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Pregenerated sensors for GABRG3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000055026

Ensembl transcript IDs: ENSMUST00000068394.7, ENSMUST00000068911.13

Found 228 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AATCCAAATACAAATACAGAGGGCGGCCCAGCCACAAGGCTCAGGTaGCTTCTGGCTGGGTTTGGCCCTGAGGGCTCGGCGGGGTCGCGA +
Preference number: 1 (lower is better)
Translates to: NPNTNTEGGPATRLR*LLAGFGPEGSAGSR
Trigger: TCGCGACCCCGCCGAGCCCTCAGGGCCAAACCCAGCCAGAAGCCACCTGAGCCTTGTGGCTGGGCCGCCCTCTGTATTTGTATTTGGATT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CCA 90 bp CCAGCCTCTGACCATGATCCCAGTTCTCTAAGGGGCCAGCCAGCTTaGACAGGACAGGTCACCCTCCTCCCAGCCAATGCCCTCTACAGT +
Preference number: 1 (lower is better)
Translates to: PASDHDPSSLRGQPA*TGQVTLLPANALYS
Trigger: ACTGTAGAGGGCATTGGCTGGGAGGAGGGTGACCTGTCCTGTCCAAGCTGGCTGGCCCCTTAGAGAACTGGGATCATGGTCAGAGGCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CCA 90 bp GTGTTTGCAATTGTGTGTGTGGCTTGCTCTCTGTCTTCAGTGTTGTaGGCACCTTCAGAGTGGGCCTGCCAAAGGCTGGAGCTTCAGAGA +
Preference number: 1 (lower is better)
Translates to: VFAIVCVACSLSSVL*APSEWACQRLELQR
Trigger: TCTCTGAAGCTCCAGCCTTTGGCAGGCCCACTCTGAAGGTGCCCACAACACTGAAGACAGAGAGCAAGCCACACACACAATTGCAAACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR GCA 90 bp GACCCTGCTAATGAGTGGAAATGTGTGGTTGTCACCAATAGAGGATaGTTCAAAAGAGTCATGGAGTGCACAAGACTTGGAGTGCACAAG +
Preference number: 1 (lower is better)
Translates to: DPANEWKCVVVTNRG*FKRVMECTRLGVHK
Trigger: CTTGTGCACTCCAAGTCTTGTGCACTCCATGACTCTTTTGAAGCATCCTCTATTGGTGACAACCACACATTTCCACTCATTAGCAGGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR GCA 90 bp GAAAGTAACCAGGAAATAAATACTGGGTGGCATGCATTCCTCAAATaGTGGGAAACTCTGGAACCAGGGCAGATGGACTTCCAAGGAATG +
Preference number: 1 (lower is better)
Translates to: ESNQEINTGWHAFLK*WETLEPGQMDFQGM
Trigger: CATTCCTTGGAAGTCCATCTGCCCTGGTTCCAGAGTTTCCCAGCATTTGAGGAATGCATGCCACCCAGTATTTATTTCCTGGTTACTTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CCA 90 bp GTGTACGGGCACTGGTCCCAAGCGATGCAAAAGGAAGATACACAATaGGGAGGATCTGAGACAATGTCTAGATATTGGTTTGCATCTTTC +
Preference number: 1 (lower is better)
Translates to: VYGHWSQAMQKEDTQ*GGSETMSRYWFASF
Trigger: GAAAGATGCAAACCAATATCTAGACATTGTCTCAGATCCTCCCCATTGTGTATCTTCCTTTTGCATCGCTTGGGACCAGTGCCCGTACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CCA 90 bp GGAAATGTGTGGTTGTCACCAATAGAGGATGCTTCAAAAGAGTCATaGAGTGCACAAGACTTGGAGTGCACAAGAGCATCTGGTCATAGC +
Preference number: 1 (lower is better)
Translates to: GNVWLSPIEDASKES*SAQDLECTRASGHS
Trigger: GCTATGACCAGATGCTCTTGTGCACTCCAAGTCTTGTGCACTCCATGACTCTTTTGAAGCATCCTCTATTGGTGACAACCACACATTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR TCA 90 bp ATGCCTGCCCACGCTAGGTACAGAGACAAAAGTGGTTGGCATTCTTaGTGGTGGTTGAAATCACAGATACAGAATACATGGATCCAGAAG +
Preference number: 1 (lower is better)
Translates to: MPAHARYRDKSGWHS*WWLKSQIQNTWIQK
Trigger: CTTCTGGATCCATGTATTCTGTATCTGTGATTTCAACCACCATCAAGAATGCCAACCACTTTTGTCTCTGTACCTAGCGTGGGCAGGCAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR TCA 90 bp CCAGGATCCCTCAGGAAAACAGAACTCTCAGATGCACAGATCCTTTaGATAAAGTGGGGCATTATGTGCATAGACACTATGCACATTCTT +
Preference number: 1 (lower is better)
Translates to: PGSLRKTELSDAQIL*IKWGIMCIDTMHIL
Trigger: AAGAATGTGCATAGTGTCTATGCACATAATGCCCCACTTTATTCAAAGGATCTGTGCATCTGAGAGTTCTGTTTTCCTGAGGGATCCTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR GCA 90 bp GAGGACCCTAAAAATTCTTGTAATGTATCAAAGTATATTGGCAAATaGCTGAACATCAGTCCTTCAGGGAGCAGAGGAAGGAGGATAGGG +
Preference number: 1 (lower is better)
Translates to: EDPKNSCNVSKYIGK*LNISPSGSRGRRIG
Trigger: CCCTATCCTCCTTCCTCTGCTCCCTGAAGGACTGATGTTCAGGCATTTGCCAATATACTTTGATACATTACAAGAATTTTTAGGGTCCTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR CCA 90 bp TATTTAAGAAATGAACACTGGCTTGGTTATGTAAATGTACTGACATaGTACTTCAGTGGGCAGGGCAGCCAGGAGACATCAGGATCTAAG +
Preference number: 1 (lower is better)
Translates to: YLRNEHWLGYVNVLT*YFSGQGSQETSGSK
Trigger: CTTAGATCCTGATGTCTCCTGGCTGCCCTGCCCACTGAAGTACCATGTCAGTACATTTACATAACCAAGCCAGTGTTCATTTCTTAAATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR TCA 90 bp GTACCAGAATGGGTTATCCTGGGATTTCAGACTGACATAGACAATTaGACTTTACTGAGAAACAGGCATTGGCATACTCGTGACATGTGT +
Preference number: 1 (lower is better)
Translates to: VPEWVILGFQTDIDN*TLLRNRHWHTRDMC
Trigger: ACACATGTCACGAGTATGCCAATGCCTGTTTCTCAGTAAAGTTCAATTGTCTATGTCAGTCTGAAATCCCAGGATAACCCATTCTGGTAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR TCA 90 bp TCTCCCGTTTCATGTACCAGAATGGGTTATCCTGGGATTTCAGACTaGCATAGACAATTGAACTTTACTGAGAAACAGGCATTGGCATAC +
Preference number: 1 (lower is better)
Translates to: SPVSCTRMGYPGISD*HRQLNFTEKQALAY
Trigger: GTATGCCAATGCCTGTTTCTCAGTAAAGTTCAATTGTCTATGTCAGTCTGAAATCCCAGGATAACCCATTCTGGTACATGAAACGGGAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR TCA 90 bp AGTGAAATATTTATAAGGAATACTTTCCAGTACTTCCCAAGCTGCTaGAAGGTAGCACAACAAACTGGAGTCATGTCCTTCCCTGCTACT +
Preference number: 1 (lower is better)
Translates to: SEIFIRNTFQYFPSC*KVAQQTGVMSFPAT
Trigger: AGTAGCAGGGAAGGACATGACTCCAGTTTGTTGTGCTACCTTTCAGCAGCTTGGGAAGTACTGGAAAGTATTCCTTATAAATATTTCACT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR TCA 90 bp TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCACATGTGAGTaGGTGTGTGTGAGTGAAATATTTATAAGGAATACTTTCCAGTAC +
Preference number: 1 (lower is better)
Translates to: LCVCVCVCVCVCTCE*VCVSEIFIRNTFQY
Trigger: GTACTGGAAAGTATTCCTTATAAATATTTCACTCACACACACTCACTCACATGTGCACACACACACACACACACACACACACACACACAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR TCA 90 bp TCTCCTAGAGCCTTTCATGGAAAACACAAACAAGCAAAGCTTTGCTaGGTCCAGGAGCTGCTTAAGAAAACATGTATCTGTAGACAAATT +
Preference number: 1 (lower is better)
Translates to: SPRAFHGKHKQAKLC*VQELLKKTCICRQI
Trigger: AATTTGTCTACAGATACATGTTTTCTTAAGCAGCTCCTGGACTCAGCAAAGCTTTGCTTGTTTGTGTTTTCCATGAAAGGCTCTAGGAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR TCA 90 bp AACAAAACAAAGCAGGAACTAGCTCAGTTTGGGAGGTTTTGTTGTTaGAAGTCAATTGTTTCTCCCTACCCTTTCAGCTTAAACTACCTT +
Preference number: 1 (lower is better)
Translates to: NKTKQELAQFGRFCC*KSIVSPYPFSLNYL
Trigger: AAGGTAGTTTAAGCTGAAAGGGTAGGGAGAAACAATTGACTTTCAACAACAAAACCTCCCAAACTGAGCTAGTTCCTGCTTTGTTTTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CCA 90 bp AACTGGCAGCTTCTGTATCCAAGGCCATTCATATATATCAAACTATaGGTTGAAGAAGGGATTAGCAAGAATATCACTTTGAAGATGCAG +
Preference number: 1 (lower is better)
Translates to: NWQLLYPRPFIYIKL*VEEGISKNITLKMQ
Trigger: CTGCATCTTCAAAGTGATATTCTTGCTAATCCCTTCTTCAACCCATAGTTTGATATATATGAATGGCCTTGGATACAGAAGCTGCCAGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR TCA 90 bp GTCGCCAAGGCACGTTGGGCACAAGGGCGCCCTCTCTTCACTAGGACACCACGAATGCCGCCAGGGCTCTaGAGTGATAGAATGGGGGTG +
Preference number: 2 (lower is better)
Translates to: VAKARWAQGRPLFTRTPRMPPGL*SDRMGV
Trigger: CACCCCCATTCTATCACTTCAGAGCCCTGGCGGCAT...TCGTGGTGTCCTAGTGAAGAGAGGGCGCCCTTGTGCCCAACGTGCCTTGGCGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR TCA 90 bp GCCGGGGTCGCCAAGGCACGTTGGGCACAAGGGCGCCCTCTCTTCACTAGGACAGCTCTTCCTATGTTTTaGTCAGCATGGCTGAGGTTG +
Preference number: 2 (lower is better)
Translates to: AGVAKARWAQGRPLFTRTALPMF*SAWLRL
Trigger: CAACCTCAGCCATGCTGATCAAAACATAGGAAGAGC...TGTCCTAGTGAAGAGAGGGCGCCCTTGTGCCCAACGTGCCTTGGCGACCCCGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR GCA 90 bp GCCGGGGTCGCCAAGGCACGTTGGGCACAAGGGCGCCCTCTCTTCACTAGGACAGGATTGTACTGTGGATaGCATAACAGTGCCAAGACC +
Preference number: 2 (lower is better)
Translates to: AGVAKARWAQGRPLFTRTGLYCG*HNSAKT
Trigger: GGTCTTGGCACTGTTATGGCATCCACAGTACAATCC...TGTCCTAGTGAAGAGAGGGCGCCCTTGTGCCCAACGTGCCTTGGCGACCCCGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp GTCGCCAAGGCACGTTGGGCACAAGGGCGCCCTCTCTTCACTAGGACACCACGAGGTAGCACAACAAACTaGAGTCATGTCCTTCCCTGC +
Preference number: 2 (lower is better)
Translates to: VAKARWAQGRPLFTRTPRGSTTN*SHVLPC
Trigger: GCAGGGAAGGACATGACTCCAGTTTGTTGTGCTACC...TCGTGGTGTCCTAGTGAAGAGAGGGCGCCCTTGTGCCCAACGTGCCTTGGCGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp GCCGGGGTCGCCAAGGCACGTTGGGCACAAGGGCGCCCTCTCTTCACTAGGACAGCTTCAAAAGAGTCATaGAGTGCACAAGACTTGGAG +
Preference number: 2 (lower is better)
Translates to: AGVAKARWAQGRPLFTRTASKES*SAQDLE
Trigger: CTCCAAGTCTTGTGCACTCCATGACTCTTTTGAAGC...TGTCCTAGTGAAGAGAGGGCGCCCTTGTGCCCAACGTGCCTTGGCGACCCCGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp GCCGGGGTCGCCAAGGCACGTTGGGCACAAGGGCGCCCTCTCTTCACTAGGACATTTTTCCTAGCCCTTTaGATAGAGTGGACCTCTGCT +
Preference number: 2 (lower is better)
Translates to: AGVAKARWAQGRPLFTRTFFLAL*IEWTSA
Trigger: AGCAGAGGTCCACTCTATCCAAAGGGCTAGGAAAAA...TGTCCTAGTGAAGAGAGGGCGCCCTTGTGCCCAACGTGCCTTGGCGACCCCGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp GTCGCCAAGGCACGTTGGGCACAAGGGCGCCCTCTCTTCACTAGGACACCACGAGCATTCCTCAAATGCTaGGAAACTCTGGAACCAGGG +
Preference number: 2 (lower is better)
Translates to: VAKARWAQGRPLFTRTPRAFLKC*ETLEPG
Trigger: CCCTGGTTCCAGAGTTTCCCAGCATTTGAGGAATGC...TCGTGGTGTCCTAGTGAAGAGAGGGCGCCCTTGTGCCCAACGTGCCTTGGCGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR TCA 90 bp GCCGGGGTCGCCAAGGCACGTTGGGCACAAGGGCGCCCTCTCTTCACTAGGACATTAAAAGAGGGAAGTTaGAACATCCCAACTTCAAGG +
Preference number: 2 (lower is better)
Translates to: AGVAKARWAQGRPLFTRTLKEGS*NIPTSR
Trigger: CCTTGAAGTTGGGATGTTTCAACTTCCCTCTTTTAA...TGTCCTAGTGAAGAGAGGGCGCCCTTGTGCCCAACGTGCCTTGGCGACCCCGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp GCCGGGGTCGCCAAGGCACGTTGGGCACAAGGGCGCCCTCTCTTCACTAGGACAATGAGTGGAAATGTGTaGTTGTCACCAATAGAGGAT +
Preference number: 2 (lower is better)
Translates to: AGVAKARWAQGRPLFTRTMSGNV*LSPIED
Trigger: ATCCTCTATTGGTGACAACCACACATTTCCACTCAT...TGTCCTAGTGAAGAGAGGGCGCCCTTGTGCCCAACGTGCCTTGGCGACCCCGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR GCA 90 bp GTCGCCAAGGCACGTTGGGCACAAGGGCGCCCTCTCTTCACTAGGACACCACGAAAGACAGAAAATCTCTaGACTGCTTTGGTGGCTACA +
Preference number: 2 (lower is better)
Translates to: VAKARWAQGRPLFTRTPRKTENL*TALVAT
Trigger: TGTAGCCACCAAAGCAGTGCAGAGATTTTCTGTCTT...TCGTGGTGTCCTAGTGAAGAGAGGGCGCCCTTGTGCCCAACGTGCCTTGGCGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp GTCGCCAAGGCACGTTGGGCACAAGGGCGCCCTCTCTTCACTAGGACACCACGAACCCAAGAAACTTGGTaGTGCTTACATGTTCTCCAT +
Preference number: 2 (lower is better)
Translates to: VAKARWAQGRPLFTRTPRTQETW*CLHVLH
Trigger: ATGGAGAACATGTAAGCACCACCAAGTTTCTTGGGT...TCGTGGTGTCCTAGTGAAGAGAGGGCGCCCTTGTGCCCAACGTGCCTTGGCGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 90 bp ACAGTGTTTGCAATTGTGTGTGTGGCTTGCTCTCTGTCTTCAGTGTaGTGGGCACCTTCAGAGTGGGCCTGCCAAAGGCTGGAGCTTCAG +
Preference number: 2 (lower is better)
Translates to: TVFAIVCVACSLSSV*WAPSEWACQRLELQ
Trigger: CTGAAGCTCCAGCCTTTGGCAGGCCCACTCTGAAGGTGCCCACAACACTGAAGACAGAGAGCAAGCCACACACACAATTGCAAACACTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 90 bp GGACAGGTCACCCTCCTCCCAGCCAATGCCCTCTACAGTCCTCACTaGCTCAGAACTGCTATCAAAATGCTGTGGGATTCTGGAATCAGC +
Preference number: 2 (lower is better)
Translates to: GQVTLLPANALYSPH*LRTAIKMLWDSGIS
Trigger: GCTGATTCCAGAATCCCACAGCATTTTGATAGCAGTTCTGAGCAAGTGAGGACTGTAGAGGGCATTGGCTGGGAGGAGGGTGACCTGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR TCA 90 bp GGAATCCAAATACAAATACAGAGGGCGGCCCAGCCACAAGGCTCAGGTGGCTTCCATGTGTTTGCAGGGTaGAGACAGTTACCGAATCCC +
Preference number: 2 (lower is better)
Translates to: GIQIQIQRAAQPQGSGGFHVFAG*RQLPNP
Trigger: GGGATTCGGTAACTGTCTTCACCCTGCAAACACATG...GAAGCCACCTGAGCCTTGTGGCTGGGCCGCCCTCTGTATTTGTATTTGGATTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR TCA 90 bp GGAATCCAAATACAAATACAGAGGGCGGCCCAGCCACAAGGCTCAGGTGGCTTCAGGTTAGAGGAGGCTTaGGTTTGTGTGCCCACACAT +
Preference number: 2 (lower is better)
Translates to: GIQIQIQRAAQPQGSGGFRLEEA*VCVPTH
Trigger: ATGTGTGGGCACACAAACTCAAGCCTCCTCTAACCT...GAAGCCACCTGAGCCTTGTGGCTGGGCCGCCCTCTGTATTTGTATTTGGATTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 90 bp GTGTACCAGACTCTCCTCAGAGTTCACCTTATAAAGCCCCTGGTTTaGCCCCTGAGCAATGGGCAGGCATCTCTCCCGTTTCATGTACCA +
Preference number: 2 (lower is better)
Translates to: VYQTLLRVHLIKPLV*PLSNGQASLPFHVP
Trigger: TGGTACATGAAACGGGAGAGATGCCTGCCCATTGCTCAGGGGCAAAACCAGGGGCTTTATAAGGTGAACTCTGAGGAGAGTCTGGTACAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR GCA 90 bp CCTGGGAGATTGTTCAGTAGGTGCAAGCACAACCCTACCAGAAGCACTCGCCTCGCACAAGACTTGGAGTaGACAAGAGCATCTGGTCAT +
Preference number: 2 (lower is better)
Translates to: PGRLFSRCKHNPTRSTRLAQDLE*TRASGH
Trigger: ATGACCAGATGCTCTTGTGCACTCCAAGTCTTGTGC...GAGGCGAGTGCTTCTGGTAGGGTTGTGCTTGCACCTACTGAACAATCTCCCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp CAGACCACCACCCAAGCAATTCCCCAGATCTTCACACGAAGGAAACAAAGCAGAGGGCCTGCCAAAGGCTaGAGCTTCAGAGACACTAGA +
Preference number: 2 (lower is better)
Translates to: QTTTQAIPQIFTRRKQSRGPAKG*SFRDTR
Trigger: TCTAGTGTCTCTGAAGCTCCAGCCTTTGGCAGGCCC...TCTGCTTTGTTTCCTTCGTGTGAAGATCTGGGGAATTGCTTGGGTGGTGGTCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp CCTGGGAGATTGTTCAGTAGGTGCAAGCACAACCCTACCAGAAGCACTCGCCTCGTAAATGTACTGACATaGTACTTCAGTGGGCAGGGC +
Preference number: 2 (lower is better)
Translates to: PGRLFSRCKHNPTRSTRLVNVLT*YFSGQG
Trigger: GCCCTGCCCACTGAAGTACCATGTCAGTACATTTAC...GAGGCGAGTGCTTCTGGTAGGGTTGTGCTTGCACCTACTGAACAATCTCCCAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp GACCACCACCCAAGCAATTCCCCAGATCTTCACACGAAGGAAACAAAGCAGAATTTTGCCCCTGAGCAATaGGCAGGCATCTCTCCCGTT +
Preference number: 2 (lower is better)
Translates to: DHHPSNSPDLHTKETKQNFAPEQ*AGISPV
Trigger: AACGGGAGAGATGCCTGCCCATTGCTCAGGGGCAAA...ATTCTGCTTTGTTTCCTTCGTGTGAAGATCTGGGGAATTGCTTGGGTGGTGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 90 bp CAGCTGATCCGCAGTGAAGACCATGATGTGGCAAAGACATTCCCTTaGTTTAATGTCATCCCTGGGCACTCATCCCAGCTCAGTCCCTTT +
Preference number: 2 (lower is better)
Translates to: QLIRSEDHDVAKTFP*FNVIPGHSSQLSPF
Trigger: AAAGGGACTGAGCTGGGATGAGTGCCCAGGGATGACATTAAACAAAGGGAATGTCTTTGCCACATCATGGTCTTCACTGCGGATCAGCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR-3UTR TCA 90 bp GCACTCTTTAGAGCAGGGACACAGTCTCAGCCCCAGGTTGCTTTCTACAGTAGGCTCTATTTCCCCCATTaGTCATCTCTCATCCTAAGC +
Preference number: 2 (lower is better)
Translates to: ALFRAGTQSQPQVAFYSRLYFPH*SSLILS
Trigger: GCTTAGGATGAGAGATGATCAATGGGGGAAATAGAG...CCTACTGTAGAAAGCAACCTGGGGCTGAGACTGTGTCCCTGCTCTAAAGAGTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR-3UTR TCA 90 bp CCTGGGAGATTGTTCAGTAGGTGCAAGCACAACCCTACCAGAAGCACTCGCCTCGGGAGGTTTTGTTGTTaGAAGTCAATTGTTTCTCCC +
Preference number: 2 (lower is better)
Translates to: PGRLFSRCKHNPTRSTRLGRFCC*KSIVSP
Trigger: GGGAGAAACAATTGACTTTCAACAACAAAACCTCCC...GAGGCGAGTGCTTCTGGTAGGGTTGTGCTTGCACCTACTGAACAATCTCCCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR GCA 90 bp GGAATCCAAATACAAATACAGAGGGCGGCCCAGCCACAAGGCTCAGGTGGCTTCACTGGTCCCAAGCGATaGAAAAGGAAGATACACAAT +
Preference number: 2 (lower is better)
Translates to: GIQIQIQRAAQPQGSGGFTGPKR*KRKIHN
Trigger: ATTGTGTATCTTCCTTTTGCATCGCTTGGGACCAGT...GAAGCCACCTGAGCCTTGTGGCTGGGCCGCCCTCTGTATTTGTATTTGGATTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp GGAATCCAAATACAAATACAGAGGGCGGCCCAGCCACAAGGCTCAGGTGGCTTCATGAATGGAAACTTGTaGCTTATATACCTCCCAGGC +
Preference number: 2 (lower is better)
Translates to: GIQIQIQRAAQPQGSGGFMNGNL*LIYLPG
Trigger: GCCTGGGAGGTATATAAGCCACAAGTTTCCATTCAT...GAAGCCACCTGAGCCTTGTGGCTGGGCCGCCCTCTGTATTTGTATTTGGATTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp GGAATCCAAATACAAATACAGAGGGCGGCCCAGCCACAAGGCTCAGGTGGCTTCCTACAAACTAGACCATaGACAAAAACCATGACGGAG +
Preference number: 2 (lower is better)
Translates to: GIQIQIQRAAQPQGSGGFLQTRP*TKTMTE
Trigger: CTCCGTCATGGTTTTTGTCCATGGTCTAGTTTGTAG...GAAGCCACCTGAGCCTTGTGGCTGGGCCGCCCTCTGTATTTGTATTTGGATTCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 90 bp AATGTCATCCCTGGGCACTCATCCCAGCTCAGTCCCTTTTCCCTCTaGAAATGGATCTTATTCTTGGCCTCATTAGAGTCACACTGCAGG +
Preference number: 2 (lower is better)
Translates to: NVIPGHSSQLSPFSL*KWILFLASLESHCR
Trigger: CCTGCAGTGTGACTCTAATGAGGCCAAGAATAAGATCCATTTCAAGAGGGAAAAGGGACTGAGCTGGGATGAGTGCCCAGGGATGACATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR-3UTR TCA 90 bp CCTGGGAGATTGTTCAGTAGGTGCAAGCACAACCCTACCAGAAGCACTCGCCTCGCAAGAATATCACTTTaGAGATGCAGTTCCTCTTTG +
Preference number: 2 (lower is better)
Translates to: PGRLFSRCKHNPTRSTRLARISL*RCSSSL
Trigger: CAAAGAGGAACTGCATCTTCAAAGTGATATTCTTGC...GAGGCGAGTGCTTCTGGTAGGGTTGTGCTTGCACCTACTGAACAATCTCCCAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR TCA 90 bp CAGACCACCACCCAAGCAATTCCCCAGATCTTCACACGAAGGAAACAAAGCAGAGACTGCACTTCAAACTaGATCTCAGAGAGGTCACCA +
Preference number: 2 (lower is better)
Translates to: QTTTQAIPQIFTRRKQSRDCTSN*ISERSP
Trigger: TGGTGACCTCTCTGAGATTCAGTTTGAAGTGCAGTC...TCTGCTTTGTTTCCTTCGTGTGAAGATCTGGGGAATTGCTTGGGTGGTGGTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR GCA 90 bp AATGTACTGACATGGTACTTCAGTGGGCAGGGCAGCCAGGAGACATCAGGATCTATTGTGTGTGTGGCTTaGTCTCTGTCTTCAGTGTTG +
Preference number: 2 (lower is better)
Translates to: NVLTWYFSGQGSQETSGSIVCVA*SLSSVL
Trigger: CAACACTGAAGACAGAGAGCAAGCCACACACACAAT...AGATCCTGATGTCTCCTGGCTGCCCTGCCCACTGAAGTACCATGTCAGTACATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR GCA 90 bp AACCAGGAAATAAATACTGGGTGGCATGCATTCCTCAAATGCTGGGAAACTCTGGTGTCTAAGGAGGGGTaGATCTCTCCCTCTCCTCCA +
Preference number: 2 (lower is better)
Translates to: NQEINTGWHAFLKCWETLVSKEG*ISPSPP
Trigger: TGGAGGAGAGGGAGAGATGCACCCCTCCTTAGACAC...CAGAGTTTCCCAGCATTTGAGGAATGCATGCCACCCAGTATTTATTTCCTGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp GCACTCTTTAGAGCAGGGACACAGTCTCAGCCCCAGGTTGCTTTCTACAGTAGGGTGAAGACCATGATGTaGCAAAGACATTCCCTTTGT +
Preference number: 2 (lower is better)
Translates to: ALFRAGTQSQPQVAFYSRVKTMM*QRHSLC
Trigger: ACAAAGGGAATGTCTTTGCCACATCATGGTCTTCAC...CCTACTGTAGAAAGCAACCTGGGGCTGAGACTGTGTCCCTGCTCTAAAGAGTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR-3UTR CCA 90 bp GGAATCCAAATACAAATACAGAGGGCGGCCCAGCCACAAGGCTCAGGTGGCTTCTTTCATGTACCAGAATaGGTTATCCTGGGATTTCAG +
Preference number: 2 (lower is better)
Translates to: GIQIQIQRAAQPQGSGGFFHVPE*VILGFQ
Trigger: CTGAAATCCCAGGATAACCCATTCTGGTACATGAAA...GAAGCCACCTGAGCCTTGTGGCTGGGCCGCCCTCTGTATTTGTATTTGGATTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp GGAATCCAAATACAAATACAGAGGGCGGCCCAGCCACAAGGCTCAGGTGGCTTCAACAACTTCTTATTCTaGGAAGGTGTCTGTGTTAGC +
Preference number: 2 (lower is better)
Translates to: GIQIQIQRAAQPQGSGGFNNFLF*EGVCVS
Trigger: GCTAACACAGACACCTTCCCAGAATAAGAAGTTGTT...GAAGCCACCTGAGCCTTGTGGCTGGGCCGCCCTCTGTATTTGTATTTGGATTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp GGAATCCAAATACAAATACAGAGGGCGGCCCAGCCACAAGGCTCAGGTGGCTTCGGAACTAGCTCAGTTTaGGAGGTTTTGTTGTTGAAA +
Preference number: 2 (lower is better)
Translates to: GIQIQIQRAAQPQGSGGFGTSSV*EVLLLK
Trigger: TTTCAACAACAAAACCTCCCAAACTGAGCTAGTTCC...GAAGCCACCTGAGCCTTGTGGCTGGGCCGCCCTCTGTATTTGTATTTGGATTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR TCA 90 bp AATGTACTGACATGGTACTTCAGTGGGCAGGGCAGCCAGGAGACATCAGGATCTCATGAGAATAGCTTGTaGTTAAGGACCAGCATTTCC +
Preference number: 2 (lower is better)
Translates to: NVLTWYFSGQGSQETSGSHENSL*LRTSIS
Trigger: GGAAATGCTGGTCCTTAATCACAAGCTATTCTCATG...AGATCCTGATGTCTCCTGGCTGCCCTGCCCACTGAAGTACCATGTCAGTACATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp CCTGGGAGATTGTTCAGTAGGTGCAAGCACAACCCTACCAGAAGCACTCGCCTCACAATGTCTAGATATTaGTTTGCATCTTTCACAGGG +
Preference number: 2 (lower is better)
Translates to: PGRLFSRCKHNPTRSTRLTMSRY*FASFTG
Trigger: CCCTGTGAAAGATGCAAACCAATATCTAGACATTGT...GAGGCGAGTGCTTCTGGTAGGGTTGTGCTTGCACCTACTGAACAATCTCCCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR TCA 90 bp TGCTTGTCTGTCAGGTCCTGTGTCTTTGTGGATAGTAGCAGCCTGATCATAATGTTTTTGTGCATGGGATaGGGTATAGAGGGGAAGGTG +
Preference number: 2 (lower is better)
Translates to: CLSVRSCVFVDSSSLIIMFLCMG*GIEGKV
Trigger: CACCTTCCCCTCTATACCTCATCCCATGCACAAAAA...CATTATGATCAGGCTGCTACTATCCACAAAGACACAGGACCTGACAGACAAGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR-3UTR GCA 90 bp TTTCCTAGCCCTTTGGATAGAGTGGACCTCTGCTTCCTAGCTGTGTCAAGACAAAATGCTGGATTCAAATaGAACTGGTCCAGGAACCCA +
Preference number: 2 (lower is better)
Translates to: FPSPLDRVDLCFLAVSRQNAGFK*NWSRNP
Trigger: TGGGTTCCTGGACCAGTTGCATTTGAATCCAGCATT...TTGTCTTGACACAGCTAGGAAGCAGAGGTCCACTCTATCCAAAGGGCTAGGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR GCA 90 bp ATCTTTCCAGAAGATTCCTGTGAACCGGGGCATAACTTGATGTTTAAGAAAATGGCACTCGCCTCGCTGTaGCAGGAAGCAGACTCATTC +
Preference number: 2 (lower is better)
Translates to: IFPEDSCEPGHNLMFKKMALASL*QEADSF
Trigger: GAATGAGTCTGCTTCCTGGCACAGCGAGGCGAGTGC...CATTTTCTTAAACATCAAGTTATGCCCCGGTTCACAGGAATCTTCTGGAAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp GCACTCTTTAGAGCAGGGACACAGTCTCAGCCCCAGGTTGCTTTCTACAGTAGGTTTTCCCTCTTGAAATaGATCTTATTCTTGGCCTCA +
Preference number: 2 (lower is better)
Translates to: ALFRAGTQSQPQVAFYSRFSLLK*ILFLAS
Trigger: TGAGGCCAAGAATAAGATCCATTTCAAGAGGGAAAA...CCTACTGTAGAAAGCAACCTGGGGCTGAGACTGTGTCCCTGCTCTAAAGAGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR-3UTR CCA 90 bp TCAGTTTGGGAGGTTTTGTTGTTGAAAGTCAATTGTTTCTCCCTACCCTTTCAGACCTGTTCCCTGGGCTaGGACAACCTTGTACTGTGC +
Preference number: 2 (lower is better)
Translates to: SVWEVLLLKVNCFSLPFQTCSLG*DNLVLC
Trigger: GCACAGTACAAGGTTGTCCCAGCCCAGGGAACAGGT...CTGAAAGGGTAGGGAGAAACAATTGACTTTCAACAACAAAACCTCCCAAACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp TACCTAGGTATATCTATGAACAACTACATGGCTTCCCAAATAAACACTGCAAGGGACATGGTACTTCAGTaGGCAGGGCAGCCAGGAGAC +
Preference number: 2 (lower is better)
Translates to: YLGISMNNYMASQINTARDMVLQ*AGQPGD
Trigger: GTCTCCTGGCTGCCCTGCCCACTGAAGTACCATGTC...CCTTGCAGTGTTTATTTGGGAAGCCATGTAGTTGTTCATAGATATACCTAGGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 90 bp TGCCATAACAGTGCCAAGACCCTGCTAATGAGTGGAAATGTGTGGTaGTCACCAATAGAGGATGCTTCAAAAGAGTCATGGAGTGCACAA +
Preference number: 2 (lower is better)
Translates to: CHNSAKTLLMSGNVW*SPIEDASKESWSAQ
Trigger: TTGTGCACTCCATGACTCTTTTGAAGCATCCTCTATTGGTGACAACCACACATTTCCACTCATTAGCAGGGTCTTGGCACTGTTATGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 90 bp CCTCATCATCTGAGACTGAGACTTGGTCTTATAAATCGCAGCTCTTaGAAAAATGCTGGATTCAAATGCAACTGGTCCAGGAACCCAGGA +
Preference number: 2 (lower is better)
Translates to: PHHLRLRLGLINRSS*KNAGFKCNWSRNPG
Trigger: TCCTGGGTTCCTGGACCAGTTGCATTTGAATCCAGCATTTTTCAAAGAGCTGCGATTTATAAGACCAAGTCTCAGTCTCAGATGATGAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR TCA 90 bp TGCTTGTCTGTCAGGTCCTGTGTCTTTGTGGATAGTAGCAGCCTGATCATAATGGTCCCTTTTCCCTCTTaGAATGGATCTTATTCTTGG +
Preference number: 2 (lower is better)
Translates to: CLSVRSCVFVDSSSLIIMVPFPS*NGSYSW
Trigger: CCAAGAATAAGATCCATTTCAAGAGGGAAAAGGGAC...CATTATGATCAGGCTGCTACTATCCACAAAGACACAGGACCTGACAGACAAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR-3UTR CCA 90 bp CAGACCACCACCCAAGCAATTCCCCAGATCTTCACACGAAGGAAACAAAGCAGAAACCATCACCAATTTTaGGATCTAAAGTTGGTTTGG +
Preference number: 2 (lower is better)
Translates to: QTTTQAIPQIFTRRKQSRNHHQF*DLKLVW
Trigger: CCAAACCAACTTTAGATCCCAAAATTGGTGATGGTT...TCTGCTTTGTTTCCTTCGTGTGAAGATCTGGGGAATTGCTTGGGTGGTGGTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 90 bp TCCAGGATCCCTCAGGAAAACAGAACTCTCAGATGCACAGATCCTTaGAATAAAGTGGGGCATTATGTGCATAGACACTATGCACATTCT +
Preference number: 2 (lower is better)
Translates to: SRIPQENRTLRCTDP*NKVGHYVHRHYAHS
Trigger: AGAATGTGCATAGTGTCTATGCACATAATGCCCCACTTTATTCAAAGGATCTGTGCATCTGAGAGTTCTGTTTTCCTGAGGGATCCTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR TCA 90 bp AACCAGGAAATAAATACTGGGTGGCATGCATTCCTCAAATGCTGGGAAACTCTGAGAAGCCAGTTGACTTaGGCCTTATGTGGTAACTAT +
Preference number: 2 (lower is better)
Translates to: NQEINTGWHAFLKCWETLRSQLT*ALCGNY
Trigger: ATAGTTACCACATAAGGCTCAAGTCAACTGGCTTCT...CAGAGTTTCCCAGCATTTGAGGAATGCATGCCACCCAGTATTTATTTCCTGGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp CAAGTCTGTACTGAGTGCAAGGGCAAGAGCCTGTCAAGAAAACAAGTAAAAATGCATTTCCACTGCACATaGGCTTTTTGTGCATGGGAT +
Preference number: 2 (lower is better)
Translates to: QVCTECKGKSLSRKQVKMHFHCT*AFCAWD
Trigger: ATCCCATGCACAAAAAGCCCATGTGCAGTGGAAATG...CATTTTTACTTGTTTTCTTGACAGGCTCTTGCCCTTGCACTCAGTACAGACTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR CAA 90 bp CATGTACTTGATTCACCTCTGGTTGTCTCTTCTCTATTTCCCCCATaGATCATCTCTCATCCTAAGCTATGTATGCAGATGCAGATAGAC +
Preference number: 2 (lower is better)
Translates to: HVLDSPLVVSSLFPP*IISHPKLCMQMQID
Trigger: GTCTATCTGCATCTGCATACATAGCTTAGGATGAGAGATGATCAATGGGGGAAATAGAGAAGAGACAACCAGAGGTGAATCAAGTACATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR-3UTR TCA 90 bp AACCAGGAAATAAATACTGGGTGGCATGCATTCCTCAAATGCTGGGAAACTCTGGTAATAGCCATGTTGTaGGCACCTGATCTAAGAAAT +
Preference number: 2 (lower is better)
Translates to: NQEINTGWHAFLKCWETLVIAML*APDLRN
Trigger: ATTTCTTAGATCAGGTGCTCACAACATGGCTATTAC...CAGAGTTTCCCAGCATTTGAGGAATGCATGCCACCCAGTATTTATTTCCTGGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR GCA 90 bp TCAGTTTGGGAGGTTTTGTTGTTGAAAGTCAATTGTTTCTCCCTACCCTTTCAGAAAAGAGTCATGGAGTaGACAAGACTTGGAGTGCAC +
Preference number: 2 (lower is better)
Translates to: SVWEVLLLKVNCFSLPFQKRVME*TRLGVH
Trigger: GTGCACTCCAAGTCTTGTGCACTCCATGACTCTTTT...CTGAAAGGGTAGGGAGAAACAATTGACTTTCAACAACAAAACCTCCCAAACTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp TGCTTGTCTGTCAGGTCCTGTGTCTTTGTGGATAGTAGCAGCCTGATCATAATGTACTTGATTCACCTCTaGTTGTCTCTTCTCTATTTC +
Preference number: 2 (lower is better)
Translates to: CLSVRSCVFVDSSSLIIMYLIHL*LSLLYF
Trigger: GAAATAGAGAAGAGACAACCAGAGGTGAATCAAGTA...CATTATGATCAGGCTGCTACTATCCACAAAGACACAGGACCTGACAGACAAGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR-3UTR TCA 90 bp CAAGTCTGTACTGAGTGCAAGGGCAAGAGCCTGTCAAGAAAACAAGTAAAAATGGACTGTATTAGGCTATaGATTTTGCTAAGCAGAGAG +
Preference number: 2 (lower is better)
Translates to: QVCTECKGKSLSRKQVKMDCIRL*ILLSRE
Trigger: CTCTCTGCTTAGCAAAATTCATAGCCTAATACAGTC...CATTTTTACTTGTTTTCTTGACAGGCTCTTGCCCTTGCACTCAGTACAGACTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR-3UTR TCA 90 bp TCAGTTTGGGAGGTTTTGTTGTTGAAAGTCAATTGTTTCTCCCTACCCTTTCAGGACAATGACAAGTTTTaGGATAAGAGGCAACTGTGG +
Preference number: 2 (lower is better)
Translates to: SVWEVLLLKVNCFSLPFQDNDKF*DKRQLW
Trigger: CCACAGTTGCCTCTTATCTCAAAACTTGTCATTGTC...CTGAAAGGGTAGGGAGAAACAATTGACTTTCAACAACAAAACCTCCCAAACTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp ATCTTTCCAGAAGATTCCTGTGAACCGGGGCATAACTTGATGTTTAAGAAAATGCTGAGAAACAGGCATTaGCATACTCGTGACATGTGT +
Preference number: 2 (lower is better)
Translates to: IFPEDSCEPGHNLMFKKMLRNRH*HTRDMC
Trigger: ACACATGTCACGAGTATGCCAATGCCTGTTTCTCAG...CATTTTCTTAAACATCAAGTTATGCCCCGGTTCACAGGAATCTTCTGGAAAGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp ATCTTTCCAGAAGATTCCTGTGAACCGGGGCATAACTTGATGTTTAAGAAAATGCCAAGGAGGCAGAGGTaGTGTCTGTTGTTTTGTTTT +
Preference number: 2 (lower is better)
Translates to: IFPEDSCEPGHNLMFKKMPRRQR*CLLFCF
Trigger: AAAACAAAACAACAGACACCACCTCTGCCTCCTTGG...CATTTTCTTAAACATCAAGTTATGCCCCGGTTCACAGGAATCTTCTGGAAAGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 90 bp TTCAATAAAATTAATTCAGCTTTGTGGGATAAAAGCACACCAGGATaGTACTGTGGATGCCATAACAGTGCCAAGACCCTGCTAATGAGT +
Preference number: 2 (lower is better)
Translates to: FNKINSALWDKSTPG*YCGCHNSAKTLLMS
Trigger: ACTCATTAGCAGGGTCTTGGCACTGTTATGGCATCCACAGTACAATCCTGGTGTGCTTTTATCCCACAAAGCTGAATTAATTTTATTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 90 bp GAACAAAACAAAGCAGGAACTAGCTCAGTTTGGGAGGTTTTGTTGTaGAAAGTCAATTGTTTCTCCCTACCCTTTCAGCTTAAACTACCT +
Preference number: 2 (lower is better)
Translates to: EQNKAGTSSVWEVLL*KVNCFSLPFQLKLP
Trigger: AGGTAGTTTAAGCTGAAAGGGTAGGGAGAAACAATTGACTTTCAACAACAAAACCTCCCAAACTGAGCTAGTTCCTGCTTTGTTTTGTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR GCA 90 bp ATCTTTCCAGAAGATTCCTGTGAACCGGGGCATAACTTGATGTTTAAGAAAATGGTCACCAATAGAGGATaGTTCAAAAGAGTCATGGAG +
Preference number: 2 (lower is better)
Translates to: IFPEDSCEPGHNLMFKKMVTNRG*FKRVME
Trigger: CTCCATGACTCTTTTGAAGCATCCTCTATTGGTGAC...CATTTTCTTAAACATCAAGTTATGCCCCGGTTCACAGGAATCTTCTGGAAAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR GCA 90 bp AACCAGGAAATAAATACTGGGTGGCATGCATTCCTCAAATGCTGGGAAACTCTGCTAAACATCTTTAACTaGAGCAACATATTACCAGGT +
Preference number: 2 (lower is better)
Translates to: NQEINTGWHAFLKCWETLLNIFN*SNILPG
Trigger: ACCTGGTAATATGTTGCTGCAGTTAAAGATGTTTAG...CAGAGTTTCCCAGCATTTGAGGAATGCATGCCACCCAGTATTTATTTCCTGGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR TCA 90 bp TACCTAGGTATATCTATGAACAACTACATGGCTTCCCAAATAAACACTGCAAGGCAGCATTTCCATGTTTaGAGATTCCATGAAAGTCTG +
Preference number: 2 (lower is better)
Translates to: YLGISMNNYMASQINTARQHFHV*RFHESL
Trigger: CAGACTTTCATGGAATCTTCAAACATGGAAATGCTG...CCTTGCAGTGTTTATTTGGGAAGCCATGTAGTTGTTCATAGATATACCTAGGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR TCA 90 bp ATCTTTCCAGAAGATTCCTGTGAACCGGGGCATAACTTGATGTTTAAGAAAATGTGTGTCAAGACAAATTaGTGTGGAATGGGATTCAGT +
Preference number: 2 (lower is better)
Translates to: IFPEDSCEPGHNLMFKKMCVKTN*CGMGFS
Trigger: ACTGAATCCCATTCCACATCAATTTGTCTTGACACA...CATTTTCTTAAACATCAAGTTATGCCCCGGTTCACAGGAATCTTCTGGAAAGAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR GCA 90 bp TCAGTTTGGGAGGTTTTGTTGTTGAAAGTCAATTGTTTCTCCCTACCCTTTCAGATGCAAACATGGAAATaGCTGGTTGTCATAGAAAGA +
Preference number: 2 (lower is better)
Translates to: SVWEVLLLKVNCFSLPFQMQTWK*LVVIER
Trigger: TCTTTCTATGACAACCAGGCATTTCCATGTTTGCAT...CTGAAAGGGTAGGGAGAAACAATTGACTTTCAACAACAAAACCTCCCAAACTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp TACCTAGGTATATCTATGAACAACTACATGGCTTCCCAAATAAACACTGCAAGGAATATGGCTGATGCTTaGCAGTCTGCAATAAAGTCA +
Preference number: 2 (lower is better)
Translates to: YLGISMNNYMASQINTARNMADA*QSAIKS
Trigger: TGACTTTATTGCAGACTGCCAAGCATCAGCCATATT...CCTTGCAGTGTTTATTTGGGAAGCCATGTAGTTGTTCATAGATATACCTAGGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 90 bp AAAGAACAAAACAAAGCAGGAACTAGCTCAGTTTGGGAGGTTTTGTaGTTGAAAGTCAATTGTTTCTCCCTACCCTTTCAGCTTAAACTA +
Preference number: 2 (lower is better)
Translates to: KEQNKAGTSSVWEVL*LKVNCFSLPFQLKL
Trigger: TAGTTTAAGCTGAAAGGGTAGGGAGAAACAATTGACTTTCAACAACAAAACCTCCCAAACTGAGCTAGTTCCTGCTTTGTTTTGTTCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 90 bp AGAAAAGAACAAAACAAAGCAGGAACTAGCTCAGTTTGGGAGGTTTaGTTGTTGAAAGTCAATTGTTTCTCCCTACCCTTTCAGCTTAAA +
Preference number: 2 (lower is better)
Translates to: RKEQNKAGTSSVWEV*LLKVNCFSLPFQLK
Trigger: TTTAAGCTGAAAGGGTAGGGAGAAACAATTGACTTTCAACAACAAAACCTCCCAAACTGAGCTAGTTCCTGCTTTGTTTTGTTCTTTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR TCA 90 bp ATCTTTCCAGAAGATTCCTGTGAACCGGGGCATAACTTGATGTTTAAGAAAATGGGGACTACAGGAAGTTaGAATTTCCAGAAATGTAAA +
Preference number: 2 (lower is better)
Translates to: IFPEDSCEPGHNLMFKKMGTTGS*NFQKCK
Trigger: TTTACATTTCTGGAAATTTCAACTTCCTGTAGTCCC...CATTTTCTTAAACATCAAGTTATGCCCCGGTTCACAGGAATCTTCTGGAAAGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR TCA 90 bp ATCTTTCCAGAAGATTCCTGTGAACCGGGGCATAACTTGATGTTTAAGAAAATGGTCCGTCATAAGAAATaGAAACATTGTAGTCACTTC +
Preference number: 2 (lower is better)
Translates to: IFPEDSCEPGHNLMFKKMVRHKK*KHCSHF
Trigger: GAAGTGACTACAATGTTTTCATTTCTTATGACGGAC...CATTTTCTTAAACATCAAGTTATGCCCCGGTTCACAGGAATCTTCTGGAAAGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CCA 90 bp ATCTTTCCAGAAGATTCCTGTGAACCGGGGCATAACTTGATGTTTAAGAAAATGATTAATTCAGCTTTGTaGGATAAAAGCACACCAGGA +
Preference number: 2 (lower is better)
Translates to: IFPEDSCEPGHNLMFKKMINSAL*DKSTPG
Trigger: TCCTGGTGTGCTTTTATCCCACAAAGCTGAATTAAT...CATTTTCTTAAACATCAAGTTATGCCCCGGTTCACAGGAATCTTCTGGAAAGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CCA 72 bp CAGAGGGCGGCCCAGCCACAAGGCTCAGGTGGCTTCTaGCTGGGTTTGGCCCTGAGGGCTCGGCGGGGTCGC +
Preference number: 3 (lower is better)
Translates to: QRAAQPQGSGGF*LGLALRARRGR
Trigger: GCGACCCCGCCGAGCCCTCAGGGCCAAACCCAGCCAGAAGCCACCTGAGCCTTGTGGCTGGGCCGCCCTCTG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CCA 72 bp GCAGGGCGCGGTGCCGCCGGGGTCGCCAAGGCACGTTaGGCACAAGGGCGCCCTCTCTTCACTAGGACACCA +
Preference number: 3 (lower is better)
Translates to: AGRGAAGVAKAR*AQGRPLFTRTP
Trigger: TGGTGTCCTAGTGAAGAGAGGGCGCCCTTGTGCCCAACGTGCCTTGGCGACCCCGGCGGCACCGCGCCCTGC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CCA 72 bp ACAAATACAGAGGGCGGCCCAGCCACAAGGCTCAGGTaGCTTCTGGCTGGGTTTGGCCCTGAGGGCTCGGCG +
Preference number: 3 (lower is better)
Translates to: TNTEGGPATRLR*LLAGFGPEGSA
Trigger: CGCCGAGCCCTCAGGGCCAAACCCAGCCAGAAGCCACCTGAGCCTTGTGGCTGGGCCGCCCTCTGTATTTGT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CAA 90 bp GCCGGGGTCGCCAAGGCACGTTGGGCACAAGGGCGCCCTCTCTTCACTAGGACATGGGCTGGGACAACCTaGTACTGTGCTTACAGATAT +
Preference number: 3 (lower is better)
Translates to: AGVAKARWAQGRPLFTRTWAGTT*YCAYRY
Trigger: ATATCTGTAAGCACAGTACAAGGTTGTCCCAGCCCA...TGTCCTAGTGAAGAGAGGGCGCCCTTGTGCCCAACGTGCCTTGGCGACCCCGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CAA 90 bp GCCGGGGTCGCCAAGGCACGTTGGGCACAAGGGCGCCCTCTCTTCACTAGGACATTCAGTTCAGGTGGCTaGCTTCTACTGTTTCCAGAT +
Preference number: 3 (lower is better)
Translates to: AGVAKARWAQGRPLFTRTFSSGG*LLLFPD
Trigger: ATCTGGAAACAGTAGAAGCAAGCCACCTGAACTGAA...TGTCCTAGTGAAGAGAGGGCGCCCTTGTGCCCAACGTGCCTTGGCGACCCCGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR TCA 72 bp CAAACAGATTCAAGAAGCCTGATGCCGCCAGGGCTCTaGAGTGATAGAATGGGGGTGCAACATCCGGGGACC +
Preference number: 3 (lower is better)
Translates to: QTDSRSLMPPGL*SDRMGVQHPGT
Trigger: GGTCCCCGGATGTTGCACCCCCATTCTATCACTTCAGAGCCCTGGCGGCATCAGGCTTCTTGAATCTGTTTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR GCA 72 bp AGCTTGGACAGGACAGGTCACCCTCCTCCCAGCCAATaGCCTCTACAGTCCTCACTTGCTCAGAACTGCTAT +
Preference number: 3 (lower is better)
Translates to: SLDRTGHPPPSQ*PLQSSLAQNCY
Trigger: ATAGCAGTTCTGAGCAAGTGAGGACTGTAGAGGGCATTGGCTGGGAGGAGGGTGACCTGTCCTGTCCAAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CCA 72 bp ATTGTGTGTGTGGCTTGCTCTCTGTCTTCAGTGTTGTaGGCACCTTCAGAGTGGGCCTGCCAAAGGCTGGAG +
Preference number: 3 (lower is better)
Translates to: IVCVACSLSSVL*APSEWACQRLE
Trigger: CTCCAGCCTTTGGCAGGCCCACTCTGAAGGTGCCCACAACACTGAAGACAGAGAGCAAGCCACACACACAAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CAA 90 bp GAGCAGAGGAAGGAGGATAGGGAATCCAAGTCTGTACTGAGTGCAAGGGCAAGAAGTCTCAGCCCCAGGTaGCTTTCTACAGTAGGGGCA +
Preference number: 3 (lower is better)
Translates to: EQRKEDRESKSVLSARARSLSPR*LSTVGA
Trigger: TGCCCCTACTGTAGAAAGCAACCTGGGGCTGAGACT...TCTTGCCCTTGCACTCAGTACAGACTTGGATTCCCTATCCTCCTTCCTCTGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR CCA 72 bp TGTTGTGGGCACCTTCAGAGTGGGCCTGCCAAAGGCTaGAGCTTCAGAGACACTAGAGCACTAGATGCAAAA +
Preference number: 3 (lower is better)
Translates to: CCGHLQSGPAKG*SFRDTRALDAK
Trigger: TTTTGCATCTAGTGCTCTAGTGTCTCTGAAGCTCCAGCCTTTGGCAGGCCCACTCTGAAGGTGCCCACAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CAA 90 bp GGAATCCAAATACAAATACAGAGGGCGGCCCAGCCACAAGGCTCAGGTGGCTTCTTGGTTGATCACTACTaGTCTGGGGACAGTGGAAAG +
Preference number: 3 (lower is better)
Translates to: GIQIQIQRAAQPQGSGGFLVDHY*SGDSGK
Trigger: CTTTCCACTGTCCCCAGACAAGTAGTGATCAACCAA...GAAGCCACCTGAGCCTTGTGGCTGGGCCGCCCTCTGTATTTGTATTTGGATTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CAA 90 bp AATGTACTGACATGGTACTTCAGTGGGCAGGGCAGCCAGGAGACATCAGGATCTCAGGTTAGAGGAGGCTaGAGTTTGTGTGCCCACACA +
Preference number: 3 (lower is better)
Translates to: NVLTWYFSGQGSQETSGSQVRGG*SLCAHT
Trigger: TGTGTGGGCACACAAACTCAAGCCTCCTCTAACCTG...AGATCCTGATGTCTCCTGGCTGCCCTGCCCACTGAAGTACCATGTCAGTACATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CAA 90 bp CCTGGGAGATTGTTCAGTAGGTGCAAGCACAACCCTACCAGAAGCACTCGCCTCAATTGTGTGTGTGGCTaGCTCTCTGTCTTCAGTGTT +
Preference number: 3 (lower is better)
Translates to: PGRLFSRCKHNPTRSTRLNCVCG*LSVFSV
Trigger: AACACTGAAGACAGAGAGCAAGCCACACACACAATT...GAGGCGAGTGCTTCTGGTAGGGTTGTGCTTGCACCTACTGAACAATCTCCCAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR GCA 72 bp GTAGATCCTGTGTGTACGGGCACTGGTCCCAAGCGATaGAAAAGGAAGATACACAATGGGGAGGATCTGAGA +
Preference number: 3 (lower is better)
Translates to: VDPVCTGTGPKR*KRKIHNGEDLR
Trigger: TCTCAGATCCTCCCCATTGTGTATCTTCCTTTTGCATCGCTTGGGACCAGTGCCCGTACACACAGGATCTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CAA 90 bp GCACTCTTTAGAGCAGGGACACAGTCTCAGCCCCAGGTTGCTTTCTACAGTAGGTTGATTCACCTCTGGTaGTCTCTTCTCTATTTCCCC +
Preference number: 3 (lower is better)
Translates to: ALFRAGTQSQPQVAFYSRLIHLW*SLLYFP
Trigger: GGGGAAATAGAGAAGAGACAACCAGAGGTGAATCAA...CCTACTGTAGAAAGCAACCTGGGGCTGAGACTGTGTCCCTGCTCTAAAGAGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR-3UTR CAA 90 bp TTTCCTAGCCCTTTGGATAGAGTGGACCTCTGCTTCCTAGCTGTGTCAAGACAAAGGCAACTGTGGGGTTaGTCTAAGGTAGCAGGGAGT +
Preference number: 3 (lower is better)
Translates to: FPSPLDRVDLCFLAVSRQRQLWG*SKVAGS
Trigger: ACTCCCTGCTACCTTAGACAAACCCCACAGTTGCCT...TTGTCTTGACACAGCTAGGAAGCAGAGGTCCACTCTATCCAAAGGGCTAGGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR GCA 72 bp TCTGAGCTGACAGTGTTTGCAATTGTGTGTGTGGCTTaGTCTCTGTCTTCAGTGTTGTGGGCACCTTCAGAG +
Preference number: 3 (lower is better)
Translates to: SELTVFAIVCVA*SLSSVLWAPSE
Trigger: CTCTGAAGGTGCCCACAACACTGAAGACAGAGAGCAAGCCACACACACAATTGCAAACACTGTCAGCTCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CAA 90 bp TGCTTGTCTGTCAGGTCCTGTGTCTTTGTGGATAGTAGCAGCCTGATCATAATGTGCACTACATGTTTCTaGGGGGAGGAGGCCTGCAAA +
Preference number: 3 (lower is better)
Translates to: CLSVRSCVFVDSSSLIIMCTTCF*GEEACK
Trigger: TTTGCAGGCCTCCTCCCCCAAGAAACATGTAGTGCA...CATTATGATCAGGCTGCTACTATCCACAAAGACACAGGACCTGACAGACAAGCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR-3UTR CAA 90 bp TTTCCTAGCCCTTTGGATAGAGTGGACCTCTGCTTCCTAGCTGTGTCAAGACAATGGAGTGCACAAGACTaGGAGTGCACAAGAGCATCT +
Preference number: 3 (lower is better)
Translates to: FPSPLDRVDLCFLAVSRQWSAQD*ECTRAS
Trigger: AGATGCTCTTGTGCACTCCAAGTCTTGTGCACTCCA...TTGTCTTGACACAGCTAGGAAGCAGAGGTCCACTCTATCCAAAGGGCTAGGAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR TCA 72 bp AGCAGAGGAAGGAGGATAGGGAATCCAAGTCTGTACTaGGTGCAAGGGCAAGAGCCTGTCAAGAAAACAAGT +
Preference number: 3 (lower is better)
Translates to: SRGRRIGNPSLY*VQGQEPVKKTS
Trigger: ACTTGTTTTCTTGACAGGCTCTTGCCCTTGCACTCAGTACAGACTTGGATTCCCTATCCTCCTTCCTCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR GCA 72 bp GTAGAACGCCGCTTCCAAACAAAGGCCTATCCACATTaGATGTGTTTGCAGGGTGAAGACAGTTACCGAATC +
Preference number: 3 (lower is better)
Translates to: VERRFQTKAYPH*MCLQGEDSYRI
Trigger: GATTCGGTAACTGTCTTCACCCTGCAAACACATGCAATGTGGATAGGCCTTTGTTTGGAAGCGGCGTTCTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR GCA 72 bp CAGGAAATAAATACTGGGTGGCATGCATTCCTCAAATaGTGGGAAACTCTGGAACCAGGGCAGATGGACTTC +
Preference number: 3 (lower is better)
Translates to: QEINTGWHAFLK*WETLEPGQMDF
Trigger: GAAGTCCATCTGCCCTGGTTCCAGAGTTTCCCAGCATTTGAGGAATGCATGCCACCCAGTATTTATTTCCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR GCA 72 bp AGCCAATGCCCTCTACAGTCCTCACTTGCTCAGAACTaGTATCAAAATGCTGTGGGATTCTGGAATCAGCCT +
Preference number: 3 (lower is better)
Translates to: SQCPLQSSLAQN*YQNAVGFWNQP
Trigger: AGGCTGATTCCAGAATCCCACAGCATTTTGATAGCAGTTCTGAGCAAGTGAGGACTGTAGAGGGCATTGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CCA 72 bp CTTGCTCAGAACTGCTATCAAAATGCTGTGGGATTCTaGAATCAGCCTACCTTAGGCTGTAGAGGTGGGAAG +
Preference number: 3 (lower is better)
Translates to: LAQNCYQNAVGF*NQPTLGCRGGK
Trigger: CTTCCCACCTCTACAGCCTAAGGTAGGCTGATTCCAGAATCCCACAGCATTTTGATAGCAGTTCTGAGCAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CAA 90 bp GGAATCCAAATACAAATACAGAGGGCGGCCCAGCCACAAGGCTCAGGTGGCTTCACATTTTTCTGTGAATaGGTATTCTGTTTGCTGCCT +
Preference number: 3 (lower is better)
Translates to: GIQIQIQRAAQPQGSGGFTFFCE*VFCLLP
Trigger: AGGCAGCAAACAGAATACCAATTCACAGAAAAATGT...GAAGCCACCTGAGCCTTGTGGCTGGGCCGCCCTCTGTATTTGTATTTGGATTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CAA 90 bp GGAATCCAAATACAAATACAGAGGGCGGCCCAGCCACAAGGCTCAGGTGGCTTCCAAAGCTGTTATTACTaGTCCCTGACAATACCAATT +
Preference number: 3 (lower is better)
Translates to: GIQIQIQRAAQPQGSGGFQSCYY*SLTIPI
Trigger: AATTGGTATTGTCAGGGACAAGTAATAACAGCTTTG...GAAGCCACCTGAGCCTTGTGGCTGGGCCGCCCTCTGTATTTGTATTTGGATTCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CAA 90 bp GAGCAGAGGAAGGAGGATAGGGAATCCAAGTCTGTACTGAGTGCAAGGGCAAGAAGTCCCTTTTCCCTCTaGAAATGGATCTTATTCTTG +
Preference number: 3 (lower is better)
Translates to: EQRKEDRESKSVLSARARSPFSL*KWILFL
Trigger: CAAGAATAAGATCCATTTCAAGAGGGAAAAGGGACT...TCTTGCCCTTGCACTCAGTACAGACTTGGATTCCCTATCCTCCTTCCTCTGCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR GCA 72 bp GTCACCAATAGAGGATGCTTCAAAAGAGTCATGGAGTaGACAAGACTTGGAGTGCACAAGAGCATCTGGTCA +
Preference number: 3 (lower is better)
Translates to: VTNRGCFKRVME*TRLGVHKSIWS
Trigger: TGACCAGATGCTCTTGTGCACTCCAAGTCTTGTGCACTCCATGACTCTTTTGAAGCATCCTCTATTGGTGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR GCA 72 bp TCTACAGTCCTCACTTGCTCAGAACTGCTATCAAAATaGTGTGGGATTCTGGAATCAGCCTACCTTAGGCTG +
Preference number: 3 (lower is better)
Translates to: STVLTCSELLSK*CGILESAYLRL
Trigger: CAGCCTAAGGTAGGCTGATTCCAGAATCCCACAGCATTTTGATAGCAGTTCTGAGCAAGTGAGGACTGTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CCA 72 bp AATGAACACTGGCTTGGTTATGTAAATGTACTGACATaGTACTTCAGTGGGCAGGGCAGCCAGGAGACATCA +
Preference number: 3 (lower is better)
Translates to: NEHWLGYVNVLT*YFSGQGSQETS
Trigger: TGATGTCTCCTGGCTGCCCTGCCCACTGAAGTACCATGTCAGTACATTTACATAACCAAGCCAGTGTTCATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR TCA 72 bp AGCAGACTCATTCACACATTAAGAACTCAGCCTGTTTaGGGAGAAAATCAGAAGGTGGACCCATGTCACCCT +
Preference number: 3 (lower is better)
Translates to: SRLIHTLRTQPV*GENQKVDPCHP
Trigger: AGGGTGACATGGGTCCACCTTCTGATTTTCTCCTCAAACAGGCTGAGTTCTTAATGTGTGAATGAGTCTGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR GCA 72 bp CAAATTGATGTGGAATGGGATTCAGTTCAGGTGGCTTaGTTCTACTGTTTCCAGATGTGGCATTGTGTAGGG +
Preference number: 3 (lower is better)
Translates to: QIDVEWDSVQVA*FYCFQMWHCVG
Trigger: CCCTACACAATGCCACATCTGGAAACAGTAGAAGCAAGCCACCTGAACTGAATCCCATTCCACATCAATTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR GCA 72 bp CACCCAAGAAACTTGGTGGTGCTTACATGTTCTCCATaGCAGCTTCTGATCAGGCATCTCATCTTGATTTGT +
Preference number: 3 (lower is better)
Translates to: HPRNLVVLTCSP*QLLIRHLILIC
Trigger: ACAAATCAAGATGAGATGCCTGATCAGAAGCTGGCATGGAGAACATGTAAGCACCACCAAGTTTCTTGGGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CCA 72 bp TGGTTGTCACCAATAGAGGATGCTTCAAAAGAGTCATaGAGTGCACAAGACTTGGAGTGCACAAGAGCATCT +
Preference number: 3 (lower is better)
Translates to: WLSPIEDASKES*SAQDLECTRAS
Trigger: AGATGCTCTTGTGCACTCCAAGTCTTGTGCACTCCATGACTCTTTTGAAGCATCCTCTATTGGTGACAACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CCA 72 bp TCAGTTCAGGTGGCTTGCTTCTACTGTTTCCAGATGTaGCATTGTGTAGGGCTACAACACGCATCTAAACAT +
Preference number: 3 (lower is better)
Translates to: SVQVACFYCFQM*HCVGLQHASKH
Trigger: ATGTTTAGATGCGTGTTGTAGCCCTACACAATGCCACATCTGGAAACAGTAGAAGCAAGCCACCTGAACTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CCA 72 bp CTGTCTGTCCTGAGCACTTCATTAGCATTCAGTTCTTaGACCACGATTAGTCTTAGACCCACTGGTTATCAC +
Preference number: 3 (lower is better)
Translates to: LSVLSTSLAFSS*TTISLRPTGYH
Trigger: GTGATAACCAGTGGGTCTAAGACTAATCGTGGTCCAAGAACTGAATGCTAATGAAGTGCTCAGGACAGACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CAA 90 bp CAGACCACCACCCAAGCAATTCCCCAGATCTTCACACGAAGGAAACAAAGCAGAATATCAAACTATGGGTaGAAGAAGGGATTAGCAAGA +
Preference number: 3 (lower is better)
Translates to: QTTTQAIPQIFTRRKQSRISNYG*KKGLAR
Trigger: TCTTGCTAATCCCTTCTTCAACCCATAGTTTGATAT...TCTGCTTTGTTTCCTTCGTGTGAAGATCTGGGGAATTGCTTGGGTGGTGGTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR TCA 72 bp GTGTGTTGGCTCTTCCTATGTTTTGATCAGCATGGCTaGGGTTGGGCAAGAGACAATGACAATGACAAGTTT +
Preference number: 3 (lower is better)
Translates to: VCWLFLCFDQHG*GWARDNDNDKF
Trigger: AAACTTGTCATTGTCATTGTCTCTTGCCCAACCTCAGCCATGCTGATCAAAACATAGGAAGAGCCAACACAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CCA 72 bp CACTGGTCCCAAGCGATGCAAAAGGAAGATACACAATaGGGAGGATCTGAGACAATGTCTAGATATTGGTTT +
Preference number: 3 (lower is better)
Translates to: HWSQAMQKEDTQ*GGSETMSRYWF
Trigger: AAACCAATATCTAGACATTGTCTCAGATCCTCCCCATTGTGTATCTTCCTTTTGCATCGCTTGGGACCAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CCA 72 bp AACAGTGCCAAGACCCTGCTAATGAGTGGAAATGTGTaGTTGTCACCAATAGAGGATGCTTCAAAAGAGTCA +
Preference number: 3 (lower is better)
Translates to: NSAKTLLMSGNV*LSPIEDASKES
Trigger: TGACTCTTTTGAAGCATCCTCTATTGGTGACAACCACACATTTCCACTCATTAGCAGGGTCTTGGCACTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CCA 72 bp CAAGACAAATTGATGTGGAATGGGATTCAGTTCAGGTaGCTTGCTTCTACTGTTTCCAGATGTGGCATTGTG +
Preference number: 3 (lower is better)
Translates to: QDKLMWNGIQFR*LASTVSRCGIV
Trigger: CACAATGCCACATCTGGAAACAGTAGAAGCAAGCCACCTGAACTGAATCCCATTCCACATCAATTTGTCTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CAA 90 bp AACCAGGAAATAAATACTGGGTGGCATGCATTCCTCAAATGCTGGGAAACTCTGCTGTGTCAAGACAAATaGATGTGGAATGGGATTCAG +
Preference number: 3 (lower is better)
Translates to: NQEINTGWHAFLKCWETLLCQDK*MWNGIQ
Trigger: CTGAATCCCATTCCACATCAATTTGTCTTGACACAG...CAGAGTTTCCCAGCATTTGAGGAATGCATGCCACCCAGTATTTATTTCCTGGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR TCA 72 bp ATCACTGTGTGTTCATGCCTAATCACACAAAGTGGGTaGCTAGCTGTTAGGGAGTACACCATAGAAGTTAGA +
Preference number: 3 (lower is better)
Translates to: ITVCSCLITQSG*LAVREYTIEVR
Trigger: TCTAACTTCTATGGTGTACTCCCTAACAGCTAGTCACCCACTTTGTGTGATTAGGCATGAACACACAGTGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR TCA 72 bp CACGCTAGGTACAGAGACAAAAGTGGTTGGCATTCTTaGTGGTGGTTGAAATCACAGATACAGAATACATGG +
Preference number: 3 (lower is better)
Translates to: HARYRDKSGWHS*WWLKSQIQNTW
Trigger: CCATGTATTCTGTATCTGTGATTTCAACCACCATCAAGAATGCCAACCACTTTTGTCTCTGTACCTAGCGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR GCA 72 bp AATGAGTGGAAATGTGTGGTTGTCACCAATAGAGGATaGTTCAAAAGAGTCATGGAGTGCACAAGACTTGGA +
Preference number: 3 (lower is better)
Translates to: NEWKCVVVTNRG*FKRVMECTRLG
Trigger: TCCAAGTCTTGTGCACTCCATGACTCTTTTGAAGCATCCTCTATTGGTGACAACCACACATTTCCACTCATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CAA 90 bp TACCTAGGTATATCTATGAACAACTACATGGCTTCCCAAATAAACACTGCAAGGCCACATTGCATGTGTTaGCAGGGTGAAGACAGTTAC +
Preference number: 3 (lower is better)
Translates to: YLGISMNNYMASQINTARPHCMC*QGEDSY
Trigger: GTAACTGTCTTCACCCTGCAAACACATGCAATGTGG...CCTTGCAGTGTTTATTTGGGAAGCCATGTAGTTGTTCATAGATATACCTAGGTA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CAA 90 bp TCAGTTTGGGAGGTTTTGTTGTTGAAAGTCAATTGTTTCTCCCTACCCTTTCAGAAAAGCACACCAGGATaGTACTGTGGATGCCATAAC +
Preference number: 3 (lower is better)
Translates to: SVWEVLLLKVNCFSLPFQKSTPG*YCGCHN
Trigger: GTTATGGCATCCACAGTACAATCCTGGTGTGCTTTT...CTGAAAGGGTAGGGAGAAACAATTGACTTTCAACAACAAAACCTCCCAAACTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CAA 90 bp AACCAGGAAATAAATACTGGGTGGCATGCATTCCTCAAATGCTGGGAAACTCTGGAATTGGTATTCTGTTaGCTGCCTTCCTATTTCCAA +
Preference number: 3 (lower is better)
Translates to: NQEINTGWHAFLKCWETLELVFC*LPSYFQ
Trigger: TTGGAAATAGGAAGGCAGCAAACAGAATACCAATTC...CAGAGTTTCCCAGCATTTGAGGAATGCATGCCACCCAGTATTTATTTCCTGGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR TCA 72 bp ATTCTTGTAATGTATCAAAGTATATTGGCAAATGCCTaGACATCAGTCCTTCAGGGAGCAGAGGAAGGAGGA +
Preference number: 3 (lower is better)
Translates to: ILVMYQSILANA*TSVLQGAEEGG
Trigger: TCCTCCTTCCTCTGCTCCCTGAAGGACTGATGTTCAGGCATTTGCCAATATACTTTGATACATTACAAGAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR TCA 72 bp TTGAACTTTACTGAGAAACAGGCATTGGCATACTCGTaGCATGTGTGTTGGCTCTTCCTATGTTTTGATCAG +
Preference number: 3 (lower is better)
Translates to: LNFTEKQALAYS*HVCWLFLCFDQ
Trigger: CTGATCAAAACATAGGAAGAGCCAACACACATGTCACGAGTATGCCAATGCCTGTTTCTCAGTAAAGTTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR TCA 72 bp AAGCAGGAACTAGCTCAGTTTGGGAGGTTTTGTTGTTaGAAGTCAATTGTTTCTCCCTACCCTTTCAGCTTA +
Preference number: 3 (lower is better)
Translates to: KQELAQFGRFCC*KSIVSPYPFSL
Trigger: TAAGCTGAAAGGGTAGGGAGAAACAATTGACTTTCAACAACAAAACCTCCCAAACTGAGCTAGTTCCTGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR TCA 72 bp ACAGAGACAAAAGTGGTTGGCATTCTTGATGGTGGTTaGAATCACAGATACAGAATACATGGATCCAGAAGC +
Preference number: 3 (lower is better)
Translates to: TETKVVGILDGG*NHRYRIHGSRS
Trigger: GCTTCTGGATCCATGTATTCTGTATCTGTGATTTCAACCACCATCAAGAATGCCAACCACTTTTGTCTCTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CAA 90 bp TACCTAGGTATATCTATGAACAACTACATGGCTTCCCAAATAAACACTGCAAGGAGAAGCCGACTGTACTaGTTCAGAGAAATACAGAGA +
Preference number: 3 (lower is better)
Translates to: YLGISMNNYMASQINTARRSRLY*FREIQR
Trigger: TCTCTGTATTTCTCTGAACAAGTACAGTCGGCTTCT...CCTTGCAGTGTTTATTTGGGAAGCCATGTAGTTGTTCATAGATATACCTAGGTA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR TCA 72 bp TGTGTGTGTGTGTGTGTGTGTGTGTGCACATGTGAGTaGGTGTGTGTGAGTGAAATATTTATAAGGAATACT +
Preference number: 3 (lower is better)
Translates to: CVCVCVCVCTCE*VCVSEIFIRNT
Trigger: AGTATTCCTTATAAATATTTCACTCACACACACTCACTCACATGTGCACACACACACACACACACACACACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR TCA 72 bp CACAAACACACAGACAGCCATTATTACCCTTACAAATaGGAGGTGTGTCCGTTTTCACATCTACTTCATCTA +
Preference number: 3 (lower is better)
Translates to: HKHTDSHYYPYK*EVCPFSHLLHL
Trigger: TAGATGAAGTAGATGTGAAAACGGACACACCTCTCATTTGTAAGGGTAATAATGGCTGTCTGTGTGTTTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR TCA 72 bp TTAAAGCATGTGATCCCATATTTTGGGGAAATACAATaGTTGTCTCTTACTCTATCTGGGCCCTTCTCTTCC +
Preference number: 3 (lower is better)
Translates to: LKHVIPYFGEIQ*LSLTLSGPFSS
Trigger: GGAAGAGAAGGGCCCAGATAGAGTAAGAGACAATCATTGTATTTCCCCAAAATATGGGATCACATGCTTTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CAA 90 bp TACCTAGGTATATCTATGAACAACTACATGGCTTCCCAAATAAACACTGCAAGGAGACAAACAGCAGTCTaGGTCTCAGGAACAATTTTT +
Preference number: 3 (lower is better)
Translates to: YLGISMNNYMASQINTARRQTAV*VSGTIF
Trigger: AAAAATTGTTCCTGAGACCAAGACTGCTGTTTGTCT...CCTTGCAGTGTTTATTTGGGAAGCCATGTAGTTGTTCATAGATATACCTAGGTA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CAA 90 bp TCAGTTTGGGAGGTTTTGTTGTTGAAAGTCAATTGTTTCTCCCTACCCTTTCAGGACCTTTCCATATCATaGTGTTCTAAAGTTCCAAAC +
Preference number: 3 (lower is better)
Translates to: SVWEVLLLKVNCFSLPFQDLSIS*CSKVPN
Trigger: GTTTGGAACTTTAGAACACAATGATATGGAAAGGTC...CTGAAAGGGTAGGGAGAAACAATTGACTTTCAACAACAAAACCTCCCAAACTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR-3UTR CAA 90 bp TACCTAGGTATATCTATGAACAACTACATGGCTTCCCAAATAAACACTGCAAGGGTTGTTGAAAGTCAATaGTTTCTCCCTACCCTTTCA +
Preference number: 3 (lower is better)
Translates to: YLGISMNNYMASQINTARVVESQ*FLPTLS
Trigger: TGAAAGGGTAGGGAGAAACAATTGACTTTCAACAAC...CCTTGCAGTGTTTATTTGGGAAGCCATGTAGTTGTTCATAGATATACCTAGGTA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR GCA 72 bp AAAAATTCTTGTAATGTATCAAAGTATATTGGCAAATaGCTGAACATCAGTCCTTCAGGGAGCAGAGGAAGG +
Preference number: 3 (lower is better)
Translates to: KNSCNVSKYIGK*LNISPSGSRGR
Trigger: CCTTCCTCTGCTCCCTGAAGGACTGATGTTCAGGCATTTGCCAATATACTTTGATACATTACAAGAATTTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR-3UTR CAA 90 bp TACCTAGGTATATCTATGAACAACTACATGGCTTCCCAAATAAACACTGCAAGGTCAGTTTGGGAGGTTTaGTTGTTGAAAGTCAATTGT +
Preference number: 3 (lower is better)
Translates to: YLGISMNNYMASQINTARSVWEV*LLKVNC
Trigger: ACAATTGACTTTCAACAACAAAACCTCCCAAACTGA...CCTTGCAGTGTTTATTTGGGAAGCCATGTAGTTGTTCATAGATATACCTAGGTA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR GCA 72 bp ATCTATGAACAACTACATGGCTTCCCAAATAAACACTaGAAGGCCAGTGTACCATATAACTATCAAGAAGTA +
Preference number: 3 (lower is better)
Translates to: IYEQLHGFPNKH*KASVPYNYQEV
Trigger: TACTTCTTGATAGTTATATGGTACACTGGCCTTGCAGTGTTTATTTGGGAAGCCATGTAGTTGTTCATAGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CCA 72 bp TGTGTGTGTAAGTATTCTAGTTCACATAACCTAACCTaGTTAACTCAAAGCATGGGAAACTTTCTAATGACC +
Preference number: 3 (lower is better)
Translates to: CVCKYSSSHNLT*LTQSMGNFLMT
Trigger: GGTCATTAGAAAGTTTCCCATGCTTTGAGTTAACCAGGTTAGGTTATGTGAACTAGAATACTTACACACACA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR GCA 90 bp GCCGGGGTCGCCAAGGCACGTTGGGCACAAGGGCGCCCTCTCTTCACTAGGACACTCCTGGACCGAGCATaGAAGCCCGAGAACAGGCAG +
Preference number: 4 (lower is better)
Translates to: AGVAKARWAQGRPLFTRTLLDRA*KPENRQ
Trigger: CTGCCTGTTCTCGGGCTTGCATGCTCGGTCCAGGAG...TGTCCTAGTGAAGAGAGGGCGCCCTTGTGCCCAACGTGCCTTGGCGACCCCGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR CCA 90 bp GTCGCCAAGGCACGTTGGGCACAAGGGCGCCCTCTCTTCACTAGGACACCACGACGTGATCATCACAGGTaGTGGGGGCCTCATGTCCAG +
Preference number: 4 (lower is better)
Translates to: VAKARWAQGRPLFTRTPRRDHHR*WGPHVQ
Trigger: CTGGACATGAGGCCCCCACCACCTGTGATGATCACG...TCGTGGTGTCCTAGTGAAGAGAGGGCGCCCTTGTGCCCAACGTGCCTTGGCGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 72 bp AGAGGGCCCTCGAGGACAGCAGGACATCCAGTGCTCTaGCAAGCCACTGGTGTGAGGCCAGCCTCTGACCAT +
Preference number: 4 (lower is better)
Translates to: RGPSRTAGHPVL*QATGVRPASDH
Trigger: ATGGTCAGAGGCTGGCCTCACACCAGTGGCTTGCAAGAGCACTGGATGTCCTGCTGTCCTCGAGGGCCCTCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR GCA 90 bp GCCGGGGTCGCCAAGGCACGTTGGGCACAAGGGCGCCCTCTCTTCACTAGGACAAGCTCTGGCAGTCTTTaGCATCCAGACACTCATAGA +
Preference number: 4 (lower is better)
Translates to: AGVAKARWAQGRPLFTRTSSGSL*HPDTHR
Trigger: TCTATGAGTGTCTGGATGGCAAAGACTGCCAGAGCT...TGTCCTAGTGAAGAGAGGGCGCCCTTGTGCCCAACGTGCCTTGGCGACCCCGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR GCA 90 bp GTCGCCAAGGCACGTTGGGCACAAGGGCGCCCTCTCTTCACTAGGACACCACGATCCAGGAGCCAGACTTaGACTCCTCATAGCAGCAGA +
Preference number: 4 (lower is better)
Translates to: VAKARWAQGRPLFTRTPRSRSQT*TPHSSR
Trigger: TCTGCTGCTATGAGGAGTGCAAGTCTGGCTCCTGGA...TCGTGGTGTCCTAGTGAAGAGAGGGCGCCCTTGTGCCCAACGTGCCTTGGCGAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR TCA 90 bp GCCGCTTCCAAACAAAGGCCTATCCACATTGCATGTGTTTGCAGGGTGAAGACAGCTGGTTGGGTGTGGTaGTCCAGTGAGCCTCCGCTG +
Preference number: 4 (lower is better)
Translates to: AASKQRPIHIACVCRVKTAGWVW*SSEPPL
Trigger: CAGCGGAGGCTCACTGGATCACCACACCCAACCAGC...TGTCTTCACCCTGCAAACACATGCAATGTGGATAGGCCTTTGTTTGGAAGCGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR GCA 90 bp GAGCAGAGGAAGGAGGATAGGGAATCCAAGTCTGTACTGAGTGCAAGGGCAAGACTCCTGGACCGAGCATaGAAGCCCGAGAACAGGCAG +
Preference number: 4 (lower is better)
Translates to: EQRKEDRESKSVLSARARLLDRA*KPENRQ
Trigger: CTGCCTGTTCTCGGGCTTGCATGCTCGGTCCAGGAG...TCTTGCCCTTGCACTCAGTACAGACTTGGATTCCCTATCCTCCTTCCTCTGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR CAA 72 bp GCAATTGTGTGTGTGGCTTGCTCTCTGTCTTCAGTGTaGTGGGCACCTTCAGAGTGGGCCTGCCAAAGGCTG +
Preference number: 4 (lower is better)
Translates to: AIVCVACSLSSV*WAPSEWACQRL
Trigger: CAGCCTTTGGCAGGCCCACTCTGAAGGTGCCCACAACACTGAAGACAGAGAGCAAGCCACACACACAATTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR CCA 90 bp GGAATCCAAATACAAATACAGAGGGCGGCCCAGCCACAAGGCTCAGGTGGCTTCCAGATTCTGAGGAGCTaGTTGGGTGTGGTGATCCAG +
Preference number: 4 (lower is better)
Translates to: GIQIQIQRAAQPQGSGGFQILRS*LGVVIQ
Trigger: CTGGATCACCACACCCAACCAGCTCCTCAGAATCTG...GAAGCCACCTGAGCCTTGTGGCTGGGCCGCCCTCTGTATTTGTATTTGGATTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR TCA 90 bp CCTGGGAGATTGTTCAGTAGGTGCAAGCACAACCCTACCAGAAGCACTCGCCTCTACATCGGTGTCTTGTaGTTTGGGTGCCAAGACCCA +
Preference number: 4 (lower is better)
Translates to: PGRLFSRCKHNPTRSTRLYIGVL*FGCQDP
Trigger: TGGGTCTTGGCACCCAAATCACAAGACACCGATGTA...GAGGCGAGTGCTTCTGGTAGGGTTGTGCTTGCACCTACTGAACAATCTCCCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR TCA 90 bp CCTGGGAGATTGTTCAGTAGGTGCAAGCACAACCCTACCAGAAGCACTCGCCTCAGCCGCCATGATTTCTaGTCAGCTGCCTCAACTGAA +
Preference number: 4 (lower is better)
Translates to: PGRLFSRCKHNPTRSTRLSRHDF*SAASTE
Trigger: TTCAGTTGAGGCAGCTGATCAGAAATCATGGCGGCT...GAGGCGAGTGCTTCTGGTAGGGTTGTGCTTGCACCTACTGAACAATCTCCCAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR TCA 90 bp GCACTCTTTAGAGCAGGGACACAGTCTCAGCCCCAGGTTGCTTTCTACAGTAGGTACATCGGTGTCTTGTaGTTTGGGTGCCAAGACCCA +
Preference number: 4 (lower is better)
Translates to: ALFRAGTQSQPQVAFYSRYIGVL*FGCQDP
Trigger: TGGGTCTTGGCACCCAAATCACAAGACACCGATGTA...CCTACTGTAGAAAGCAACCTGGGGCTGAGACTGTGTCCCTGCTCTAAAGAGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
CDS-3UTR TCA 90 bp AATGTACTGACATGGTACTTCAGTGGGCAGGGCAGCCAGGAGACATCAGGATCTCTGATAGAGCCGCCATaGTTTCTGATCAGCTGCCTC +
Preference number: 4 (lower is better)
Translates to: NVLTWYFSGQGSQETSGSLIEPP*FLISCL
Trigger: GAGGCAGCTGATCAGAAATCATGGCGGCTCTATCAG...AGATCCTGATGTCTCCTGGCTGCCCTGCCCACTGAAGTACCATGTCAGTACATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR TCA 90 bp GACCACCACCCAAGCAATTCCCCAGATCTTCACACGAAGGAAACAAAGCAGAATAGAGGTCCATGGCAGTaGCATAGGACACCCGAGGCA +
Preference number: 4 (lower is better)
Translates to: DHHPSNSPDLHTKETKQNRGPWQ*HRTPEA
Trigger: TGCCTCGGGTGTCCTATGTCACTGCCATGGACCTCT...ATTCTGCTTTGTTTCCTTCGTGTGAAGATCTGGGGAATTGCTTGGGTGGTGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR GCA 90 bp AATGTACTGACATGGTACTTCAGTGGGCAGGGCAGCCAGGAGACATCAGGATCTGTCAAGGGGCAGGCATaGGCATCCATAGGGAAGTTA +
Preference number: 4 (lower is better)
Translates to: NVLTWYFSGQGSQETSGSVKGQA*ASIGKL
Trigger: TAACTTCCCTATGGATGCGCATGCCTGCCCCTTGAC...AGATCCTGATGTCTCCTGGCTGCCCTGCCCACTGAAGTACCATGTCAGTACATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR TCA 90 bp GCCGCTTCCAAACAAAGGCCTATCCACATTGCATGTGTTTGCAGGGTGAAGACACCCAATAGACCAGGTTaGACAGCAGGAAGGATGTCG +
Preference number: 4 (lower is better)
Translates to: AASKQRPIHIACVCRVKTPNRPG*TAGRMS
Trigger: CGACATCCTTCCTGCTGTTCAACCTGGTCTATTGGG...TGTCTTCACCCTGCAAACACATGCAATGTGGATAGGCCTTTGTTTGGAAGCGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 72 bp ACCCTCCTCCCAGCCAATGCCCTCTACAGTCCTCACTaGCTCAGAACTGCTATCAAAATGCTGTGGGATTCT +
Preference number: 4 (lower is better)
Translates to: TLLPANALYSPH*LRTAIKMLWDS
Trigger: AGAATCCCACAGCATTTTGATAGCAGTTCTGAGCAAGTGAGGACTGTAGAGGGCATTGGCTGGGAGGAGGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR TCA 90 bp GACCACCACCCAAGCAATTCCCCAGATCTTCACACGAAGGAAACAAAGCAGAATCATCATTCCAGATTCTaGGGAGCTGGTTGGGTGTGG +
Preference number: 4 (lower is better)
Translates to: DHHPSNSPDLHTKETKQNHHSRF*GAGWVW
Trigger: CCACACCCAACCAGCTCCTCAGAATCTGGAATGATG...ATTCTGCTTTGTTTCCTTCGTGTGAAGATCTGGGGAATTGCTTGGGTGGTGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR GCA 90 bp AATGTACTGACATGGTACTTCAGTGGGCAGGGCAGCCAGGAGACATCAGGATCTTCCATAGGGAAGTTATaGAGTTGCAGCTGGCACTCT +
Preference number: 4 (lower is better)
Translates to: NVLTWYFSGQGSQETSGSSIGKL*SCSWHS
Trigger: AGAGTGCCAGCTGCAACTGCATAACTTCCCTATGGA...AGATCCTGATGTCTCCTGGCTGCCCTGCCCACTGAAGTACCATGTCAGTACATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 72 bp CGCAGTGAAGACCATGATGTGGCAAAGACATTCCCTTaGTTTAATGTCATCCCTGGGCACTCATCCCAGCTC +
Preference number: 4 (lower is better)
Translates to: RSEDHDVAKTFP*FNVIPGHSSQL
Trigger: GAGCTGGGATGAGTGCCCAGGGATGACATTAAACAAAGGGAATGTCTTTGCCACATCATGGTCTTCACTGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
CDS-3UTR GCA 90 bp GCCGCTTCCAAACAAAGGCCTATCCACATTGCATGTGTTTGCAGGGTGAAGACAGAACCACAGTCAGTATaGAGGGGATATACGTCTGGA +
Preference number: 4 (lower is better)
Translates to: AASKQRPIHIACVCRVKTEPQSV*RGYTSG
Trigger: TCCAGACGTATATCCCCTGCATACTGACTGTGGTTC...TGTCTTCACCCTGCAAACACATGCAATGTGGATAGGCCTTTGTTTGGAAGCGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR CCA 90 bp GACCACCACCCAAGCAATTCCCCAGATCTTCACACGAAGGAAACAAAGCAGAATCGGTGTCTTGTGATTTaGGTGCCAAGACCCACTTCT +
Preference number: 4 (lower is better)
Translates to: DHHPSNSPDLHTKETKQNRCLVI*VPRPTS
Trigger: AGAAGTGGGTCTTGGCACCCAAATCACAAGACACCG...ATTCTGCTTTGTTTCCTTCGTGTGAAGATCTGGGGAATTGCTTGGGTGGTGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR TCA 90 bp CAGACCACCACCCAAGCAATTCCCCAGATCTTCACACGAAGGAAACAAAGCAGATTTTCATTGTGCTGTTaGATCGAAGGCGACTGTCTG +
Preference number: 4 (lower is better)
Translates to: QTTTQAIPQIFTRRKQSRFSLCC*IEGDCL
Trigger: CAGACAGTCGCCTTCGATTCAACAGCACAATGAAAA...TCTGCTTTGTTTCCTTCGTGTGAAGATCTGGGGAATTGCTTGGGTGGTGGTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR TCA 90 bp GACCACCACCCAAGCAATTCCCCAGATCTTCACACGAAGGAAACAAAGCAGAATTGGAATTGTTTAACGTaGTCATCACAGGTGGTGGGG +
Preference number: 4 (lower is better)
Translates to: DHHPSNSPDLHTKETKQNWNCLT*SSQVVG
Trigger: CCCCACCACCTGTGATGATCACGTTAAACAATTCCA...ATTCTGCTTTGTTTCCTTCGTGTGAAGATCTGGGGAATTGCTTGGGTGGTGGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR CCA 90 bp TGCTTGTCTGTCAGGTCCTGTGTCTTTGTGGATAGTAGCAGCCTGATCATAATGCGGTGTCTTGTGATTTaGGTGCCAAGACCCACTTCT +
Preference number: 4 (lower is better)
Translates to: CLSVRSCVFVDSSSLIIMRCLVI*VPRPTS
Trigger: AGAAGTGGGTCTTGGCACCCAAATCACAAGACACCG...CATTATGATCAGGCTGCTACTATCCACAAAGACACAGGACCTGACAGACAAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
CDS-3UTR CCA 90 bp CAGACCACCACCCAAGCAATTCCCCAGATCTTCACACGAAGGAAACAAAGCAGATCGAAAGATGGTGTCTaGAATCCATATCAAGCCCAC +
Preference number: 4 (lower is better)
Translates to: QTTTQAIPQIFTRRKQSRSKDGV*NPYQAH
Trigger: GTGGGCTTGATATGGATTCCAGACACCATCTTTCGA...TCTGCTTTGTTTCCTTCGTGTGAAGATCTGGGGAATTGCTTGGGTGGTGGTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR TCA 90 bp TGCTTGTCTGTCAGGTCCTGTGTCTTTGTGGATAGTAGCAGCCTGATCATAATGGAGCATGTTTATGGATaGCACAGGACCAATGCTGTT +
Preference number: 4 (lower is better)
Translates to: CLSVRSCVFVDSSSLIIMEHVYG*HRTNAV
Trigger: AACAGCATTGGTCCTGTGTCATCCATAAACATGCTC...CATTATGATCAGGCTGCTACTATCCACAAAGACACAGGACCTGACAGACAAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
CDS-3UTR CCA 90 bp CAAGTCTGTACTGAGTGCAAGGGCAAGAGCCTGTCAAGAAAACAAGTAAAAATGGCCAAGACCCACTTCTaGTTTGATGGGGAGTCTTCA +
Preference number: 4 (lower is better)
Translates to: QVCTECKGKSLSRKQVKMAKTHF*FDGESS
Trigger: TGAAGACTCCCCATCAAACCAGAAGTGGGTCTTGGC...CATTTTTACTTGTTTTCTTGACAGGCTCTTGCCCTTGCACTCAGTACAGACTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR CAA 72 bp TGTCTAGATATTGGTTTGCATCTTTCACAGGGGTCGTaGCATGATAACTGGCAGCTTCTGTATCCAAGGCCA +
Preference number: 4 (lower is better)
Translates to: CLDIGLHLSQGS*HDNWQLLYPRP
Trigger: TGGCCTTGGATACAGAAGCTGCCAGTTATCATGCAACGACCCCTGTGAAAGATGCAAACCAATATCTAGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 72 bp CGCTTCCAAACAAAGGCCTATCCACATTGCATGTGTTaGCAGGGTGAAGACAGTTACCGAATCCCTAACATA +
Preference number: 4 (lower is better)
Translates to: RFQTKAYPHCMC*QGEDSYRIPNI
Trigger: TATGTTAGGGATTCGGTAACTGTCTTCACCCTGCAAACACATGCAATGTGGATAGGCCTTTGTTTGGAAGCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 72 bp AGTGCCAAGACCCTGCTAATGAGTGGAAATGTGTGGTaGTCACCAATAGAGGATGCTTCAAAAGAGTCATGG +
Preference number: 4 (lower is better)
Translates to: SAKTLLMSGNVW*SPIEDASKESW
Trigger: CCATGACTCTTTTGAAGCATCCTCTATTGGTGACAACCACACATTTCCACTCATTAGCAGGGTCTTGGCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 72 bp AAGCAGACTCATTCACACATTAAGAACTCAGCCTGTTaGAGGAGAAAATCAGAAGGTGGACCCATGTCACCC +
Preference number: 4 (lower is better)
Translates to: KQTHSHIKNSAC*RRKSEGGPMSP
Trigger: GGGTGACATGGGTCCACCTTCTGATTTTCTCCTCAAACAGGCTGAGTTCTTAATGTGTGAATGAGTCTGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR TCA 90 bp CCTCATCATCTGAGACTGAGACTTGGTCTTATAAATCGCAGCTCTTTGAAAAATGGTGTGGTGATCCAGTaGGCCTCCGCTGTTTTAGAA +
Preference number: 4 (lower is better)
Translates to: PHHLRLRLGLINRSSLKNGVVIQ*ASAVLE
Trigger: TTCTAAAACAGCGGAGGCTCACTGGATCACCACACC...ATTTTTCAAAGAGCTGCGATTTATAAGACCAAGTCTCAGTCTCAGATGATGAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR CCA 90 bp TGCTTGTCTGTCAGGTCCTGTGTCTTTGTGGATAGTAGCAGCCTGATCATAATGCACATCGATCACAGTTaGTTTTATTCCAATGTCCGG +
Preference number: 4 (lower is better)
Translates to: CLSVRSCVFVDSSSLIIMHIDHS*FYSNVR
Trigger: CCGGACATTGGAATAAAACCAACTGTGATCGATGTG...CATTATGATCAGGCTGCTACTATCCACAAAGACACAGGACCTGACAGACAAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
CDS-3UTR CCA 90 bp TTTCCTAGCCCTTTGGATAGAGTGGACCTCTGCTTCCTAGCTGTGTCAAGACAACAGGAATCCATCTTGTaGAATCTGGATGTAATAACG +
Preference number: 4 (lower is better)
Translates to: FPSPLDRVDLCFLAVSRQQESIL*NLDVIT
Trigger: CGTTATTACATCCAGATTCCACAAGATGGATTCCTG...TTGTCTTGACACAGCTAGGAAGCAGAGGTCCACTCTATCCAAAGGGCTAGGAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 72 bp AATGGGGAGGATCTGAGACAATGTCTAGATATTGGTTaGCATCTTTCACAGGGGTCGTTGCATGATAACTGG +
Preference number: 4 (lower is better)
Translates to: NGEDLRQCLDIG*HLSQGSLHDNW
Trigger: CCAGTTATCATGCAACGACCCCTGTGAAAGATGCAAACCAATATCTAGACATTGTCTCAGATCCTCCCCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 72 bp ATTAATTCAGCTTTGTGGGATAAAAGCACACCAGGATaGTACTGTGGATGCCATAACAGTGCCAAGACCCTG +
Preference number: 4 (lower is better)
Translates to: INSALWDKSTPG*YCGCHNSAKTL
Trigger: CAGGGTCTTGGCACTGTTATGGCATCCACAGTACAATCCTGGTGTGCTTTTATCCCACAAAGCTGAATTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR TCA 90 bp TGCTTGTCTGTCAGGTCCTGTGTCTTTGTGGATAGTAGCAGCCTGATCATAATGAATGGACTTCTTTGCTaGGCATGTTTATGGATGACA +
Preference number: 4 (lower is better)
Translates to: CLSVRSCVFVDSSSLIIMNGLLC*ACLWMT
Trigger: TGTCATCCATAAACATGCTCAGCAAAGAAGTCCATT...CATTATGATCAGGCTGCTACTATCCACAAAGACACAGGACCTGACAGACAAGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
CDS-3UTR TCA 90 bp AACCAGGAAATAAATACTGGGTGGCATGCATTCCTCAAATGCTGGGAAACTCTGTTCCATGTTTATGGATaGCACAGGACCAATGCTGTT +
Preference number: 4 (lower is better)
Translates to: NQEINTGWHAFLKCWETLFHVYG*HRTNAV
Trigger: AACAGCATTGGTCCTGTGTCATCCATAAACATGGAA...CAGAGTTTCCCAGCATTTGAGGAATGCATGCCACCCAGTATTTATTTCCTGGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR GCA 90 bp ATCTTTCCAGAAGATTCCTGTGAACCGGGGCATAACTTGATGTTTAAGAAAATGGGGAAGTTATGCAGTTaGAGCTGGCACTCTGCATTG +
Preference number: 4 (lower is better)
Translates to: IFPEDSCEPGHNLMFKKMGKLCS*SWHSAL
Trigger: CAATGCAGAGTGCCAGCTGCAACTGCATAACTTCCC...CATTTTCTTAAACATCAAGTTATGCCCCGGTTCACAGGAATCTTCTGGAAAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR CCA 90 bp CCTCATCATCTGAGACTGAGACTTGGTCTTATAAATCGCAGCTCTTTGAAAAATGCCAAGACCCACTTCTaGTTTGATGGGGAGTCTTCA +
Preference number: 4 (lower is better)
Translates to: PHHLRLRLGLINRSSLKNAKTHF*FDGESS
Trigger: TGAAGACTCCCCATCAAACCAGAAGTGGGTCTTGGC...ATTTTTCAAAGAGCTGCGATTTATAAGACCAAGTCTCAGTCTCAGATGATGAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 72 bp GATTCACCTCTGGTTGTCTCTTCTCTATTTCCCCCATaGATCATCTCTCATCCTAAGCTATGTATGCAGATG +
Preference number: 4 (lower is better)
Translates to: DSPLVVSSLFPP*IISHPKLCMQM
Trigger: CATCTGCATACATAGCTTAGGATGAGAGATGATCAATGGGGGAAATAGAGAAGAGACAACCAGAGGTGAATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
3UTR CAA 72 bp CTGAGACTGAGACTTGGTCTTATAAATCGCAGCTCTTaGAAAAATGCTGGATTCAAATGCAACTGGTCCAGG +
Preference number: 4 (lower is better)
Translates to: LRLRLGLINRSS*KNAGFKCNWSR
Trigger: CCTGGACCAGTTGCATTTGAATCCAGCATTTTTCAAAGAGCTGCGATTTATAAGACCAAGTCTCAGTCTCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 72 bp CTATGGGTTGAAGAAGGGATTAGCAAGAATATCACTTaGAAGATGCAGTTCCTCTTTGTGTGTGTGTGTGTG +
Preference number: 4 (lower is better)
Translates to: LWVEEGISKNIT*KMQFLFVCVCV
Trigger: CACACACACACACACAAAGAGGAACTGCATCTTCAAAGTGATATTCTTGCTAATCCCTTCTTCAACCCATAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 72 bp AAAGCAGGAACTAGCTCAGTTTGGGAGGTTTTGTTGTaGAAAGTCAATTGTTTCTCCCTACCCTTTCAGCTT +
Preference number: 4 (lower is better)
Translates to: KAGTSSVWEVLL*KVNCFSLPFQL
Trigger: AAGCTGAAAGGGTAGGGAGAAACAATTGACTTTCAACAACAAAACCTCCCAAACTGAGCTAGTTCCTGCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 72 bp AACAAAGCAGGAACTAGCTCAGTTTGGGAGGTTTTGTaGTTGAAAGTCAATTGTTTCTCCCTACCCTTTCAG +
Preference number: 4 (lower is better)
Translates to: NKAGTSSVWEVL*LKVNCFSLPFQ
Trigger: CTGAAAGGGTAGGGAGAAACAATTGACTTTCAACAACAAAACCTCCCAAACTGAGCTAGTTCCTGCTTTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR GCA 90 bp TCAGTTTGGGAGGTTTTGTTGTTGAAAGTCAATTGTTTCTCCCTACCCTTTCAGAGCATACTCCATCAGTaGGGCAAAGACAAACAAGAA +
Preference number: 4 (lower is better)
Translates to: SVWEVLLLKVNCFSLPFQSILHQ*GKDKQE
Trigger: TTCTTGTTTGTCTTTGCCGCACTGATGGAGTATGCT...CTGAAAGGGTAGGGAGAAACAATTGACTTTCAACAACAAAACCTCCCAAACTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 72 bp CAAAACAAAGCAGGAACTAGCTCAGTTTGGGAGGTTTaGTTGTTGAAAGTCAATTGTTTCTCCCTACCCTTT +
Preference number: 4 (lower is better)
Translates to: QNKAGTSSVWEV*LLKVNCFSLPF
Trigger: AAAGGGTAGGGAGAAACAATTGACTTTCAACAACAAAACCTCCCAAACTGAGCTAGTTCCTGCTTTGTTTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 72 bp ACCAATTCTACAATGGGAAGACTTCTAAAATATGTCTaGAGAATCTTTCCAGAAGATTCCTGTGAACCGGGG +
Preference number: 4 (lower is better)
Translates to: TNSTMGRLLKYV*RIFPEDSCEPG
Trigger: CCCCGGTTCACAGGAATCTTCTGGAAAGATTCTCAAGACATATTTTAGAAGTCTTCCCATTGTAGAATTGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 72 bp CCATCACCAATTTTGGGATCTAAAGTTGGTTTGGCTTaGAAGTTAATGCTCATGATTAAATACATGGATGTT +
Preference number: 4 (lower is better)
Translates to: PSPILGSKVGLA*KLMLMIKYMDV
Trigger: AACATCCATGTATTTAATCATGAGCATTAACTTCAAAGCCAAACCAACTTTAGATCCCAAAATTGGTGATGG
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
3UTR CAA 72 bp AGATACAGAATACATGGATCCAGAAGCCGACTGTACTaGTTCAGAGAAATACAGAGAAGTATCTTTAAATAT +
Preference number: 4 (lower is better)
Translates to: RYRIHGSRSRLY*FREIQRSIFKY
Trigger: ATATTTAAAGATACTTCTCTGTATTTCTCTGAACAAGTACAGTCGGCTTCTGGATCCATGTATTCTGTATCT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS GCA 90 bp GGGGAGTCTTCATTCTCATCTTCTTCTACCCTCCTGGACCGAGCATaGAAGCCCGAGAACAGGCAGAGGAGAAGCAGCAGCTTTGCAGCC +
Preference number: 5 (lower is better)
Translates to: GESSFSSSSTLLDRA*KPENRQRRSSSFAA
Trigger: GGCTGCAAAGCTGCTGCTTCTCCTCTGCCTGTTCTCGGGCTTGCATGCTCGGTCCAGGAGGGTAGAAGAAGATGAGAATGAAGACTCCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068394.7
ENSMUST00000068911.13
CDS GCA 90 bp AGAAGACCCGAGAGTAGGAGTCCAGCTCAGAGACATCAATGTGGATaGGGCCTCTCCTCCAGGAGCCAGACTTGCACTCCTCATAGCAGC +
Preference number: 5 (lower is better)
Translates to: RRPESRSPAQRHQCG*GLSSRSQTCTPHSS
Trigger: GCTGCTATGAGGAGTGCAAGTCTGGCTCCTGGAGGAGAGGCCGCATCCACATTGATGTCTCTGAGCTGGACTCCTACTCTCGGGTCTTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS GCA 90 bp CAGAGACATCAATGTGGATGCGGCCTCTCCTCCAGGAGCCAGACTTaGACTCCTCATAGCAGCAGAAGAAGCTCTGGCAGTCTTTGCCAT +
Preference number: 5 (lower is better)
Translates to: QRHQCGCGLSSRSQT*TPHSSRRSSGSLCH
Trigger: ATGGCAAAGACTGCCAGAGCTTCTTCTGCTGCTATGAGGAGTGCAAGTCTGGCTCCTGGAGGAGAGGCCGCATCCACATTGATGTCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR CAA 90 bp GGAATCCAAATACAAATACAGAGGGCGGCCCAGCCACAAGGCTCAGGTGGCTTCTCGGTGTCTTGTGATTaGGGTGCCAAGACCCACTTC +
Preference number: 5 (lower is better)
Translates to: GIQIQIQRAAQPQGSGGFSVSCD*GAKTHF
Trigger: GAAGTGGGTCTTGGCACCCAAATCACAAGACACCGA...GAAGCCACCTGAGCCTTGTGGCTGGGCCGCCCTCTGTATTTGTATTTGGATTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR CAA 90 bp GTCGCCAAGGCACGTTGGGCACAAGGGCGCCCTCTCTTCACTAGGACACCACGATCTCTCAACAATTTGTaGAGAATCAGCGTTACATCG +
Preference number: 5 (lower is better)
Translates to: VAKARWAQGRPLFTRTPRSLNNL*RISVTS
Trigger: CGATGTAACGCTGATTCTCAACAAATTGTTGAGAGA...TCGTGGTGTCCTAGTGAAGAGAGGGCGCCCTTGTGCCCAACGTGCCTTGGCGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR CAA 90 bp GTCGCCAAGGCACGTTGGGCACAAGGGCGCCCTCTCTTCACTAGGACACCACGAGATCAGGAATCCATCTaGTGGAATCTGGATGTAATA +
Preference number: 5 (lower is better)
Translates to: VAKARWAQGRPLFTRTPRDQESI*WNLDVI
Trigger: TATTACATCCAGATTCCACAAGATGGATTCCTGATC...TCGTGGTGTCCTAGTGAAGAGAGGGCGCCCTTGTGCCCAACGTGCCTTGGCGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR CAA 90 bp GCACTCTTTAGAGCAGGGACACAGTCTCAGCCCCAGGTTGCTTTCTACAGTAGGAAGAGTGAGGTTCCATaGCACTTGGTGAATCTCGAA +
Preference number: 5 (lower is better)
Translates to: ALFRAGTQSQPQVAFYSRKSEVP*HLVNLE
Trigger: TTCGAGATTCACCAAGTGCAATGGAACCTCACTCTT...CCTACTGTAGAAAGCAACCTGGGGCTGAGACTGTGTCCCTGCTCTAAAGAGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
CDS-3UTR CAA 90 bp GCCGCTTCCAAACAAAGGCCTATCCACATTGCATGTGTTTGCAGGGTGAAGACAAGGGAAGTTATGCAGTaGCAGCTGGCACTCTGCATT +
Preference number: 5 (lower is better)
Translates to: AASKQRPIHIACVCRVKTREVMQ*QLALCI
Trigger: AATGCAGAGTGCCAGCTGCAACTGCATAACTTCCCT...TGTCTTCACCCTGCAAACACATGCAATGTGGATAGGCCTTTGTTTGGAAGCGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS CCA 90 bp AGCGTTACATCGGTGTCTTGTGATTTGGGTGCCAAGACCCACTTCTaGTTTGATGGGGAGTCTTCATTCTCATCTTCTTCTACCCTCCTG +
Preference number: 5 (lower is better)
Translates to: SVTSVSCDLGAKTHF*FDGESSFSSSSTLL
Trigger: CAGGAGGGTAGAAGAAGATGAGAATGAAGACTCCCCATCAAACCAGAAGTGGGTCTTGGCACCCAAATCACAAGACACCGATGTAACGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000068394.7
ENSMUST00000068911.13
CDS-3UTR CAA 90 bp CAGACCACCACCCAAGCAATTCCCCAGATCTTCACACGAAGGAAACAAAGCAGAAGCTGGCACTCTGCATaGATAGTGAGCCTTAATGTG +
Preference number: 5 (lower is better)
Translates to: QTTTQAIPQIFTRRKQSRSWHSA*IVSLNV
Trigger: CACATTAAGGCTCACTATCAATGCAGAGTGCCAGCT...TCTGCTTTGTTTCCTTCGTGTGAAGATCTGGGGAATTGCTTGGGTGGTGGTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR CAA 90 bp CAAGTCTGTACTGAGTGCAAGGGCAAGAGCCTGTCAAGAAAACAAGTAAAAATGTCGGTGTCTTGTGATTaGGGTGCCAAGACCCACTTC +
Preference number: 5 (lower is better)
Translates to: QVCTECKGKSLSRKQVKMSVSCD*GAKTHF
Trigger: GAAGTGGGTCTTGGCACCCAAATCACAAGACACCGA...CATTTTTACTTGTTTTCTTGACAGGCTCTTGCCCTTGCACTCAGTACAGACTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
CDS-3UTR CAA 90 bp GACCACCACCCAAGCAATTCCCCAGATCTTCACACGAAGGAAACAAAGCAGAATTGCCTAATGTTGTTCTaGCTGGTGTCGCATCCTTTT +
Preference number: 5 (lower is better)
Translates to: DHHPSNSPDLHTKETKQNCLMLF*LVSHPF
Trigger: AAAAGGATGCGACACCAGCAAGAACAACATTAGGCA...ATTCTGCTTTGTTTCCTTCGTGTGAAGATCTGGGGAATTGCTTGGGTGGTGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR CAA 90 bp GACCACCACCCAAGCAATTCCCCAGATCTTCACACGAAGGAAACAAAGCAGAATTGCCAGTACATGGAATaGTTTAACGTGATCATCACA +
Preference number: 5 (lower is better)
Translates to: DHHPSNSPDLHTKETKQNCQYME*FNVIIT
Trigger: TGTGATGATCACGTTAAACAATTCCATGTACTGGCA...ATTCTGCTTTGTTTCCTTCGTGTGAAGATCTGGGGAATTGCTTGGGTGGTGGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR CAA 90 bp TGCTTGTCTGTCAGGTCCTGTGTCTTTGTGGATAGTAGCAGCCTGATCATAATGTCTCTCAACAATTTGTaGAGAATCAGCGTTACATCG +
Preference number: 5 (lower is better)
Translates to: CLSVRSCVFVDSSSLIIMSLNNL*RISVTS
Trigger: CGATGTAACGCTGATTCTCAACAAATTGTTGAGAGA...CATTATGATCAGGCTGCTACTATCCACAAAGACACAGGACCTGACAGACAAGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
CDS-3UTR CAA 90 bp TGCTTGTCTGTCAGGTCCTGTGTCTTTGTGGATAGTAGCAGCCTGATCATAATGTCCGGTCTCAGCTTTTaGTCATATTCTCTCAACAAT +
Preference number: 5 (lower is better)
Translates to: CLSVRSCVFVDSSSLIIMSGLSF*SYSLNN
Trigger: ATTGTTGAGAGAATATGACAAAAAGCTGAGACCGGA...CATTATGATCAGGCTGCTACTATCCACAAAGACACAGGACCTGACAGACAAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
CDS TCA 90 bp CAATGTCCGGTCTCAGCTTTTTGTCATATTCTCTCAACAATTTGTTaGGAATCAGCGTTACATCGGTGTCTTGTGATTTGGGTGCCAAGA +
Preference number: 5 (lower is better)
Translates to: QCPVSAFCHILSTIC*ESALHRCLVIWVPR
Trigger: TCTTGGCACCCAAATCACAAGACACCGATGTAACGCTGATTCTCAACAAATTGTTGAGAGAATATGACAAAAAGCTGAGACCGGACATTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068394.7
ENSMUST00000068911.13
CDS-3UTR CAA 90 bp TGCTTGTCTGTCAGGTCCTGTGTCTTTGTGGATAGTAGCAGCCTGATCATAATGGATTCAGTGTCAGGTTaGAAGCAATGTCCATATAAT +
Preference number: 5 (lower is better)
Translates to: CLSVRSCVFVDSSSLIIMDSVSG*KQCPYN
Trigger: ATTATATGGACATTGCTTCAAACCTGACACTGAATC...CATTATGATCAGGCTGCTACTATCCACAAAGACACAGGACCTGACAGACAAGCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
CDS-3UTR CAA 90 bp CATCTGAGACTGAGACTTGGTCTTATAAATCGCAGCTCTTTGAAAAATGCTGGAATTTTCATTGTGCTGTaGAATCGAAGGCGACTGTCT +
Preference number: 5 (lower is better)
Translates to: HLRLRLGLINRSSLKNAGIFIVL*NRRRLS
Trigger: AGACAGTCGCCTTCGATTCAACAGCACAATGAAAAT...TCCAGCATTTTTCAAAGAGCTGCGATTTATAAGACCAAGTCTCAGTCTCAGATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS-3UTR CAA 90 bp CCTCATCATCTGAGACTGAGACTTGGTCTTATAAATCGCAGCTCTTTGAAAAATATCAAGCCCACCATGTaGCTGTTCAGAGTTAGTATT +
Preference number: 5 (lower is better)
Translates to: PHHLRLRLGLINRSSLKNIKPTM*LFRVSI
Trigger: AATACTAACTCTGAACAGCAACATGGTGGGCTTGAT...ATTTTTCAAAGAGCTGCGATTTATAAGACCAAGTCTCAGTCTCAGATGATGAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS GCA 72 bp TCATTCTCATCTTCTTCTACCCTCCTGGACCGAGCATaGAAGCCCGAGAACAGGCAGAGGAGAAGCAGCAGC +
Preference number: 6 (lower is better)
Translates to: SFSSSSTLLDRA*KPENRQRRSSS
Trigger: GCTGCTGCTTCTCCTCTGCCTGTTCTCGGGCTTGCATGCTCGGTCCAGGAGGGTAGAAGAAGATGAGAATGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000068394.7
ENSMUST00000068911.13
CDS CAA 72 bp ACACAGGTGTCCTCAAATTCCTGCCAGTACATGGAATaGTTTAACGTGATCATCACAGGTGGTGGGGGCCTC +
Preference number: 6 (lower is better)
Translates to: TQVSSNSCQYME*FNVIITGGGGL
Trigger: GAGGCCCCCACCACCTGTGATGATCACGTTAAACAATTCCATGTACTGGCAGGAATTTGAGGACACCTGTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000068911.13
CDS CAA 90 bp CCAATGTCCGGTCTCAGCTTTTTGTCATATTCTCTCAACAATTTGTaGAGAATCAGCGTTACATCGGTGTCTTGTGATTTGGGTGCCAAG +
Preference number: 6 (lower is better)
Translates to: PMSGLSFLSYSLNNL*RISVTSVSCDLGAK
Trigger: CTTGGCACCCAAATCACAAGACACCGATGTAACGCTGATTCTCAACAAATTGTTGAGAGAATATGACAAAAAGCTGAGACCGGACATTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068394.7
ENSMUST00000068911.13
CDS CAA 90 bp ATTCCAATGTCCGGTCTCAGCTTTTTGTCATATTCTCTCAACAATTaGTTGAGAATCAGCGTTACATCGGTGTCTTGTGATTTGGGTGCC +
Preference number: 6 (lower is better)
Translates to: IPMSGLSFLSYSLNN*LRISVTSVSCDLGA
Trigger: GGCACCCAAATCACAAGACACCGATGTAACGCTGATTCTCAACAAATTGTTGAGAGAATATGACAAAAAGCTGAGACCGGACATTGGAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068394.7
ENSMUST00000068911.13
CDS CAA 90 bp TCTAAGAAGAGTGAGGTTCCATTGCACTTGGTGAATCTCGAAGTCTaGGATGAAATGGGATTCAGTGTCAGGTTTGAAGCAATGTCCATA +
Preference number: 6 (lower is better)
Translates to: SKKSEVPLHLVNLEV*DEMGFSVRFEAMSI
Trigger: TATGGACATTGCTTCAAACCTGACACTGAATCCCATTTCATCCAAGACTTCGAGATTCACCAAGTGCAATGGAACCTCACTCTTCTTAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000068394.7
CDS CAA 72 bp TCCGGTCTCAGCTTTTTGTCATATTCTCTCAACAATTaGTTGAGAATCAGCGTTACATCGGTGTCTTGTGAT +
Preference number: 6 (lower is better)
Translates to: SGLSFLSYSLNN*LRISVTSVSCD
Trigger: ATCACAAGACACCGATGTAACGCTGATTCTCAACAAATTGTTGAGAGAATATGACAAAAAGCTGAGACCGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000068394.7
ENSMUST00000068911.13