RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GADD45B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000015312

Ensembl transcript IDs: ENSMUST00000015456.10, ENSMUST00000220246.2

Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGTGCTGCTCCTGGCTCCACAGCCCAGAGGGCGGGCGGGCGCACGTaGCCCTCTCCTCATCTCAGTCTCGGTGACTCCGCCCCTCCCAGA +
Preference number: 1 (lower is better)
Translates to: GAAPGSTAQRAGGRT*PSPHLSLGDSAPPR
Trigger: TCTGGGAGGGGCGGAGTCACCGAGACTGAGATGAGGAGAGGGGCACGTGCGCCCGCCCGCCCTCTGGGCTGTGGAGCCAGGAGCAGCACC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
3UTR GCA 90 bp GAGTCCCGGGTCCCGCGGCGAGGGTCGTCGCCCTCCGCTGACTTATaGACAGTTCACTGTCCCGCAGGGTGGGGGACGCCTCACCCCACC +
Preference number: 1 (lower is better)
Translates to: ESRVPRRGSSPSADL*TVHCPAGWGTPHPT
Trigger: GGTGGGGTGAGGCGTCCCCCACCCTGCGGGACAGTGAACTGTGCATAAGTCAGCGGAGGGCGACGACCCTCGCCGCGGGACCCGGGACTC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
3UTR CCA 90 bp ACCCCTGCGGCGGTGTCCAGACCGTCTGCGGCTGCGAGCAGAGGCTaGCTGCAGGACTGCCAGGCCTTGGCTCTAAAGTCTCAGTCTCCT +
Preference number: 1 (lower is better)
Translates to: TPAAVSRPSAAASRG*LQDCQALALKSQSP
Trigger: AGGAGACTGAGACTTTAGAGCCAAGGCCTGGCAGTCCTGCAGCCAGCCTCTGCTCGCAGCCGCAGACGGTCTGGACACCGCCGCAGGGGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
3UTR GCA 90 bp CTGCCAGGCCTTGGCTCTAAAGTCTCAGTCTCCTCTTGCCTGAGGTaGCCTCCTTCCGACCTCGGCGACCACCTGTGGTGCTGCTCCTGG +
Preference number: 1 (lower is better)
Translates to: LPGLGSKVSVSSCLR*PPSDLGDHLWCCSW
Trigger: CCAGGAGCAGCACCACAGGTGGTCGCCGAGGTCGGAAGGAGGGCACCTCAGGCAAGAGGAGACTGAGACTTTAGAGCCAAGGCCTGGCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
3UTR GCA 90 bp GCTGCAGGACTGCCAGGCCTTGGCTCTAAAGTCTCAGTCTCCTCTTaGCTGAGGTGCCCTCCTTCCGACCTCGGCGACCACCTGTGGTGC +
Preference number: 1 (lower is better)
Translates to: AAGLPGLGSKVSVSS*LRCPPSDLGDHLWC
Trigger: GCACCACAGGTGGTCGCCGAGGTCGGAAGGAGGGCACCTCAGGCAAGAGGAGACTGAGACTTTAGAGCCAAGGCCTGGCAGTCCTGCAGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
3UTR TCA 90 bp CAGGACTGCCAGGCCTTGGCTCTAAAGTCTCAGTCTCCTCTTGCCTaGGGTGCCCTCCTTCCGACCTCGGCGACCACCTGTGGTGCTGCT +
Preference number: 1 (lower is better)
Translates to: QDCQALALKSQSPLA*GALLPTSATTCGAA
Trigger: AGCAGCACCACAGGTGGTCGCCGAGGTCGGAAGGAGGGCACCTCAGGCAAGAGGAGACTGAGACTTTAGAGCCAAGGCCTGGCAGTCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
3UTR-3UTR GCA 90 bp TGTAGCTGCGAAGTCCCGGGCTCGAGTCCCGGGTCCCGCGGCGAGGGTCGTCGCGGCGACCACCTGTGGTaGTGCTCCTGGCTCCACAGC +
Preference number: 2 (lower is better)
Translates to: CSCEVPGSSPGSRGEGRRGDHLW*CSWLHS
Trigger: GCTGTGGAGCCAGGAGCAGCACCACAGGTGGTCGCC...GCGACGACCCTCGCCGCGGGACCCGGGACTCGAGCCCGGGACTTCGCAGCTACA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
3UTR-3UTR GCA 90 bp GGGCTCGAGTCCCGGGTCCCGCGGCGAGGGTCGTCGCCCTCCGCTGACTTATGCCAGACCGTCTGCGGCTaGGAGCAGAGGCTGGCTGCA +
Preference number: 2 (lower is better)
Translates to: GLESRVPRRGSSPSADLCQTVCG*EQRLAA
Trigger: TGCAGCCAGCCTCTGCTCGCAGCCGCAGACGGTCTG...GCATAAGTCAGCGGAGGGCGACGACCCTCGCCGCGGGACCCGGGACTCGAGCCC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
3UTR-3UTR CCA 90 bp TGTAGCTGCGAAGTCCCGGGCTCGAGTCCCGGGTCCCGCGGCGAGGGTCGTCGCCTGTGGTGCTGCTCCTaGCTCCACAGCCCAGAGGGC +
Preference number: 2 (lower is better)
Translates to: CSCEVPGSSPGSRGEGRRLWCCS*LHSPEG
Trigger: GCCCTCTGGGCTGTGGAGCCAGGAGCAGCACCACAG...GCGACGACCCTCGCCGCGGGACCCGGGACTCGAGCCCGGGACTTCGCAGCTACA
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
3UTR-3UTR CCA 90 bp TCGAGTCCCGGGTCCCGCGGCGAGGGTCGTCGCCCTCCGCTGACTTATGCACAGCTCGGCGACCACCTGTaGTGCTGCTCCTGGCTCCAC +
Preference number: 2 (lower is better)
Translates to: SSPGSRGEGRRPPLTYAQLGDHL*CCSWLH
Trigger: GTGGAGCCAGGAGCAGCACCACAGGTGGTCGCCGAG...CTGTGCATAAGTCAGCGGAGGGCGACGACCCTCGCCGCGGGACCCGGGACTCGA
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
3UTR-3UTR CCA 90 bp CCGGGCTCGAGTCCCGGGTCCCGCGGCGAGGGTCGTCGCCCTCCGCTGACTTATTTTGAGGGATTGTTCTaGGGGATGAGGGGGCTGTCA +
Preference number: 2 (lower is better)
Translates to: PGSSPGSRGEGRRPPLTYFEGLF*GMRGLS
Trigger: TGACAGCCCCCTCATCCCCCAGAACAATCCCTCAAA...ATAAGTCAGCGGAGGGCGACGACCCTCGCCGCGGGACCCGGGACTCGAGCCCGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
3UTR-3UTR GCA 90 bp GGACTGCCAGGCCTTGGCTCTAAAGTCTCAGTCTCCTCTTGCCTGAGGTGCCCTGACCACCTGTGGTGCTaGTCCTGGCTCCACAGCCCA +
Preference number: 2 (lower is better)
Translates to: GLPGLGSKVSVSSCLRCPDHLWC*SWLHSP
Trigger: TGGGCTGTGGAGCCAGGAGCAGCACCACAGGTGGTC...AGGGCACCTCAGGCAAGAGGAGACTGAGACTTTAGAGCCAAGGCCTGGCAGTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
3UTR CCA 72 bp CCTTCCGACCTCGGCGACCACCTGTGGTGCTGCTCCTaGCTCCACAGCCCAGAGGGCGGGCGGGCGCACGTG +
Preference number: 3 (lower is better)
Translates to: PSDLGDHLWCCS*LHSPEGGRAHV
Trigger: CACGTGCGCCCGCCCGCCCTCTGGGCTGTGGAGCCAGGAGCAGCACCACAGGTGGTCGCCGAGGTCGGAAGG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
3UTR GCA 72 bp GCCTCACCCCACCCCTGCGGCGGTGTCCAGACCGTCTaGGGCTGCGAGCAGAGGCTGGCTGCAGGACTGCCA +
Preference number: 3 (lower is better)
Translates to: ASPHPCGGVQTV*GCEQRLAAGLP
Trigger: TGGCAGTCCTGCAGCCAGCCTCTGCTCGCAGCCGCAGACGGTCTGGACACCGCCGCAGGGGTGGGGTGAGGC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
3UTR CCA 72 bp CTGAGGTGCCCTCCTTCCGACCTCGGCGACCACCTGTaGTGCTGCTCCTGGCTCCACAGCCCAGAGGGCGGG +
Preference number: 3 (lower is better)
Translates to: LRCPPSDLGDHL*CCSWLHSPEGG
Trigger: CCCGCCCTCTGGGCTGTGGAGCCAGGAGCAGCACCACAGGTGGTCGCCGAGGTCGGAAGGAGGGCACCTCAG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
3UTR TCA 72 bp CGGGCGCACGTGCCCCTCTCCTCATCTCAGTCTCGGTaGCTCCGCCCCTCCCAGAAGGTATCACGGGTAGGG +
Preference number: 3 (lower is better)
Translates to: RAHVPLSSSQSR*LRPSQKVSRVG
Trigger: CCCTACCCGTGATACCTTCTGGGAGGGGCGGAGTCACCGAGACTGAGATGAGGAGAGGGGCACGTGCGCCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
3UTR GCA 72 bp CTGCCAGGCCTTGGCTCTAAAGTCTCAGTCTCCTCTTaGCTGAGGTGCCCTCCTTCCGACCTCGGCGACCAC +
Preference number: 3 (lower is better)
Translates to: LPGLGSKVSVSS*LRCPPSDLGDH
Trigger: GTGGTCGCCGAGGTCGGAAGGAGGGCACCTCAGGCAAGAGGAGACTGAGACTTTAGAGCCAAGGCCTGGCAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
3UTR TCA 72 bp CAGGCCTTGGCTCTAAAGTCTCAGTCTCCTCTTGCCTaGGGTGCCCTCCTTCCGACCTCGGCGACCACCTGT +
Preference number: 3 (lower is better)
Translates to: QALALKSQSPLA*GALLPTSATTC
Trigger: ACAGGTGGTCGCCGAGGTCGGAAGGAGGGCACCTCAGGCAAGAGGAGACTGAGACTTTAGAGCCAAGGCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
3UTR GCA 72 bp CTTGGCTCTAAAGTCTCAGTCTCCTCTTGCCTGAGGTaGCCTCCTTCCGACCTCGGCGACCACCTGTGGTGC +
Preference number: 3 (lower is better)
Translates to: LGSKVSVSSCLR*PPSDLGDHLWC
Trigger: GCACCACAGGTGGTCGCCGAGGTCGGAAGGAGGGCACCTCAGGCAAGAGGAGACTGAGACTTTAGAGCCAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
3UTR-3UTR CAA 90 bp GCTCAGCACAATATTAAAAATAGATGTGCTGTAGCTGCGAAGTCCCGGGCTCGAGTAGCCTTTGAGGGATaGTTCTGGGGGATGAGGGGG +
Preference number: 3 (lower is better)
Translates to: AQHNIKNRCAVAAKSRARVAFEG*FWGMRG
Trigger: CCCCCTCATCCCCCAGAACAATCCCTCAAAGGCTAC...TCGAGCCCGGGACTTCGCAGCTACAGCACATCTATTTTTAATATTGTGCTGAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
CDS-3UTR GCA 90 bp TGTAGCTGCGAAGTCCCGGGCTCGAGTCCCGGGTCCCGCGGCGAGGGTCGTCGCGCGGCCACCAGCAGCTaGTCCACCGCGGCAGTCACC +
Preference number: 4 (lower is better)
Translates to: CSCEVPGSSPGSRGEGRRAATSS*STAAVT
Trigger: GGTGACTGCCGCGGTGGAGCAGCTGCTGGTGGCCGC...GCGACGACCCTCGCCGCGGGACCCGGGACTCGAGCCCGGGACTTCGCAGCTACA
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
CDS-3UTR TCA 90 bp CGTGCCCCTCTCCTCATCTCAGTCTCGGTGACTCCGCCCCTCCCAGAAGGTATCCGTACACCCCCACGGTaGGGCGATCCTGACGCTGCG +
Preference number: 4 (lower is better)
Translates to: RAPLLISVSVTPPLPEGIRTPPR*GDPDAA
Trigger: CGCAGCGTCAGGATCGCCTCACCGTGGGGGTGTACG...GATACCTTCTGGGAGGGGCGGAGTCACCGAGACTGAGATGAGGAGAGGGGCACG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
CDS-3UTR TCA 90 bp CTGCGAAGTCCCGGGCTCGAGTCCCGGGTCCCGCGGCGAGGGTCGTCGCCCTCCTGGATCAGGGTGAAGTaGATCTGCAGAGCGATATCA +
Preference number: 4 (lower is better)
Translates to: LRSPGLESRVPRRGSSPSWIRVK*ICRAIS
Trigger: TGATATCGCTCTGCAGATTCACTTCACCCTGATCCA...GGAGGGCGACGACCCTCGCCGCGGGACCCGGGACTCGAGCCCGGGACTTCGCAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
CDS-3UTR CCA 90 bp TCGAGTCCCGGGTCCCGCGGCGAGGGTCGTCGCCCTCCGCTGACTTATGCACAGCCACATTCATCAGTTTaGCCGCCTCGTACACCCCCA +
Preference number: 4 (lower is better)
Translates to: SSPGSRGEGRRPPLTYAQPHSSV*PPRTPP
Trigger: TGGGGGTGTACGAGGCGGCCAAACTGATGAATGTGG...CTGTGCATAAGTCAGCGGAGGGCGACGACCCTCGCCGCGGGACCCGGGACTCGA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
CDS-3UTR TCA 90 bp TCGAGTCCCGGGTCCCGCGGCGAGGGTCGTCGCCCTCCGCTGACTTATGCACAGACGACTGGATCAGGGTaGAGTGAATCTGCAGAGCGA +
Preference number: 4 (lower is better)
Translates to: SSPGSRGEGRRPPLTYAQTTGSG*SESAER
Trigger: TCGCTCTGCAGATTCACTTCACCCTGATCCAGTCGT...CTGTGCATAAGTCAGCGGAGGGCGACGACCCTCGCCGCGGGACCCGGGACTCGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
CDS-3UTR TCA 90 bp GGTAGGGTAGCCTTTGAGGGATTGTTCTGGGGGATGAGGGGGCTGTCAAATATGACGGTGAGGCGATCCTaGCGCTGCGCGGCCACCAGC +
Preference number: 4 (lower is better)
Translates to: GRVAFEGLFWGMRGLSNMTVRRS*RCAATS
Trigger: GCTGGTGGCCGCGCAGCGTCAGGATCGCCTCACCGT...CATATTTGACAGCCCCCTCATCCCCCAGAACAATCCCTCAAAGGCTACCCTACC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
CDS-3UTR GCA 90 bp GGACTGCCAGGCCTTGGCTCTAAAGTCTCAGTCTCCTCTTGCCTGAGGTGCCCTGTGACCAGGAGGCAGTaGAGGTCTCGGGCTTCGGTT +
Preference number: 4 (lower is better)
Translates to: GLPGLGSKVSVSSCLRCPVTRRQ*RSRASV
Trigger: AACCGAAGCCCGAGACCTGCACTGCCTCCTGGTCAC...AGGGCACCTCAGGCAAGAGGAGACTGAGACTTTAGAGCCAAGGCCTGGCAGTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
CDS-3UTR CCA 90 bp CGTGCCCCTCTCCTCATCTCAGTCTCGGTGACTCCGCCCCTCCCAGAAGGTATCCCTCTTCTTCGTCTATaGCCAGGAGGCACAAGACCA +
Preference number: 4 (lower is better)
Translates to: RAPLLISVSVTPPLPEGIPLLRL*PGGTRP
Trigger: TGGTCTTGTGCCTCCTGGCCATAGACGAAGAAGAGG...GATACCTTCTGGGAGGGGCGGAGTCACCGAGACTGAGATGAGGAGAGGGGCACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
CDS-3UTR CCA 90 bp AGTCTCCTCTTGCCTGAGGTGCCCTCCTTCCGACCTCGGCGACCACCTGTGGTGTCTCTTCACAGTAACTaGCCACCTCCACCAAGCCTT +
Preference number: 4 (lower is better)
Translates to: SLLLPEVPSFRPRRPPVVSLHSN*PPPPSL
Trigger: AAGGCTTGGTGGAGGTGGCCAGTTACTGTGAAGAGA...CACCACAGGTGGTCGCCGAGGTCGGAAGGAGGGCACCTCAGGCAAGAGGAGACT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
CDS-3UTR CCA 90 bp GGACTGCCAGGCCTTGGCTCTAAAGTCTCAGTCTCCTCTTGCCTGAGGTGCCCTACCTCCACCAAGCCTTaGCTTTTCCAGGAATCTGTA +
Preference number: 4 (lower is better)
Translates to: GLPGLGSKVSVSSCLRCPTSTKP*LFQESV
Trigger: TACAGATTCCTGGAAAAGCCAAGGCTTGGTGGAGGT...AGGGCACCTCAGGCAAGAGGAGACTGAGACTTTAGAGCCAAGGCCTGGCAGTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
CDS GCA 90 bp GTGCCCAATGTCTCCGCCGGCTCCCCCAGGAGCTGCGCCAGCCTCTaGATGCCTGATACCCGGACGATGTCAATGTCATTGTCGCAGCAG +
Preference number: 5 (lower is better)
Translates to: VPNVSAGSPRSCASL*MPDTRTMSMSLSQQ
Trigger: CTGCTGCGACAATGACATTGACATCGTCCGGGTATCAGGCATGCAGAGGCTGGCGCAGCTCCTGGGGGAGCCGGCGGAGACATTGGGCAC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015456.10
ENSMUST00000220246.2
CDS-3UTR CAA 90 bp AGTCTCCTCTTGCCTGAGGTGCCCTCCTTCCGACCTCGGCGACCACCTGTGGTGTCCACATTCATCAGTTaGGCCGCCTCGTACACCCCC +
Preference number: 5 (lower is better)
Translates to: SLLLPEVPSFRPRRPPVVSTFIS*AASYTP
Trigger: GGGGGTGTACGAGGCGGCCAAACTGATGAATGTGGA...CACCACAGGTGGTCGCCGAGGTCGGAAGGAGGGCACCTCAGGCAAGAGGAGACT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
CDS GCA 90 bp AGCGTTCCTCTAGAGAGATATAGGGGACCCATTGGTTATTGCCTCTaGTCTCTTCACAGTAACTGGCCACCTCCACCAAGCCTTGGCTTT +
Preference number: 5 (lower is better)
Translates to: SVPLERYRGPIGYCL*SLHSNWPPPPSLGF
Trigger: AAAGCCAAGGCTTGGTGGAGGTGGCCAGTTACTGTGAAGAGAGCAGAGGCAATAACCAATGGGTCCCCTATATCTCTCTAGAGGAACGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015456.10
ENSMUST00000220246.2
CDS-3UTR CAA 90 bp GCTCAGCACAATATTAAAAATAGATGTGCTGTAGCTGCGAAGTCCCGGGCTCGACACCTCCACCAAGCCTaGGCTTTTCCAGGAATCTGT +
Preference number: 5 (lower is better)
Translates to: AQHNIKNRCAVAAKSRARHLHQA*AFPGIC
Trigger: ACAGATTCCTGGAAAAGCCAAGGCTTGGTGGAGGTG...TCGAGCCCGGGACTTCGCAGCTACAGCACATCTATTTTTAATATTGTGCTGAGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015456.10
CDS GCA 72 bp CCGCCGGCTCCCCCAGGAGCTGCGCCAGCCTCTGCATaGCTGATACCCGGACGATGTCAATGTCATTGTCGC +
Preference number: 6 (lower is better)
Translates to: PPAPPGAAPASA*LIPGRCQCHCR
Trigger: GCGACAATGACATTGACATCGTCCGGGTATCAGGCATGCAGAGGCTGGCGCAGCTCCTGGGGGAGCCGGCGG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000015456.10
ENSMUST00000220246.2
CDS CAA 90 bp ATTGCCTCTGCTCTCTTCACAGTAACTGGCCACCTCCACCAAGCCTaGGCTTTTCCAGGAATCTGTATGACAGTTCGTGACCAGGAGGCA +
Preference number: 6 (lower is better)
Translates to: IASALFTVTGHLHQA*AFPGICMTVRDQEA
Trigger: TGCCTCCTGGTCACGAACTGTCATACAGATTCCTGGAAAAGCCAAGGCTTGGTGGAGGTGGCCAGTTACTGTGAAGAGAGCAGAGGCAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015456.10
ENSMUST00000220246.2
CDS GCA 72 bp CTAGAGAGATATAGGGGACCCATTGGTTATTGCCTCTaGTCTCTTCACAGTAACTGGCCACCTCCACCAAGC +
Preference number: 6 (lower is better)
Translates to: LERYRGPIGYCL*SLHSNWPPPPS
Trigger: GCTTGGTGGAGGTGGCCAGTTACTGTGAAGAGAGCAGAGGCAATAACCAATGGGTCCCCTATATCTCTCTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015456.10
ENSMUST00000220246.2
CDS CAA 72 bp GCTCTCTTCACAGTAACTGGCCACCTCCACCAAGCCTaGGCTTTTCCAGGAATCTGTATGACAGTTCGTGAC +
Preference number: 6 (lower is better)
Translates to: ALFTVTGHLHQA*AFPGICMTVRD
Trigger: GTCACGAACTGTCATACAGATTCCTGGAAAAGCCAAGGCTTGGTGGAGGTGGCCAGTTACTGTGAAGAGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000015456.10
ENSMUST00000220246.2