Pregenerated sensors for GABRG1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001260Ensembl transcript IDs: ENSMUST00000031119.6, ENSMUST00000199705.2
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TGTCCTCAGCAAGAGCATAAAATGCTCTTGTGTGCTGAGCCATCTTaGCAGACCTACAGTGAATATTTCTATTGCTTATTTCCAAGTGGA | + |
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Preference number: 1 (lower is better) Translates to: CPQQEHKMLLCAEPS*QTYSEYFYCLFPSG Trigger: TCCACTTGGAAATAAGCAATAGAAATATTCACTGTAGGTCTGGCAAGATGGCTCAGCACACAAGAGCATTTTATGCTCTTGCTGAGGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| 3UTR GCA 90 bp | AGGGCACATAAAGGTTACTATGCTGTTTTGTCTACAAGAATAAAATaGTGCTATGCACCTTCTGCTTCTCAGTTTAAATCCTGGTCTTGT | + |
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Preference number: 1 (lower is better) Translates to: RAHKGYYAVLSTRIK*CYAPSASQFKSWSC Trigger: ACAAGACCAGGATTTAAACTGAGAAGCAGAAGGTGCATAGCAGCATTTTATTCTTGTAGACAAAACAGCATAGTAACCTTTATGTGCCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031119.6 |
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| 3UTR-3UTR TCA 90 bp | AATAACTCAGCCTGTGTCCTCAGCAAGAGCATAAAATGCTCTTGTGTGCTGAGCGATTCTTTGAACTTGTaGATCCCTTTTGTAGCACTT | + |
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Preference number: 2 (lower is better) Translates to: NNSACVLSKSIKCSCVLSDSLNL*IPFVAL Trigger: AAGTGCTACAAAAGGGATTCACAAGTTCAAAGAATC...GCTCAGCACACAAGAGCATTTTATGCTCTTGCTGAGGACACAGGCTGAGTTATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| 3UTR-3UTR TCA 90 bp | GGATTTCGTGATGTCCCTACTCAAGTTCATTACAGTTGTCTCATACAAAGTCCAGATTCTTTGAACTTGTaGATCCCTTTTGTAGCACTT | + |
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Preference number: 2 (lower is better) Translates to: GFRDVPTQVHYSCLIQSPDSLNL*IPFVAL Trigger: AAGTGCTACAAAAGGGATTCACAAGTTCAAAGAATC...TGGACTTTGTATGAGACAACTGTAATGAACTTGAGTAGGGACATCACGAAATCC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| 3UTR-3UTR GCA 90 bp | TATAATTCTCACAGTATAATACAATCAAGGTTTCACCTAGTGACTGCTACACCATGTGCTGAGCCATCTTaGCAGACCTACAGTGAATAT | + |
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Preference number: 2 (lower is better) Translates to: YNSHSIIQSRFHLVTATPCAEPS*QTYSEY Trigger: ATATTCACTGTAGGTCTGGCAAGATGGCTCAGCACA...TGGTGTAGCAGTCACTAGGTGAAACCTTGATTGTATTATACTGTGAGAATTATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| 3UTR-3UTR GCA 90 bp | TATAATTCTCACAGTATAATACAATCAAGGTTTCACCTAGTGACTGCTACACCAAGCAAGAGCATAAAATaGTCTTGTGTGCTGAGCCAT | + |
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Preference number: 2 (lower is better) Translates to: YNSHSIIQSRFHLVTATPSKSIK*SCVLSH Trigger: ATGGCTCAGCACACAAGAGCATTTTATGCTCTTGCT...TGGTGTAGCAGTCACTAGGTGAAACCTTGATTGTATTATACTGTGAGAATTATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| 3UTR-3UTR CCA 90 bp | TATAATTCTCACAGTATAATACAATCAAGGTTTCACCTAGTGACTGCTACACCATTGCTTATTTCCAAGTaGAAGCCTCCTCTCACAGAT | + |
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Preference number: 2 (lower is better) Translates to: YNSHSIIQSRFHLVTATPLLISK*KPPLTD Trigger: ATCTGTGAGAGGAGGCTTCCACTTGGAAATAAGCAA...TGGTGTAGCAGTCACTAGGTGAAACCTTGATTGTATTATACTGTGAGAATTATA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| 3UTR CAA 90 bp | AGAAAACACAACTTAGTTACTAATGTCATTCCAAATGGCCCAGCTTaGTTAGCAAATGTAAAGCTGGAATCTTCTTGTGTTGCATTCAGA | + |
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Preference number: 2 (lower is better) Translates to: RKHNLVTNVIPNGPA*LANVKLESSCVAFR Trigger: TCTGAATGCAACACAAGAAGATTCCAGCTTTACATTTGCTAACAAAGCTGGGCCATTTGGAATGACATTAGTAACTAAGTTGTGTTTTCT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031119.6 |
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| 3UTR-3UTR GCA 90 bp | TATAATTCTCACAGTATAATACAATCAAGGTTTCACCTAGTGACTGCTACACCATCTCATTGTGACAACTaGTGTCAAAAATGGACATGC | + |
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Preference number: 2 (lower is better) Translates to: YNSHSIIQSRFHLVTATPSHCDN*CQKWTC Trigger: GCATGTCCATTTTTGACAGCAGTTGTCACAATGAGA...TGGTGTAGCAGTCACTAGGTGAAACCTTGATTGTATTATACTGTGAGAATTATA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| 3UTR-3UTR GCA 90 bp | TATAATTCTCACAGTATAATACAATCAAGGTTTCACCTAGTGACTGCTACACCAGTGAAGGTTGACTTCTaGTTAACATTGAGCAGAAAA | + |
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Preference number: 2 (lower is better) Translates to: YNSHSIIQSRFHLVTATPVKVDF*LTLSRK Trigger: TTTTCTGCTCAATGTTAAGCAGAAGTCAACCTTCAC...TGGTGTAGCAGTCACTAGGTGAAACCTTGATTGTATTATACTGTGAGAATTATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| 3UTR-3UTR CCA 90 bp | TATAATTCTCACAGTATAATACAATCAAGGTTTCACCTAGTGACTGCTACACCAAACTGCTGTCAAAAATaGACATGCCTTTCTCTGATT | + |
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Preference number: 2 (lower is better) Translates to: YNSHSIIQSRFHLVTATPNCCQK*TCLSLI Trigger: AATCAGAGAAAGGCATGTCCATTTTTGACAGCAGTT...TGGTGTAGCAGTCACTAGGTGAAACCTTGATTGTATTATACTGTGAGAATTATA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| 3UTR CCA 72 bp | TGCTGCTATGCACCTTCTGCTTCTCAGTTTAAATCCTaGTCTTGTAAATCGGAACGGGGTCCACATAAATTA | + |
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Preference number: 3 (lower is better) Translates to: CCYAPSASQFKS*SCKSERGPHKL Trigger: TAATTTATGTGGACCCCGTTCCGATTTACAAGACCAGGATTTAAACTGAGAAGCAGAAGGTGCATAGCAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031119.6 |
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| 3UTR-3UTR CAA 90 bp | TATAATTCTCACAGTATAATACAATCAAGGTTTCACCTAGTGACTGCTACACCAGAGCATAAAATGCTCTaGTGTGCTGAGCCATCTTGC | + |
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Preference number: 3 (lower is better) Translates to: YNSHSIIQSRFHLVTATPEHKML*CAEPSC Trigger: GCAAGATGGCTCAGCACACAAGAGCATTTTATGCTC...TGGTGTAGCAGTCACTAGGTGAAACCTTGATTGTATTATACTGTGAGAATTATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| 3UTR GCA 72 bp | CAAGAGCATAAAATGCTCTTGTGTGCTGAGCCATCTTaGCAGACCTACAGTGAATATTTCTATTGCTTATTT | + |
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Preference number: 3 (lower is better) Translates to: QEHKMLLCAEPS*QTYSEYFYCLF Trigger: AAATAAGCAATAGAAATATTCACTGTAGGTCTGGCAAGATGGCTCAGCACACAAGAGCATTTTATGCTCTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| 3UTR GCA 72 bp | CACACTTTTGATGATAAGACCTCTCATTGTGACAACTaGTGTCAAAAATGGACATGCCTTTCTCTGATTTAT | + |
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Preference number: 3 (lower is better) Translates to: HTFDDKTSHCDN*CQKWTCLSLIY Trigger: ATAAATCAGAGAAAGGCATGTCCATTTTTGACAGCAGTTGTCACAATGAGAGGTCTTATCATCAAAAGTGTG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| 3UTR GCA 72 bp | AAAGGTTACTATGCTGTTTTGTCTACAAGAATAAAATaGTGCTATGCACCTTCTGCTTCTCAGTTTAAATCC | + |
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Preference number: 3 (lower is better) Translates to: KGYYAVLSTRIK*CYAPSASQFKS Trigger: GGATTTAAACTGAGAAGCAGAAGGTGCATAGCAGCATTTTATTCTTGTAGACAAAACAGCATAGTAACCTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031119.6 |
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| CDS-3UTR GCA 90 bp | AATAACTCAGCCTGTGTCCTCAGCAAGAGCATAAAATGCTCTTGTGTGCTGAGCTCCGTATTCCATGAGTaGCAGGGATGTTCTAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: NNSACVLSKSIKCSCVLSSVFHE*QGCSSR Trigger: CCTGCTAGAACATCCCTGGCACTCATGGAATACGGA...GCTCAGCACACAAGAGCATTTTATGCTCTTGCTGAGGACACAGGCTGAGTTATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000199705.2 |
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| CDS-3UTR TCA 90 bp | AATAACTCAGCCTGTGTCCTCAGCAAGAGCATAAAATGCTCTTGTGTGCTGAGCGTGATATCTCCTTCATaGATTTTTGGTGCCAAGACC | + |
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Preference number: 4 (lower is better) Translates to: NNSACVLSKSIKCSCVLSVISPS*IFGAKT Trigger: GGTCTTGGCACCAAAAATTCATGAAGGAGATATCAC...GCTCAGCACACAAGAGCATTTTATGCTCTTGCTGAGGACACAGGCTGAGTTATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR TCA 90 bp | AATAACTCAGCCTGTGTCCTCAGCAAGAGCATAAAATGCTCTTGTGTGCTGAGCATTTTCTTGAGTTCCTaGAGAAAGTGTCGGGAATCC | + |
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Preference number: 4 (lower is better) Translates to: NNSACVLSKSIKCSCVLSIFLSS*RKCRES Trigger: GGATTCCCGACACTTTCTTCAGGAACTCAAGAAAAT...GCTCAGCACACAAGAGCATTTTATGCTCTTGCTGAGGACACAGGCTGAGTTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR TCA 90 bp | GGATTTCGTGATGTCCCTACTCAAGTTCATTACAGTTGTCTCATACAAAGTCCATGCTGTTCATGGGAATaGGAGTGGATCCAGCATGGA | + |
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Preference number: 4 (lower is better) Translates to: GFRDVPTQVHYSCLIQSPCCSWE*EWIQHG Trigger: TCCATGCTGGATCCACTCTCATTCCCATGAACAGCA...TGGACTTTGTATGAGACAACTGTAATGAACTTGAGTAGGGACATCACGAAATCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR GCA 90 bp | GGATTTCGTGATGTCCCTACTCAAGTTCATTACAGTTGTCTCATACAAAGTCCATCCAGGACCCAGTTCTaGAGTCATCGAAGCAACAGA | + |
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Preference number: 4 (lower is better) Translates to: GFRDVPTQVHYSCLIQSPSRTQF*SHRSNR Trigger: TCTGTTGCTTCGATGACTGCAGAACTGGGTCCTGGA...TGGACTTTGTATGAGACAACTGTAATGAACTTGAGTAGGGACATCACGAAATCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| 3UTR CAA 72 bp | CCCAGCTTTGTTAGCAAATGTAAAGCTGGAATCTTCTaGTGTTGCATTCAGATGGGTGAGGGCGACATAACT | + |
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Preference number: 4 (lower is better) Translates to: PSFVSKCKAGIF*CCIQMGEGDIT Trigger: AGTTATGTCGCCCTCACCCATCTGAATGCAACACAAGAAGATTCCAGCTTTACATTTGCTAACAAAGCTGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031119.6 |
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| CDS-3UTR TCA 90 bp | AATAACTCAGCCTGTGTCCTCAGCAAGAGCATAAAATGCTCTTGTGTGCTGAGCCTTTCATGGTGCTATTaGACTTTAAACGGCTGTCAA | + |
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Preference number: 4 (lower is better) Translates to: NNSACVLSKSIKCSCVLSLSWCY*TLNGCQ Trigger: TTGACAGCCGTTTAAAGTTCAATAGCACCATGAAAG...GCTCAGCACACAAGAGCATTTTATGCTCTTGCTGAGGACACAGGCTGAGTTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR GCA 90 bp | AATAACTCAGCCTGTGTCCTCAGCAAGAGCATAAAATGCTCTTGTGTGCTGAGCGACAAAGAGATCCATTaGTGTCACGTAAGAAACCTT | + |
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Preference number: 4 (lower is better) Translates to: NNSACVLSKSIKCSCVLSDKEIH*CHVRNL Trigger: AAGGTTTCTTACGTGACAGCAATGGATCTCTTTGTC...GCTCAGCACACAAGAGCATTTTATGCTCTTGCTGAGGACACAGGCTGAGTTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031119.6 |
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| CDS-3UTR CCA 90 bp | AATAACTCAGCCTGTGTCCTCAGCAAGAGCATAAAATGCTCTTGTGTGCTGAGCATCATCTTCCCCTTGTaGCAAAGAAATGCTGTTCAT | + |
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Preference number: 4 (lower is better) Translates to: NNSACVLSKSIKCSCVLSIIFPL*QRNAVH Trigger: ATGAACAGCATTTCTTTGCCACAAGGGGAAGATGAT...GCTCAGCACACAAGAGCATTTTATGCTCTTGCTGAGGACACAGGCTGAGTTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR CCA 90 bp | AATAACTCAGCCTGTGTCCTCAGCAAGAGCATAAAATGCTCTTGTGTGCTGAGCCAAGGCAAAAGCTGTTaGGAAAAAGATTCTGGAGTA | + |
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Preference number: 4 (lower is better) Translates to: NNSACVLSKSIKCSCVLSQGKSC*EKDSGV Trigger: TACTCCAGAATCTTTTTCCCAACAGCTTTTGCCTTG...GCTCAGCACACAAGAGCATTTTATGCTCTTGCTGAGGACACAGGCTGAGTTATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR TCA 90 bp | AATAACTCAGCCTGTGTCCTCAGCAAGAGCATAAAATGCTCTTGTGTGCTGAGCTCTCCAGAGATTGTGTaGGAGATTTCAGTAGAATTT | + |
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Preference number: 4 (lower is better) Translates to: NNSACVLSKSIKCSCVLSSPEIV*EISVEF Trigger: AAATTCTACTGAAATCTCTCACACAATCTCTGGAGA...GCTCAGCACACAAGAGCATTTTATGCTCTTGCTGAGGACACAGGCTGAGTTATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR TCA 90 bp | GGATTTCGTGATGTCCCTACTCAAGTTCATTACAGTTGTCTCATACAAAGTCCACCCAGTAAACCAGATTaGACAAGGCAAAAGCTGTTG | + |
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Preference number: 4 (lower is better) Translates to: GFRDVPTQVHYSCLIQSPPSKPD*TRQKLL Trigger: CAACAGCTTTTGCCTTGTTCAATCTGGTTTACTGGG...TGGACTTTGTATGAGACAACTGTAATGAACTTGAGTAGGGACATCACGAAATCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR TCA 90 bp | TATAATTCTCACAGTATAATACAATCAAGGTTTCACCTAGTGACTGCTACACCACTCACTCCTCTAGTTTaGCTCCACAGGAGAGAAGGA | + |
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Preference number: 4 (lower is better) Translates to: YNSHSIIQSRFHLVTATPLTPLV*LHRREG Trigger: TCCTTCTCTCCTGTGGAGTCAAACTAGAGGAGTGAG...TGGTGTAGCAGTCACTAGGTGAAACCTTGATTGTATTATACTGTGAGAATTATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR TCA 90 bp | TATAATTCTCACAGTATAATACAATCAAGGTTTCACCTAGTGACTGCTACACCATGCTGTTCATGGGAATaGGAGTGGATCCAGCATGGA | + |
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Preference number: 4 (lower is better) Translates to: YNSHSIIQSRFHLVTATPCCSWE*EWIQHG Trigger: TCCATGCTGGATCCACTCTCATTCCCATGAACAGCA...TGGTGTAGCAGTCACTAGGTGAAACCTTGATTGTATTATACTGTGAGAATTATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR GCA 90 bp | TATAATTCTCACAGTATAATACAATCAAGGTTTCACCTAGTGACTGCTACACCATCCAGGACCCAGTTCTaGAGTCATCGAAGCAACAGA | + |
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Preference number: 4 (lower is better) Translates to: YNSHSIIQSRFHLVTATPSRTQF*SHRSNR Trigger: TCTGTTGCTTCGATGACTGCAGAACTGGGTCCTGGA...TGGTGTAGCAGTCACTAGGTGAAACCTTGATTGTATTATACTGTGAGAATTATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR GCA 90 bp | GGATTTCGTGATGTCCCTACTCAAGTTCATTACAGTTGTCTCATACAAAGTCCAACACAGTTTCCCAGATaGAGGGTTAGTAACAAGAAT | + |
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Preference number: 4 (lower is better) Translates to: GFRDVPTQVHYSCLIQSPTQFPR*RVSNKN Trigger: ATTCTTGTTACTAACCCTGCATCTGGGAAACTGTGT...TGGACTTTGTATGAGACAACTGTAATGAACTTGAGTAGGGACATCACGAAATCC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR GCA 90 bp | GGATTTCGTGATGTCCCTACTCAAGTTCATTACAGTTGTCTCATACAAAGTCCAAGTCAATTTTTGCAATaGGTATGTGTATCCGCCCTT | + |
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Preference number: 4 (lower is better) Translates to: GFRDVPTQVHYSCLIQSPSQFLQ*VCVSAL Trigger: AAGGGCGGATACACATACGCATTGCAAAAATTGACT...TGGACTTTGTATGAGACAACTGTAATGAACTTGAGTAGGGACATCACGAAATCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR CCA 90 bp | GGATTTCGTGATGTCCCTACTCAAGTTCATTACAGTTGTCTCATACAAAGTCCAATCATCTTCCCCTTGTaGCAAAGAAATGCTGTTCAT | + |
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Preference number: 4 (lower is better) Translates to: GFRDVPTQVHYSCLIQSPIIFPL*QRNAVH Trigger: ATGAACAGCATTTCTTTGCCACAAGGGGAAGATGAT...TGGACTTTGTATGAGACAACTGTAATGAACTTGAGTAGGGACATCACGAAATCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR TCA 90 bp | TATAATTCTCACAGTATAATACAATCAAGGTTTCACCTAGTGACTGCTACACCAAGGGTATCCATAGCTTaGAAATTCCAGTGGACAGGA | + |
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Preference number: 4 (lower is better) Translates to: YNSHSIIQSRFHLVTATPRVSIA*KFQWTG Trigger: TCCTGTCCACTGGAATTTTCAAGCTATGGATACCCT...TGGTGTAGCAGTCACTAGGTGAAACCTTGATTGTATTATACTGTGAGAATTATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR TCA 90 bp | TATAATTCTCACAGTATAATACAATCAAGGTTTCACCTAGTGACTGCTACACCACCCAGTAAACCAGATTaGACAAGGCAAAAGCTGTTG | + |
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Preference number: 4 (lower is better) Translates to: YNSHSIIQSRFHLVTATPPSKPD*TRQKLL Trigger: CAACAGCTTTTGCCTTGTTCAATCTGGTTTACTGGG...TGGTGTAGCAGTCACTAGGTGAAACCTTGATTGTATTATACTGTGAGAATTATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR GCA 90 bp | GGATTTCGTGATGTCCCTACTCAAGTTCATTACAGTTGTCTCATACAAAGTCCATCCGTATTCCATGAGTaGTGCAAACACAAAAATGAA | + |
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Preference number: 4 (lower is better) Translates to: GFRDVPTQVHYSCLIQSPSVFHE*CKHKNE Trigger: TTCATTTTTGTGTTTGCAGCACTCATGGAATACGGA...TGGACTTTGTATGAGACAACTGTAATGAACTTGAGTAGGGACATCACGAAATCC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031119.6 |
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| 3UTR CAA 72 bp | TGCAGTTCAAGGGCACATAAAGGTTACTATGCTGTTTaGTCTACAAGAATAAAATGCTGCTATGCACCTTCT | + |
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Preference number: 4 (lower is better) Translates to: CSSRAHKGYYAV*STRIKCCYAPS Trigger: AGAAGGTGCATAGCAGCATTTTATTCTTGTAGACAAAACAGCATAGTAACCTTTATGTGCCCTTGAACTGCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031119.6 |
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| CDS-3UTR TCA 90 bp | TATAATTCTCACAGTATAATACAATCAAGGTTTCACCTAGTGACTGCTACACCAGTGATATCTCCTTCATaGATTTTTGGTGCCAAGACC | + |
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Preference number: 4 (lower is better) Translates to: YNSHSIIQSRFHLVTATPVISPS*IFGAKT Trigger: GGTCTTGGCACCAAAAATTCATGAAGGAGATATCAC...TGGTGTAGCAGTCACTAGGTGAAACCTTGATTGTATTATACTGTGAGAATTATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR TCA 90 bp | TATAATTCTCACAGTATAATACAATCAAGGTTTCACCTAGTGACTGCTACACCAATTTTCTTGAGTTCCTaGAGAAAGTGTCGGGAATCC | + |
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Preference number: 4 (lower is better) Translates to: YNSHSIIQSRFHLVTATPIFLSS*RKCRES Trigger: GGATTCCCGACACTTTCTTCAGGAACTCAAGAAAAT...TGGTGTAGCAGTCACTAGGTGAAACCTTGATTGTATTATACTGTGAGAATTATA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR GCA 90 bp | TATAATTCTCACAGTATAATACAATCAAGGTTTCACCTAGTGACTGCTACACCATGTTTTTCAGCTTCCTaGCTCTGGTGGTTTTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: YNSHSIIQSRFHLVTATPCFSAS*LWWFFL Trigger: AAGGAAAAACCACCAGAGGCAGGAAGCTGAAAAACA...TGGTGTAGCAGTCACTAGGTGAAACCTTGATTGTATTATACTGTGAGAATTATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR CCA 90 bp | GGATTTCGTGATGTCCCTACTCAAGTTCATTACAGTTGTCTCATACAAAGTCCACTGTCAAACCAGGTTTaGGCAAAAATTATGTCTATT | + |
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Preference number: 4 (lower is better) Translates to: GFRDVPTQVHYSCLIQSPLSNQV*AKIMSI Trigger: AATAGACATAATTTTTGCCCAAACCTGGTTTGACAG...TGGACTTTGTATGAGACAACTGTAATGAACTTGAGTAGGGACATCACGAAATCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR TCA 90 bp | TATAATTCTCACAGTATAATACAATCAAGGTTTCACCTAGTGACTGCTACACCACTTTCATGGTGCTATTaGACTTTAAACGGCTGTCAA | + |
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Preference number: 4 (lower is better) Translates to: YNSHSIIQSRFHLVTATPLSWCY*TLNGCQ Trigger: TTGACAGCCGTTTAAAGTTCAATAGCACCATGAAAG...TGGTGTAGCAGTCACTAGGTGAAACCTTGATTGTATTATACTGTGAGAATTATA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR GCA 90 bp | TATAATTCTCACAGTATAATACAATCAAGGTTTCACCTAGTGACTGCTACACCAGTAGGAGTCAATTTTTaGAATGCGTATGTGTATCCG | + |
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Preference number: 4 (lower is better) Translates to: YNSHSIIQSRFHLVTATPVGVNF*NAYVYP Trigger: CGGATACACATACGCATTGCAAAAATTGACTCCTAC...TGGTGTAGCAGTCACTAGGTGAAACCTTGATTGTATTATACTGTGAGAATTATA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR CCA 90 bp | TATAATTCTCACAGTATAATACAATCAAGGTTTCACCTAGTGACTGCTACACCACAAGGCAAAAGCTGTTaGGAAAAAGATTCTGGAGTA | + |
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Preference number: 4 (lower is better) Translates to: YNSHSIIQSRFHLVTATPQGKSC*EKDSGV Trigger: TACTCCAGAATCTTTTTCCCAACAGCTTTTGCCTTG...TGGTGTAGCAGTCACTAGGTGAAACCTTGATTGTATTATACTGTGAGAATTATA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| 3UTR CAA 72 bp | AACTTAGTTACTAATGTCATTCCAAATGGCCCAGCTTaGTTAGCAAATGTAAAGCTGGAATCTTCTTGTGTT | + |
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Preference number: 4 (lower is better) Translates to: NLVTNVIPNGPA*LANVKLESSCV Trigger: AACACAAGAAGATTCCAGCTTTACATTTGCTAACAAAGCTGGGCCATTTGGAATGACATTAGTAACTAAGTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031119.6 |
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| CDS-3UTR GCA 90 bp | TATAATTCTCACAGTATAATACAATCAAGGTTTCACCTAGTGACTGCTACACCAGTATTCCATGAGTGCTaGAAACACAAAAATGAAACA | + |
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Preference number: 4 (lower is better) Translates to: YNSHSIIQSRFHLVTATPVFHEC*KHKNET Trigger: TGTTTCATTTTTGTGTTTGCAGCACTCATGGAATAC...TGGTGTAGCAGTCACTAGGTGAAACCTTGATTGTATTATACTGTGAGAATTATA 34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000031119.6 |
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| CDS CCA 90 bp | AGAAATGCTGTTCATGGGAATGAGAGTGGATCCAGCATGGAGACCTaGGGAAGCCGAAGTCTTGTTTTTCAGCTTCCTGCCTCTGGTGGT | + |
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Preference number: 5 (lower is better) Translates to: RNAVHGNESGSSMET*GSRSLVFQLPASGG Trigger: ACCACCAGAGGCAGGAAGCTGAAAAACAAGACTTCGGCTTCCCCAGGTCTCCATGCTGGATCCACTCTCATTCCCATGAACAGCATTTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS TCA 90 bp | CATAATCATCTTCCCCTTGTGGCAAAGAAATGCTGTTCATGGGAATaGGAGTGGATCCAGCATGGAGACCTGGGGAAGCCGAAGTCTTGT | + |
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Preference number: 5 (lower is better) Translates to: HNHLPLVAKKCCSWE*EWIQHGDLGKPKSC Trigger: ACAAGACTTCGGCTTCCCCAGGTCTCCATGCTGGATCCACTCTCATTCCCATGAACAGCATTTCTTTGCCACAAGGGGAAGATGATTATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS CCA 90 bp | GTCTTTGCCCTCCAAACACTGGTAGCCATAATCATCTTCCCCTTGTaGCAAAGAAATGCTGTTCATGGGAATGAGAGTGGATCCAGCATG | + |
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Preference number: 5 (lower is better) Translates to: VFALQTLVAIIIFPL*QRNAVHGNESGSSM Trigger: CATGCTGGATCCACTCTCATTCCCATGAACAGCATTTCTTTGCCACAAGGGGAAGATGATTATGGCTACCAGTGTTTGGAGGGCAAAGAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR CAA 90 bp | GGATTTCGTGATGTCCCTACTCAAGTTCATTACAGTTGTCTCATACAAAGTCCACCTCACTCCTCTAGTTaGACTCCACAGGAGAGAAGG | + |
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Preference number: 5 (lower is better) Translates to: GFRDVPTQVHYSCLIQSPPHSSS*TPQERR Trigger: CCTTCTCTCCTGTGGAGTCAAACTAGAGGAGTGAGG...TGGACTTTGTATGAGACAACTGTAATGAACTTGAGTAGGGACATCACGAAATCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR CAA 90 bp | AATAACTCAGCCTGTGTCCTCAGCAAGAGCATAAAATGCTCTTGTGTGCTGAGCCCCACCATGTTGCTGTaGAGCATAAGTACTTTCATG | + |
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Preference number: 5 (lower is better) Translates to: NNSACVLSKSIKCSCVLSPTMLL*SISTFM Trigger: CATGAAAGTACTTATGCTCAACAGCAACATGGTGGG...GCTCAGCACACAAGAGCATTTTATGCTCTTGCTGAGGACACAGGCTGAGTTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR CAA 90 bp | GGATTTCGTGATGTCCCTACTCAAGTTCATTACAGTTGTCTCATACAAAGTCCAGGGGAAGCCGAAGTCTaGTTTTTCAGCTTCCTGCCT | + |
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Preference number: 5 (lower is better) Translates to: GFRDVPTQVHYSCLIQSPGEAEV*FFSFLP Trigger: AGGCAGGAAGCTGAAAAACAAGACTTCGGCTTCCCC...TGGACTTTGTATGAGACAACTGTAATGAACTTGAGTAGGGACATCACGAAATCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR CAA 90 bp | AATAACTCAGCCTGTGTCCTCAGCAAGAGCATAAAATGCTCTTGTGTGCTGAGCATTTTCCCCACCATGTaGCTGTTGAGCATAAGTACT | + |
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Preference number: 5 (lower is better) Translates to: NNSACVLSKSIKCSCVLSIFPTM*LLSIST Trigger: AGTACTTATGCTCAACAGCAACATGGTGGGGAAAAT...GCTCAGCACACAAGAGCATTTTATGCTCTTGCTGAGGACACAGGCTGAGTTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR CAA 90 bp | AATAACTCAGCCTGTGTCCTCAGCAAGAGCATAAAATGCTCTTGTGTGCTGAGCACAAGGCAAAAGCTGTaGGGAAAAAGATTCTGGAGT | + |
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Preference number: 5 (lower is better) Translates to: NNSACVLSKSIKCSCVLSTRQKL*GKRFWS Trigger: ACTCCAGAATCTTTTTCCCAACAGCTTTTGCCTTGT...GCTCAGCACACAAGAGCATTTTATGCTCTTGCTGAGGACACAGGCTGAGTTATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR CAA 90 bp | AATAACTCAGCCTGTGTCCTCAGCAAGAGCATAAAATGCTCTTGTGTGCTGAGCCAAAGAGTTGAGGATTaGTGTGATATCTCCTTCATG | + |
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Preference number: 5 (lower is better) Translates to: NNSACVLSKSIKCSCVLSQRVED*CDISFM Trigger: CATGAAGGAGATATCACACAAATCCTCAACTCTTTG...GCTCAGCACACAAGAGCATTTTATGCTCTTGCTGAGGACACAGGCTGAGTTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR CAA 90 bp | AATAACTCAGCCTGTGTCCTCAGCAAGAGCATAAAATGCTCTTGTGTGCTGAGCATAATCATCTTCCCCTaGTGGCAAAGAAATGCTGTT | + |
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Preference number: 5 (lower is better) Translates to: NNSACVLSKSIKCSCVLSIIIFP*WQRNAV Trigger: AACAGCATTTCTTTGCCACAAGGGGAAGATGATTAT...GCTCAGCACACAAGAGCATTTTATGCTCTTGCTGAGGACACAGGCTGAGTTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR CAA 90 bp | AATAACTCAGCCTGTGTCCTCAGCAAGAGCATAAAATGCTCTTGTGTGCTGAGCAGTAGGAGTCAATTTTaGCAATGCGTATGTGTATCC | + |
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Preference number: 5 (lower is better) Translates to: NNSACVLSKSIKCSCVLSSRSQF*QCVCVS Trigger: GGATACACATACGCATTGCAAAAATTGACTCCTACT...GCTCAGCACACAAGAGCATTTTATGCTCTTGCTGAGGACACAGGCTGAGTTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR CAA 90 bp | TATAATTCTCACAGTATAATACAATCAAGGTTTCACCTAGTGACTGCTACACCACCTCACTCCTCTAGTTaGACTCCACAGGAGAGAAGG | + |
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Preference number: 5 (lower is better) Translates to: YNSHSIIQSRFHLVTATPPHSSS*TPQERR Trigger: CCTTCTCTCCTGTGGAGTCAAACTAGAGGAGTGAGG...TGGTGTAGCAGTCACTAGGTGAAACCTTGATTGTATTATACTGTGAGAATTATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR CAA 90 bp | AATAACTCAGCCTGTGTCCTCAGCAAGAGCATAAAATGCTCTTGTGTGCTGAGCAGGAAAATTATGAAGTaGAAGGTAGCACTCTGCATT | + |
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Preference number: 5 (lower is better) Translates to: NNSACVLSKSIKCSCVLSRKIMK*KVALCI Trigger: AATGCAGAGTGCTACCTTCAACTTCATAATTTTCCT...GCTCAGCACACAAGAGCATTTTATGCTCTTGCTGAGGACACAGGCTGAGTTATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR CAA 90 bp | TATAATTCTCACAGTATAATACAATCAAGGTTTCACCTAGTGACTGCTACACCAGGGGAAGCCGAAGTCTaGTTTTTCAGCTTCCTGCCT | + |
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Preference number: 5 (lower is better) Translates to: YNSHSIIQSRFHLVTATPGEAEV*FFSFLP Trigger: AGGCAGGAAGCTGAAAAACAAGACTTCGGCTTCCCC...TGGTGTAGCAGTCACTAGGTGAAACCTTGATTGTATTATACTGTGAGAATTATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR CAA 90 bp | GGATTTCGTGATGTCCCTACTCAAGTTCATTACAGTTGTCTCATACAAAGTCCAATTTTCCCCACCATGTaGCTGTTGAGCATAAGTACT | + |
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Preference number: 5 (lower is better) Translates to: GFRDVPTQVHYSCLIQSPIFPTM*LLSIST Trigger: AGTACTTATGCTCAACAGCAACATGGTGGGGAAAAT...TGGACTTTGTATGAGACAACTGTAATGAACTTGAGTAGGGACATCACGAAATCC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR CAA 90 bp | GGATTTCGTGATGTCCCTACTCAAGTTCATTACAGTTGTCTCATACAAAGTCCAACAAGGCAAAAGCTGTaGGGAAAAAGATTCTGGAGT | + |
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Preference number: 5 (lower is better) Translates to: GFRDVPTQVHYSCLIQSPTRQKL*GKRFWS Trigger: ACTCCAGAATCTTTTTCCCAACAGCTTTTGCCTTGT...TGGACTTTGTATGAGACAACTGTAATGAACTTGAGTAGGGACATCACGAAATCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR CAA 90 bp | GGATTTCGTGATGTCCCTACTCAAGTTCATTACAGTTGTCTCATACAAAGTCCAATAATCATCTTCCCCTaGTGGCAAAGAAATGCTGTT | + |
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Preference number: 5 (lower is better) Translates to: GFRDVPTQVHYSCLIQSPIIIFP*WQRNAV Trigger: AACAGCATTTCTTTGCCACAAGGGGAAGATGATTAT...TGGACTTTGTATGAGACAACTGTAATGAACTTGAGTAGGGACATCACGAAATCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR CAA 90 bp | GGATTTCGTGATGTCCCTACTCAAGTTCATTACAGTTGTCTCATACAAAGTCCAAGTAGGAGTCAATTTTaGCAATGCGTATGTGTATCC | + |
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Preference number: 5 (lower is better) Translates to: GFRDVPTQVHYSCLIQSPSRSQF*QCVCVS Trigger: GGATACACATACGCATTGCAAAAATTGACTCCTACT...TGGACTTTGTATGAGACAACTGTAATGAACTTGAGTAGGGACATCACGAAATCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR CAA 90 bp | GGATTTCGTGATGTCCCTACTCAAGTTCATTACAGTTGTCTCATACAAAGTCCAGCCAAGACCCATGTTTaGTTCATAGTTAAATCTTCA | + |
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Preference number: 5 (lower is better) Translates to: GFRDVPTQVHYSCLIQSPAKTHV*FIVKSS Trigger: TGAAGATTTAACTATGAACAAAACATGGGTCTTGGC...TGGACTTTGTATGAGACAACTGTAATGAACTTGAGTAGGGACATCACGAAATCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS-3UTR CAA 90 bp | TATAATTCTCACAGTATAATACAATCAAGGTTTCACCTAGTGACTGCTACACCAACTTTCATGGTGCTATaGAACTTTAAACGGCTGTCA | + |
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Preference number: 5 (lower is better) Translates to: YNSHSIIQSRFHLVTATPTFMVL*NFKRLS Trigger: TGACAGCCGTTTAAAGTTCAATAGCACCATGAAAGT...TGGTGTAGCAGTCACTAGGTGAAACCTTGATTGTATTATACTGTGAGAATTATA 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS TCA 72 bp | CTTCCCCTTGTGGCAAAGAAATGCTGTTCATGGGAATaGGAGTGGATCCAGCATGGAGACCTGGGGAAGCCG | + |
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Preference number: 6 (lower is better) Translates to: LPLVAKKCCSWE*EWIQHGDLGKP Trigger: CGGCTTCCCCAGGTCTCCATGCTGGATCCACTCTCATTCCCATGAACAGCATTTCTTTGCCACAAGGGGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS CCA 72 bp | GTTCATGGGAATGAGAGTGGATCCAGCATGGAGACCTaGGGAAGCCGAAGTCTTGTTTTTCAGCTTCCTGCC | + |
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Preference number: 6 (lower is better) Translates to: VHGNESGSSMET*GSRSLVFQLPA Trigger: GGCAGGAAGCTGAAAAACAAGACTTCGGCTTCCCCAGGTCTCCATGCTGGATCCACTCTCATTCCCATGAAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS GCA 72 bp | GGAAAAAGATTCTGGAGTAGGAGTCAATTTTTGCAATaGGTATGTGTATCCGCCCTTCCCTCCAGGACCCAG | + |
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Preference number: 6 (lower is better) Translates to: GKRFWSRSQFLQ*VCVSALPSRTQ Trigger: CTGGGTCCTGGAGGGAAGGGCGGATACACATACGCATTGCAAAAATTGACTCCTACTCCAGAATCTTTTTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS GCA 72 bp | TCTTCATCATCTGCTTTATCGACACAGTTTCCCAGATaGAGGGTTAGTAACAAGAATATCAACCTCACTCCT | + |
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Preference number: 6 (lower is better) Translates to: SSSSALSTQFPR*RVSNKNINLTP Trigger: AGGAGTGAGGTTGATATTCTTGTTACTAACCCTGCATCTGGGAAACTGTGTCGATAAAGCAGATGATGAAGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS CAA 90 bp | TGTGGGTCTCACGCCTATATCTGGACGAAGTTTGTTATCATAACCTaGAAGCAAAGAGTTGAGGATTTGTGTGATATCTCCTTCATGAAT | + |
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Preference number: 6 (lower is better) Translates to: CGSHAYIWTKFVIIT*KQRVEDLCDISFMN Trigger: ATTCATGAAGGAGATATCACACAAATCCTCAACTCTTTGCTTCAAGGTTATGATAACAAACTTCGTCCAGATATAGGCGTGAGACCCACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS CCA 72 bp | ATCTGTTTCAATCACTGTGGGTCTCACGCCTATATCTaGACGAAGTTTGTTATCATAACCTTGAAGCAAAGA | + |
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Preference number: 6 (lower is better) Translates to: ICFNHCGSHAYI*TKFVIITLKQR Trigger: TCTTTGCTTCAAGGTTATGATAACAAACTTCGTCCAGATATAGGCGTGAGACCCACAGTGATTGAAACAGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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| CDS TCA 72 bp | ATTTCAGTAGAATTTCGTAACCCTACAAATGCAAACTaGTATAATCTCCAGTACTTAGGATCAGCTACTTCC | + |
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Preference number: 6 (lower is better) Translates to: ISVEFRNPTNAN*YNLQYLGSATS Trigger: GGAAGTAGCTGATCCTAAGTACTGGAGATTATATCAGTTTGCATTTGTAGGGTTACGAAATTCTACTGAAAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031119.6 ENSMUST00000199705.2 |
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