Pregenerated sensors for GABRR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028280Ensembl transcript IDs: ENSMUST00000029947.6
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AGGTGCAGAGACCCTGAAGCCTGGCCTTTCATCAGAAGGGGTTTATaGGCCTGTGGGCTCAATGCAAACGCATTTTATTTAGGTACTTCC | + |
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Preference number: 1 (lower is better) Translates to: RCRDPEAWPFIRRGL*ACGLNANAFYLGTS Trigger: GGAAGTACCTAAATAAAATGCGTTTGCATTGAGCCCACAGGCCCATAAACCCCTTCTGATGAAAGGCCAGGCTTCAGGGTCTCTGCACCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| 3UTR GCA 90 bp | AGCCTGGCCTTTCATCAGAAGGGGTTTATGGGCCTGTGGGCTCAATaGAAACGCATTTTATTTAGGTACTTCCCAGAGCTACCTAGTCTA | + |
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Preference number: 1 (lower is better) Translates to: SLAFHQKGFMGLWAQ*KRILFRYFPELPSL Trigger: TAGACTAGGTAGCTCTGGGAAGTACCTAAATAAAATGCGTTTGCATTGAGCCCACAGGCCCATAAACCCCTTCTGATGAAAGGCCAGGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| 3UTR-3UTR TCA 90 bp | GAACACAGTCCACTGATGAAGAAACCCCTCAATGTGAACAGAGTCAGGGGCTCCCTGAAAAGGGGACAGTaGAAACCCAGTGGGATGGCT | + |
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Preference number: 2 (lower is better) Translates to: EHSPLMKKPLNVNRVRGSLKRGQ*KPSGMA Trigger: AGCCATCCCACTGGGTTTTCACTGTCCCCTTTTCAG...GGAGCCCCTGACTCTGTTCACATTGAGGGGTTTCTTCATCAGTGGACTGTGTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| 3UTR-3UTR TCA 90 bp | GAGACCCTGAAGCCTGGCCTTTCATCAGAAGGGGTTTATGGGCCTGTGGGCTCAGCAGCTTTGAATAGCTaGAAAGGGGACAGTGAAAAC | + |
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Preference number: 2 (lower is better) Translates to: ETLKPGLSSEGVYGPVGSAALNS*KGDSEN Trigger: GTTTTCACTGTCCCCTTTTCAGCTATTCAAAGCTGC...TGAGCCCACAGGCCCATAAACCCCTTCTGATGAAAGGCCAGGCTTCAGGGTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| 3UTR-3UTR GCA 90 bp | AAAGAACACAGTCCACTGATGAAGAAACCCCTCAATGTGAACAGAGTCAGGGGCTCCATATGTCCTCTGTaGTTTTCCTGGATCTGGGAG | + |
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Preference number: 2 (lower is better) Translates to: KEHSPLMKKPLNVNRVRGSICPL*FSWIWE Trigger: CTCCCAGATCCAGGAAAAGCACAGAGGACATATGGA...GCCCCTGACTCTGTTCACATTGAGGGGTTTCTTCATCAGTGGACTGTGTTCTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| 3UTR-3UTR CCA 90 bp | CTCCAGCTTAGTCACCTCCACAAAACAGACGAAATGATACATGTATCCATATCTTGCTTTTCCTGGATCTaGGAGCAGCTAATGTCAGGT | + |
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Preference number: 2 (lower is better) Translates to: LQLSHLHKTDEMIHVSISCFSWI*EQLMSG Trigger: ACCTGACATTAGCTGCTCCCAGATCCAGGAAAAGCA...AGATATGGATACATGTATCATTTCGTCTGTTTTGTGGAGGTGACTAAGCTGGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| 3UTR-3UTR TCA 90 bp | CTCCAGCTTAGTCACCTCCACAAAACAGACGAAATGATACATGTATCCATATCTTTCTGTAGGACATGCTaGGACATACACAATTACAGG | + |
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Preference number: 2 (lower is better) Translates to: LQLSHLHKTDEMIHVSISFCRTC*DIHNYR Trigger: CCTGTAATTGTGTATGTCTCAGCATGTCCTACAGAA...AGATATGGATACATGTATCATTTCGTCTGTTTTGTGGAGGTGACTAAGCTGGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| 3UTR CAA 90 bp | TGTCAGGTACTATCATGGCAACTTCCTGCAACACCTAGTATAATGTaGTGTAGAGAACTGATATTTAATAAGTGCAAACAGAGGTGTCTT | + |
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Preference number: 2 (lower is better) Translates to: CQVLSWQLPATPSIM*CRELIFNKCKQRCL Trigger: AAGACACCTCTGTTTGCACTTATTAAATATCAGTTCTCTACACAACATTATACTAGGTGTTGCAGGAAGTTGCCATGATAGTACCTGACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| 3UTR CCA 72 bp | ACCGGGGATGCGAGCAGGTGCAGAGACCCTGAAGCCTaGCCTTTCATCAGAAGGGGTTTATGGGCCTGTGGG | + |
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Preference number: 3 (lower is better) Translates to: TGDASRCRDPEA*PFIRRGLWACG Trigger: CCCACAGGCCCATAAACCCCTTCTGATGAAAGGCCAGGCTTCAGGGTCTCTGCACCTGCTCGCATCCCCGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| 3UTR TCA 72 bp | AAAGCACCTGCTCCGTGGTGGAGAGGCAGGCAACAGTaGCTAGAGGACAGGGAAAGGAAGAGAGTTCTCCAG | + |
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Preference number: 3 (lower is better) Translates to: KAPAPWWRGRQQ*LEDRERKRVLQ Trigger: CTGGAGAACTCTCTTCCTTTCCCTGTCCTCTAGTCACTGTTGCCTGCCTCTCCACCACGGAGCAGGTGCTTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| 3UTR GCA 72 bp | CACTGCCTTTCATTAAGTACCGGGGATGCGAGCAGGTaGAGAGACCCTGAAGCCTGGCCTTTCATCAGAAGG | + |
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Preference number: 3 (lower is better) Translates to: HCLSLSTGDASR*RDPEAWPFIRR Trigger: CCTTCTGATGAAAGGCCAGGCTTCAGGGTCTCTGCACCTGCTCGCATCCCCGGTACTTAATGAAAGGCAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| 3UTR CCA 72 bp | GACCCTGAAGCCTGGCCTTTCATCAGAAGGGGTTTATaGGCCTGTGGGCTCAATGCAAACGCATTTTATTTA | + |
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Preference number: 3 (lower is better) Translates to: DPEAWPFIRRGL*ACGLNANAFYL Trigger: TAAATAAAATGCGTTTGCATTGAGCCCACAGGCCCATAAACCCCTTCTGATGAAAGGCCAGGCTTCAGGGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| 3UTR CCA 72 bp | GACATGTCCATATGTCCTCTGTGCTTTTCCTGGATCTaGGAGCAGCTAATGTCAGGTACTATCATGGCAACT | + |
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Preference number: 3 (lower is better) Translates to: DMSICPLCFSWI*EQLMSGTIMAT Trigger: AGTTGCCATGATAGTACCTGACATTAGCTGCTCCCAGATCCAGGAAAAGCACAGAGGACATATGGACATGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| 3UTR CCA 72 bp | AGCCTGGCCTTTCATCAGAAGGGGTTTATGGGCCTGTaGGCTCAATGCAAACGCATTTTATTTAGGTACTTC | + |
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Preference number: 3 (lower is better) Translates to: SLAFHQKGFMGL*AQCKRILFRYF Trigger: GAAGTACCTAAATAAAATGCGTTTGCATTGAGCCCACAGGCCCATAAACCCCTTCTGATGAAAGGCCAGGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| 3UTR GCA 72 bp | TTTCATCAGAAGGGGTTTATGGGCCTGTGGGCTCAATaGAAACGCATTTTATTTAGGTACTTCCCAGAGCTA | + |
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Preference number: 3 (lower is better) Translates to: FHQKGFMGLWAQ*KRILFRYFPEL Trigger: TAGCTCTGGGAAGTACCTAAATAAAATGCGTTTGCATTGAGCCCACAGGCCCATAAACCCCTTCTGATGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR CCA 90 bp | GAACACAGTCCACTGATGAAGAAACCCCTCAATGTGAACAGAGTCAGGGGCTCCATCACCCCTCGAGGCTaGGGCAGCCCACAGGTGCAG | + |
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Preference number: 4 (lower is better) Translates to: EHSPLMKKPLNVNRVRGSITPRG*GSPQVQ Trigger: CTGCACCTGTGGGCTGCCCCAGCCTCGAGGGGTGAT...GGAGCCCCTGACTCTGTTCACATTGAGGGGTTTCTTCATCAGTGGACTGTGTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR GCA 90 bp | GAGACCCTGAAGCCTGGCCTTTCATCAGAAGGGGTTTATGGGCCTGTGGGCTCACTCCATCACTGTAGCTaGTGTCCAGCATCACCCCTC | + |
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Preference number: 4 (lower is better) Translates to: ETLKPGLSSEGVYGPVGSLHHCS*CPASPL Trigger: GAGGGGTGATGCTGGACAGCAGCTACAGTGATGGAG...TGAGCCCACAGGCCCATAAACCCCTTCTGATGAAAGGCCAGGCTTCAGGGTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR TCA 90 bp | GAGACCCTGAAGCCTGGCCTTTCATCAGAAGGGGTTTATGGGCCTGTGGGCTCAAACCAGGCCTCATGCTaGAATCATGGTCGTCTATCC | + |
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Preference number: 4 (lower is better) Translates to: ETLKPGLSSEGVYGPVGSNQASC*NHGRLS Trigger: GGATAGACGACCATGATTTCAGCATGAGGCCTGGTT...TGAGCCCACAGGCCCATAAACCCCTTCTGATGAAAGGCCAGGCTTCAGGGTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR CCA 90 bp | AAAGAACACAGTCCACTGATGAAGAAACCCCTCAATGTGAACAGAGTCAGGGGCCTGGCCCTTCCTCTGTaGAGAGCCCCTCTCAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: KEHSPLMKKPLNVNRVRGLALPL*RAPLRG Trigger: GCCTCTGAGAGGGGCTCTCCACAGAGGAAGGGCCAG...GCCCCTGACTCTGTTCACATTGAGGGGTTTCTTCATCAGTGGACTGTGTTCTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR GCA 90 bp | AAAGAACACAGTCCACTGATGAAGAAACCCCTCAATGTGAACAGAGTCAGGGGCTCTCTTCCTGGCCAGTaGGCTGTGCTCTCAGCAGCC | + |
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Preference number: 4 (lower is better) Translates to: KEHSPLMKKPLNVNRVRGSLPGQ*AVLSAA Trigger: GGCTGCTGAGAGCACAGCGCACTGGCCAGGAAGAGA...GCCCCTGACTCTGTTCACATTGAGGGGTTTCTTCATCAGTGGACTGTGTTCTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR TCA 90 bp | GAACACAGTCCACTGATGAAGAAACCCCTCAATGTGAACAGAGTCAGGGGCTCCTTCCTAGATGGCTCATaGACTTCTCTTCCTGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: EHSPLMKKPLNVNRVRGSFLDGS*TSLPGQ Trigger: CTGGCCAGGAAGAGAAGTTCATGAGCCATCTAGGAA...GGAGCCCCTGACTCTGTTCACATTGAGGGGTTTCTTCATCAGTGGACTGTGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR TCA 90 bp | AAAGAACACAGTCCACTGATGAAGAAACCCCTCAATGTGAACAGAGTCAGGGGCGCTGCTCAGACTTGGTaGGAGGAGACTTGGTTATGT | + |
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Preference number: 4 (lower is better) Translates to: KEHSPLMKKPLNVNRVRGAAQTW*EETWLC Trigger: ACATAACCAAGTCTCCTCTCACCAAGTCTGAGCAGC...GCCCCTGACTCTGTTCACATTGAGGGGTTTCTTCATCAGTGGACTGTGTTCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR TCA 90 bp | ATGGCTTTAAGCCCTAATTTTCATTTCACAGCAACTTCTGTAGGACATGCTGAGGCTGGACGCGCAGCATaGCGTTGTCTGTGGTGGTGT | + |
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Preference number: 4 (lower is better) Translates to: MALSPNFHFTATSVGHAEAGRAA*RCLWWC Trigger: ACACCACCACAGACAACGTCATGCTGCGCGTCCAGC...CTCAGCATGTCCTACAGAAGTTGCTGTGAAATGAAAATTAGGGCTTAAAGCCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR GCA 90 bp | CTCCAGCTTAGTCACCTCCACAAAACAGACGAAATGATACATGTATCCATATCTGGCTGTAGAGCACTTTaGCGTCTGGCTGGACGCGCA | + |
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Preference number: 4 (lower is better) Translates to: LQLSHLHKTDEMIHVSISGCRAL*RLAGRA Trigger: TGCGCGTCCAGCCAGACGGCAAAGTGCTCTACAGCC...AGATATGGATACATGTATCATTTCGTCTGTTTTGTGGAGGTGACTAAGCTGGAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR TCA 90 bp | ATGGCTTTAAGCCCTAATTTTCATTTCACAGCAACTTCTGTAGGACATGCTGAGCCTCGTCTCTGTCTCTaGGGTCTGCTGCCTTTCCTA | + |
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Preference number: 4 (lower is better) Translates to: MALSPNFHFTATSVGHAEPRLCL*GLLPFL Trigger: TAGGAAAGGCAGCAGACCTCAGAGACAGAGACGAGG...CTCAGCATGTCCTACAGAAGTTGCTGTGAAATGAAAATTAGGGCTTAAAGCCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR TCA 90 bp | AAAGAACACAGTCCACTGATGAAGAAACCCCTCAATGTGAACAGAGTCAGGGGCTATTTATCAATGGCGTaGGTGTTGATCCTCATGCTC | + |
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Preference number: 4 (lower is better) Translates to: KEHSPLMKKPLNVNRVRGYLSMA*VLILML Trigger: GAGCATGAGGATCAACACTCACGCCATTGATAAATA...GCCCCTGACTCTGTTCACATTGAGGGGTTTCTTCATCAGTGGACTGTGTTCTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR GCA 90 bp | CTCCAGCTTAGTCACCTCCACAAAACAGACGAAATGATACATGTATCCATATCTTCATGCTCACATAGCTaGCTCTCTGGCCCTTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: LQLSHLHKTDEMIHVSISSCSHS*LSGPSS Trigger: AGAGGAAGGGCCAGAGAGGCAGCTATGTGAGCATGA...AGATATGGATACATGTATCATTTCGTCTGTTTTGTGGAGGTGACTAAGCTGGAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR CCA 90 bp | TCTAAAGAACACAGTCCACTGATGAAGAAACCCCTCAATGTGAACAGAGTCAGGGCTGCCTTTCCTAGATaGCTCATGAACTTCTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: SKEHSPLMKKPLNVNRVRAAFPR*LMNFSS Trigger: GGAAGAGAAGTTCATGAGCCATCTAGGAAAGGCAGC...CCTGACTCTGTTCACATTGAGGGGTTTCTTCATCAGTGGACTGTGTTCTTTAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR TCA 90 bp | TTAAGCCCTAATTTTCATTTCACAGCAACTTCTGTAGGACATGCTGAGACATACAGATGTCCACAGCTTTaGTGTAGGACACTCGGGGCA | + |
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Preference number: 4 (lower is better) Translates to: LSPNFHFTATSVGHAETYRCPQL*CRTLGA Trigger: TGCCCCGAGTGTCCTACATCAAAGCTGTGGACATCT...GTATGTCTCAGCATGTCCTACAGAAGTTGCTGTGAAATGAAAATTAGGGCTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR CCA 90 bp | TTAAGCCCTAATTTTCATTTCACAGCAACTTCTGTAGGACATGCTGAGACATACTCTGTGGTGGTGTCGTaGATGAAGGAGCGTTTGGAG | + |
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Preference number: 4 (lower is better) Translates to: LSPNFHFTATSVGHAETYSVVVS*MKERLE Trigger: CTCCAAACGCTCCTTCATCCACGACACCACCACAGA...GTATGTCTCAGCATGTCCTACAGAAGTTGCTGTGAAATGAAAATTAGGGCTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR TCA 90 bp | TTAAGCCCTAATTTTCATTTCACAGCAACTTCTGTAGGACATGCTGAGACATACCAATGGCGTGAGTGTTaGTCCTCATGCTCACATAGC | + |
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Preference number: 4 (lower is better) Translates to: LSPNFHFTATSVGHAETYQWREC*SSCSHS Trigger: GCTATGTGAGCATGAGGATCAACACTCACGCCATTG...GTATGTCTCAGCATGTCCTACAGAAGTTGCTGTGAAATGAAAATTAGGGCTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR CCA 90 bp | CTCCAGCTTAGTCACCTCCACAAAACAGACGAAATGATACATGTATCCATATCTCTCATGCTGAAATCATaGTCGTCTATCCTCAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: LQLSHLHKTDEMIHVSISLMLKS*SSILSS Trigger: GCTGCTGAGGATAGACGACCATGATTTCAGCATGAG...AGATATGGATACATGTATCATTTCGTCTGTTTTGTGGAGGTGACTAAGCTGGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR TCA 90 bp | ATGGCTTTAAGCCCTAATTTTCATTTCACAGCAACTTCTGTAGGACATGCTGAGTGTGGAATTCTTGAATaGGGAACTGAGAGAGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: MALSPNFHFTATSVGHAECGILE*GTERGR Trigger: TCTCCCTCTCTCAGTTCCTCATTCAAGAATTCCACA...CTCAGCATGTCCTACAGAAGTTGCTGTGAAATGAAAATTAGGGCTTAAAGCCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR TCA 90 bp | TCTAAAGAACACAGTCCACTGATGAAGAAACCCCTCAATGTGAACAGAGTCAGGTGGGAAAATGATCCTTaGGTATTTATCAATGGCGTG | + |
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Preference number: 4 (lower is better) Translates to: SKEHSPLMKKPLNVNRVRWENDP*VFINGV Trigger: CACGCCATTGATAAATACTCAAGGATCATTTTCCCA...CCTGACTCTGTTCACATTGAGGGGTTTCTTCATCAGTGGACTGTGTTCTTTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR GCA 90 bp | TTAAGCCCTAATTTTCATTTCACAGCAACTTCTGTAGGACATGCTGAGACATACAAGGAGCGTTTGGAGTaGACAAAGAACATGTCGGGA | + |
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Preference number: 4 (lower is better) Translates to: LSPNFHFTATSVGHAETYKERLE*TKNMSG Trigger: TCCCGACATGTTCTTTGTGCACTCCAAACGCTCCTT...GTATGTCTCAGCATGTCCTACAGAAGTTGCTGTGAAATGAAAATTAGGGCTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR CCA 90 bp | TCTAAAGAACACAGTCCACTGATGAAGAAACCCCTCAATGTGAACAGAGTCAGGAGAAGGCTAGTTTTGTaGTGGTGTGGAATTCTTGAA | + |
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Preference number: 4 (lower is better) Translates to: SKEHSPLMKKPLNVNRVRRRLVL*WCGILE Trigger: TTCAAGAATTCCACACCACCACAAAACTAGCCTTCT...CCTGACTCTGTTCACATTGAGGGGTTTCTTCATCAGTGGACTGTGTTCTTTAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR TCA 90 bp | TTAAGCCCTAATTTTCATTTCACAGCAACTTCTGTAGGACATGCTGAGACATACAAGCGGCTGGGAAAATaGTCCTTGAGTATTTATCAA | + |
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Preference number: 4 (lower is better) Translates to: LSPNFHFTATSVGHAETYKRLGK*SLSIYQ Trigger: TTGATAAATACTCAAGGATCATTTTCCCAGCCGCTT...GTATGTCTCAGCATGTCCTACAGAAGTTGCTGTGAAATGAAAATTAGGGCTTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| 3UTR CAA 72 bp | CTATCATGGCAACTTCCTGCAACACCTAGTATAATGTaGTGTAGAGAACTGATATTTAATAAGTGCAAACAG | + |
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Preference number: 4 (lower is better) Translates to: LSWQLPATPSIM*CRELIFNKCKQ Trigger: CTGTTTGCACTTATTAAATATCAGTTCTCTACACAACATTATACTAGGTGTTGCAGGAAGTTGCCATGATAG 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS GCA 90 bp | CAGGCATGTAGCCGCCCAGGTCGTTCACCTCTCCATCACTGTAGCTaGTGTCCAGCATCACCCCTCGAGGCTGGGGCAGCCCACAGGTGC | + |
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Preference number: 5 (lower is better) Translates to: QACSRPGRSPLHHCS*CPASPLEAGAAHRC Trigger: GCACCTGTGGGCTGCCCCAGCCTCGAGGGGTGATGCTGGACAGCAGCTACAGTGATGGAGAGGTGAACGACCTGGGCGGCTACATGCCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS GCA 90 bp | AGCTGCTGTCCAGCATCACCCCTCGAGGCTGGGGCAGCCCACAGGTaGAGGAGATCTTCTCCCGAAGCTTCCGTTCCTTCCGCTCCTGCA | + |
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Preference number: 5 (lower is better) Translates to: SCCPASPLEAGAAHR*RRSSPEASVPSAPA Trigger: TGCAGGAGCGGAAGGAACGGAAGCTTCGGGAGAAGATCTCCTGCACCTGTGGGCTGCCCCAGCCTCGAGGGGTGATGCTGGACAGCAGCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS GCA 90 bp | GCTTCGTCTCAGGATTGGGCTGCCTTGCTTGTGGGCATCGTCGTGTaGTCCTCGTCTCTGTCTCTGAGGTCTGCTGCCTTTCCTAGATGG | + |
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Preference number: 5 (lower is better) Translates to: ASSQDWAALLVGIVV*SSSLSLRSAAFPRW Trigger: CCATCTAGGAAAGGCAGCAGACCTCAGAGACAGAGACGAGGAGCACACGACGATGCCCACAAGCAAGGCAGCCCAATCCTGAGACGAAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS CCA 90 bp | GTGTGCTCCTCGTCTCTGTCTCTGAGGTCTGCTGCCTTTCCTAGATaGCTCATGAACTTCTCTTCCTGGCCAGTGCGCTGTGCTCTCAGC | + |
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Preference number: 5 (lower is better) Translates to: VCSSSLSLRSAAFPR*LMNFSSWPVRCALS Trigger: GCTGAGAGCACAGCGCACTGGCCAGGAAGAGAAGTTCATGAGCCATCTAGGAAAGGCAGCAGACCTCAGAGACAGAGACGAGGAGCACAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR CAA 90 bp | CTGAAGCCTGGCCTTTCATCAGAAGGGGTTTATGGGCCTGTGGGCTCAATGCAACAGGATTGGGCTGCCTaGCTTGTGGGCATCGTCGTG | + |
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Preference number: 5 (lower is better) Translates to: LKPGLSSEGVYGPVGSMQQDWAA*LVGIVV Trigger: CACGACGATGCCCACAAGCAAGGCAGCCCAATCCTG...TTGCATTGAGCCCACAGGCCCATAAACCCCTTCTGATGAAAGGCCAGGCTTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR CAA 90 bp | GAGACCCTGAAGCCTGGCCTTTCATCAGAAGGGGTTTATGGGCCTGTGGGCTCATGGATGAAGGAGCGTTaGGAGTGCACAAAGAACATG | + |
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Preference number: 5 (lower is better) Translates to: ETLKPGLSSEGVYGPVGSWMKER*ECTKNM Trigger: CATGTTCTTTGTGCACTCCAAACGCTCCTTCATCCA...TGAGCCCACAGGCCCATAAACCCCTTCTGATGAAAGGCCAGGCTTCAGGGTCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR CAA 90 bp | GAACACAGTCCACTGATGAAGAAACCCCTCAATGTGAACAGAGTCAGGGGCTCCGTCATGCTGAGGTTGTaGGAGCTGGGGAAAGACAGT | + |
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Preference number: 5 (lower is better) Translates to: EHSPLMKKPLNVNRVRGSVMLRL*ELGKDS Trigger: ACTGTCTTTCCCCAGCTCCAACAACCTCAGCATGAC...GGAGCCCCTGACTCTGTTCACATTGAGGGGTTTCTTCATCAGTGGACTGTGTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS GCA 90 bp | AAACCAGGCCTCATGCTGAAATCATGGTCGTCTATCCTCAGCAGCTaGTCAGACTTGGTGAGAGGAGACTTGGTTATGTCAGAGCTTCGT | + |
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Preference number: 5 (lower is better) Translates to: KPGLMLKSWSSILSS*SDLVRGDLVMSELR Trigger: ACGAAGCTCTGACATAACCAAGTCTCCTCTCACCAAGTCTGAGCAGCTGCTGAGGATAGACGACCATGATTTCAGCATGAGGCCTGGTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR CAA 90 bp | TTAAGCCCTAATTTTCATTTCACAGCAACTTCTGTAGGACATGCTGAGACATACAGCAGCTGCTCAGACTaGGTGAGAGGAGACTTGGTT | + |
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Preference number: 5 (lower is better) Translates to: LSPNFHFTATSVGHAETYSSCSD*VRGDLV Trigger: AACCAAGTCTCCTCTCACCAAGTCTGAGCAGCTGCT...GTATGTCTCAGCATGTCCTACAGAAGTTGCTGTGAAATGAAAATTAGGGCTTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS-3UTR CAA 90 bp | TCTAAAGAACACAGTCCACTGATGAAGAAACCCCTCAATGTGAACAGAGTCAGGTGTAGAAGGCTAGTTTaGTGGTGGTGTGGAATTCTT | + |
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Preference number: 5 (lower is better) Translates to: SKEHSPLMKKPLNVNRVRCRRLV*WWCGIL Trigger: AAGAATTCCACACCACCACAAAACTAGCCTTCTACA...CCTGACTCTGTTCACATTGAGGGGTTTCTTCATCAGTGGACTGTGTTCTTTAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS GCA 72 bp | AGCCGCCCAGGTCGTTCACCTCTCCATCACTGTAGCTaGTGTCCAGCATCACCCCTCGAGGCTGGGGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: SRPGRSPLHHCS*CPASPLEAGAA Trigger: GGCTGCCCCAGCCTCGAGGGGTGATGCTGGACAGCAGCTACAGTGATGGAGAGGTGAACGACCTGGGCGGCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS GCA 72 bp | CCAGCATCACCCCTCGAGGCTGGGGCAGCCCACAGGTaGAGGAGATCTTCTCCCGAAGCTTCCGTTCCTTCC | + |
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Preference number: 6 (lower is better) Translates to: PASPLEAGAAHR*RRSSPEASVPS Trigger: GGAAGGAACGGAAGCTTCGGGAGAAGATCTCCTGCACCTGTGGGCTGCCCCAGCCTCGAGGGGTGATGCTGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS GCA 72 bp | CTCTGTGGAGAGCCCCTCTCAGAGGCCAGAGTCAGCTaGACCATCATCCGGTCGGGTTTCTCTCCGTTCTCA | + |
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Preference number: 6 (lower is better) Translates to: LCGEPLSEARVS*TIIRSGFSPFS Trigger: TGAGAACGGAGAGAAACCCGACCGGATGATGGTGCAGCTGACTCTGGCCTCTGAGAGGGGCTCTCCACAGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS GCA 72 bp | CAGGATTGGGCTGCCTTGCTTGTGGGCATCGTCGTGTaGTCCTCGTCTCTGTCTCTGAGGTCTGCTGCCTTT | + |
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Preference number: 6 (lower is better) Translates to: QDWAALLVGIVV*SSSLSLRSAAF Trigger: AAAGGCAGCAGACCTCAGAGACAGAGACGAGGAGCACACGACGATGCCCACAAGCAAGGCAGCCCAATCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS CCA 72 bp | CACTGTAACTCTGAGGCTGTAGAGCACTTTGCCGTCTaGCTGGACGCGCAGCATGACGTTGTCTGTGGTGGT | + |
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Preference number: 6 (lower is better) Translates to: HCNSEAVEHFAV*LDAQHDVVCGG Trigger: ACCACCACAGACAACGTCATGCTGCGCGTCCAGCCAGACGGCAAAGTGCTCTACAGCCTCAGAGTTACAGTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS CAA 72 bp | ATGTCAGAGCTTCGTCTCAGGATTGGGCTGCCTTGCTaGTGGGCATCGTCGTGTGCTCCTCGTCTCTGTCTC | + |
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Preference number: 6 (lower is better) Translates to: MSELRLRIGLPC*WASSCAPRLCL Trigger: GAGACAGAGACGAGGAGCACACGACGATGCCCACAAGCAAGGCAGCCCAATCCTGAGACGAAGCTCTGACAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS TCA 72 bp | CAGGAATGGCTGGGCCTCCAAAACCAGGCCTCATGCTaGAATCATGGTCGTCTATCCTCAGCAGCTGCTCAG | + |
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Preference number: 6 (lower is better) Translates to: QEWLGLQNQASC*NHGRLSSAAAQ Trigger: CTGAGCAGCTGCTGAGGATAGACGACCATGATTTCAGCATGAGGCCTGGTTTTGGAGGCCCAGCCATTCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS TCA 72 bp | CATGGTCGTCTATCCTCAGCAGCTGCTCAGACTTGGTaGGAGGAGACTTGGTTATGTCAGAGCTTCGTCTCA | + |
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Preference number: 6 (lower is better) Translates to: HGRLSSAAAQTW*EETWLCQSFVS Trigger: TGAGACGAAGCTCTGACATAACCAAGTCTCCTCTCACCAAGTCTGAGCAGCTGCTGAGGATAGACGACCATG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS TCA 72 bp | AGATCTTCTTTACAAGTCGGCCATCAAAGGTCATGCTaGGGTTGTTGGAGCTGGGGAAAGACAGTCTCTCGT | + |
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Preference number: 6 (lower is better) Translates to: RSSLQVGHQRSC*GCWSWGKTVSR Trigger: ACGAGAGACTGTCTTTCCCCAGCTCCAACAACCTCAGCATGACCTTTGATGGCCGACTTGTAAAGAAGATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS GCA 72 bp | CTCATGCTGAAATCATGGTCGTCTATCCTCAGCAGCTaGTCAGACTTGGTGAGAGGAGACTTGGTTATGTCA | + |
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Preference number: 6 (lower is better) Translates to: LMLKSWSSILSS*SDLVRGDLVMS Trigger: TGACATAACCAAGTCTCCTCTCACCAAGTCTGAGCAGCTGCTGAGGATAGACGACCATGATTTCAGCATGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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| CDS CAA 72 bp | AAATCATGGTCGTCTATCCTCAGCAGCTGCTCAGACTaGGTGAGAGGAGACTTGGTTATGTCAGAGCTTCGT | + |
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Preference number: 6 (lower is better) Translates to: KSWSSILSSCSD*VRGDLVMSELR Trigger: ACGAAGCTCTGACATAACCAAGTCTCCTCTCACCAAGTCTGAGCAGCTGCTGAGGATAGACGACCATGATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029947.6 |
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