Pregenerated sensors for GADD45A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036390Ensembl transcript IDs: ENSMUST00000043098.9, ENSMUST00000204282.2, ENSMUST00000204369.2
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GGCTCACCTCTCTCTCCCTCTGCAAAGTCATCTCTGAGCCCTCGTGCAGTTGAAACCTCTCTCTCCCTCTaGAAAGTCATCTCTGAGCCC | + |
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Preference number: 2 (lower is better) Translates to: GSPLSPSAKSSLSPRAVETSLSL*KVISEP Trigger: GGGCTCAGAGATGACTTTGCAGAGGGAGAGAGAGGT...TTCAACTGCACGAGGGCTCAGAGATGACTTTGCAGAGGGAGAGAGAGGTGAGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000043098.9 ENSMUST00000204282.2 ENSMUST00000204369.2 |
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| CDS-3UTR GCA 90 bp | TCTGCAAAGTCATCTCTGAGCCCTCGTGCAGTTGAACTCGGCCCCTTGACATCAGTCACCAGCACACAGTaGAGGTCCGGGGTCTGCGCG | + |
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Preference number: 4 (lower is better) Translates to: SAKSSLSPRAVELGPLTSVTSTQ*RSGVCA Trigger: CGCGCAGACCCCGGACCTGCACTGTGTGCTGGTGAC...TGATGTCAAGGGGCCGAGTTCAACTGCACGAGGGCTCAGAGATGACTTTGCAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043098.9 ENSMUST00000204369.2 |
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| CDS-3UTR GCA 90 bp | GCAAAGTCATCTCTGAGCCCTCGTGCAGTTGAACTCGGCCCCTTGACATCAGTTGTCACCAGCACACAGTaGAGGTCCGGGGTCTGCGCG | + |
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Preference number: 4 (lower is better) Translates to: AKSSLSPRAVELGPLTSVVTSTQ*RSGVCA Trigger: CGCGCAGACCCCGGACCTGCACTGTGTGCTGGTGAC...AACTGATGTCAAGGGGCCGAGTTCAACTGCACGAGGGCTCAGAGATGACTTTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000043098.9 ENSMUST00000204369.2 |
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| CDS-3UTR TCA 90 bp | GGCTCACCTCTCTCTCCCTCTGCAAAGTCATCTCTGAGCCCTCGTGCAGTTGAAGACTCCGAGCCTTGCTaGGCACTTCCTCCAGGGCAT | + |
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Preference number: 4 (lower is better) Translates to: GSPLSPSAKSSLSPRAVEDSEPC*ALPPGH Trigger: ATGCCCTGGAGGAAGTGCTCAGCAAGGCTCGGAGTC...TTCAACTGCACGAGGGCTCAGAGATGACTTTGCAGAGGGAGAGAGAGGTGAGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043098.9 ENSMUST00000204282.2 |
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| CDS-3UTR TCA 90 bp | TCTGCAAAGTCATCTCTGAGCCCTCGTGCAGTTGAACTCGGCCCCTTGACATCAGAATGTGGGTTACGTTaGGCAGCTTGGCAGCCTCGT | + |
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Preference number: 4 (lower is better) Translates to: SAKSSLSPRAVELGPLTSECGLR*AAWQPR Trigger: ACGAGGCTGCCAAGCTGCTCAACGTAACCCACATTC...TGATGTCAAGGGGCCGAGTTCAACTGCACGAGGGCTCAGAGATGACTTTGCAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204282.2 |
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| CDS-3UTR GCA 90 bp | TCTCCCTCTGCAAAGTCATCTCTGAGCCCTCGTGCAGTTGAACTCGGCCCCTTGATCCTTTCGGTCTTCTaGTCTGCAGCCGAGAATTCC | + |
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Preference number: 4 (lower is better) Translates to: SPSAKSSLSPRAVELGPLILSVF*SAAENS Trigger: GGAATTCTCGGCTGCAGAGCAGAAGACCGAAAGGAT...CAAGGGGCCGAGTTCAACTGCACGAGGGCTCAGAGATGACTTTGCAGAGGGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043098.9 ENSMUST00000204282.2 |
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| CDS-3UTR GCA 90 bp | TCACCTCTCTCTCCCTCTGCAAAGTCATCTCTGAGCCCTCGTGCAGTTGAACTCAGGGTGAAATGGATCTaGAGAGCCACATCCCGGTCG | + |
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Preference number: 4 (lower is better) Translates to: SPLSPSAKSSLSPRAVELRVKWI*RATSRS Trigger: CGACCGGGATGTGGCTCTGCAGATCCATTTCACCCT...GAGTTCAACTGCACGAGGGCTCAGAGATGACTTTGCAGAGGGAGAGAGAGGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043098.9 ENSMUST00000204369.2 |
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| CDS-3UTR GCA 90 bp | GGCTCACCTCTCTCTCCCTCTGCAAAGTCATCTCTGAGCCCTCGTGCAGTTGAATTCGGTCTTCTGCTCTaGAGCCGAGAATTCCTCCAA | + |
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Preference number: 4 (lower is better) Translates to: GSPLSPSAKSSLSPRAVEFGLLL*SREFLQ Trigger: TTGGAGGAATTCTCGGCTGCAGAGCAGAAGACCGAA...TTCAACTGCACGAGGGCTCAGAGATGACTTTGCAGAGGGAGAGAGAGGTGAGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000043098.9 ENSMUST00000204282.2 ENSMUST00000204369.2 |
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| CDS-3UTR CCA 90 bp | GCAAAGTCATCTCTGAGCCCTCGTGCAGTTGAACTCGGCCCCTTGACATCAGTTCGGATGAGGGTGAAATaGATCTGCAGAGCCACATCC | + |
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Preference number: 4 (lower is better) Translates to: AKSSLSPRAVELGPLTSVRMRVK*ICRATS Trigger: GGATGTGGCTCTGCAGATCCATTTCACCCTCATCCG...AACTGATGTCAAGGGGCCGAGTTCAACTGCACGAGGGCTCAGAGATGACTTTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043098.9 ENSMUST00000204369.2 |
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| CDS-3UTR CCA 90 bp | TCACCTCTCTCTCCCTCTGCAAAGTCATCTCTGAGCCCTCGTGCAGTTGAACTCCGGATGAGGGTGAAATaGATCTGCAGAGCCACATCC | + |
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Preference number: 4 (lower is better) Translates to: SPLSPSAKSSLSPRAVELRMRVK*ICRATS Trigger: GGATGTGGCTCTGCAGATCCATTTCACCCTCATCCG...GAGTTCAACTGCACGAGGGCTCAGAGATGACTTTGCAGAGGGAGAGAGAGGTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043098.9 ENSMUST00000204369.2 |
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| CDS-3UTR TCA 90 bp | ATTAATCACGGGCACCCACTGATCCATGTAGCGACTTTCCCGGCAAAAACAAATGACTCCGAGCCTTGCTaGGCACTTCCTCCAGGGCAT | + |
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Preference number: 4 (lower is better) Translates to: INHGHPLIHVATFPAKTNDSEPC*ALPPGH Trigger: ATGCCCTGGAGGAAGTGCTCAGCAAGGCTCGGAGTC...ATTTGTTTTTGCCGGGAAAGTCGCTACATGGATCAGTGGGTGCCCGTGATTAAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000204282.2 |
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| CDS-3UTR GCA 90 bp | TCTGCAAAGTCATCTCTGAGCCCTCGTGCAGTTGAACTCGGCCCCTTGACATCATTCGGTCTTCTGCTCTaGAGCCGAGAATTCCTCCAA | + |
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Preference number: 4 (lower is better) Translates to: SAKSSLSPRAVELGPLTSFGLLL*SREFLQ Trigger: TTGGAGGAATTCTCGGCTGCAGAGCAGAAGACCGAA...TGATGTCAAGGGGCCGAGTTCAACTGCACGAGGGCTCAGAGATGACTTTGCAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000043098.9 ENSMUST00000204282.2 ENSMUST00000204369.2 |
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| CDS-3UTR GCA 90 bp | TCTGCAAAGTCATCTCTGAGCCCTCGTGCAGTTGAACTCGGCCCCTTGACATCAATCCTTTCGGTCTTCTaGTCTGCAGCCGAGAATTCC | + |
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Preference number: 4 (lower is better) Translates to: SAKSSLSPRAVELGPLTSILSVF*SAAENS Trigger: GGAATTCTCGGCTGCAGAGCAGAAGACCGAAAGGAT...TGATGTCAAGGGGCCGAGTTCAACTGCACGAGGGCTCAGAGATGACTTTGCAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043098.9 ENSMUST00000204282.2 |
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| CDS-3UTR GCA 90 bp | GCAAAGTCATCTCTGAGCCCTCGTGCAGTTGAACTCGGCCCCTTGACATCAGTTTCTCTTTCGGTCTTCTaGTCTGCAGCCGAGAATTCC | + |
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Preference number: 4 (lower is better) Translates to: AKSSLSPRAVELGPLTSVSLSVF*SAAENS Trigger: GGAATTCTCGGCTGCAGAGCAGAAGACCGAAAGAGA...AACTGATGTCAAGGGGCCGAGTTCAACTGCACGAGGGCTCAGAGATGACTTTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204369.2 |
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| CDS-3UTR GCA 90 bp | ATTAATCACGGGCACCCACTGATCCATGTAGCGACTTTCCCGGCAAAAACAAATTTCGGTCTTCTGCTCTaGAGCCGAGAATTCCTCCAA | + |
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Preference number: 4 (lower is better) Translates to: INHGHPLIHVATFPAKTNFGLLL*SREFLQ Trigger: TTGGAGGAATTCTCGGCTGCAGAGCAGAAGACCGAA...ATTTGTTTTTGCCGGGAAAGTCGCTACATGGATCAGTGGGTGCCCGTGATTAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000204282.2 |
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| CDS GCA 90 bp | GATGAATGTGGGTTCGTCACCAGCACACAGTGCAGGTCCGGGGTCTaGGCGGCGCCCCCGCTCTCCGCCGGGCCCGCGTCGTTCTCCAGT | + |
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Preference number: 5 (lower is better) Translates to: DECGFVTSTQCRSGV*AAPPLSAGPASFSS Trigger: ACTGGAGAACGACGCGGGCCCGGCGGAGAGCGGGGGCGCCGCGCAGACCCCGGACCTGCACTGTGTGCTGGTGACGAACCCACATTCATC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043098.9 ENSMUST00000204369.2 |
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| CDS-3UTR CAA 90 bp | GGCTCACCTCTCTCTCCCTCTGCAAAGTCATCTCTGAGCCCTCGTGCAGTTGAAGCTAGCCGACCCGGGTaGCTGACCCGCAGGATGTTG | + |
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Preference number: 5 (lower is better) Translates to: GSPLSPSAKSSLSPRAVEASRPG*LTRRML Trigger: CAACATCCTGCGGGTCAGCAACCCGGGTCGGCTAGC...TTCAACTGCACGAGGGCTCAGAGATGACTTTGCAGAGGGAGAGAGAGGTGAGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043098.9 ENSMUST00000204369.2 |
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| CDS-3UTR CAA 90 bp | GCAAAGTCATCTCTGAGCCCTCGTGCAGTTGAACTCGGCCCCTTGACATCAGTTGCTAGCCGACCCGGGTaGCTGACCCGCAGGATGTTG | + |
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Preference number: 5 (lower is better) Translates to: AKSSLSPRAVELGPLTSVASRPG*LTRRML Trigger: CAACATCCTGCGGGTCAGCAACCCGGGTCGGCTAGC...AACTGATGTCAAGGGGCCGAGTTCAACTGCACGAGGGCTCAGAGATGACTTTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000043098.9 ENSMUST00000204369.2 |
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| CDS-3UTR CAA 90 bp | TCACCTCTCTCTCCCTCTGCAAAGTCATCTCTGAGCCCTCGTGCAGTTGAACTCTCTACGTTGAGCAGCTaGGCAGCCTCGTACACGCCG | + |
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Preference number: 5 (lower is better) Translates to: SPLSPSAKSSLSPRAVELSTLSS*AASYTP Trigger: CGGCGTGTACGAGGCTGCCAAGCTGCTCAACGTAGA...GAGTTCAACTGCACGAGGGCTCAGAGATGACTTTGCAGAGGGAGAGAGAGGTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043098.9 |
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| CDS-3UTR CAA 90 bp | TCTGCAAAGTCATCTCTGAGCCCTCGTGCAGTTGAACTCGGCCCCTTGACATCAGTTACGTTGAGCAGCTaGGCAGCCTCGTACACGCCG | + |
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Preference number: 5 (lower is better) Translates to: SAKSSLSPRAVELGPLTSVTLSS*AASYTP Trigger: CGGCGTGTACGAGGCTGCCAAGCTGCTCAACGTAAC...TGATGTCAAGGGGCCGAGTTCAACTGCACGAGGGCTCAGAGATGACTTTGCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204282.2 |
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| CDS-3UTR CAA 90 bp | TCTGCAAAGTCATCTCTGAGCCCTCGTGCAGTTGAACTCGGCCCCTTGACATCATTATCGGGGTCTACGTaGAGCAGCTTGGCAGCCTCG | + |
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Preference number: 5 (lower is better) Translates to: SAKSSLSPRAVELGPLTSLSGST*SSLAAS Trigger: CGAGGCTGCCAAGCTGCTCAACGTAGACCCCGATAA...TGATGTCAAGGGGCCGAGTTCAACTGCACGAGGGCTCAGAGATGACTTTGCAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043098.9 |
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| CDS GCA 72 bp | CATTGTGATGAATGTGGGTTCGTCACCAGCACACAGTaGAGGTCCGGGGTCTGCGCGGCGCCCCCGCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: HCDECGFVTSTQ*RSGVCAAPPLS Trigger: GGAGAGCGGGGGCGCCGCGCAGACCCCGGACCTGCACTGTGTGCTGGTGACGAACCCACATTCATCACAATG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000043098.9 ENSMUST00000204369.2 |
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| CDS CAA 72 bp | CACAGTACCACGTTATCGGGGTCTACGTTGAGCAGCTaGGCAGCCTCGTACACGCCGACCGTAATGGTGCGC | + |
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Preference number: 6 (lower is better) Translates to: HSTTLSGSTLSS*AASYTPTVMVR Trigger: GCGCACCATTACGGTCGGCGTGTACGAGGCTGCCAAGCTGCTCAACGTAGACCCCGATAACGTGGTACTGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043098.9 |
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