGGCAGCCGGCTGGCAGCACGGGCTGCCGTCGGGCTaGCGCTCGCGGTACAGAGCC +
Preference number: 4 (lower is better)
Translates to: TAQASAGALFHLAAGWQHGLPSG*RSRYRA
Trigger: GGCTCTGTACCGCGAGCGGCAGCCCGACGGCAGCCC...GTGCTGCCAGCCGGCTGCCAGGTGGAACAGAGCCCCTGCAGAGGCTTGAGCAGT
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
CDS-3UTR CCA 90 bp GCAGTTGTCCCTGCTGTGGGGGCCTCTGGGTCTCAGGTTCTGCTCTGCACTTTCCCCAAAGCCCCACGTTaGGCAGCAGGACCAGGGCCG +
Preference number: 4 (lower is better)
Translates to: AVVPAVGASGSQVLLCTFPKAPR*AAGPGP
Trigger: CGGCCCTGGTCCTGCTGCCCAACGTGGGGCTTTGGG...GAAAGTGCAGAGCAGAACCTGAGACCCAGAGGCCCCCACAGCAGGGACAACTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CAA 72 bp GTTGGACCGAAGCTTCTGGTGCCCTACCGCCTCTGCTaGGGTCAGGGGTTGCCTGACACCTGGCTGCTTGCG +
Preference number: 4 (lower is better)
Translates to: VGPKLLVPYRLC*GQGLPDTWLLA
Trigger: CGCAAGCAGCCAGGTGTCAGGCAACCCCTGACCCAAGCAGAGGCGGTAGGGCACCAGAAGCTTCGGTCCAAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR GCA 90 bp GGACTGAAGGGGAGTCATGATGCTGACTTTGGAGATCCACTAGGCCGCCCATCAGGGCTGCCGTCGGGCTaGCGCTCGCGGTACAGAGCC +
Preference number: 4 (lower is better)
Translates to: GLKGSHDADFGDPLGRPSGLPSG*RSRYRA
Trigger: GGCTCTGTACCGCGAGCGGCAGCCCGACGGCAGCCC...TGATGGGCGGCCTAGTGGATCTCCAAAGTCAGCATCATGACTCCCCTTCAGTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR GCA 90 bp GGAGGTGATCCCTCACAGCACCGGTTCCTCTCCAAGGCAGGGAGCCGCCAAGGAAGGGGATGTCCTCCATaGGGCCCCCACACATCCACA +
Preference number: 4 (lower is better)
Translates to: GGDPSQHRFLSKAGSRQGRGCPP*GPHTST
Trigger: TGTGGATGTGTGGGGGCCGCATGGAGGACATCCCCT...TCCTTGGCGGCTCCCTGCCTTGGAGAGGAACCGGTGCTGTGAGGGATCACCTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR GCA 90 bp TCCACGCTCCCCTGTCTGTCTGTCTGTCTGTCTAGCAAGGCACTAGTAAGTGGTCCAATCCCCCAGGGCTaGCGTCGGGCTGCCGCTCGC +
Preference number: 4 (lower is better)
Translates to: STLPCLSVCLSSKALVSGPIPQG*RRAAAR
Trigger: GCGAGCGGCAGCCCGACGGCAGCCCTGGGGGATTGG...ACCACTTACTAGTGCCTTGCTAGACAGACAGACAGACAGACAGGGGAGCGTGGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CCA 90 bp CTCAAGCCTCTGCAGGGGCTCTGTTCCACCTGGCAGCCGGCTGGCAGCACCTCATCTCGGCATCGGTCATaGGGTAAGGCTTCCCCTGTT +
Preference number: 4 (lower is better)
Translates to: LKPLQGLCSTWQPAGSTSSRHRS*GKASPV
Trigger: AACAGGGGAAGCCTTACCCCATGACCGATGCCGAGA...TGAGGTGCTGCCAGCCGGCTGCCAGGTGGAACAGAGCCCCTGCAGAGGCTTGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
CDS-3UTR CCA 90 bp GGAGGTGATCCCTCACAGCACCGGTTCCTCTCCAAGGCAGGGAGCCGCCAAGGAGGCCTTCCCGTTTCTTaGTCCGGAGAATCCTCACGC +
Preference number: 4 (lower is better)
Translates to: GGDPSQHRFLSKAGSRQGGLPVS*SGESSR
Trigger: GCGTGAGGATTCTCCGGACCAAGAAACGGGAAGGCC...TCCTTGGCGGCTCCCTGCCTTGGAGAGGAACCGGTGCTGTGAGGGATCACCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CAA 72 bp CACACCTCACGAGGCTGTGGCTGTGACGGCATTGGGTaGGACCGAAGCTTCTGGTGCCCTACCGCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: HTSRGCGCDGIG*DRSFWCPTASA
Trigger: AGCAGAGGCGGTAGGGCACCAGAAGCTTCGGTCCAACCCAATGCCGTCACAGCCACAGCCTCGTGAGGTGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CAA 72 bp CTGTCCTGTCTCAGGGAGGGCCGCACAAATAGGCAGTaGTCCCTGCTGTGGGGGCCTCTGGGTCTCAGGTTC +
Preference number: 4 (lower is better)
Translates to: LSCLREGRTNRQ*SLLWGPLGLRF
Trigger: GAACCTGAGACCCAGAGGCCCCCACAGCAGGGACAACTGCCTATTTGTGCGGCCCTCCCTGAGACAGGACAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CCA 90 bp AACAGTAAGTCCAACAGGCAAGCACCCTGGGTTCCTCGTCTGTCTCCTCCGTGTCCCAAAGCCCCACGTTaGGCAGCAGGACCAGGGCCG +
Preference number: 4 (lower is better)
Translates to: NSKSNRQAPWVPRLSPPCPKAPR*AAGPGP
Trigger: CGGCCCTGGTCCTGCTGCCCAACGTGGGGCTTTGGG...ACACGGAGGAGACAGACGAGGAACCCAGGGTGCTTGCCTGTTGGACTTACTGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
CDS-3UTR CCA 90 bp CCACAAGTGAGCTGTGACAGCACAGGGGCTACGTGGAGGTGGTTCTACAGCACCGGTCTCGAGCCTCAGTaGGGAGCCCAGTGTGCCAAG +
Preference number: 4 (lower is better)
Translates to: PQVSCDSTGATWRWFYSTGLEPQ*GAQCAK
Trigger: CTTGGCACACTGGGCTCCCCACTGAGGCTCGAGACC...GGTGCTGTAGAACCACCTCCACGTAGCCCCTGTGCTGTCACAGCTCACTTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CAA 72 bp GGCCCCACCATGTCAGTCCTTCAAGAACCCAGCACCTaGGTGCCCACCGATGCCTCTTCTCCCACAGGAGGA +
Preference number: 4 (lower is better)
Translates to: GPTMSVLQEPST*VPTDASSPTGG
Trigger: TCCTCCTGTGGGAGAAGAGGCATCGGTGGGCACCAAGGTGCTGGGTTCTTGAAGGACTGACATGGTGGGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CAA 72 bp TACATCTGGCTGCAGAGGAAGGGGCCCCTCGCCTGGTaGCTGGCCAGTGCTAGCTATGGAGCACTCGGAAGT +
Preference number: 4 (lower is better)
Translates to: YIWLQRKGPLAW*LASASYGALGS
Trigger: ACTTCCGAGTGCTCCATAGCTAGCACTGGCCAGCAACCAGGCGAGGGGCCCCTTCCTCTGCAGCCAGATGTA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR TCA 90 bp TCCACGCTCCCCTGTCTGTCTGTCTGTCTGTCTAGCAAGGCACTAGTAAGTGGTGGTTCCGGGCCAGGCTaGCTCCGGCAGGGACCTTGT +
Preference number: 4 (lower is better)
Translates to: STLPCLSVCLSSKALVSGGSGPG*LRQGPC
Trigger: ACAAGGTCCCTGCCGGAGTCAGCCTGGCCCGGAACC...ACCACTTACTAGTGCCTTGCTAGACAGACAGACAGACAGACAGGGGAGCGTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR TCA 90 bp TGGAGCACTCGGAAGTCCCAATGGCCTCTCATTGCCCTGGACCAACACAGAAGCGGCAGTCGTAGAGGGTaGCTGGGCTGGTGTGGGAGA +
Preference number: 4 (lower is better)
Translates to: WSTRKSQWPLIALDQHRSGSRRG*LGWCGR
Trigger: TCTCCCACACCAGCCCAGTCACCCTCTACGACTGCC...GCTTCTGTGTTGGTCCAGGGCAATGAGAGGCCATTGGGACTTCCGAGTGCTCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CAA 72 bp CAGGGAGCCGCCAAGGAAAAGCACGGAGAAAGGGCTTaGGAAGCATTGGCTGGGAGCTGTTCGGTCTGGAGG +
Preference number: 4 (lower is better)
Translates to: QGAAKEKHGERA*EALAGSCSVWR
Trigger: CCTCCAGACCGAACAGCTCCCAGCCAATGCTTCCAAAGCCCTTTCTCCGTGCTTTTCCTTGGCGGCTCCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CAA 72 bp CCCTGCTGGATTCTGGACACCCACCCACTCCCCTTTTaGACTCCTTCCCAGCCGGCCACTTGTCAGACAGAG +
Preference number: 4 (lower is better)
Translates to: PCWILDTHPLPF*TPSQPATCQTE
Trigger: CTCTGTCTGACAAGTGGCCGGCTGGGAAGGAGTCAAAAAGGGGAGTGGGTGGGTGTCCAGAATCCAGCAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR TCA 90 bp TCAAGGCTGCCCAGGCGATTCCTAACACTTAGGGAACATGCTGACAGGCTGGTGATCTCCGGTGGCAGCTaGTGCCCCCAGCATTCGGGT +
Preference number: 4 (lower is better)
Translates to: SRLPRRFLTLREHADRLVISGGS*CPQHSG
Trigger: ACCCGAATGCTGGGGGCATCAGCTGCCACCGGAGAT...CACCAGCCTGTCAGCATGTTCCCTAAGTGTTAGGAATCGCCTGGGCAGCCTTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR GCA 90 bp TCTGACCTCCACATGTGTTGTGGCACACATGGCCCTCACCCACTCTCGCAAGTGGCCAGAGCCACCGCCTaGAAGAGCCGCTTCTCTTTG +
Preference number: 4 (lower is better)
Translates to: SDLHMCCGTHGPHPLSQVARATA*KSRFSL
Trigger: CAAAGAGAAGCGGCTCTTGCAGGCGGTGGCTCTGGC...CACTTGCGAGAGTGGGTGAGGGCCATGTGTGCCACAACACATGTGGAGGTCAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
CDS-3UTR CCA 90 bp TGGAGCACTCGGAAGTCCCAATGGCCTCTCATTGCCCTGGACCAACACAGAAGCCGGAGGTTCCACGGGTaGGTAGAACTTGGGCAGGTC +
Preference number: 4 (lower is better)
Translates to: WSTRKSQWPLIALDQHRSRRFHG*VELGQV
Trigger: GACCTGCCCAAGTTCTACCCACCCGTGGAACCTCCG...GCTTCTGTGTTGGTCCAGGGCAATGAGAGGCCATTGGGACTTCCGAGTGCTCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR TCA 90 bp GACTTTAGACAAACAGGCTGCCCTGAGCACTGGATGCAGACAGTCTCCTCTGTGCACGACATCTCCAGCTaGGAGGTGGCGGTACTCCGG +
Preference number: 4 (lower is better)
Translates to: DFRQTGCPEHWMQTVSSVHDISS*EVAVLR
Trigger: CCGGAGTACCGCCACCTCTCAGCTGGAGATGTCGTG...CACAGAGGAGACTGTCTGCATCCAGTGCTCAGGGCAGCCTGTTTGTCTAAAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR TCA 90 bp AAATACCCAGAGAGCCAGGGGAGACATCCTTTACATCTGGCTGCAGAGGAAGGGAGAGCCACTGCTGGGTaGGGGAGGAGGGATTGCAGG +
Preference number: 4 (lower is better)
Translates to: KYPESQGRHPLHLAAEEGRATAG*GRRDCR
Trigger: CCTGCAATCCCTCCTCCCTCACCCAGCAGTGGCTCT...CCCTTCCTCTGCAGCCAGATGTAAAGGATGTCTCCCCTGGCTCTCTGGGTATTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR GCA 90 bp GCCAAGGAAAAGCACGGAGAAAGGGCTTTGGAAGCATTGGCTGGGAGCTGTTCGGCCAGAGCCACCGCCTaGAAGAGCCGCTTCTCTTTG +
Preference number: 4 (lower is better)
Translates to: AKEKHGERALEALAGSCSARATA*KSRFSL
Trigger: CAAAGAGAAGCGGCTCTTGCAGGCGGTGGCTCTGGC...CGAACAGCTCCCAGCCAATGCTTCCAAAGCCCTTTCTCCGTGCTTTTCCTTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR GCA 90 bp TCAAGGCTGCCCAGGCGATTCCTAACACTTAGGGAACATGCTGACAGGCTGGTGTGTGGTCACTCTCGCTaGAGTCCATGCAGCTGCCGC +
Preference number: 4 (lower is better)
Translates to: SRLPRRFLTLREHADRLVCGHSR*SPCSCR
Trigger: GCGGCAGCTGCATGGACTGCAGCGAGAGTGACCACA...CACCAGCCTGTCAGCATGTTCCCTAAGTGTTAGGAATCGCCTGGGCAGCCTTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CCA 90 bp GGACTGAAGGGGAGTCATGATGCTGACTTTGGAGATCCACTAGGCCGCCCATCAGTCGTAGAGGGTGACTaGGCTGGTGTGGGAGACAGC +
Preference number: 4 (lower is better)
Translates to: GLKGSHDADFGDPLGRPSVVEGD*AGVGDS
Trigger: GCTGTCTCCCACACCAGCCCAGTCACCCTCTACGAC...TGATGGGCGGCCTAGTGGATCTCCAAAGTCAGCATCATGACTCCCCTTCAGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR TCA 90 bp GCCAAGGAAAAGCACGGAGAAAGGGCTTTGGAAGCATTGGCTGGGAGCTGTTCGAACTTCTTGGTGTGCTaGGGGTCTCCAGGCCGGATG +
Preference number: 4 (lower is better)
Translates to: AKEKHGERALEALAGSCSNFLVC*GSPGRM
Trigger: CATCCGGCCTGGAGACCCTCAGCACACCAAGAAGTT...CGAACAGCTCCCAGCCAATGCTTCCAAAGCCCTTTCTCCGTGCTTTTCCTTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR GCA 90 bp CAACCTCATGGCTCAAGGCTGCCCAGGCGATTCCTAACACTTAGGGAACATGCTGCACGCTGTGAACAGTaGGCAGCAGTGAGGACCAGC +
Preference number: 4 (lower is better)
Translates to: QPHGSRLPRRFLTLREHAARCEQ*AAVRTS
Trigger: GCTGGTCCTCACTGCTGCGCACTGTTCACAGCGTGC...AGCATGTTCCCTAAGTGTTAGGAATCGCCTGGGCAGCCTTGAGCCATGAGGTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR GCA 90 bp GCCAAGGAAAAGCACGGAGAAAGGGCTTTGGAAGCATTGGCTGGGAGCTGTTCGGCTGGTTGCCCTTCATaGTGTGGCAGTCGTAGAGGG +
Preference number: 4 (lower is better)
Translates to: AKEKHGERALEALAGSCSAGCPS*CGSRRG
Trigger: CCCTCTACGACTGCCACAGCATGAAGGGCAACCAGC...CGAACAGCTCCCAGCCAATGCTTCCAAAGCCCTTTCTCCGTGCTTTTCCTTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR GCA 90 bp GACTTTAGACAAACAGGCTGCCCTGAGCACTGGATGCAGACAGTCTCCTCTGTGTCTCGCTGCAGTCCATaGAGCTGCCGCTCACAGGGT +
Preference number: 4 (lower is better)
Translates to: DFRQTGCPEHWMQTVSSVSRCSP*SCRSQG
Trigger: ACCCTGTGAGCGGCAGCTGCATGGACTGCAGCGAGA...CACAGAGGAGACTGTCTGCATCCAGTGCTCAGGGCAGCCTGTTTGTCTAAAGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CAA 72 bp TATGATGTGAGCAGGCTCCGCCTTCTTGGAGAGCCATaGGTATGGTCTGTTCTCCCCGTGGCCCCACCATGT +
Preference number: 4 (lower is better)
Translates to: YDVSRLRLLGEP*VWSVLPVAPPC
Trigger: ACATGGTGGGGCCACGGGGAGAACAGACCATACCAATGGCTCTCCAAGAAGGCGGAGCCTGCTCACATCATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CAA 72 bp TCTGCTTGGGTCAGGGGTTGCCTGACACCTGGCTGCTaGCGTTATATGCCCACACGTGCCATGGCTCATCTA +
Preference number: 4 (lower is better)
Translates to: SAWVRGCLTPGC*RYMPTRAMAHL
Trigger: TAGATGAGCCATGGCACGTGTGGGCATATAACGCAAGCAGCCAGGTGTCAGGCAACCCCTGACCCAAGCAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR GCA 90 bp TCAAGGCTGCCCAGGCGATTCCTAACACTTAGGGAACATGCTGACAGGCTGGTGATATCCTACGCGCTGTaGGTCCCTCCTGATAGCCTC +
Preference number: 4 (lower is better)
Translates to: SRLPRRFLTLREHADRLVISYAL*VPPDSL
Trigger: GAGGCTATCAGGAGGGACGCACAGCGCGTAGGATAT...CACCAGCCTGTCAGCATGTTCCCTAAGTGTTAGGAATCGCCTGGGCAGCCTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR GCA 90 bp GCCGCACAAATAGGCAGTTGTCCCTGCTGTGGGGGCCTCTGGGTCTCAGGTTCTGTGAAGGTAAAGACCTaGATACTGTTCCAAGCAGCC +
Preference number: 4 (lower is better)
Translates to: AAQIGSCPCCGGLWVSGSVKVKT*ILFQAA
Trigger: GGCTGCTTGGAACAGTATGCAGGTCTTTACCTTCAC...AGAACCTGAGACCCAGAGGCCCCCACAGCAGGGACAACTGCCTATTTGTGCGGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CCA 90 bp CAACCTCATGGCTCAAGGCTGCCCAGGCGATTCCTAACACTTAGGGAACATGCTTTTTCCCGGTACGCCTaGTCCACTCTCTCGGCATCG +
Preference number: 4 (lower is better)
Translates to: QPHGSRLPRRFLTLREHAFSRYA*STLSAS
Trigger: CGATGCCGAGAGAGTGGACCAGGCGTACCGGGAAAA...AGCATGTTCCCTAAGTGTTAGGAATCGCCTGGGCAGCCTTGAGCCATGAGGTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CCA 90 bp TGGAGCACTCGGAAGTCCCAATGGCCTCTCATTGCCCTGGACCAACACAGAAGCTCATTGGGCACACGATaGTCTTCCGGTTCCGAGCAA +
Preference number: 4 (lower is better)
Translates to: WSTRKSQWPLIALDQHRSSLGTR*SSGSEQ
Trigger: TTGCTCGGAACCGGAAGACCATCGTGTGCCCAATGA...GCTTCTGTGTTGGTCCAGGGCAATGAGAGGCCATTGGGACTTCCGAGTGCTCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CCA 90 bp GACTTTAGACAAACAGGCTGCCCTGAGCACTGGATGCAGACAGTCTCCTCTGTGAGATGTGGCCCACTCTaGAGCAGGGGATGTCCTCCA +
Preference number: 4 (lower is better)
Translates to: DFRQTGCPEHWMQTVSSVRCGPL*SRGCPP
Trigger: TGGAGGACATCCCCTGCTCCAGAGTGGGCCACATCT...CACAGAGGAGACTGTCTGCATCCAGTGCTCAGGGCAGCCTGTTTGTCTAAAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CCA 90 bp GGACTGAAGGGGAGTCATGATGCTGACTTTGGAGATCCACTAGGCCGCCCATCACGGGTGGGTAGAACTTaGGCAGGTCCCAGGCAATTT +
Preference number: 4 (lower is better)
Translates to: GLKGSHDADFGDPLGRPSRVGRT*AGPRQF
Trigger: AAATTGCCTGGGACCTGCCCAAGTTCTACCCACCCG...TGATGGGCGGCCTAGTGGATCTCCAAAGTCAGCATCATGACTCCCCTTCAGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CCA 90 bp TCAAGGCTGCCCAGGCGATTCCTAACACTTAGGGAACATGCTGACAGGCTGGTGTCAAAGAGCCACTGCTaGGTGAGGGAGGAGGGATTG +
Preference number: 4 (lower is better)
Translates to: SRLPRRFLTLREHADRLVSKSHC*VREEGL
Trigger: CAATCCCTCCTCCCTCACCCAGCAGTGGCTCTTTGA...CACCAGCCTGTCAGCATGTTCCCTAAGTGTTAGGAATCGCCTGGGCAGCCTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR TCA 90 bp TCAAGGCTGCCCAGGCGATTCCTAACACTTAGGGAACATGCTGACAGGCTGGTGGATTGCAGGTGTTCATaGAGACCCTGTGGTCACTCT +
Preference number: 4 (lower is better)
Translates to: SRLPRRFLTLREHADRLVDCRCS*RPCGHS
Trigger: AGAGTGACCACAGGGTCTTCATGAACACCTGCAATC...CACCAGCCTGTCAGCATGTTCCCTAAGTGTTAGGAATCGCCTGGGCAGCCTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CCA 90 bp CAACCTCATGGCTCAAGGCTGCCCAGGCGATTCCTAACACTTAGGGAACATGCTGGAGAATCCTCACGCTaGGGAAAAGGGCCATGTAGT +
Preference number: 4 (lower is better)
Translates to: QPHGSRLPRRFLTLREHAGESSR*GKGPCS
Trigger: ACTACATGGCCCTTTTCCCCAGCGTGAGGATTCTCC...AGCATGTTCCCTAAGTGTTAGGAATCGCCTGGGCAGCCTTGAGCCATGAGGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CCA 90 bp GCTTTTAAAGCCAGAAGCTCTAGTTGGCAGGGCAGGGTAAGACAGCCTGCCTGCGATGACATCGATCATTaGGCACACGATGGTCTTCCG +
Preference number: 4 (lower is better)
Translates to: AFKARSSSWQGRVRQPACDDIDH*AHDGLP
Trigger: CGGAAGACCATCGTGTGCCCAATGATCGATGTCATC...GCAGGCAGGCTGTCTTACCCTGCCCTGCCAACTAGAGCTTCTGGCTTTAAAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR TCA 90 bp GCCATGGCTCATCTATGCTTTCAACAGAACCACAGAACTTTCCAGAAACTCCAGAACAGTGCGCAGCAGTaGGGACCAGCCCTCGTTGTG +
Preference number: 4 (lower is better)
Translates to: AMAHLCFQQNHRTFQKLQNSAQQ*GPALVV
Trigger: CACAACGAGGGCTGGTCCTCACTGCTGCGCACTGTT...CTGGAGTTTCTGGAAAGTTCTGTGGTTCTGTTGAAAGCATAGATGAGCCATGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR GCA 90 bp GATGGCAGTGTTCTGCAGACACTTGGAGAATTGCTGGTTCCTGTTCTGAGGGAAATATCCTACGCGCTGTaGGTCCCTCCTGATAGCCTC +
Preference number: 4 (lower is better)
Translates to: DGSVLQTLGELLVPVLREISYAL*VPPDSL
Trigger: GAGGCTATCAGGAGGGACGCACAGCGCGTAGGATAT...TTCCCTCAGAACAGGAACCAGCAATTCTCCAAGTGTCTGCAGAACACTGCCATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
CDS-3UTR GCA 90 bp CAACACAGAAGCTGGGCAATTCTAGCAGTTCCCTCAAGAACAGGCAGACTTCCTTGTTCAAAGAGCCACTaGTGGGTGAGGGAGGAGGGA +
Preference number: 4 (lower is better)
Translates to: QHRSWAILAVPSRTGRLPCSKSH*WVREEG
Trigger: TCCCTCCTCCCTCACCCAGCAGTGGCTCTTTGAACA...AGGAAGTCTGCCTGTTCTTGAGGGAACTGCTAGAATTGCCCAGCTTCTGTGTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CCA 90 bp TTGTTCCTTTCACACTGCCTGACTTTAGACAAACAGGCTGCCCTGAGCACTGGATCTCGGCATCGGTCATaGGGTAAGGCTTCCCCTGTT +
Preference number: 4 (lower is better)
Translates to: LFLSHCLTLDKQAALSTGSRHRS*GKASPV
Trigger: AACAGGGGAAGCCTTACCCCATGACCGATGCCGAGA...TCCAGTGCTCAGGGCAGCCTGTTTGTCTAAAGTCAGGCAGTGTGAAAGGAACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR GCA 90 bp GGACACTGCTGGCTGATGGCCTCCAGTGCTTCAGGACAGTTAATCTGCATGGAGATAGCCTCCTTGTTATaGCAGTCCTTCAGCCTTTGT +
Preference number: 4 (lower is better)
Translates to: GHCWLMASSASGQLICMEIASLL*QSFSLC
Trigger: ACAAAGGCTGAAGGACTGGCATAACAAGGAGGCTAT...CTCCATGCAGATTAACTGTCCTGAAGCACTGGAGGCCATCAGCCAGCAGTGTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
CDS-3UTR CCA 90 bp TCAAGGCTGCCCAGGCGATTCCTAACACTTAGGGAACATGCTGACAGGCTGGTGTACCGGAAGTCATCGTaGTCGATGACATCGATCATT +
Preference number: 4 (lower is better)
Translates to: SRLPRRFLTLREHADRLVYRKSS*SMTSII
Trigger: AATGATCGATGTCATCGACCACGATGACTTCCGGTA...CACCAGCCTGTCAGCATGTTCCCTAAGTGTTAGGAATCGCCTGGGCAGCCTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CAA 72 bp CACAGAACTTTCCAGAAACTCCAGGGTTCTGTGAGGTaGGAACCACAGCAGTCATTATCTGGGGGAAGCCAC +
Preference number: 4 (lower is better)
Translates to: HRTFQKLQGSVR*EPQQSLSGGSH
Trigger: GTGGCTTCCCCCAGATAATGACTGCTGTGGTTCCAACCTCACAGAACCCTGGAGTTTCTGGAAAGTTCTGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR GCA 90 bp AAGGCAGAGCTCTGGCCTCAGGACCATGTCTCAGTTACTTCACTGGCAAGTGACATAGCCTCCTTGTTATaGCAGTCCTTCAGCCTTTGT +
Preference number: 4 (lower is better)
Translates to: KAELWPQDHVSVTSLASDIASLL*QSFSLC
Trigger: ACAAAGGCTGAAGGACTGGCATAACAAGGAGGCTAT...GTCACTTGCCAGTGAAGTAACTGAGACATGGTCCTGAGGCCAGAGCTCTGCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR GCA 90 bp GCCGCAACGCAAGATCTATCATTGCTGGCTGCTTTTAAAGCCAGAAGCTCTAGTCAAGCTTCGTGTCTGTaGACAGTCCTGTGCCCACAT +
Preference number: 4 (lower is better)
Translates to: AATQDLSLLAAFKARSSSQASCL*TVLCPH
Trigger: ATGTGGGCACAGGACTGTGCACAGACACGAAGCTTG...ACTAGAGCTTCTGGCTTTAAAAGCAGCCAGCAATGATAGATCTTGCGTTGCGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CAA 72 bp GCCTCTGGGTCTCAGGTTCTGCTCTGCACTTTCTGCTaGAAGTCAGACGTAAAGACACTCATTGGGCTCATA +
Preference number: 4 (lower is better)
Translates to: ASGSQVLLCTFC*KSDVKTLIGLI
Trigger: TATGAGCCCAATGAGTGTCTTTACGTCTGACTTCAAGCAGAAAGTGCAGAGCAGAACCTGAGACCCAGAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CAA 72 bp TCAGAGCAGCTCACTGCCGCAACGCAAGATCTATCATaGCTGGCTGCTTTTAAAGCCAGAAGCTCTAGTTGG +
Preference number: 4 (lower is better)
Translates to: SEQLTAATQDLS*LAAFKARSSSW
Trigger: CCAACTAGAGCTTCTGGCTTTAAAAGCAGCCAGCAATGATAGATCTTGCGTTGCGGCAGTGAGCTGCTCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
3UTR CAA 72 bp ATGGTGGCAGCAGGGCCCTGGCTCAGCATCAAAACCTaGAACCAAAATATGAGTAGGATTTGCCGGAGAAAG +
Preference number: 4 (lower is better)
Translates to: MVAAGPWLSIKT*NQNMSRICRRK
Trigger: CTTTCTCCGGCAAATCCTACTCATATTTTGGTTCAAGGTTTTGATGCTGAGCCAGGGCCCTGCTGCCACCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR GCA 90 bp TCAAGGCTGCCCAGGCGATTCCTAACACTTAGGGAACATGCTGACAGGCTGGTGCTGGTAGATGTATTCTaGGTATTCATCCATCCATAC +
Preference number: 4 (lower is better)
Translates to: SRLPRRFLTLREHADRLVLVDVF*VFIHPY
Trigger: GTATGGATGGATGAATACGCAGAATACATCTACCAG...CACCAGCCTGTCAGCATGTTCCCTAAGTGTTAGGAATCGCCTGGGCAGCCTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CCA 90 bp CAACACAGAAGCTGGGCAATTCTAGCAGTTCCCTCAAGAACAGGCAGACTTCCTCTAAGACCGTCGAGTTaGTGTGTTCAAAGAGCCACT +
Preference number: 4 (lower is better)
Translates to: QHRSWAILAVPSRTGRLPLRPSS*CVQRAT
Trigger: AGTGGCTCTTTGAACACACCAACTCGACGGTCTTAG...AGGAAGTCTGCCTGTTCTTGAGGGAACTGCTAGAATTGCCCAGCTTCTGTGTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR GCA 90 bp GCCATGGCTCATCTATGCTTTCAACAGAACCACAGAACTTTCCAGAAACTCCAGAGGGGCTTCTTCAGGTaGTCTCGATCACTGAAGTCA +
Preference number: 4 (lower is better)
Translates to: AMAHLCFQQNHRTFQKLQRGFFR*SRSLKS
Trigger: TGACTTCAGTGATCGAGAGCACCTGAAGAAGCCCCT...CTGGAGTTTCTGGAAAGTTCTGTGGTTCTGTTGAAAGCATAGATGAGCCATGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS GCA 90 bp GGGTCTCCAGGCCGGATGTCCTCCCGCCAGGTGAAGGTAAAGACCTaGATACTGTTCCAAGCAGCCTCGCCTCGGCCCCGGATGCAGGTC +
Preference number: 5 (lower is better)
Translates to: GSPGRMSSRQVKVKT*ILFQAASPRPRMQV
Trigger: GACCTGCATCCGGGGCCGAGGCGAGGCTGCTTGGAACAGTATGCAGGTCTTTACCTTCACCTGGCGGGAGGACATCCGGCCTGGAGACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS TCA 90 bp CATCGACCAACACAATCTCCGCCACTAGCTCTGGGGGCGAGCGGTTaGGCACGCTGTGAACAGTGCGCAGCAGTGAGGACCAGCCCTCGT +
Preference number: 5 (lower is better)
Translates to: HRPTQSPPLALGASG*ARCEQCAAVRTSPR
Trigger: ACGAGGGCTGGTCCTCACTGCTGCGCACTGTTCACAGCGTGCTCAACCGCTCGCCCCCAGAGCTAGTGGCGGAGATTGTGTTGGTCGATG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CAA 90 bp TCCACATGTGTTGTGGCACACATGGCCCTCACCCACTCTCGCAAGTGTGACAAAGCCCAAAGCCCCACGTaGGGCAGCAGGACCAGGGCC +
Preference number: 5 (lower is better)
Translates to: STCVVAHMALTHSRKCDKAQSPT*GSRTRA
Trigger: GGCCCTGGTCCTGCTGCCCAACGTGGGGCTTTGGGC...TTTGTCACACTTGCGAGAGTGGGTGAGGGCCATGTGTGCCACAACACATGTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
CDS TCA 90 bp GGGCTGGTGTGGGAGACAGCGTCGAAGCAAAACTTCTTGGTGTGCTaGGGGTCTCCAGGCCGGATGTCCTCCCGCCAGGTGAAGGTAAAG +
Preference number: 5 (lower is better)
Translates to: GLVWETASKQNFLVC*GSPGRMSSRQVKVK
Trigger: CTTTACCTTCACCTGGCGGGAGGACATCCGGCCTGGAGACCCTCAGCACACCAAGAAGTTTTGCTTCGACGCTGTCTCCCACACCAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS TCA 90 bp GGGCCATGTAGTCCTCCAGGGGCTTCTTCAGGTGCTCTCGATCACTaGAGTCATCGACCAACACAATCTCCGCCACTAGCTCTGGGGGCG +
Preference number: 5 (lower is better)
Translates to: GPCSPPGASSGALDH*SHRPTQSPPLALGA
Trigger: CGCCCCCAGAGCTAGTGGCGGAGATTGTGTTGGTCGATGACTTCAGTGATCGAGAGCACCTGAAGAAGCCCCTGGAGGACTACATGGCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS TCA 90 bp GTTGAGGGAGACTCGGAGCTTTTTCTGGGCCACGACATCTCCAGCTaGGAGGTGGCGGTACTCCGGCCTGCGCTGGTAGATGTATTCTGC +
Preference number: 5 (lower is better)
Translates to: VEGDSELFLGHDISS*EVAVLRPALVDVFC
Trigger: GCAGAATACATCTACCAGCGCAGGCCGGAGTACCGCCACCTCTCAGCTGGAGATGTCGTGGCCCAGAAAAAGCTCCGAGTCTCCCTCAAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CAA 90 bp TTGTTCCTTTCACACTGCCTGACTTTAGACAAACAGGCTGCCCTGAGCACTGGAGCCCAAAGCCCCACGTaGGGCAGCAGGACCAGGGCC +
Preference number: 5 (lower is better)
Translates to: LFLSHCLTLDKQAALSTGAQSPT*GSRTRA
Trigger: GGCCCTGGTCCTGCTGCCCAACGTGGGGCTTTGGGC...TCCAGTGCTCAGGGCAGCCTGTTTGTCTAAAGTCAGGCAGTGTGAAAGGAACAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS CCA 90 bp ATCCATTTTCCCGGTACGCCTGGTCCACTCTCTCGGCATCGGTCATaGGGTAAGGCTTCCCCTGTTCTCCATATCCTACGCGCTGTGCGT +
Preference number: 5 (lower is better)
Translates to: IHFPGTPGPLSRHRS*GKASPVLHILRAVR
Trigger: ACGCACAGCGCGTAGGATATGGAGAACAGGGGAAGCCTTACCCCATGACCGATGCCGAGAGAGTGGACCAGGCGTACCGGGAAAATGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066987.14
ENSMUST00000108846.2
CDS CCA 90 bp TCCTTATCAGGCCTTCCCGTTTCTTGGTCCGGAGAATCCTCACGCTaGGGAAAAGGGCCATGTAGTCCTCCAGGGGCTTCTTCAGGTGCT +
Preference number: 5 (lower is better)
Translates to: SLSGLPVSWSGESSR*GKGPCSPPGASSGA
Trigger: AGCACCTGAAGAAGCCCCTGGAGGACTACATGGCCCTTTTCCCCAGCGTGAGGATTCTCCGGACCAAGAAACGGGAAGGCCTGATAAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS TCA 90 bp ATTTCCACAGCTGGTTGCCCTTCATGCTGTGGCAGTCGTAGAGGGTaGCTGGGCTGGTGTGGGAGACAGCGTCGAAGCAAAACTTCTTGG +
Preference number: 5 (lower is better)
Translates to: ISTAGCPSCCGSRRG*LGWCGRQRRSKTSW
Trigger: CCAAGAAGTTTTGCTTCGACGCTGTCTCCCACACCAGCCCAGTCACCCTCTACGACTGCCACAGCATGAAGGGCAACCAGCTGTGGAAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CAA 90 bp GACTTTAGACAAACAGGCTGCCCTGAGCACTGGATGCAGACAGTCTCCTCTGTGGAGGACCAGCCCTCGTaGTGGAAGGGGATGATGATG +
Preference number: 5 (lower is better)
Translates to: DFRQTGCPEHWMQTVSSVEDQPS*WKGMMM
Trigger: CATCATCATCCCCTTCCACAACGAGGGCTGGTCCTC...CACAGAGGAGACTGTCTGCATCCAGTGCTCAGGGCAGCCTGTTTGTCTAAAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CAA 90 bp AAGGCAGAGCTCTGGCCTCAGGACCATGTCTCAGTTACTTCACTGGCAAGTGACAGGCCTTCCCGTTTCTaGGTCCGGAGAATCCTCACG +
Preference number: 5 (lower is better)
Translates to: KAELWPQDHVSVTSLASDRPSRF*VRRILT
Trigger: CGTGAGGATTCTCCGGACCAAGAAACGGGAAGGCCT...GTCACTTGCCAGTGAAGTAACTGAGACATGGTCCTGAGGCCAGAGCTCTGCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CAA 90 bp GCCAAGGAAAAGCACGGAGAAAGGGCTTTGGAAGCATTGGCTGGGAGCTGTTCGGTGAGGGAGGAGGGATaGCAGGTGTTCATGAAGACC +
Preference number: 5 (lower is better)
Translates to: AKEKHGERALEALAGSCSVREEG*QVFMKT
Trigger: GGTCTTCATGAACACCTGCAATCCCTCCTCCCTCAC...CGAACAGCTCCCAGCCAATGCTTCCAAAGCCCTTTCTCCGTGCTTTTCCTTGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS CCA 90 bp TTGGGATCCGTTTGTAATACATTTCCCAGTCGAAGGCACCACGCATaGCGTCCCCAGCCTGAGTCTCATACCGGAAGTCATCGTGGTCGA +
Preference number: 5 (lower is better)
Translates to: LGSVCNTFPSRRHHA*RPQPESHTGSHRGR
Trigger: TCGACCACGATGACTTCCGGTATGAGACTCAGGCTGGGGACGCCATGCGTGGTGCCTTCGACTGGGAAATGTATTACAAACGGATCCCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CAA 90 bp CAGAGGCTGTCCTCTGACCTCCACATGTGTTGTGGCACACATGGCCCTCACCCACCAGTCCTTCAGCCTTaGTTCAGCTCCCAAGAAAAA +
Preference number: 5 (lower is better)
Translates to: QRLSSDLHMCCGTHGPHPPVLQP*FSSQEK
Trigger: TTTTTCTTGGGAGCTGAACAAAGGCTGAAGGACTGG...TGGGTGAGGGCCATGTGTGCCACAACACATGTGGAGGTCAGAGGACAGCCTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000108846.2
CDS-3UTR CAA 90 bp CCACAAGTGAGCTGTGACAGCACAGGGGCTACGTGGAGGTGGTTCTACAGCACCAGGTCCCAGGCAATTTaGGTCATAAACCACTTGAAG +
Preference number: 5 (lower is better)
Translates to: PQVSCDSTGATWRWFYSTRSQAI*VINHLK
Trigger: CTTCAAGTGGTTTATGACCAAAATTGCCTGGGACCT...GGTGCTGTAGAACCACCTCCACGTAGCCCCTGTGCTGTCACAGCTCACTTGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CAA 90 bp TCCACGCTCCCCTGTCTGTCTGTCTGTCTGTCTAGCAAGGCACTAGTAAGTGGTTATTTCCACAGCTGGTaGCCCTTCATGCTGTGGCAG +
Preference number: 5 (lower is better)
Translates to: STLPCLSVCLSSKALVSGYFHSW*PFMLWQ
Trigger: CTGCCACAGCATGAAGGGCAACCAGCTGTGGAAATA...ACCACTTACTAGTGCCTTGCTAGACAGACAGACAGACAGACAGGGGAGCGTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CAA 90 bp AAATACCCAGAGAGCCAGGGGAGACATCCTTTACATCTGGCTGCAGAGGAAGGGTACAGCGTCTTGTCCTaGCGGTATTTCCACAGCTGG +
Preference number: 5 (lower is better)
Translates to: KYPESQGRHPLHLAAEEGYSVLS*RYFHSW
Trigger: CCAGCTGTGGAAATACCGCAAGGACAAGACGCTGTA...CCCTTCCTCTGCAGCCAGATGTAAAGGATGTCTCCCCTGGCTCTCTGGGTATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CAA 90 bp TCAAGGCTGCCCAGGCGATTCCTAACACTTAGGGAACATGCTGACAGGCTGGTGTCTAAGACCGTCGAGTaGGTGTGTTCAAAGAGCCAC +
Preference number: 5 (lower is better)
Translates to: SRLPRRFLTLREHADRLVSKTVE*VCSKSH
Trigger: GTGGCTCTTTGAACACACCAACTCGACGGTCTTAGA...CACCAGCCTGTCAGCATGTTCCCTAAGTGTTAGGAATCGCCTGGGCAGCCTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS CCA 90 bp AAATTCTCTAAGACCGTCGAGTTGGTGTGTTCAAAGAGCCACTGCTaGGTGAGGGAGGAGGGATTGCAGGTGTTCATGAAGACCCTGTGG +
Preference number: 5 (lower is better)
Translates to: KFSKTVELVCSKSHC*VREEGLQVFMKTLW
Trigger: CCACAGGGTCTTCATGAACACCTGCAATCCCTCCTCCCTCACCCAGCAGTGGCTCTTTGAACACACCAACTCGACGGTCTTAGAGAATTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CAA 90 bp AAGGCAGAGCTCTGGCCTCAGGACCATGTCTCAGTTACTTCACTGGCAAGTGACCCACACATCCACACCTaGAAGGAGATCTCATACTGC +
Preference number: 5 (lower is better)
Translates to: KAELWPQDHVSVTSLASDPHIHT*KEISYC
Trigger: GCAGTATGAGATCTCCTTCAAGGTGTGGATGTGTGG...GTCACTTGCCAGTGAAGTAACTGAGACATGGTCCTGAGGCCAGAGCTCTGCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CAA 90 bp GCTTTTAAAGCCAGAAGCTCTAGTTGGCAGGGCAGGGTAAGACAGCCTGCCTGCTTGAAGCTCTTACAGTaGAGGGAGACTCGGAGCTTT +
Preference number: 5 (lower is better)
Translates to: AFKARSSSWQGRVRQPACLKLLQ*RETRSF
Trigger: AAAGCTCCGAGTCTCCCTCAACTGTAAGAGCTTCAA...GCAGGCAGGCTGTCTTACCCTGCCCTGCCAACTAGAGCTTCTGGCTTTAAAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CAA 90 bp AAGGCAGAGCTCTGGCCTCAGGACCATGTCTCAGTTACTTCACTGGCAAGTGACCCAGTCCTTCAGCCTTaGTTCAGCTCCCAAGAAAAA +
Preference number: 5 (lower is better)
Translates to: KAELWPQDHVSVTSLASDPVLQP*FSSQEK
Trigger: TTTTTCTTGGGAGCTGAACAAAGGCTGAAGGACTGG...GTCACTTGCCAGTGAAGTAACTGAGACATGGTCCTGAGGCCAGAGCTCTGCCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS GCA 90 bp CCATATCCTACGCGCTGTGCGTCCCTCCTGATAGCCTCCTTGTTATaGCAGTCCTTCAGCCTTTGTTCAGCTCCCAAGAAAAATGTCTTT +
Preference number: 5 (lower is better)
Translates to: PYPTRCASLLIASLL*QSFSLCSAPKKNVF
Trigger: AAAGACATTTTTCTTGGGAGCTGAACAAAGGCTGAAGGACTGGCATAACAAGGAGGCTATCAGGAGGGACGCACAGCGCGTAGGATATGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066987.14
ENSMUST00000108846.2
CDS-3UTR CAA 90 bp ACACGTGCCATGGCTCATCTATGCTTTCAACAGAACCACAGAACTTTCCAGAAACTCCTGATAGCCTCCTaGTTATGCCAGTCCTTCAGC +
Preference number: 5 (lower is better)
Translates to: TRAMAHLCFQQNHRTFQKLLIAS*LCQSFS
Trigger: GCTGAAGGACTGGCATAACAAGGAGGCTATCAGGAG...TTTCTGGAAAGTTCTGTGGTTCTGTTGAAAGCATAGATGAGCCATGGCACGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS-3UTR CAA 90 bp ACACGTGCCATGGCTCATCTATGCTTTCAACAGAACCACAGAACTTTCCAGAAAGGGAGCCAGTTGACGTaGGCTTCACAGTGTGAATCT +
Preference number: 5 (lower is better)
Translates to: TRAMAHLCFQQNHRTFQKGSQLT*ASQCES
Trigger: AGATTCACACTGTGAAGCCAACGTCAACTGGCTCCC...TTTCTGGAAAGTTCTGTGGTTCTGTTGAAAGCATAGATGAGCCATGGCACGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS CCA 72 bp CTCGCCTCGGCCCCGGATGCAGGTCTCGAGCCTCAGTaGGGAGCCCAGTGTGCCAAGCTTCGTGTCTGTGCA +
Preference number: 6 (lower is better)
Translates to: LASAPDAGLEPQ*GAQCAKLRVCA
Trigger: TGCACAGACACGAAGCTTGGCACACTGGGCTCCCCACTGAGGCTCGAGACCTGCATCCGGGGCCGAGGCGAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS GCA 72 bp GGATGCAGGTCTCGAGCCTCAGTGGGGAGCCCAGTGTaGCAAGCTTCGTGTCTGTGCACAGTCCTGTGCCCA +
Preference number: 6 (lower is better)
Translates to: GCRSRASVGSPV*QASCLCTVLCP
Trigger: TGGGCACAGGACTGTGCACAGACACGAAGCTTGGCACACTGGGCTCCCCACTGAGGCTCGAGACCTGCATCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS TCA 72 bp ATACCTCTGCCACTCGCTTCAGGTTCCGGGCCAGGCTaGCTCCGGCAGGGACCTTGTAGGGCACATACTTCC +
Preference number: 6 (lower is better)
Translates to: IPLPLASGSGPG*LRQGPCRAHTS
Trigger: GGAAGTATGTGCCCTACAAGGTCCCTGCCGGAGTCAGCCTGGCCCGGAACCTGAAGCGAGTGGCAGAGGTAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS TCA 72 bp TGGGAGACAGCGTCGAAGCAAAACTTCTTGGTGTGCTaGGGGTCTCCAGGCCGGATGTCCTCCCGCCAGGTG +
Preference number: 6 (lower is better)
Translates to: WETASKQNFLVC*GSPGRMSSRQV
Trigger: CACCTGGCGGGAGGACATCCGGCCTGGAGACCCTCAGCACACCAAGAAGTTTTGCTTCGACGCTGTCTCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS CCA 72 bp CCCGGTACGCCTGGTCCACTCTCTCGGCATCGGTCATaGGGTAAGGCTTCCCCTGTTCTCCATATCCTACGC +
Preference number: 6 (lower is better)
Translates to: PGTPGPLSRHRS*GKASPVLHILR
Trigger: GCGTAGGATATGGAGAACAGGGGAAGCCTTACCCCATGACCGATGCCGAGAGAGTGGACCAGGCGTACCGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066987.14
ENSMUST00000108846.2
CDS CCA 72 bp GGCTGGTGTGGGAGACAGCGTCGAAGCAAAACTTCTTaGTGTGCTGAGGGTCTCCAGGCCGGATGTCCTCCC +
Preference number: 6 (lower is better)
Translates to: GWCGRQRRSKTS*CAEGLQAGCPP
Trigger: GGGAGGACATCCGGCCTGGAGACCCTCAGCACACCAAGAAGTTTTGCTTCGACGCTGTCTCCCACACCAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS TCA 72 bp GCTGGTTGCCCTTCATGCTGTGGCAGTCGTAGAGGGTaGCTGGGCTGGTGTGGGAGACAGCGTCGAAGCAAA +
Preference number: 6 (lower is better)
Translates to: AGCPSCCGSRRG*LGWCGRQRRSK
Trigger: TTTGCTTCGACGCTGTCTCCCACACCAGCCCAGTCACCCTCTACGACTGCCACAGCATGAAGGGCAACCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS CCA 72 bp GGCCTTCCCGTTTCTTGGTCCGGAGAATCCTCACGCTaGGGAAAAGGGCCATGTAGTCCTCCAGGGGCTTCT +
Preference number: 6 (lower is better)
Translates to: GLPVSWSGESSR*GKGPCSPPGAS
Trigger: AGAAGCCCCTGGAGGACTACATGGCCCTTTTCCCCAGCGTGAGGATTCTCCGGACCAAGAAACGGGAAGGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS CAA 72 bp CCCAGCATTCGGGTCCTTATCAGGCCTTCCCGTTTCTaGGTCCGGAGAATCCTCACGCTGGGGAAAAGGGCC +
Preference number: 6 (lower is better)
Translates to: PSIRVLIRPSRF*VRRILTLGKRA
Trigger: GGCCCTTTTCCCCAGCGTGAGGATTCTCCGGACCAAGAAACGGGAAGGCCTGATAAGGACCCGAATGCTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS CCA 72 bp CCAGCATTCGGGTCCTTATCAGGCCTTCCCGTTTCTTaGTCCGGAGAATCCTCACGCTGGGGAAAAGGGCCA +
Preference number: 6 (lower is better)
Translates to: PAFGSLSGLPVS*SGESSRWGKGP
Trigger: TGGCCCTTTTCCCCAGCGTGAGGATTCTCCGGACCAAGAAACGGGAAGGCCTGATAAGGACCCGAATGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS GCA 72 bp CGACATCTCCAGCTGAGAGGTGGCGGTACTCCGGCCTaGGCTGGTAGATGTATTCTGCGTATTCATCCATCC +
Preference number: 6 (lower is better)
Translates to: RHLQLRGGGTPA*AGRCILRIHPS
Trigger: GGATGGATGAATACGCAGAATACATCTACCAGCGCAGGCCGGAGTACCGCCACCTCTCAGCTGGAGATGTCG
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS GCA 72 bp GTAAGGCTTCCCCTGTTCTCCATATCCTACGCGCTGTaGGTCCCTCCTGATAGCCTCCTTGTTATGCCAGTC +
Preference number: 6 (lower is better)
Translates to: VRLPLFSISYAL*VPPDSLLVMPV
Trigger: GACTGGCATAACAAGGAGGCTATCAGGAGGGACGCACAGCGCGTAGGATATGGAGAACAGGGGAAGCCTTAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066987.14
ENSMUST00000108846.2
CDS CCA 72 bp AAGCTCTTACAGTTGAGGGAGACTCGGAGCTTTTTCTaGGCCACGACATCTCCAGCTGAGAGGTGGCGGTAC +
Preference number: 6 (lower is better)
Translates to: KLLQLRETRSFF*ATTSPAERWRY
Trigger: GTACCGCCACCTCTCAGCTGGAGATGTCGTGGCCCAGAAAAAGCTCCGAGTCTCCCTCAACTGTAAGAGCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS CAA 72 bp TATCCTACGCGCTGTGCGTCCCTCCTGATAGCCTCCTaGTTATGCCAGTCCTTCAGCCTTTGTTCAGCTCCC +
Preference number: 6 (lower is better)
Translates to: YPTRCASLLIAS*LCQSFSLCSAP
Trigger: GGGAGCTGAACAAAGGCTGAAGGACTGGCATAACAAGGAGGCTATCAGGAGGGACGCACAGCGCGTAGGATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066987.14
ENSMUST00000108846.2
CDS TCA 72 bp AGTCCTCCAGGGGCTTCTTCAGGTGCTCTCGATCACTaGAGTCATCGACCAACACAATCTCCGCCACTAGCT +
Preference number: 6 (lower is better)
Translates to: SPPGASSGALDH*SHRPTQSPPLA
Trigger: AGCTAGTGGCGGAGATTGTGTTGGTCGATGACTTCAGTGATCGAGAGCACCTGAAGAAGCCCCTGGAGGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS TCA 72 bp CAGCCTGAGTCTCATACCGGAAGTCATCGTGGTCGATaGCATCGATCATTGGGCACACGATGGTCTTCCGGT +
Preference number: 6 (lower is better)
Translates to: QPESHTGSHRGR*HRSLGTRWSSG
Trigger: ACCGGAAGACCATCGTGTGCCCAATGATCGATGTCATCGACCACGATGACTTCCGGTATGAGACTCAGGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS GCA 72 bp ACGCGCTGTGCGTCCCTCCTGATAGCCTCCTTGTTATaGCAGTCCTTCAGCCTTTGTTCAGCTCCCAAGAAA +
Preference number: 6 (lower is better)
Translates to: TRCASLLIASLL*QSFSLCSAPKK
Trigger: TTTCTTGGGAGCTGAACAAAGGCTGAAGGACTGGCATAACAAGGAGGCTATCAGGAGGGACGCACAGCGCGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066987.14
ENSMUST00000108846.2
CDS CCA 72 bp GTTTGTAATACATTTCCCAGTCGAAGGCACCACGCATaGCGTCCCCAGCCTGAGTCTCATACCGGAAGTCAT +
Preference number: 6 (lower is better)
Translates to: VCNTFPSRRHHA*RPQPESHTGSH
Trigger: ATGACTTCCGGTATGAGACTCAGGCTGGGGACGCCATGCGTGGTGCCTTCGACTGGGAAATGTATTACAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS CAA 90 bp TGTTCTCCATATCCTACGCGCTGTGCGTCCCTCCTGATAGCCTCCTaGTTATGCCAGTCCTTCAGCCTTTGTTCAGCTCCCAAGAAAAAT +
Preference number: 6 (lower is better)
Translates to: CSPYPTRCASLLIAS*LCQSFSLCSAPKKN
Trigger: ATTTTTCTTGGGAGCTGAACAAAGGCTGAAGGACTGGCATAACAAGGAGGCTATCAGGAGGGACGCACAGCGCGTAGGATATGGAGAACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066987.14
ENSMUST00000108846.2
CDS CAA 90 bp AGGTCCCAGGCAATTTTGGTCATAAACCACTTGAAGCTCTTACAGTaGAGGGAGACTCGGAGCTTTTTCTGGGCCACGACATCTCCAGCT +
Preference number: 6 (lower is better)
Translates to: RSQAILVINHLKLLQ*RETRSFFWATTSPA
Trigger: AGCTGGAGATGTCGTGGCCCAGAAAAAGCTCCGAGTCTCCCTCAACTGTAAGAGCTTCAAGTGGTTTATGACCAAAATTGCCTGGGACCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS CAA 72 bp TTGGGCAGGTCCCAGGCAATTTTGGTCATAAACCACTaGAAGCTCTTACAGTTGAGGGAGACTCGGAGCTTT +
Preference number: 6 (lower is better)
Translates to: LGRSQAILVINH*KLLQLRETRSF
Trigger: AAAGCTCCGAGTCTCCCTCAACTGTAAGAGCTTCAAGTGGTTTATGACCAAAATTGCCTGGGACCTGCCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14
CDS CAA 72 bp GCAATTTTGGTCATAAACCACTTGAAGCTCTTACAGTaGAGGGAGACTCGGAGCTTTTTCTGGGCCACGACA +
Preference number: 6 (lower is better)
Translates to: AILVINHLKLLQ*RETRSFFWATT
Trigger: TGTCGTGGCCCAGAAAAAGCTCCGAGTCTCCCTCAACTGTAAGAGCTTCAAGTGGTTTATGACCAAAATTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000066987.14