RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GABPB2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038766

Ensembl transcript IDs: ENSMUST00000098873.11, ENSMUST00000107204.8, ENSMUST00000107209.8, ENSMUST00000136139.8

Found 388 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AGGGGAGGTCAGCAATGGGCCTGGGGTGGCTCCTTGCTGTGGCAGTaGTACCTGCTCCCTTTGTCACCTGAGCACTACAGGGCACAGACT +
Preference number: 1 (lower is better)
Translates to: RGGQQWAWGGSLLWQ*YLLPLSPEHYRAQT
Trigger: AGTCTGTGCCCTGTAGTGCTCAGGTGACAAAGGGAGCAGGTATCACTGCCACAGCAAGGAGCCACCCCAGGCCCATTGCTGACCTCCCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 90 bp AGGCTAGTTAGAATCCCAAGGACCTGCTTGCCTCTGCTCCCCAAGTaGAGGGATGAGAGCCCGTCACTGCTCCATCTGGTCATTTCCGGG +
Preference number: 1 (lower is better)
Translates to: RLVRIPRTCLPLLPK*RDESPSLLHLVISG
Trigger: CCCGGAAATGACCAGATGGAGCAGTGACGGGCTCTCATCCCTGCACTTGGGGAGCAGAGGCAAGCAGGTCCTTGGGATTCTAACTAGCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 90 bp GACTCAGAGCCCAGAAGCCTCTCTCTGGAAGCACAGCCTGGAGGGTaGTGCTCTGCACATAGCTTCTACCCATCAGCAGCACAGCTTCTC +
Preference number: 1 (lower is better)
Translates to: DSEPRSLSLEAQPGG*CSAHSFYPSAAQLL
Trigger: GAGAAGCTGTGCTGCTGATGGGTAGAAGCTATGTGCAGAGCAGCACCCTCCAGGCTGTGCTTCCAGAGAGAGGCTTCTGGGCTCTGAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 90 bp CTGTACAGCCCTAGGCTGCCTGGAACTCAGAGATCCACCTGTCTCTaGCTCCTGAGTGCAATATTAAAGGTGTGTGCCCCACGCCTGGCT +
Preference number: 1 (lower is better)
Translates to: LYSPRLPGTQRSTCL*LLSAILKVCAPRLA
Trigger: AGCCAGGCGTGGGGCACACACCTTTAATATTGCACTCAGGAGGCAGAGACAGGTGGATCTCTGAGTTCCAGGCAGCCTAGGGCTGTACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 90 bp GTTTCCATCTCAAGACCAGAGACTCAGAGCCCAGAAGCCTCTCTCTaGAAGCACAGCCTGGAGGGTGCTGCTCTGCACATAGCTTCTACC +
Preference number: 1 (lower is better)
Translates to: VSISRPETQSPEASL*KHSLEGAALHIAST
Trigger: GGTAGAAGCTATGTGCAGAGCAGCACCCTCCAGGCTGTGCTTCCAGAGAGAGGCTTCTGGGCTCTGAGTCTCTGGTCTTGAGATGGAAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 90 bp GGACACTGTGAAAAGAATCCTGGGCTACCCACCCCTACATGGCCTTaGCAGAAGGACACATTGAGCAAGGCCAGGGAGCAGAGTTGCTAC +
Preference number: 1 (lower is better)
Translates to: GHCEKNPGLPTPTWP*QKDTLSKAREQSCY
Trigger: GTAGCAACTCTGCTCCCTGGCCTTGCTCAATGTGTCCTTCTGCCAAGGCCATGTAGGGGTGGGTAGCCCAGGATTCTTTTCACAGTGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 90 bp TGTGAAGACAGGGTCCCACTGTGTAGCCTTGCCTGGCCTGGAACTTaGTACGTAGACCACATGGCCTTGAACTCAACAGAGATCTGCCTG +
Preference number: 1 (lower is better)
Translates to: CEDRVPLCSLAWPGT*YVDHMALNSTEICL
Trigger: CAGGCAGATCTCTGTTGAGTTCAAGGCCATGTGGTCTACGTACCAAGTTCCAGGCCAGGCAAGGCTACACAGTGGGACCCTGTCTTCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 90 bp ACAAGAGGACACTGTGAAAAGAATCCTGGGCTACCCACCCCTACATaGCCTTGGCAGAAGGACACATTGAGCAAGGCCAGGGAGCAGAGT +
Preference number: 1 (lower is better)
Translates to: TRGHCEKNPGLPTPT*PWQKDTLSKAREQS
Trigger: ACTCTGCTCCCTGGCCTTGCTCAATGTGTCCTTCTGCCAAGGCCATGTAGGGGTGGGTAGCCCAGGATTCTTTTCACAGTGTCCTCTTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 90 bp TCCCCAGCCTGGTCAGTCTGCCACACTGCTTTGTGTTTGACAGAGTaGTCAGTGCTACAGAAAGCACCAGTGTCCCACATGACACAGAAA +
Preference number: 1 (lower is better)
Translates to: SPAWSVCHTALCLTE*SVLQKAPVSHMTQK
Trigger: TTTCTGTGTCATGTGGGACACTGGTGCTTTCTGTAGCACTGAGCACTCTGTCAAACACAAAGCAGTGTGGCAGACTGACCAGGCTGGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 90 bp AAATCAACAGGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACTaGTTTGTGTTTGACAGAGTGCTCAGTGCTACAGAAAGCACCAGT +
Preference number: 1 (lower is better)
Translates to: KSTGANLPSLVSLPH*FVFDRVLSATESTS
Trigger: ACTGGTGCTTTCTGTAGCACTGAGCACTCTGTCAAACACAAAGCAGTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 90 bp TGCTCTGCTATATGTGAAGACAGGGTCCCACTGTGTAGCCTTGCCTaGCCTGGAACTTGGTACGTAGACCACATGGCCTTGAACTCAACA +
Preference number: 1 (lower is better)
Translates to: CSAICEDRVPLCSLA*PGTWYVDHMALNST
Trigger: TGTTGAGTTCAAGGCCATGTGGTCTACGTACCAAGTTCCAGGCCAGGCAAGGCTACACAGTGGGACCCTGTCTTCACATATAGCAGAGCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 90 bp TTCAGGCTGGCCTTGCACTCATGTCAACCCTCCTCCTATAGCTCTTaGCTGCTAACAGGCATGAGTACCGTGCCCAGCTATACAAACACA +
Preference number: 1 (lower is better)
Translates to: FRLALHSCQPSSYSS*LLTGMSTVPSYTNT
Trigger: TGTGTTTGTATAGCTGGGCACGGTACTCATGCCTGTTAGCAGTCAAGAGCTATAGGAGGAGGGTTGACATGAGTGCAAGGCCAGCCTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 90 bp GTCTACTTCCCGAGTGCTGGAACTCAAGGCATGTGTCACCACATCTaGCCCTCTTTTATTGAAGGACTCTCTTTAGCTCAGGCTGACCTC +
Preference number: 1 (lower is better)
Translates to: VYFPSAGTQGMCHHI*PSFIEGLSLAQADL
Trigger: GAGGTCAGCCTGAGCTAAAGAGAGTCCTTCAATAAAAGAGGGCCAGATGTGGTGACACATGCCTTGAGTTCCAGCACTCGGGAAGTAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 90 bp GGAGACTTTGAGCAGCAGGACGAAGAAAGGAAGATGTCTGGATTGTaGAGCTGCCTGAAAGCTGGGCAGCTCTCAGAACCAGAAAAGATC +
Preference number: 1 (lower is better)
Translates to: GDFEQQDEERKMSGL*SCLKAGQLSEPEKI
Trigger: GATCTTTTCTGGTTCTGAGAGCTGCCCAGCTTTCAGGCAGCTCCACAATCCAGACATCTTCCTTTCTTCGTCCTGCTGCTCAAAGTCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
3UTR GCA 90 bp ATAGTCTCTGTGGTCCATGTTGCCCTAGAGTACATCTCACTGTATTaGCTAGAAGTCTCATCTGAGACCCCCAGTGATCCTCTGAGTGGG +
Preference number: 1 (lower is better)
Translates to: IVSVVHVALEYISLY*LEVSSETPSDPLSG
Trigger: CCCACTCAGAGGATCACTGGGGGTCTCAGATGAGACTTCTAGGCAATACAGTGAGATGTACTCTAGGGCAACATGGACCACAGAGACTAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 90 bp AGCAGCAGGACGAAGAAAGGAAGATGTCTGGATTGTGGAGCTGCCTaGAAGCTGGGCAGCTCTCAGAACCAGAAAAGATCTGTAGTCTTT +
Preference number: 1 (lower is better)
Translates to: SSRTKKGRCLDCGAA*KLGSSQNQKRSVVF
Trigger: AAAGACTACAGATCTTTTCTGGTTCTGAGAGCTGCCCAGCTTTCAGGCAGCTCCACAATCCAGACATCTTCCTTTCTTCGTCCTGCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
3UTR GCA 90 bp AGCTTCTCTCCTGAGTTTAAGTCTGCTGTCAACGGTTTTCTTCCCTaGACTTCTGCCCTCCTCTCGCTGTGTACATACAGTGTCAAAGGA +
Preference number: 1 (lower is better)
Translates to: SFSPEFKSAVNGFLP*TSALLSLCTYSVKG
Trigger: TCCTTTGACACTGTATGTACACAGCGAGAGGAGGGCAGAAGTGCAGGGAAGAAAACCGTTGACAGCAGACTTAAACTCAGGAGAGAAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 90 bp TTTGAGCAGCAGGACGAAGAAAGGAAGATGTCTGGATTGTGGAGCTaGCTGAAAGCTGGGCAGCTCTCAGAACCAGAAAAGATCTGTAGT +
Preference number: 1 (lower is better)
Translates to: FEQQDEERKMSGLWS*LKAGQLSEPEKICS
Trigger: ACTACAGATCTTTTCTGGTTCTGAGAGCTGCCCAGCTTTCAGGCAGCTCCACAATCCAGACATCTTCCTTTCTTCGTCCTGCTGCTCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
3UTR CCA 90 bp CCTTCGTGTAGCCCGGGATGGCCTCTAACTCTGAATCCCAAGTGCTaGGATTTCTCACGTTGCCCTGTGCTTGACTATTCAATAATAATC +
Preference number: 1 (lower is better)
Translates to: PSCSPGWPLTLNPKC*DFSRCPVLDYSIII
Trigger: GATTATTATTGAATAGTCAAGCACAGGGCAACGTGAGAAATCCCAGCACTTGGGATTCAGAGTTAGAGGCCATCCCGGGCTACACGAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 90 bp CTGACAAGGAGCCTTTGCATTTATTTTCTTGCTTCCCCACGAACATaGACCATCTCCTCGGGCCTCAACTTCCTTAATGCTCCCTCTACA +
Preference number: 1 (lower is better)
Translates to: LTRSLCIYFLASPRT*TISSGLNFLNAPST
Trigger: TGTAGAGGGAGCATTAAGGAAGTTGAGGCCCGAGGAGATGGTCCATGTTCGTGGGGAAGCAAGAAAATAAATGCAAAGGCTCCTTGTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 90 bp GTGACCAGAGTTCACCACGTGCCTCAGTTCTTACAGCATTGGAAGTaGCTGATGTTAGGGGATGTCCACCTTGGCATTCTTAGAATGAGT +
Preference number: 1 (lower is better)
Translates to: VTRVHHVPQFLQHWK*LMLGDVHLGILRMS
Trigger: ACTCATTCTAAGAATGCCAAGGTGGACATCCCCTAACATCAGCCACTTCCAATGCTGTAAGAACTGAGGCACGTGGTGAACTCTGGTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 90 bp CAGAAAGTGACCAGAGTTCACCACGTGCCTCAGTTCTTACAGCATTaGAAGTGGCTGATGTTAGGGGATGTCCACCTTGGCATTCTTAGA +
Preference number: 1 (lower is better)
Translates to: QKVTRVHHVPQFLQH*KWLMLGDVHLGILR
Trigger: TCTAAGAATGCCAAGGTGGACATCCCCTAACATCAGCCACTTCCAATGCTGTAAGAACTGAGGCACGTGGTGAACTCTGGTCACTTTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 90 bp TTGTACATAAAGCTGCCAGACAACTTGAAAAACAAGAGGACACTGTaGAAAGAATCCTGGGCTACCCACCCCTACATGGCCTTGGCAGAA +
Preference number: 1 (lower is better)
Translates to: LYIKLPDNLKNKRTL*KESWATHPYMALAE
Trigger: TTCTGCCAAGGCCATGTAGGGGTGGGTAGCCCAGGATTCTTTTCACAGTGTCCTCTTGTTTTTCAAGTTGTCTGGCAGCTTTATGTACAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 90 bp GGGATGAGAGCCCGTCACTGCTCCATCTGGTCATTTCCGGGTTTTTaGTGTTATTTTGAGAAAGATCTCACTGAAGCCAAAGCTGATCTT +
Preference number: 1 (lower is better)
Translates to: GMRARHCSIWSFPGF*CYFEKDLTEAKADL
Trigger: AAGATCAGCTTTGGCTTCAGTGAGATCTTTCTCAAAATAACAGCAAAAACCCGGAAATGACCAGATGGAGCAGTGACGGGCTCTCATCCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 90 bp AACTCAGAGACCTCATGCTCAAAAGTGACTTGGAACAATGAAACTTaGTCCTCCTTAAAGGTGGAAAGAAGCCCTGCTCAGAAGGGAGGA +
Preference number: 1 (lower is better)
Translates to: NSETSCSKVTWNNET*SSLKVERSPAQKGG
Trigger: TCCTCCCTTCTGAGCAGGGCTTCTTTCCACCTTTAAGGAGGACCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 90 bp TGGTGTAAATTCATCTGCTCAAGTAGAGAACTGCAAGCTACTCTCTaGAACATCAGGACAGAAAGTGACCAGAGTTCACCACGTGCCTCA +
Preference number: 1 (lower is better)
Translates to: WCKFICSSRELQATL*NIRTESDQSSPRAS
Trigger: TGAGGCACGTGGTGAACTCTGGTCACTTTCTGTCCTGATGTTTCAGAGAGTAGCTTGCAGTTCTCTACTTGAGCAGATGAATTTACACCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 90 bp ACTAGGGATACAGGTGCACCTGAGACCATGCATGGTTTGTTAGAGTaGGTGCTAAGATCTGAATTTGGACCTTCAAATTTGTATATAGCA +
Preference number: 1 (lower is better)
Translates to: TRDTGAPETMHGLLE*VLRSEFGPSNLYIA
Trigger: TGCTATATACAAATTTGAAGGTCCAAATTCAGATCTTAGCACCCACTCTAACAAACCATGCATGGTCTCAGGTGCACCTGTATCCCTAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 90 bp AGCACCAGAGGCTCAAAGCTATTTAATTCTAATTCACATCCTTCTTaGTTTTGGTCTCCTGGTAAGGATAGTCACAAGAAATGGAGCACA +
Preference number: 1 (lower is better)
Translates to: STRGSKLFNSNSHPS*FWSPGKDSHKKWST
Trigger: TGTGCTCCATTTCTTGTGACTATCCTTACCAGGAGACCAAAAGCAAGAAGGATGTGAATTAGAATTAAATAGCTTTGAGCCTCTGGTGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 90 bp CAGAACCAGAAAAGATCTGTAGTCTTTAGCTTTGCAAAGACTACTTaGGAGGCTAGCTTTAGCTTTGGCTTTATAGTAAGACTCTATCTC +
Preference number: 1 (lower is better)
Translates to: QNQKRSVVFSFAKTT*EASFSFGFIVRLYL
Trigger: GAGATAGAGTCTTACTATAAAGCCAAAGCTAAAGCTAGCCTCTCAAGTAGTCTTTGCAAAGCTAAAGACTACAGATCTTTTCTGGTTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
3UTR GCA 90 bp GCAACAAATTATCCCACTAATCAAGGTAACCAGAACCATGTTAACTaGCAAGCTCTTTCCAGGTTAAAAATGCATGTTTTCTTCATGATC +
Preference number: 1 (lower is better)
Translates to: ATNYPTNQGNQNHVN*QALSRLKMHVFFMI
Trigger: GATCATGAAGAAAACATGCATTTTTAACCTGGAAAGAGCTTGGCAGTTAACATGGTTCTGGTTACCTTGATTAGTGGGATAATTTGTTGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp ACTAAATCAACAGGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACTGCTTTCCTAGGCTCAGGCCTTaGGCCCGGCTATTGTTACCC +
Preference number: 2 (lower is better)
Translates to: TKSTGANLPSLVSLPHCFPRLRP*ARLLLP
Trigger: GGGTAACAATAGCCGGGCTCAAGGCCTGAGCCTAGG...AAAGCAGTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTTAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp ACTAAATCAACAGGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACTGCTTTCCTCTGCTCCCCAAGTaGAGGGATGAGAGCCCGTCA +
Preference number: 2 (lower is better)
Translates to: TKSTGANLPSLVSLPHCFPLLPK*RDESPS
Trigger: TGACGGGCTCTCATCCCTGCACTTGGGGAGCAGAGG...AAAGCAGTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTTAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CAA 90 bp GGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACTGCTTTGTGTTaGACAGAGTGCTCAGTGCTACAGAAAGCACCAGTGTCCCACATG +
Preference number: 2 (lower is better)
Translates to: GQTSPAWSVCHTALC*TECSVLQKAPVSHM
Trigger: CATGTGGGACACTGGTGCTTTCTGTAGCACTGAGCACTCTGTCAAACACAAAGCAGTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GTCCTCCATTACTTTCTGCCTGTTCACTTGAGACAGCGTCTCTCCCTGAACCTGCCTGGGGTGGCTCCTTaGTGTGGCAGTGATACCTGC +
Preference number: 2 (lower is better)
Translates to: VLHYFLPVHLRQRLSLNLPGVAP*CGSDTC
Trigger: GCAGGTATCACTGCCACAGCAAGGAGCCACCCCAGG...CAGGTTCAGGGAGAGACGCTGTCTCAAGTGAACAGGCAGAAAGTAATGGAGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp ACTAAATCAACAGGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACTGCTTTTCTGGAAGCACAGCCTaGAGGGTGCTGCTCTGCACA +
Preference number: 2 (lower is better)
Translates to: TKSTGANLPSLVSLPHCFSGSTA*RVLLCT
Trigger: TGTGCAGAGCAGCACCCTCCAGGCTGTGCTTCCAGA...AAAGCAGTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTTAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CAA 90 bp GGGCATGATCCCTGGGAGCTGGATGGACATGTAATTGTGAGCAGCTaGACTCGGGTGCTAGGAATGGAACCCAGGTTCTCTGGAAGAGCA +
Preference number: 2 (lower is better)
Translates to: GHDPWELDGHVIVSS*TRVLGMEPRFSGRA
Trigger: TGCTCTTCCAGAGAACCTGGGTTCCATTCCTAGCACCCGAGTCAAGCTGCTCACAATTACATGTCCATCCAGCTCCCAGGGATCATGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp ACTCACACTAAATCAACAGGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACCCCCTAAAGTGGCTCTaGGTTTTCCAGCTGCACACA +
Preference number: 2 (lower is better)
Translates to: THTKSTGANLPSLVSLPHPLKWL*VFQLHT
Trigger: TGTGTGCAGCTGGAAAACTCAGAGCCACTTTAGGGG...GTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTTAGTGTGAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GTCCTCCATTACTTTCTGCCTGTTCACTTGAGACAGCGTCTCTCCCTGAACCTGTCCCAAGGACCTGCTTaGCTCTGCTCCCCAAGTGCA +
Preference number: 2 (lower is better)
Translates to: VLHYFLPVHLRQRLSLNLSQGPA*LCSPSA
Trigger: TGCACTTGGGGAGCAGAGGCAAGCAGGTCCTTGGGA...CAGGTTCAGGGAGAGACGCTGTCTCAAGTGAACAGGCAGAAAGTAATGGAGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp ACTCACACTAAATCAACAGGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACAACGGTTTTCTTCCCTaGACTTCTGCCCTCCTCTCG +
Preference number: 2 (lower is better)
Translates to: THTKSTGANLPSLVSLPHNGFLP*TSALLS
Trigger: CGAGAGGAGGGCAGAAGTGCAGGGAAGAAAACCGTT...GTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTTAGTGTGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCCGCCGTCTGACCTCTTaGCTCCCTCGCCCAGTTCTG +
Preference number: 2 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSRRLTS*LPRPVL
Trigger: CAGAACTGGGCGAGGGAGGCAAGAGGTCAGACGGCG...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp GTGGTTTTTGAGACAGGTTCACACAATGTAGTTCAGGCTGGCCTTGCACTCATGGGTCAGCAATGGGCCTaGGGTGGCTCCTTGCTGTGG +
Preference number: 2 (lower is better)
Translates to: VVFETGSHNVVQAGLALMGQQWA*GGSLLW
Trigger: CCACAGCAAGGAGCCACCCCAGGCCCATTGCTGACC...CATGAGTGCAAGGCCAGCCTGAACTACATTGTGTGAACCTGTCTCAAAAACCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCGGTCAGCAATGGGCCTaGGGTGGCTCCTTGCTGTGG +
Preference number: 2 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSGQQWA*GGSLLW
Trigger: CCACAGCAAGGAGCCACCCCAGGCCCATTGCTGACC...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGAGGGGAGGTCAGCAATaGGCCTGGGGTGGCTCCTTG +
Preference number: 2 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWRGGQQ*AWGGSL
Trigger: CAAGGAGCCACCCCAGGCCCATTGCTGACCTCCCCT...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp GAGGAACAGACGCCGGGAAGATTCTTGAAAGCCCCACTAACAGTAAAGGGAGCATGGGGGAGGAGACTTTaGGCAGCAGGACGAAGAAAG +
Preference number: 2 (lower is better)
Translates to: EEQTPGRFLKAPLTVKGAWGRRL*AAGRRK
Trigger: CTTTCTTCGTCCTGCTGCTCAAAGTCTCCTCCCCCA...TGCTCCCTTTACTGTTAGTGGGGCTTTCAAGAATCTTCCCGGCGTCTGTTCCTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
3UTR-3UTR GCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGCCTCTGCTCCCCAAGTaGAGGGATGAGAGCCCGTCA +
Preference number: 2 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWPLLPK*RDESPS
Trigger: TGACGGGCTCTCATCCCTGCACTTGGGGAGCAGAGG...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp GTCCTCCATTACTTTCTGCCTGTTCACTTGAGACAGCGTCTCTCCCTGAACCTGGCTGTAATCCCCACTTaGAGGGTCACTGGACCCTCT +
Preference number: 2 (lower is better)
Translates to: VLHYFLPVHLRQRLSLNLAVIPT*RVTGPS
Trigger: AGAGGGTCCAGTGACCCTCCAAGTGGGGATTACAGC...CAGGTTCAGGGAGAGACGCTGTCTCAAGTGAACAGGCAGAAAGTAATGGAGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGTGGCCTTCTCCCTGCTaGAGGCCCAGCTCTGAACAC +
Preference number: 2 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWWPSPC*RPSSEH
Trigger: GTGTTCAGAGCTGGGCCTCCAGCAGGGAGAAGGCCA...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CAA 90 bp GGAGGAGACTTTGAGCAGCAGGACGAAGAAAGGAAGATGTCTGGATaGTGGAGCTGCCTGAAAGCTGGGCAGCTCTCAGAACCAGAAAAG +
Preference number: 2 (lower is better)
Translates to: GGDFEQQDEERKMSG*WSCLKAGQLSEPEK
Trigger: CTTTTCTGGTTCTGAGAGCTGCCCAGCTTTCAGGCAGCTCCACAATCCAGACATCTTCCTTTCTTCGTCCTGCTGCTCAAAGTCTCCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
3UTR-3UTR TCA 90 bp GTCCTCCATTACTTTCTGCCTGTTCACTTGAGACAGCGTCTCTCCCTGAACCTGACACTAGATCATCCCTaGTGCTCAGATCCCTGGAGC +
Preference number: 2 (lower is better)
Translates to: VLHYFLPVHLRQRLSLNLTLDHP*CSDPWS
Trigger: GCTCCAGGGATCTGAGCATCAGGGATGATCTAGTGT...CAGGTTCAGGGAGAGACGCTGTCTCAAGTGAACAGGCAGAAAGTAATGGAGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp ACTAAATCAACAGGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACTGCTTTTCTGAGTTTTCCAGCTaGACACACAGCCTTCCTAGG +
Preference number: 2 (lower is better)
Translates to: TKSTGANLPSLVSLPHCFSEFSS*THSLPR
Trigger: CCTAGGAAGGCTGTGTGTGCAGCTGGAAAACTCAGA...AAAGCAGTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTTAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GTCCTCCATTACTTTCTGCCTGTTCACTTGAGACAGCGTCTCTCCCTGAACCTGGTCTCACCTCCCAAGTaGTGGGATTATAGGCTGTGC +
Preference number: 2 (lower is better)
Translates to: VLHYFLPVHLRQRLSLNLVSPPK*WDYRLC
Trigger: GCACAGCCTATAATCCCAGCACTTGGGAGGTGAGAC...CAGGTTCAGGGAGAGACGCTGTCTCAAGTGAACAGGCAGAAAGTAATGGAGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GTGGTTTTTGAGACAGGTTCACACAATGTAGTTCAGGCTGGCCTTGCACTCATGTCCCAAGGACCTGCTTaGCTCTGCTCCCCAAGTGCA +
Preference number: 2 (lower is better)
Translates to: VVFETGSHNVVQAGLALMSQGPA*LCSPSA
Trigger: TGCACTTGGGGAGCAGAGGCAAGCAGGTCCTTGGGA...CATGAGTGCAAGGCCAGCCTGAACTACATTGTGTGAACCTGTCTCAAAAACCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GACAGAGTGCTCAGTGCTACAGAAAGCACCAGTGTCCCACATGACACAGAAAATTCCCAAGGACCTGCTTaGCTCTGCTCCCCAAGTGCA +
Preference number: 2 (lower is better)
Translates to: DRVLSATESTSVPHDTENSQGPA*LCSPSA
Trigger: TGCACTTGGGGAGCAGAGGCAAGCAGGTCCTTGGGA...ATTTTCTGTGTCATGTGGGACACTGGTGCTTTCTGTAGCACTGAGCACTCTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GTCCTCCATTACTTTCTGCCTGTTCACTTGAGACAGCGTCTCTCCCTGAACCTGAACGGTTTTCTTCCCTaGACTTCTGCCCTCCTCTCG +
Preference number: 2 (lower is better)
Translates to: VLHYFLPVHLRQRLSLNLNGFLP*TSALLS
Trigger: CGAGAGGAGGGCAGAAGTGCAGGGAAGAAAACCGTT...CAGGTTCAGGGAGAGACGCTGTCTCAAGTGAACAGGCAGAAAGTAATGGAGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGCCAGAAGCCTCTCTCTaGAAGCACAGCCTGGAGGGT +
Preference number: 2 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWPEASL*KHSLEG
Trigger: ACCCTCCAGGCTGTGCTTCCAGAGAGAGGCTTCTGG...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp GACAGAGTGCTCAGTGCTACAGAAAGCACCAGTGTCCCACATGACACAGAAAATCCAGAAGCCTCTCTCTaGAAGCACAGCCTGGAGGGT +
Preference number: 2 (lower is better)
Translates to: DRVLSATESTSVPHDTENPEASL*KHSLEG
Trigger: ACCCTCCAGGCTGTGCTTCCAGAGAGAGGCTTCTGG...ATTTTCTGTGTCATGTGGGACACTGGTGCTTTCTGTAGCACTGAGCACTCTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp GTGGTTTTTGAGACAGGTTCACACAATGTAGTTCAGGCTGGCCTTGCACTCATGCAAACCTCCCCAGCCTaGTCAGTCTGCCACACTGCT +
Preference number: 2 (lower is better)
Translates to: VVFETGSHNVVQAGLALMQTSPA*SVCHTA
Trigger: AGCAGTGTGGCAGACTGACCAGGCTGGGGAGGTTTG...CATGAGTGCAAGGCCAGCCTGAACTACATTGTGTGAACCTGTCTCAAAAACCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp GGATTACAGGCACGAGGCACAATGCTCAGGTGTCTAATTTTTGTGGTTTTTGAGGCAATGGGCCTGGGGTaGCTCCTTGCTGTGGCAGTG +
Preference number: 2 (lower is better)
Translates to: GLQARGTMLRCLIFVVFEAMGLG*LLAVAV
Trigger: CACTGCCACAGCAAGGAGCCACCCCAGGCCCATTGC...CTCAAAAACCACAAAAATTAGACACCTGAGCATTGTGCCTCGTGCCTGTAATCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp GGGAAGATTCTTGAAAGCCCCACTAACAGTAAAGGGAGCAAAGAGTTGTGGGGGGAGCTGCCTGAAAGCTaGGCAGCTCTCAGAACCAGA +
Preference number: 2 (lower is better)
Translates to: GKILESPTNSKGSKELWGELPES*AALRTR
Trigger: TCTGGTTCTGAGAGCTGCCCAGCTTTCAGGCAGCTC...CCCCCACAACTCTTTGCTCCCTTTACTGTTAGTGGGGCTTTCAAGAATCTTCCC
52% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
3UTR CAA 90 bp TCTCGCTGTGTACATACAGTGTCAAAGGACGAACCCAGGGCTTCCTaGCAAGCTAAGCACCACGTTCTACCACTGAACTATGTCCTCAGG +
Preference number: 2 (lower is better)
Translates to: SRCVHTVSKDEPRAS*QAKHHVLPLNYVLR
Trigger: CCTGAGGACATAGTTCAGTGGTAGAACGTGGTGCTTAGCTTGCAAGGAAGCCCTGGGTTCGTCCTTTGACACTGTATGTACACAGCGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp GGATTACAGGCACGAGGCACAATGCTCAGGTGTCTAATTTTTGTGGTTTTTGAGCCTAGGCTCAGGCCTTaGGCCCGGCTATTGTTACCC +
Preference number: 2 (lower is better)
Translates to: GLQARGTMLRCLIFVVFEPRLRP*ARLLLP
Trigger: GGGTAACAATAGCCGGGCTCAAGGCCTGAGCCTAGG...CTCAAAAACCACAAAAATTAGACACCTGAGCATTGTGCCTCGTGCCTGTAATCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp GTCCTCCATTACTTTCTGCCTGTTCACTTGAGACAGCGTCTCTCCCTGAACCTGAGCAACGATATGAGCTaGGAGATTTGGTCCTGGTCC +
Preference number: 2 (lower is better)
Translates to: VLHYFLPVHLRQRLSLNLSNDMS*EIWSWS
Trigger: GGACCAGGACCAAATCTCTCAGCTCATATCGTTGCT...CAGGTTCAGGGAGAGACGCTGTCTCAAGTGAACAGGCAGAAAGTAATGGAGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGCCTGTTGCAGCTTCCTaGGTGCTGACATCACAGGTG +
Preference number: 2 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWPVAAS*VLTSQV
Trigger: CACCTGTGATGTCAGCACTCAGGAAGCTGCAACAGG...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCCCTGTTGCAGCTTCCTaGGTGCTGACATCACAGGTG +
Preference number: 2 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSPVAAS*VLTSQV
Trigger: CACCTGTGATGTCAGCACTCAGGAAGCTGCAACAGG...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp ACTCACACTAAATCAACAGGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACCAAATAACTTCCTGTTaGAGCTTCCTGAGTGCTGAC +
Preference number: 2 (lower is better)
Translates to: THTKSTGANLPSLVSLPHQITSC*SFLSAD
Trigger: GTCAGCACTCAGGAAGCTGCAACAGGAAGTTATTTG...GTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTTAGTGTGAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GTGGTTTTTGAGACAGGTTCACACAATGTAGTTCAGGCTGGCCTTGCACTCATGTCTTCCCTGCACTTCTaGCCTCCTCTCGCTGTGTAC +
Preference number: 2 (lower is better)
Translates to: VVFETGSHNVVQAGLALMSSLHF*PPLAVY
Trigger: GTACACAGCGAGAGGAGGGCAGAAGTGCAGGGAAGA...CATGAGTGCAAGGCCAGCCTGAACTACATTGTGTGAACCTGTCTCAAAAACCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CAA 90 bp GGTGGCTCACTTTGGTCCCTATCACTGTGCACTGACAAGGAGCCTTaGCATTTATTTTCTTGCTTCCCCACGAACATGGACCATCTCCTC +
Preference number: 2 (lower is better)
Translates to: GGSLWSLSLCTDKEP*HLFSCFPTNMDHLL
Trigger: GAGGAGATGGTCCATGTTCGTGGGGAAGCAAGAAAATAAATGCAAAGGCTCCTTGTCAGTGCACAGTGATAGGGACCAAAGTGAGCCACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp GTGGTTTTTGAGACAGGTTCACACAATGTAGTTCAGGCTGGCCTTGCACTCATGGTGCTCTGCTATATGTaGAGACAGGGTCCCACTGTG +
Preference number: 2 (lower is better)
Translates to: VVFETGSHNVVQAGLALMVLCYM*RQGPTV
Trigger: CACAGTGGGACCCTGTCTTCACATATAGCAGAGCAC...CATGAGTGCAAGGCCAGCCTGAACTACATTGTGTGAACCTGTCTCAAAAACCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCGTGCTCTGCTATATGTaGAGACAGGGTCCCACTGTG +
Preference number: 2 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSVLCYM*RQGPTV
Trigger: CACAGTGGGACCCTGTCTTCACATATAGCAGAGCAC...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp GGATTACAGGCACGAGGCACAATGCTCAGGTGTCTAATTTTTGTGGTTTTTGAGTGCCAGAAAAGGGCATaGTCCCTGGGAGCTGGATGG +
Preference number: 2 (lower is better)
Translates to: GLQARGTMLRCLIFVVFECQKRA*SLGAGW
Trigger: CCATCCAGCTCCCAGGGATCATGCCCTTTTCTGGCA...CTCAAAAACCACAAAAATTAGACACCTGAGCATTGTGCCTCGTGCCTGTAATCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGACTTCCTCTGCTACGTaGTTCCCACTAACCCAGCTC +
Preference number: 2 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWTSSAT*FPLTQL
Trigger: GAGCTGGGTTAGTGGGAATCACGTAGCAGAGGAAGT...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GACAGAGTGCTCAGTGCTACAGAAAGCACCAGTGTCCCACATGACACAGAAAATATGAGAGCCCGTCACTaGTCCATCTGGTCATTTCCG +
Preference number: 2 (lower is better)
Translates to: DRVLSATESTSVPHDTENMRARH*SIWSFP
Trigger: CGGAAATGACCAGATGGAGCAGTGACGGGCTCTCAT...ATTTTCTGTGTCATGTGGGACACTGGTGCTTTCTGTAGCACTGAGCACTCTGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGATGAGAGCCCGTCACTaGTCCATCTGGTCATTTCCG +
Preference number: 2 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWMRARH*SIWSFP
Trigger: CGGAAATGACCAGATGGAGCAGTGACGGGCTCTCAT...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp ATGTGCTCTAAGGATGTAAACAAAAGCCACCTACAAAGAAACCTGCTCCCTCTAGGACCTGCTTGCCTCTaGTCCCCAAGTGCAGGGATG +
Preference number: 2 (lower is better)
Translates to: MCSKDVNKSHLQRNLLPLGPACL*SPSAGM
Trigger: CATCCCTGCACTTGGGGAGCAGAGGCAAGCAGGTCC...TAGAGGGAGCAGGTTTCTTTGTAGGTGGCTTTTGTTTACATCCTTAGAGCACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GTGGTTTTTGAGACAGGTTCACACAATGTAGTTCAGGCTGGCCTTGCACTCATGCCAGCCTGGTCAGTCTaGCACACTGCTTTGTGTTTG +
Preference number: 2 (lower is better)
Translates to: VVFETGSHNVVQAGLALMPAWSV*HTALCL
Trigger: CAAACACAAAGCAGTGTGGCAGACTGACCAGGCTGG...CATGAGTGCAAGGCCAGCCTGAACTACATTGTGTGAACCTGTCTCAAAAACCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp ATGTGCTCTAAGGATGTAAACAAAAGCCACCTACAAAGAAACCTGCTCCCTCTACCTGGGGTGGCTCCTTaGTGTGGCAGTGATACCTGC +
Preference number: 2 (lower is better)
Translates to: MCSKDVNKSHLQRNLLPLPGVAP*CGSDTC
Trigger: GCAGGTATCACTGCCACAGCAAGGAGCCACCCCAGG...TAGAGGGAGCAGGTTTCTTTGTAGGTGGCTTTTGTTTACATCCTTAGAGCACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GTCCTCCATTACTTTCTGCCTGTTCACTTGAGACAGCGTCTCTCCCTGAACCTGACTCTGAATCCCAAGTaGTGGGATTTCTCACGTTGC +
Preference number: 2 (lower is better)
Translates to: VLHYFLPVHLRQRLSLNLTLNPK*WDFSRC
Trigger: GCAACGTGAGAAATCCCAGCACTTGGGATTCAGAGT...CAGGTTCAGGGAGAGACGCTGTCTCAAGTGAACAGGCAGAAAGTAATGGAGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp GGATTACAGGCACGAGGCACAATGCTCAGGTGTCTAATTTTTGTGGTTTTTGAGCCAGAAGCCTCTCTCTaGAAGCACAGCCTGGAGGGT +
Preference number: 2 (lower is better)
Translates to: GLQARGTMLRCLIFVVFEPEASL*KHSLEG
Trigger: ACCCTCCAGGCTGTGCTTCCAGAGAGAGGCTTCTGG...CTCAAAAACCACAAAAATTAGACACCTGAGCATTGTGCCTCGTGCCTGTAATCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp TCTTTTTGCCTATCCATTGAGCCATTTCTCCAGCCGCATCTTTTGTTTCTAAGAGGTCAGCAATGGGCCTaGGGTGGCTCCTTGCTGTGG +
Preference number: 2 (lower is better)
Translates to: SFCLSIEPFLQPHLLFLRGQQWA*GGSLLW
Trigger: CCACAGCAAGGAGCCACCCCAGGCCCATTGCTGACC...TCTTAGAAACAAAAGATGCGGCTGGAGAAATGGCTCAATGGATAGGCAAAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCGAAGGGAGGACTAGATaGACAGATCCCATCCCCACA +
Preference number: 2 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSEGRTR*TDPIPT
Trigger: TGTGGGGATGGGATCTGTCCATCTAGTCCTCCCTTC...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp CCCTCAGATGCCCCTAAAGTGGCTCTGAGTTTTCCAGCTGCACACACAGCCTTCAAAGAATATGATGAGTaGGCACAAGTTGTAGCCGTT +
Preference number: 2 (lower is better)
Translates to: PSDAPKVALSFPAAHTAFKEYDE*AQVVAV
Trigger: AACGGCTACAACTTGTGCTCACTCATCATATTCTTT...GAAGGCTGTGTGTGCAGCTGGAAAACTCAGAGCCACTTTAGGGGCATCTGAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAGCAACGATATGAGCTaGGAGATTTGGTCCTGGTCC +
Preference number: 2 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSSNDMS*EIWSWS
Trigger: GGACCAGGACCAAATCTCTCAGCTCATATCGTTGCT...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp ATGTGCTCTAAGGATGTAAACAAAAGCCACCTACAAAGAAACCTGCTCCCTCTAGCTCCCTTTGTCACCTaGGCACTACAGGGCACAGAC +
Preference number: 2 (lower is better)
Translates to: MCSKDVNKSHLQRNLLPLAPFVT*ALQGTD
Trigger: GTCTGTGCCCTGTAGTGCTCAGGTGACAAAGGGAGC...TAGAGGGAGCAGGTTTCTTTGTAGGTGGCTTTTGTTTACATCCTTAGAGCACAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCTCTCCACCCCAGCTGTaGTCTGCTATATGTGAAGAC +
Preference number: 2 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSSPPQL*SAICED
Trigger: GTCTTCACATATAGCAGAGCACAGCTGGGGTGGAGA...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GGATTACAGGCACGAGGCACAATGCTCAGGTGTCTAATTTTTGTGGTTTTTGAGTCTTCCCTGCACTTCTaGCCTCCTCTCGCTGTGTAC +
Preference number: 2 (lower is better)
Translates to: GLQARGTMLRCLIFVVFESSLHF*PPLAVY
Trigger: GTACACAGCGAGAGGAGGGCAGAAGTGCAGGGAAGA...CTCAAAAACCACAAAAATTAGACACCTGAGCATTGTGCCTCGTGCCTGTAATCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCCCAAGGCAGAAAGATTaGCCTGAGTCTGAGGCAAGT +
Preference number: 2 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSPRQKD*PESEAS
Trigger: ACTTGCCTCAGACTCAGGGCAATCTTTCTGCCTTGG...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGAATATTAAAGGTGTGTaGCCCACGCCTGGCTCTGAG +
Preference number: 2 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWNIKGV*PTPGSE
Trigger: CTCAGAGCCAGGCGTGGGGCACACACCTTTAATATT...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAATATTAAAGGTGTGTaGCCCACGCCTGGCTCTGAG +
Preference number: 2 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSNIKGV*PTPGSE
Trigger: CTCAGAGCCAGGCGTGGGGCACACACCTTTAATATT...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAAAGGGGAGGTCAGCAATaGGCCTGGGGTGGCTCCTTG +
Preference number: 2 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKRGGQQ*AWGGSL
Trigger: CAAGGAGCCACCCCAGGCCCATTGCTGACCTCCCCT...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCTCCCTCGCCCAGTTCTaGGACTGTAGACATGTACTA +
Preference number: 2 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSSLAQF*DCRHVL
Trigger: TAGTACATGTCTACAGTCCCAGAACTGGGCGAGGGA...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp GTGGTTTTTGAGACAGGTTCACACAATGTAGTTCAGGCTGGCCTTGCACTCATGCACCAGTGTCCCACATaGCACAGAAAATTTGGCCAA +
Preference number: 2 (lower is better)
Translates to: VVFETGSHNVVQAGLALMHQCPT*HRKFGQ
Trigger: TTGGCCAAATTTTCTGTGTCATGTGGGACACTGGTG...CATGAGTGCAAGGCCAGCCTGAACTACATTGTGTGAACCTGTCTCAAAAACCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGCACCAGTGTCCCACATaGCACAGAAAATTTGGCCAA +
Preference number: 2 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWHQCPT*HRKFGQ
Trigger: TTGGCCAAATTTTCTGTGTCATGTGGGACACTGGTG...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGTCCTCCTATAGCTCTTaGCTGCTAACAGGCATGAGT +
Preference number: 2 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWSSYSS*LLTGMS
Trigger: ACTCATGCCTGTTAGCAGTCAAGAGCTATAGGAGGA...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAGCAGGCCTCAAACTTaGGAAATTGCCAAGGATGAC +
Preference number: 2 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSSRPQT*EIAKDD
Trigger: GTCATCCTTGGCAATTTCTCAAGTTTGAGGCCTGCT...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp TTTTCTAACTCAGAGACCTCATGCTCAAAAGTGACTTGGAACAATGAAACTTGGGGACCTGCTTGCCTCTaGTCCCCAAGTGCAGGGATG +
Preference number: 2 (lower is better)
Translates to: FSNSETSCSKVTWNNETWGPACL*SPSAGM
Trigger: CATCCCTGCACTTGGGGAGCAGAGGCAAGCAGGTCC...CCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTTAGAAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGGTCAGTCTGCCACACTaGTTTGTGTTTGACAGAGTG +
Preference number: 2 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWVSLPH*FVFDRV
Trigger: CACTCTGTCAAACACAAAGCAGTGTGGCAGACTGAC...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GGATTACAGGCACGAGGCACAATGCTCAGGTGTCTAATTTTTGTGGTTTTTGAGCCAGCCTGGTCAGTCTaGCACACTGCTTTGTGTTTG +
Preference number: 2 (lower is better)
Translates to: GLQARGTMLRCLIFVVFEPAWSV*HTALCL
Trigger: CAAACACAAAGCAGTGTGGCAGACTGACCAGGCTGG...CTCAAAAACCACAAAAATTAGACACCTGAGCATTGTGCCTCGTGCCTGTAATCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTACGCCGTCTGACCTCTTaGCTCCCTCGCCCAGTTCTG +
Preference number: 2 (lower is better)
Translates to: EDREDHNFLLLTSLITCVRRLTS*LPRPVL
Trigger: CAGAACTGGGCGAGGGAGGCAAGAGGTCAGACGGCG...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTAGCCTGGCCTTCTCCCTaGTGGAGGCCCAGCTCTGAA +
Preference number: 2 (lower is better)
Translates to: EDREDHNFLLLTSLITCVAWPSP*WRPSSE
Trigger: TTCAGAGCTGGGCCTCCAGCAGGGAGAAGGCCAGGC...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGCAGCCATGTGGTCTCTaGTCTGACCTTGCAATAATG +
Preference number: 2 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWQPCGL*SDLAIM
Trigger: CATTATTGCAAGGTCAGAGCAGAGACCACATGGCTG...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTAGCAATGGGCCTGGGGTaGCTCCTTGCTGTGGCAGTG +
Preference number: 2 (lower is better)
Translates to: EDREDHNFLLLTSLITCVAMGLG*LLAVAV
Trigger: CACTGCCACAGCAAGGAGCCACCCCAGGCCCATTGC...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp AGAGTTGTGGGGGAGGAGACTTTGAGCAGCAGGACGAAGAAAGGAAGATGTCTGAATCTGAGATTGCCCTaGGCTACTTTAGATACTGTC +
Preference number: 2 (lower is better)
Translates to: RVVGEETLSSRTKKGRCLNLRLP*ATLDTV
Trigger: GACAGTATCTAAAGTAGCCCAGGGCAATCTCAGATT...CAGACATCTTCCTTTCTTCGTCCTGCTGCTCAAAGTCTCCTCCCCCACAACTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
3UTR-3UTR TCA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAATGCCAGAAAAGGGCATaGTCCCTGGGAGCTGGATGG +
Preference number: 2 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKCQKRA*SLGAGW
Trigger: CCATCCAGCTCCCAGGGATCATGCCCTTTTCTGGCA...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGTGTGCTGTCTATATGTaGGTGTGGTGTACATGCATG +
Preference number: 2 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWCAVYM*VWCTCM
Trigger: CATGCATGTACACCACACTCACATATAGACAGCACA...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAGTTCTCTCTCAACATaGGATTCTGAGCTGGGAATG +
Preference number: 2 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSSSLST*DSELGM
Trigger: CATTCCCAGCTCAGAATCTCATGTTGAGAGAGAACT...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCCTGCAAGCTACTCTCTaGAACATCAGGACAGAAAGT +
Preference number: 2 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSLQATL*NIRTES
Trigger: ACTTTCTGTCCTGATGTTTCAGAGAGTAGCTTGCAG...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTAGGACCTGCTTGCCTCTaGTCCCCAAGTGCAGGGATG +
Preference number: 2 (lower is better)
Translates to: EDREDHNFLLLTSLITCVGPACL*SPSAGM
Trigger: CATCCCTGCACTTGGGGAGCAGAGGCAAGCAGGTCC...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGAGATCCACCTGTCTCTaGCTCCTGAGTGCAATATTA +
Preference number: 2 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWRSTCL*LLSAIL
Trigger: TAATATTGCACTCAGGAGGCAGAGACAGGTGGATCT...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp TTTTCTAACTCAGAGACCTCATGCTCAAAAGTGACTTGGAACAATGAAACTTGGTCTGGAAGCACAGCCTaGAGGGTGCTGCTCTGCACA +
Preference number: 2 (lower is better)
Translates to: FSNSETSCSKVTWNNETWSGSTA*RVLLCT
Trigger: TGTGCAGAGCAGCACCCTCCAGGCTGTGCTTCCAGA...CCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTTAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp TCTTTTTGCCTATCCATTGAGCCATTTCTCCAGCCGCATCTTTTGTTTCTAAGAGTCTCACCTCCCAAGTaGTGGGATTATAGGCTGTGC +
Preference number: 2 (lower is better)
Translates to: SFCLSIEPFLQPHLLFLRVSPPK*WDYRLC
Trigger: GCACAGCCTATAATCCCAGCACTTGGGAGGTGAGAC...TCTTAGAAACAAAAGATGCGGCTGGAGAAATGGCTCAATGGATAGGCAAAAAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGTTGTGTTTGACAGAGTaGTCAGTGCTACAGAAAGCA +
Preference number: 2 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWLCLTE*SVLQKA
Trigger: TGCTTTCTGTAGCACTGAGCACTCTGTCAAACACAA...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GTGGTTTTTGAGACAGGTTCACACAATGTAGTTCAGGCTGGCCTTGCACTCATGTTGTGTTTGACAGAGTaGTCAGTGCTACAGAAAGCA +
Preference number: 2 (lower is better)
Translates to: VVFETGSHNVVQAGLALMLCLTE*SVLQKA
Trigger: TGCTTTCTGTAGCACTGAGCACTCTGTCAAACACAA...CATGAGTGCAAGGCCAGCCTGAACTACATTGTGTGAACCTGTCTCAAAAACCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGCAGAACCATGTTAACTaGCAAGCTCTTTCCAGGTTA +
Preference number: 2 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWQNHVN*QALSRL
Trigger: TAACCTGGAAAGAGCTTGGCAGTTAACATGGTTCTG...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTACACGCCTCCTCCCTGTaGTCCCACAACACTCTCTAC +
Preference number: 2 (lower is better)
Translates to: EDREDHNFLLLTSLITCVHASSL*SHNTLY
Trigger: GTAGAGAGTGTTGTGGGAGCACAGGGAGGAGGCGTG...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAACTCAGAGACCTCATaGTCAAAAGTGACTTGGAAC +
Preference number: 2 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSNSETS*SKVTWN
Trigger: GTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTT...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp GTCCTCCATTACTTTCTGCCTGTTCACTTGAGACAGCGTCTCTCCCTGAACCTGATTCAAAAGTGTACTTaGCACCTGTACAATAAGGCA +
Preference number: 2 (lower is better)
Translates to: VLHYFLPVHLRQRLSLNLIQKCT*HLYNKA
Trigger: TGCCTTATTGTACAGGTGCCAAGTACACTTTTGAAT...CAGGTTCAGGGAGAGACGCTGTCTCAAGTGAACAGGCAGAAAGTAATGGAGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp GACAGAGTGCTCAGTGCTACAGAAAGCACCAGTGTCCCACATGACACAGAAAATAAAGAATATGATGAGTaGGCACAAGTTGTAGCCGTT +
Preference number: 2 (lower is better)
Translates to: DRVLSATESTSVPHDTENKEYDE*AQVVAV
Trigger: AACGGCTACAACTTGTGCTCACTCATCATATTCTTT...ATTTTCTGTGTCATGTGGGACACTGGTGCTTTCTGTAGCACTGAGCACTCTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp TTTTCTAACTCAGAGACCTCATGCTCAAAAGTGACTTGGAACAATGAAACTTGGCCCCTAAAGTGGCTCTaGGTTTTCCAGCTGCACACA +
Preference number: 2 (lower is better)
Translates to: FSNSETSCSKVTWNNETWPLKWL*VFQLHT
Trigger: TGTGTGCAGCTGGAAAACTCAGAGCCACTTTAGGGG...CCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTTAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTACCTGTTGCAGCTTCCTaGGTGCTGACATCACAGGTG +
Preference number: 2 (lower is better)
Translates to: EDREDHNFLLLTSLITCVPVAAS*VLTSQV
Trigger: CACCTGTGATGTCAGCACTCAGGAAGCTGCAACAGG...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp TTTTCTAACTCAGAGACCTCATGCTCAAAAGTGACTTGGAACAATGAAACTTGGGTGCTCTGCTATATGTaGAGACAGGGTCCCACTGTG +
Preference number: 2 (lower is better)
Translates to: FSNSETSCSKVTWNNETWVLCYM*RQGPTV
Trigger: CACAGTGGGACCCTGTCTTCACATATAGCAGAGCAC...CCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTTAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTAAAAGGCAGCCAGCCATaGTGGTGGCTCACTTTGGTC +
Preference number: 2 (lower is better)
Translates to: EDREDHNFLLLTSLITCVKGSQP*WWLTLV
Trigger: GACCAAAGTGAGCCACCATCATGGCTGGCTGCCTTT...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAACATCAGGACAGAAAGTaGCCAGAGTTCACCACGTGC +
Preference number: 2 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKHQDRK*PEFTTC
Trigger: GCACGTGGTGAACTCTGGTCACTTTCTGTCCTGATG...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp TCTTTTTGCCTATCCATTGAGCCATTTCTCCAGCCGCATCTTTTGTTTCTAAGATCTCCACCCCAGCTGTaGTCTGCTATATGTGAAGAC +
Preference number: 2 (lower is better)
Translates to: SFCLSIEPFLQPHLLFLRSPPQL*SAICED
Trigger: GTCTTCACATATAGCAGAGCACAGCTGGGGTGGAGA...TCTTAGAAACAAAAGATGCGGCTGGAGAAATGGCTCAATGGATAGGCAAAAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAAATGAGAGCCCGTCACTaGTCCATCTGGTCATTTCCG +
Preference number: 2 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKMRARH*SIWSFP
Trigger: CGGAAATGACCAGATGGAGCAGTGACGGGCTCTCAT...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGTGCTCAAAAGTGACTTaGAACAATGAAACTTGGTCC +
Preference number: 2 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWCSKVT*NNETWS
Trigger: GGACCAAGTTTCATTGTTCCAAGTCACTTTTGAGCA...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp CCTGTAACTCACAATGGAGTTCAAGCTGGCTTTAAACTCGTAATCTTTCTGTTTAGCAACGATATGAGCTaGGAGATTTGGTCCTGGTCC +
Preference number: 2 (lower is better)
Translates to: PVTHNGVQAGFKLVIFLFSNDMS*EIWSWS
Trigger: GGACCAGGACCAAATCTCTCAGCTCATATCGTTGCT...AAACAGAAAGATTACGAGTTTAAAGCCAGCTTGAACTCCATTGTGAGTTACAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp TTTTCTAACTCAGAGACCTCATGCTCAAAAGTGACTTGGAACAATGAAACTTGGTCTGAGTTTTCCAGCTaGACACACAGCCTTCCTAGG +
Preference number: 2 (lower is better)
Translates to: FSNSETSCSKVTWNNETWSEFSS*THSLPR
Trigger: CCTAGGAAGGCTGTGTGTGCAGCTGGAAAACTCAGA...CCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTTAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCGAGGCTTCCTACAACTaGATCAATCTCATAAATCTA +
Preference number: 2 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSEASYN*INLINL
Trigger: TAGATTTATGAGATTGATGCAGTTGTAGGAAGCCTC...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp TTTTCTAACTCAGAGACCTCATGCTCAAAAGTGACTTGGAACAATGAAACTTGGTCTCCACCCCAGCTGTaGTCTGCTATATGTGAAGAC +
Preference number: 2 (lower is better)
Translates to: FSNSETSCSKVTWNNETWSPPQL*SAICED
Trigger: GTCTTCACATATAGCAGAGCACAGCTGGGGTGGAGA...CCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTTAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTAAAATCTGCCTGCCTCTaGCTCCCAAGTGCTGGGATT +
Preference number: 2 (lower is better)
Translates to: EDREDHNFLLLTSLITCVKSACL*LPSAGI
Trigger: AATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTT...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCTGGTGTAAATTCATCTaGTCAAGTAGAGAACTGCAA +
Preference number: 2 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSWCKFI*SSRELQ
Trigger: TTGCAGTTCTCTACTTGAGCAGATGAATTTACACCA...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTAGAAGGGAGGACTAGATaGACAGATCCCATCCCCACA +
Preference number: 2 (lower is better)
Translates to: EDREDHNFLLLTSLITCVEGRTR*TDPIPT
Trigger: TGTGGGGATGGGATCTGTCCATCTAGTCCTCCCTTC...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAACACTTGGAGGGTCACTaGACCCTCTTTTTGCCTATC +
Preference number: 2 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKHLEGH*TLFLPI
Trigger: GATAGGCAAAAAGAGGGTCCAGTGACCCTCCAAGTG...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCGATAGTCACAAGAAATaGAGCACAAACTCCAAAAAG +
Preference number: 2 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSDSHKK*STNSKK
Trigger: CTTTTTGGAGTTTGTGCTCCATTTCTTGTGACTATC...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp GGATTACAGGCACGAGGCACAATGCTCAGGTGTCTAATTTTTGTGGTTTTTGAGAAAGAATATGATGAGTaGGCACAAGTTGTAGCCGTT +
Preference number: 2 (lower is better)
Translates to: GLQARGTMLRCLIFVVFEKEYDE*AQVVAV
Trigger: AACGGCTACAACTTGTGCTCACTCATCATATTCTTT...CTCAAAAACCACAAAAATTAGACACCTGAGCATTGTGCCTCGTGCCTGTAATCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp TTTTCTAACTCAGAGACCTCATGCTCAAAAGTGACTTGGAACAATGAAACTTGGCACCAGTGTCCCACATaGCACAGAAAATTTGGCCAA +
Preference number: 2 (lower is better)
Translates to: FSNSETSCSKVTWNNETWHQCPT*HRKFGQ
Trigger: TTGGCCAAATTTTCTGTGTCATGTGGGACACTGGTG...CCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTTAGAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAATCCTCCTATAGCTCTTaGCTGCTAACAGGCATGAGT +
Preference number: 2 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKSSYSS*LLTGMS
Trigger: ACTCATGCCTGTTAGCAGTCAAGAGCTATAGGAGGA...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTACTCAACATGAGATTCTaGGCTGGGAATGCAGAGCCT +
Preference number: 2 (lower is better)
Translates to: EDREDHNFLLLTSLITCVLNMRF*AGNAEP
Trigger: AGGCTCTGCATTCCCAGCTCAGAATCTCATGTTGAG...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GACAGAGTGCTCAGTGCTACAGAAAGCACCAGTGTCCCACATGACACAGAAAATTTTGTATGCAGTACCTaGAGTCTATACTTTCTTCTT +
Preference number: 2 (lower is better)
Translates to: DRVLSATESTSVPHDTENFVCST*SLYFLL
Trigger: AAGAAGAAAGTATAGACTGCAGGTACTGCATACAAA...ATTTTCTGTGTCATGTGGGACACTGGTGCTTTCTGTAGCACTGAGCACTCTGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GTGGTTTTTGAGACAGGTTCACACAATGTAGTTCAGGCTGGCCTTGCACTCATGCTCTTTACAACTGTATaGTATCCTTTACTTTTCCTC +
Preference number: 2 (lower is better)
Translates to: VVFETGSHNVVQAGLALMLFTTV*YPLLFL
Trigger: GAGGAAAAGTAAAGGATAGCATACAGTTGTAAAGAG...CATGAGTGCAAGGCCAGCCTGAACTACATTGTGTGAACCTGTCTCAAAAACCAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp TCTTTTTGCCTATCCATTGAGCCATTTCTCCAGCCGCATCTTTTGTTTCTAAGACAATCCCTCTCTGAGTaGTTATTCCTCTCCCACTTT +
Preference number: 2 (lower is better)
Translates to: SFCLSIEPFLQPHLLFLRQSLSE*LFLSHF
Trigger: AAAGTGGGAGAGGAATAAGCACTCAGAGAGGGATTG...TCTTAGAAACAAAAGATGCGGCTGGAGAAATGGCTCAATGGATAGGCAAAAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAACAGCCATGTGGTCTCTaGTCTGACCTTGCAATAATG +
Preference number: 2 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKQPCGL*SDLAIM
Trigger: CATTATTGCAAGGTCAGAGCAGAGACCACATGGCTG...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAACCAGAGTTCACCACGTaGCTCAGTTCTTACAGCATT +
Preference number: 2 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKPEFTT*LSSYSI
Trigger: AATGCTGTAAGAACTGAGGCACGTGGTGAACTCTGG...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTAAGCAGGCCTCAAACTTaGGAAATTGCCAAGGATGAC +
Preference number: 2 (lower is better)
Translates to: EDREDHNFLLLTSLITCVSRPQT*EIAKDD
Trigger: GTCATCCTTGGCAATTTCTCAAGTTTGAGGCCTGCT...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAACAAATAACTTCCTGTTaGAGCTTCCTGAGTGCTGAC +
Preference number: 2 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKQITSC*SFLSAD
Trigger: GTCAGCACTCAGGAAGCTGCAACAGGAAGTTATTTG...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp TCTTTTTGCCTATCCATTGAGCCATTTCTCCAGCCGCATCTTTTGTTTCTAAGACAGAACCATGTTAACTaGCAAGCTCTTTCCAGGTTA +
Preference number: 2 (lower is better)
Translates to: SFCLSIEPFLQPHLLFLRQNHVN*QALSRL
Trigger: TAACCTGGAAAGAGCTTGGCAGTTAACATGGTTCTG...TCTTAGAAACAAAAGATGCGGCTGGAGAAATGGCTCAATGGATAGGCAAAAAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CAA 90 bp GGTTTGTTAGAGTGGGTGCTAAGATCTGAATTTGGACCTTCAAATTaGTATATAGCAACAAGACAGCTGATCATTGTGCCTCATGCTGTA +
Preference number: 2 (lower is better)
Translates to: GLLEWVLRSEFGPSN*YIATRQLIIVPHAV
Trigger: TACAGCATGAGGCACAATGATCAGCTGTCTTGTTGCTATATACAAATTTGAAGGTCCAAATTCAGATCTTAGCACCCACTCTAACAAACC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR TCA 90 bp ATGTGCTCTAAGGATGTAAACAAAAGCCACCTACAAAGAAACCTGCTCCCTCTATGCATGTTTTCTTCATaGTCACTAATCAGGAAACCT +
Preference number: 2 (lower is better)
Translates to: MCSKDVNKSHLQRNLLPLCMFSS*SLIRKP
Trigger: AGGTTTCCTGATTAGTGATCATGAAGAAAACATGCA...TAGAGGGAGCAGGTTTCTTTGTAGGTGGCTTTTGTTTACATCCTTAGAGCACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp ATGTGCTCTAAGGATGTAAACAAAAGCCACCTACAAAGAAACCTGCTCCCTCTAGAGGCTTCCTACAACTaGATCAATCTCATAAATCTA +
Preference number: 2 (lower is better)
Translates to: MCSKDVNKSHLQRNLLPLEASYN*INLINL
Trigger: TAGATTTATGAGATTGATGCAGTTGTAGGAAGCCTC...TAGAGGGAGCAGGTTTCTTTGTAGGTGGCTTTTGTTTACATCCTTAGAGCACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAAAACTCAGAGACCTCATaGTCAAAAGTGACTTGGAAC +
Preference number: 2 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKNSETS*SKVTWN
Trigger: GTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTT...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTATTGTGTTTGACAGAGTaGTCAGTGCTACAGAAAGCA +
Preference number: 2 (lower is better)
Translates to: EDREDHNFLLLTSLITCVLCLTE*SVLQKA
Trigger: TGCTTTCTGTAGCACTGAGCACTCTGTCAAACACAA...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAAAATTCACATCCTTCTTaGTTTTGGTCTCCTGGTAAG +
Preference number: 2 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKNSHPS*FWSPGK
Trigger: CTTACCAGGAGACCAAAAGCAAGAAGGATGTGAATT...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp CCTGTAACTCACAATGGAGTTCAAGCTGGCTTTAAACTCGTAATCTTTCTGTTTGAGGCTTCCTACAACTaGATCAATCTCATAAATCTA +
Preference number: 2 (lower is better)
Translates to: PVTHNGVQAGFKLVIFLFEASYN*INLINL
Trigger: TAGATTTATGAGATTGATGCAGTTGTAGGAAGCCTC...AAACAGAAAGATTACGAGTTTAAAGCCAGCTTGAACTCCATTGTGAGTTACAGG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTACTGACAAGGAGCCTTTaGATTTATTTTCTTGCTTCC +
Preference number: 2 (lower is better)
Translates to: EDREDHNFLLLTSLITCVLTRSL*IYFLAS
Trigger: GGAAGCAAGAAAATAAATGCAAAGGCTCCTTGTCAG...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CCA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAACATGGTTTGTTAGAGTaGGTGCTAAGATCTGAATTT +
Preference number: 2 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKHGLLE*VLRSEF
Trigger: AAATTCAGATCTTAGCACCCACTCTAACAAACCATG...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp TTTTCTAACTCAGAGACCTCATGCTCAAAAGTGACTTGGAACAATGAAACTTGGTTTGTATGCAGTACCTaGAGTCTATACTTTCTTCTT +
Preference number: 2 (lower is better)
Translates to: FSNSETSCSKVTWNNETWFVCST*SLYFLL
Trigger: AAGAAGAAAGTATAGACTGCAGGTACTGCATACAAA...CCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTTAGAAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp CCTGTAACTCACAATGGAGTTCAAGCTGGCTTTAAACTCGTAATCTTTCTGTTTTTTGTATGCAGTACCTaGAGTCTATACTTTCTTCTT +
Preference number: 2 (lower is better)
Translates to: PVTHNGVQAGFKLVIFLFFVCST*SLYFLL
Trigger: AAGAAGAAAGTATAGACTGCAGGTACTGCATACAAA...AAACAGAAAGATTACGAGTTTAAAGCCAGCTTGAACTCCATTGTGAGTTACAGG
37% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAACTCTTTACAACTGTATaGTATCCTTTACTTTTCCTC +
Preference number: 2 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKLFTTV*YPLLFL
Trigger: GAGGAAAAGTAAAGGATAGCATACAGTTGTAAAGAG...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTAACAAATACACTAATGTaGACGCAGCAAAGGGATATA +
Preference number: 2 (lower is better)
Translates to: EDREDHNFLLLTSLITCVTNTLM*TQQRDI
Trigger: TATATCCCTTTGCTGCGTGCACATTAGTGTATTTGT...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR GCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTACTCTTTACAACTGTATaGTATCCTTTACTTTTCCTC +
Preference number: 2 (lower is better)
Translates to: EDREDHNFLLLTSLITCVLFTTV*YPLLFL
Trigger: GAGGAAAAGTAAAGGATAGCATACAGTTGTAAAGAG...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp AGAGGGGAGGTCAGCAATGGGCCTGGGGTGGCTCCTTaGTGTGGCAGTGATACCTGCTCCCTTTGTCACCTG +
Preference number: 3 (lower is better)
Translates to: RGEVSNGPGVAP*CGSDTCSLCHL
Trigger: CAGGTGACAAAGGGAGCAGGTATCACTGCCACAGCAAGGAGCCACCCCAGGCCCATTGCTGACCTCCCCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp CCTACCCAGCCAGGGTCTCACTGTACAGCCCTAGGCTaGCTGGAACTCAGAGATCCACCTGTCTCTGCCTCC +
Preference number: 3 (lower is better)
Translates to: PTQPGSHCTALG*LELRDPPVSAS
Trigger: GGAGGCAGAGACAGGTGGATCTCTGAGTTCCAGGCAGCCTAGGGCTGTACAGTGAGACCCTGGCTGGGTAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 72 bp AAGGACCTGCTTGCCTCTGCTCCCCAAGTGCAGGGATaGGAGCCCGTCACTGCTCCATCTGGTCATTTCCGG +
Preference number: 3 (lower is better)
Translates to: KDLLASAPQVQG*EPVTAPSGHFR
Trigger: CCGGAAATGACCAGATGGAGCAGTGACGGGCTCTCATCCCTGCACTTGGGGAGCAGAGGCAAGCAGGTCCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 72 bp CAGCAATGGGCCTGGGGTGGCTCCTTGCTGTGGCAGTaGTACCTGCTCCCTTTGTCACCTGAGCACTACAGG +
Preference number: 3 (lower is better)
Translates to: QQWAWGGSLLWQ*YLLPLSPEHYR
Trigger: CCTGTAGTGCTCAGGTGACAAAGGGAGCAGGTATCACTGCCACAGCAAGGAGCCACCCCAGGCCCATTGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp AGAATCCCAAGGACCTGCTTGCCTCTGCTCCCCAAGTaGAGGGATGAGAGCCCGTCACTGCTCCATCTGGTC +
Preference number: 3 (lower is better)
Translates to: RIPRTCLPLLPK*RDESPSLLHLV
Trigger: GACCAGATGGAGCAGTGACGGGCTCTCATCCCTGCACTTGGGGAGCAGAGGCAAGCAGGTCCTTGGGATTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CAA 90 bp ACTAAATCAACAGGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACTGCTTTATCCCAAGGACCTGCTaGCCTCTGCTCCCCAAGTGC +
Preference number: 3 (lower is better)
Translates to: TKSTGANLPSLVSLPHCFIPRTC*PLLPKC
Trigger: GCACTTGGGGAGCAGAGGCAAGCAGGTCCTTGGGAT...AAAGCAGTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTTAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp GCAGACGGATCCTCAACCTCACACGCCTCCTCCCTGTaGTCCCACAACACTCTCTACACACTAGATCATCCC +
Preference number: 3 (lower is better)
Translates to: ADGSSTSHASSL*SHNTLYTLDHP
Trigger: GGGATGATCTAGTGTGTAGAGAGTGTTGTGGGAGCACAGGGAGGAGGCGTGTGAGGTTGAGGATCCGTCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 72 bp CTTGCTGTGGCAGTGATACCTGCTCCCTTTGTCACCTaGGCACTACAGGGCACAGACTCCATGGCCACACTA +
Preference number: 3 (lower is better)
Translates to: LAVAVIPAPFVT*ALQGTDSMATL
Trigger: TAGTGTGGCCATGGAGTCTGTGCCCTGTAGTGCTCAGGTGACAAAGGGAGCAGGTATCACTGCCACAGCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp GGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACTaGTTTGTGTTTGACAGAGTGCTCAGTGCTACAGAA +
Preference number: 3 (lower is better)
Translates to: GANLPSLVSLPH*FVFDRVLSATE
Trigger: TTCTGTAGCACTGAGCACTCTGTCAAACACAAAGCAGTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp TCTCCCTGCTGGAGGCCCAGCTCTGAACACTTCCTCTaGTACGTGATTCCCACTAACCCAGCTCCACTAATC +
Preference number: 3 (lower is better)
Translates to: SPCWRPSSEHFL*YVIPTNPAPLI
Trigger: GATTAGTGGAGCTGGGTTAGTGGGAATCACGTAGCAGAGGAAGTGTTCAGAGCTGGGCCTCCAGCAGGGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 72 bp AGGGTCCCACTGTGTAGCCTTGCCTGGCCTGGAACTTaGTACGTAGACCACATGGCCTTGAACTCAACAGAG +
Preference number: 3 (lower is better)
Translates to: RVPLCSLAWPGT*YVDHMALNSTE
Trigger: CTCTGTTGAGTTCAAGGCCATGTGGTCTACGTACCAAGTTCCAGGCCAGGCAAGGCTACACAGTGGGACCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 72 bp GGTCTGAGTAATCCTGCTAGGCTGGAACTGACCCTGTaGGCCAGGCTAGTTAGAATCCCAAGGACCTGCTTG +
Preference number: 3 (lower is better)
Translates to: GLSNPARLELTL*ARLVRIPRTCL
Trigger: CAAGCAGGTCCTTGGGATTCTAACTAGCCTGGCCCACAGGGTCAGTTCCAGCCTAGCAGGATTACTCAGACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 72 bp CACTGTGAAAAGAATCCTGGGCTACCCACCCCTACATaGCCTTGGCAGAAGGACACATTGAGCAAGGCCAGG +
Preference number: 3 (lower is better)
Translates to: HCEKNPGLPTPT*PWQKDTLSKAR
Trigger: CCTGGCCTTGCTCAATGTGTCCTTCTGCCAAGGCCATGTAGGGGTGGGTAGCCCAGGATTCTTTTCACAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CAA 90 bp ACTAAATCAACAGGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACTGCTTTGAACCCAGGGCTTCCTaGCAAGCTAAGCACCACGTT +
Preference number: 3 (lower is better)
Translates to: TKSTGANLPSLVSLPHCFEPRAS*QAKHHV
Trigger: AACGTGGTGCTTAGCTTGCAAGGAAGCCCTGGGTTC...AAAGCAGTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTTAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 72 bp TACCCACCCCTACATGGCCTTGGCAGAAGGACACATTaGGCAAGGCCAGGGAGCAGAGTTGCTACTGTAACA +
Preference number: 3 (lower is better)
Translates to: YPPLHGLGRRTH*ARPGSRVATVT
Trigger: TGTTACAGTAGCAACTCTGCTCCCTGGCCTTGCTCAATGTGTCCTTCTGCCAAGGCCATGTAGGGGTGGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp CTCTGCTCCCCAAGTGCAGGGATGAGAGCCCGTCACTaGTCCATCTGGTCATTTCCGGGTTTTTGCTGTTAT +
Preference number: 3 (lower is better)
Translates to: LCSPSAGMRARH*SIWSFPGFCCY
Trigger: ATAACAGCAAAAACCCGGAAATGACCAGATGGAGCAGTGACGGGCTCTCATCCCTGCACTTGGGGAGCAGAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp CCTAGGCTGCCTGGAACTCAGAGATCCACCTGTCTCTaGCTCCTGAGTGCAATATTAAAGGTGTGTGCCCCA +
Preference number: 3 (lower is better)
Translates to: PRLPGTQRSTCL*LLSAILKVCAP
Trigger: TGGGGCACACACCTTTAATATTGCACTCAGGAGGCAGAGACAGGTGGATCTCTGAGTTCCAGGCAGCCTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 72 bp TCAACAGAGATCTGCCTGTGTCTACTTCCCGAGTGCTaGAACTCAAGGCATGTGTCACCACATCTGGCCCTC +
Preference number: 3 (lower is better)
Translates to: STEICLCLLPEC*NSRHVSPHLAL
Trigger: GAGGGCCAGATGTGGTGACACATGCCTTGAGTTCCAGCACTCGGGAAGTAGACACAGGCAGATCTCTGTTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 72 bp GCCTTGCACTCATGTCAACCCTCCTCCTATAGCTCTTaGCTGCTAACAGGCATGAGTACCGTGCCCAGCTAT +
Preference number: 3 (lower is better)
Translates to: ALHSCQPSSYSS*LLTGMSTVPSY
Trigger: ATAGCTGGGCACGGTACTCATGCCTGTTAGCAGTCAAGAGCTATAGGAGGAGGGTTGACATGAGTGCAAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp AACTCAACAGAGATCTGCCTGTGTCTACTTCCCGAGTaGTGGAACTCAAGGCATGTGTCACCACATCTGGCC +
Preference number: 3 (lower is better)
Translates to: NSTEICLCLLPE*WNSRHVSPHLA
Trigger: GGCCAGATGTGGTGACACATGCCTTGAGTTCCAGCACTCGGGAAGTAGACACAGGCAGATCTCTGTTGAGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp CTAGCACCCCATTTCCTGGGTGTCTCAGAAGAGCGCTaGAAACAGAAGAATCCACAGCAGACGGATCCTCAA +
Preference number: 3 (lower is better)
Translates to: LAPHFLGVSEER*KQKNPQQTDPQ
Trigger: TTGAGGATCCGTCTGCTGTGGATTCTTCTGTTTGCAGCGCTCTTCTGAGACACCCAGGAAATGGGGTGCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp CTGCTCCAGAAAGGAAGGCGGCTGAGCAGCCTTTGGTaGAAACAGGAGATAAGCAAAAGCCCGTATATCCGA +
Preference number: 3 (lower is better)
Translates to: LLQKGRRLSSLW*KQEISKSPYIR
Trigger: TCGGATATACGGGCTTTTGCTTATCTCCTGTTTGCACCAAAGGCTGCTCAGCCGCCTTCCTTTCTGGAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
3UTR CCA 72 bp CTCACACTAAATCAACAGGGGCAAACCTCCCCAGCCTaGTCAGTCTGCCACACTGCTTTGTGTTTGACAGAG +
Preference number: 3 (lower is better)
Translates to: LTLNQQGQTSPA*SVCHTALCLTE
Trigger: CTCTGTCAAACACAAAGCAGTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTTAGTGTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 72 bp GGTATAAAGGCAGCCAGCCATGATGGTGGCTCACTTTaGTCCCTATCACTGTGCACTGACAAGGAGCCTTTG +
Preference number: 3 (lower is better)
Translates to: GIKAASHDGGSL*SLSLCTDKEPL
Trigger: CAAAGGCTCCTTGTCAGTGCACAGTGATAGGGACCAAAGTGAGCCACCATCATGGCTGGCTGCCTTTATACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 72 bp ACCAGAGTTCACCACGTGCCTCAGTTCTTACAGCATTaGAAGTGGCTGATGTTAGGGGATGTCCACCTTGGC +
Preference number: 3 (lower is better)
Translates to: TRVHHVPQFLQH*KWLMLGDVHLG
Trigger: GCCAAGGTGGACATCCCCTAACATCAGCCACTTCCAATGCTGTAAGAACTGAGGCACGTGGTGAACTCTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CAA 90 bp GTGGTTTTTGAGACAGGTTCACACAATGTAGTTCAGGCTGGCCTTGCACTCATGTCCCACTGTGTAGCCTaGCCTGGCCTGGAACTTGGT +
Preference number: 3 (lower is better)
Translates to: VVFETGSHNVVQAGLALMSHCVA*PGLELG
Trigger: ACCAAGTTCCAGGCCAGGCAAGGCTACACAGTGGGA...CATGAGTGCAAGGCCAGCCTGAACTACATTGTGTGAACCTGTCTCAAAAACCAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CAA 90 bp GACAGAGTGCTCAGTGCTACAGAAAGCACCAGTGTCCCACATGACACAGAAAATTCCCACTGTGTAGCCTaGCCTGGCCTGGAACTTGGT +
Preference number: 3 (lower is better)
Translates to: DRVLSATESTSVPHDTENSHCVA*PGLELG
Trigger: ACCAAGTTCCAGGCCAGGCAAGGCTACACAGTGGGA...ATTTTCTGTGTCATGTGGGACACTGGTGCTTTCTGTAGCACTGAGCACTCTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CAA 90 bp GTGGTTTTTGAGACAGGTTCACACAATGTAGTTCAGGCTGGCCTTGCACTCATGTTTGGTCCTGGTCCTTaGGTCCCTCAGATGCCCCTA +
Preference number: 3 (lower is better)
Translates to: VVFETGSHNVVQAGLALMFGPGP*VPQMPL
Trigger: TAGGGGCATCTGAGGGACCAAAGGACCAGGACCAAA...CATGAGTGCAAGGCCAGCCTGAACTACATTGTGTGAACCTGTCTCAAAAACCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CAA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGGAACCCAGGGCTTCCTaGCAAGCTAAGCACCACGTT +
Preference number: 3 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWEPRAS*QAKHHV
Trigger: AACGTGGTGCTTAGCTTGCAAGGAAGCCCTGGGTTC...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 72 bp GGGGTTTTCTTCAACAGGTATAAAGGCAGCCAGCCATaGTGGTGGCTCACTTTGGTCCCTATCACTGTGCAC +
Preference number: 3 (lower is better)
Translates to: GVFFNRYKGSQP*WWLTLVPITVH
Trigger: GTGCACAGTGATAGGGACCAAAGTGAGCCACCATCATGGCTGGCTGCCTTTATACCTGTTGAAGAAAACCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp TGGTCAGTCTGCCACACTGCTTTGTGTTTGACAGAGTaGTCAGTGCTACAGAAAGCACCAGTGTCCCACATG +
Preference number: 3 (lower is better)
Translates to: WSVCHTALCLTE*SVLQKAPVSHM
Trigger: CATGTGGGACACTGGTGCTTTCTGTAGCACTGAGCACTCTGTCAAACACAAAGCAGTGTGGCAGACTGACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp TACGTTACCCATCACCTACCCCAATCCCTCTCTGAGTaGTTATTCCTCTCCCACTTTGGTGTAAGCAGGCCT +
Preference number: 3 (lower is better)
Translates to: YVTHHLPQSLSE*LFLSHFGVSRP
Trigger: AGGCCTGCTTACACCAAAGTGGGAGAGGAATAAGCACTCAGAGAGGGATTGGGGTAGGTGATGGGTAACGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp GTAATCCCCACTTGGAGGGTCACTGGACCCTCTTTTTaGCTATCCATTGAGCCATTTCTCCAGCCGCATCTT +
Preference number: 3 (lower is better)
Translates to: VIPTWRVTGPSF*LSIEPFLQPHL
Trigger: AAGATGCGGCTGGAGAAATGGCTCAATGGATAGGCAAAAAGAGGGTCCAGTGACCCTCCAAGTGGGGATTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp ACAGTCCTAGCACTCAAGAGGCCAAGGCAGAAAGATTaGCCTGAGTCTGAGGCAAGTCTGAGCTACAGAGTA +
Preference number: 3 (lower is better)
Translates to: TVLALKRPRQKD*PESEASLSYRV
Trigger: TACTCTGTAGCTCAGACTTGCCTCAGACTCAGGGCAATCTTTCTGCCTTGGCCTCTTGAGTGCTAGGACTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp CTGTGCACTGACAAGGAGCCTTTGCATTTATTTTCTTaGTTCCCCACGAACATGGACCATCTCCTCGGGCCT +
Preference number: 3 (lower is better)
Translates to: LCTDKEPLHLFS*FPTNMDHLLGP
Trigger: AGGCCCGAGGAGATGGTCCATGTTCGTGGGGAAGCAAGAAAATAAATGCAAAGGCTCCTTGTCAGTGCACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp CAGGACGAAGAAAGGAAGATGTCTGGATTGTGGAGCTaGCTGAAAGCTGGGCAGCTCTCAGAACCAGAAAAG +
Preference number: 3 (lower is better)
Translates to: QDEERKMSGLWS*LKAGQLSEPEK
Trigger: CTTTTCTGGTTCTGAGAGCTGCCCAGCTTTCAGGCAGCTCCACAATCCAGACATCTTCCTTTCTTCGTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
3UTR-3UTR CAA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCTTTCTGCCTGTTCACTaGAGACAGCGTCTCTCCCTG +
Preference number: 3 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSFLPVH*RQRLSL
Trigger: CAGGGAGAGACGCTGTCTCAAGTGAACAGGCAGAAA...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 72 bp AAGCTGCCAGACAACTTGAAAAACAAGAGGACACTGTaGAAAGAATCCTGGGCTACCCACCCCTACATGGCC +
Preference number: 3 (lower is better)
Translates to: KLPDNLKNKRTL*KESWATHPYMA
Trigger: GGCCATGTAGGGGTGGGTAGCCCAGGATTCTTTTCACAGTGTCCTCTTGTTTTTCAAGTTGTCTGGCAGCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp CCTGAGTTTAAGTCTGCTGTCAACGGTTTTCTTCCCTaGACTTCTGCCCTCCTCTCGCTGTGTACATACAGT +
Preference number: 3 (lower is better)
Translates to: PEFKSAVNGFLP*TSALLSLCTYS
Trigger: ACTGTATGTACACAGCGAGAGGAGGGCAGAAGTGCAGGGAAGAAAACCGTTGACAGCAGACTTAAACTCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp GTGGTCCATGTTGCCCTAGAGTACATCTCACTGTATTaGCTAGAAGTCTCATCTGAGACCCCCAGTGATCCT +
Preference number: 3 (lower is better)
Translates to: VVHVALEYISLY*LEVSSETPSDP
Trigger: AGGATCACTGGGGGTCTCAGATGAGACTTCTAGGCAATACAGTGAGATGTACTCTAGGGCAACATGGACCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp GTATATAGCAACAAGACAGCTGATCATTGTGCCTCATaGTGTAATCCCCACTTGGAGGGTCACTGGACCCTC +
Preference number: 3 (lower is better)
Translates to: VYSNKTADHCAS*CNPHLEGHWTL
Trigger: GAGGGTCCAGTGACCCTCCAAGTGGGGATTACAGCATGAGGCACAATGATCAGCTGTCTTGTTGCTATATAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 72 bp CAGCTGATCATTGTGCCTCATGCTGTAATCCCCACTTaGAGGGTCACTGGACCCTCTTTTTGCCTATCCATT +
Preference number: 3 (lower is better)
Translates to: QLIIVPHAVIPT*RVTGPSFCLSI
Trigger: AATGGATAGGCAAAAAGAGGGTCCAGTGACCCTCCAAGTGGGGATTACAGCATGAGGCACAATGATCAGCTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 72 bp GTTCACCACGTGCCTCAGTTCTTACAGCATTGGAAGTaGCTGATGTTAGGGGATGTCCACCTTGGCATTCTT +
Preference number: 3 (lower is better)
Translates to: VHHVPQFLQHWK*LMLGDVHLGIL
Trigger: AAGAATGCCAAGGTGGACATCCCCTAACATCAGCCACTTCCAATGCTGTAAGAACTGAGGCACGTGGTGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CAA 90 bp GGATTACAGGCACGAGGCACAATGCTCAGGTGTCTAATTTTTGTGGTTTTTGAGGAACCCAGGGCTTCCTaGCAAGCTAAGCACCACGTT +
Preference number: 3 (lower is better)
Translates to: GLQARGTMLRCLIFVVFEEPRAS*QAKHHV
Trigger: AACGTGGTGCTTAGCTTGCAAGGAAGCCCTGGGTTC...CTCAAAAACCACAAAAATTAGACACCTGAGCATTGTGCCTCGTGCCTGTAATCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CAA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCTTTCTCTGTGTAGCCTaGGCTGTCCTGGAACTCACT +
Preference number: 3 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSFLCVA*AVLELT
Trigger: AGTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAA...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 72 bp ATTCTACGTTACCCATCACCTACCCCAATCCCTCTCTaGGTGCTTATTCCTCTCCCACTTTGGTGTAAGCAG +
Preference number: 3 (lower is better)
Translates to: ILRYPSPTPIPL*VLIPLPLWCKQ
Trigger: CTGCTTACACCAAAGTGGGAGAGGAATAAGCACTCAGAGAGGGATTGGGGTAGGTGATGGGTAACGTAGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 72 bp ACGAAGAAAGGAAGATGTCTGGATTGTGGAGCTGCCTaGAAGCTGGGCAGCTCTCAGAACCAGAAAAGATCT +
Preference number: 3 (lower is better)
Translates to: TKKGRCLDCGAA*KLGSSQNQKRS
Trigger: AGATCTTTTCTGGTTCTGAGAGCTGCCCAGCTTTCAGGCAGCTCCACAATCCAGACATCTTCCTTTCTTCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
3UTR GCA 72 bp ATGTGCACGCAGCAAAGGGATATAAAAACTGTCTGTTaGCAGGTGCCTTTAATTCCAGCACTTGGGAGGTGG +
Preference number: 3 (lower is better)
Translates to: MCTQQRDIKTVC*QVPLIPALGRW
Trigger: CCACCTCCCAAGTGCTGGAATTAAAGGCACCTGGCAACAGACAGTTTTTATATCCCTTTGCTGCGTGCACAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 72 bp TGGATATACACACATGCCAGAAAAGGGCATGATCCCTaGGAGCTGGATGGACATGTAATTGTGAGCAGCTTG +
Preference number: 3 (lower is better)
Translates to: WIYTHARKGHDP*ELDGHVIVSSL
Trigger: CAAGCTGCTCACAATTACATGTCCATCCAGCTCCCAGGGATCATGCCCTTTTCTGGCATGTGTGTATATCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 72 bp CCAAGTGCAGGGATGAGAGCCCGTCACTGCTCCATCTaGTCATTTCCGGGTTTTTGCTGTTATTTTGAGAAA +
Preference number: 3 (lower is better)
Translates to: PSAGMRARHCSI*SFPGFCCYFEK
Trigger: TTTCTCAAAATAACAGCAAAAACCCGGAAATGACCAGATGGAGCAGTGACGGGCTCTCATCCCTGCACTTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CAA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCCTCAAACTTGAGAAATaGCCAAGGATGACTCTCGCC +
Preference number: 3 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSLKLEK*PRMTLA
Trigger: GGCGAGAGTCATCCTTGGCAATTTCTCAAGTTTGAG...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CAA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAATCCCACTGTGTAGCCTaGCCTGGCCTGGAACTTGGT +
Preference number: 3 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKSHCVA*PGLELG
Trigger: ACCAAGTTCCAGGCCAGGCAAGGCTACACAGTGGGA...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CAA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCCTCCAGCCGCATCTTTaGTTTCTAAGATACTGCCTT +
Preference number: 3 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSLQPHL*FLRYCL
Trigger: AAGGCAGTATCTTAGAAACAAAAGATGCGGCTGGAG...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CAA 90 bp AGAGTTGTGGGGGAGGAGACTTTGAGCAGCAGGACGAAGAAAGGAAGATGTCTGATTCAAAATCTGAGATaGCCCTGGGCTACTTTAGAT +
Preference number: 3 (lower is better)
Translates to: RVVGEETLSSRTKKGRCLIQNLR*PWATLD
Trigger: ATCTAAAGTAGCCCAGGGCAATCTCAGATTTTGAAT...CAGACATCTTCCTTTCTTCGTCCTGCTGCTCAAAGTCTCCTCCCCCACAACTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
3UTR TCA 72 bp ATGTGTGTGGATATACACACATGCCAGAAAAGGGCATaGTCCCTGGGAGCTGGATGGACATGTAATTGTGAG +
Preference number: 3 (lower is better)
Translates to: MCVDIHTCQKRA*SLGAGWTCNCE
Trigger: CTCACAATTACATGTCCATCCAGCTCCCAGGGATCATGCCCTTTTCTGGCATGTGTGTATATCCACACACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 72 bp TTCTCTTGCACTAAGATCCCACACTGTAGCCTAGGCTaGCCTGTAACTCACAATGGAGTTCAAGCTGGCTTT +
Preference number: 3 (lower is better)
Translates to: FSCTKIPHCSLG*PVTHNGVQAGF
Trigger: AAAGCCAGCTTGAACTCCATTGTGAGTTACAGGTCAGCCTAGGCTACAGTGTGGGATCTTAGTGCAAGAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 72 bp TTGGAGGGTCACTGGACCCTCTTTTTGCCTATCCATTaGGCCATTTCTCCAGCCGCATCTTTTGTTTCTAAG +
Preference number: 3 (lower is better)
Translates to: LEGHWTLFLPIH*AISPAASFVSK
Trigger: CTTAGAAACAAAAGATGCGGCTGGAGAAATGGCTCAATGGATAGGCAAAAAGAGGGTCCAGTGACCCTCCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 72 bp CACCTTGGCATTCTTAGAATGAGTTCTCTCTCAACATaGGATTCTGAGCTGGGAATGCAGAGCCTAGGCCAT +
Preference number: 3 (lower is better)
Translates to: HLGILRMSSLST*DSELGMQSLGH
Trigger: ATGGCCTAGGCTCTGCATTCCCAGCTCAGAATCTCATGTTGAGAGAGAACTCATTCTAAGAATGCCAAGGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 72 bp ATGGTGGCTCAGTCTGTAATCTTAGTACATGGGAGATaGAGGCATAAGGATTGCTGTGAGTCCTGGGCTAGT +
Preference number: 3 (lower is better)
Translates to: MVAQSVILVHGR*RHKDCCESWAS
Trigger: ACTAGCCCAGGACTCACAGCAATCCTTATGCCTTCATCTCCCATGTACTAAGATTACAGACTGAGCCACCAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp TTTGGTCCCTATCACTGTGCACTGACAAGGAGCCTTTaGATTTATTTTCTTGCTTCCCCACGAACATGGACC +
Preference number: 3 (lower is better)
Translates to: FGPYHCALTRSL*IYFLASPRTWT
Trigger: GGTCCATGTTCGTGGGGAAGCAAGAAAATAAATGCAAAGGCTCCTTGTCAGTGCACAGTGATAGGGACCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp AGCCATGATGGTGGCTCACTTTGGTCCCTATCACTGTaGACTGACAAGGAGCCTTTGCATTTATTTTCTTGC +
Preference number: 3 (lower is better)
Translates to: SHDGGSLWSLSL*TDKEPLHLFSC
Trigger: GCAAGAAAATAAATGCAAAGGCTCCTTGTCAGTGCACAGTGATAGGGACCAAAGTGAGCCACCATCATGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 72 bp AGCCTTTGCATTTATTTTCTTGCTTCCCCACGAACATaGACCATCTCCTCGGGCCTCAACTTCCTTAATGCT +
Preference number: 3 (lower is better)
Translates to: SLCIYFLASPRT*TISSGLNFLNA
Trigger: AGCATTAAGGAAGTTGAGGCCCGAGGAGATGGTCCATGTTCGTGGGGAAGCAAGAAAATAAATGCAAAGGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CAA 90 bp TTTTCTAACTCAGAGACCTCATGCTCAAAAGTGACTTGGAACAATGAAACTTGGTTTGGTCCTGGTCCTTaGGTCCCTCAGATGCCCCTA +
Preference number: 3 (lower is better)
Translates to: FSNSETSCSKVTWNNETWFGPGP*VPQMPL
Trigger: TAGGGGCATCTGAGGGACCAAAGGACCAGGACCAAA...CCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTTAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 72 bp ACTAGATGGACAGATCCCATCCCCACAGATACTACTTaGGATAACGAGGTGGTTAGGTACAGTTATCCTCTG +
Preference number: 3 (lower is better)
Translates to: TRWTDPIPTDTT*DNEVVRYSYPL
Trigger: CAGAGGATAACTGTACCTAACCACCTCGTTATCTCAAGTAGTATCTGTGGGGATGGGATCTGTCCATCTAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 72 bp CTCAGAGACCTCATGCTCAAAAGTGACTTGGAACAATaGAACTTGGTCCTCCTTAAAGGTGGAAAGAAGCCC +
Preference number: 3 (lower is better)
Translates to: LRDLMLKSDLEQ*NLVLLKGGKKP
Trigger: GGGCTTCTTTCCACCTTTAAGGAGGACCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp GCCCGTCACTGCTCCATCTGGTCATTTCCGGGTTTTTaGTGTTATTTTGAGAAAGATCTCACTGAAGCCAAA +
Preference number: 3 (lower is better)
Translates to: ARHCSIWSFPGF*CYFEKDLTEAK
Trigger: TTTGGCTTCAGTGAGATCTTTCTCAAAATAACAGCAAAAACCCGGAAATGACCAGATGGAGCAGTGACGGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 72 bp ATCTCACTGAAGCCAAAGCTGATCTTTAACTTACAGTaGTCTTCCGTCTCACCTCCCAAGTGCTGGGATTAT +
Preference number: 3 (lower is better)
Translates to: ISLKPKLIFNLQ*SSVSPPKCWDY
Trigger: ATAATCCCAGCACTTGGGAGGTGAGACGGAAGACCACTGTAAGTTAAAGATCAGCTTTGGCTTCAGTGAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 72 bp ACCTCATGCTCAAAAGTGACTTGGAACAATGAAACTTaGTCCTCCTTAAAGGTGGAAAGAAGCCCTGCTCAG +
Preference number: 3 (lower is better)
Translates to: TSCSKVTWNNET*SSLKVERSPAQ
Trigger: CTGAGCAGGGCTTCTTTCCACCTTTAAGGAGGACCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CAA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCTATAAAAACTGTCTGTaGCCAGGTGCCTTTAATTCC +
Preference number: 3 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSYKNCL*PGAFNS
Trigger: GGAATTAAAGGCACCTGGCAACAGACAGTTTTTATA...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 72 bp AGGCACAATGCTCAGGTGTCTAATTTTTGTGGTTTTTaGGACAGGTTCACACAATGTAGTTCAGGCTGGCCT +
Preference number: 3 (lower is better)
Translates to: RHNAQVSNFCGF*DRFTQCSSGWP
Trigger: AGGCCAGCCTGAACTACATTGTGTGAACCTGTCTCAAAAACCACAAAAATTAGACACCTGAGCATTGTGCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 72 bp TTCATCTGCTCAAGTAGAGAACTGCAAGCTACTCTCTaGAACATCAGGACAGAAAGTGACCAGAGTTCACCA +
Preference number: 3 (lower is better)
Translates to: FICSSRELQATL*NIRTESDQSSP
Trigger: TGGTGAACTCTGGTCACTTTCTGTCCTGATGTTTCAGAGAGTAGCTTGCAGTTCTCTACTTGAGCAGATGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CCA 72 bp ACAGGTGCACCTGAGACCATGCATGGTTTGTTAGAGTaGGTGCTAAGATCTGAATTTGGACCTTCAAATTTG +
Preference number: 3 (lower is better)
Translates to: TGAPETMHGLLE*VLRSEFGPSNL
Trigger: CAAATTTGAAGGTCCAAATTCAGATCTTAGCACCCACTCTAACAAACCATGCATGGTCTCAGGTGCACCTGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CAA 90 bp TTTTCTAACTCAGAGACCTCATGCTCAAAAGTGACTTGGAACAATGAAACTTGGGTCTGCCACACTGCTTaGTGTTTGACAGAGTGCTCA +
Preference number: 3 (lower is better)
Translates to: FSNSETSCSKVTWNNETWVCHTA*CLTECS
Trigger: TGAGCACTCTGTCAAACACAAAGCAGTGTGGCAGAC...CCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTTAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CAA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAATTGCAGTCCTGGGGATaGAACCCAGGACCTCATAAA +
Preference number: 3 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKLQSWG*NPGPHK
Trigger: TTTATGAGGTCCTGGGTTCAATCCCCAGGACTGCAA...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CAA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTATTTCTGCCTGTTCACTaGAGACAGCGTCTCTCCCTG +
Preference number: 3 (lower is better)
Translates to: EDREDHNFLLLTSLITCVFLPVH*RQRLSL
Trigger: CAGGGAGAGACGCTGTCTCAAGTGAACAGGCAGAAA...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CAA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAATTTCTCTGTGTAGCCTaGGCTGTCCTGGAACTCACT +
Preference number: 3 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKFLCVA*AVLELT
Trigger: AGTGAGTTCCAGGACAGCCAAGGCTACACAGAGAAA...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 72 bp AGCAAGGCCAGGGAGCAGAGTTGCTACTGTAACAGTTaGCATAGCAAGATGTCAGAAACTAAGTGGAAATAT +
Preference number: 3 (lower is better)
Translates to: SKAREQSCYCNS*HSKMSETKWKY
Trigger: ATATTTCCACTTAGTTTCTGACATCTTGCTATGTCAACTGTTACAGTAGCAACTCTGCTCCCTGGCCTTGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 72 bp GTGTTGTGCACTAGTGATCCAGGGCACACATGTGCATaGATTCTAAGGCATGTTCCTCCAAATTGTAACATT +
Preference number: 3 (lower is better)
Translates to: VLCTSDPGHTCA*ILRHVPPNCNI
Trigger: AATGTTACAATTTGGAGGAACATGCCTTAGAATTCATGCACATGTGTGCCCTGGATCACTAGTGCACAACAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
3UTR GCA 72 bp ACTGTCTGTCTCTCCTTTTCTAACTCAGAGACCTCATaGTCAAAAGTGACTTGGAACAATGAAACTTGGTCC +
Preference number: 3 (lower is better)
Translates to: TVCLSFSNSETS*SKVTWNNETWS
Trigger: GGACCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTTAGAAAAGGAGAGACAGACAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CAA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTACTTTTTGCCTATCCATaGAGCCATTTCTCCAGCCGC +
Preference number: 3 (lower is better)
Translates to: EDREDHNFLLLTSLITCVLFAYP*SHFSSR
Trigger: GCGGCTGGAGAAATGGCTCAATGGATAGGCAAAAAG...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp CTAACTCTGAATCCCAAGTGCTGGGATTTCTCACGTTaGCCTGTGCTTGACTATTCAATAATAATCTCTAAC +
Preference number: 3 (lower is better)
Translates to: LTLNPKCWDFSR*PVLDYSIIISN
Trigger: GTTAGAGATTATTATTGAATAGTCAAGCACAGGGCAACGTGAGAAATCCCAGCACTTGGGATTCAGAGTTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CAA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTACTCAAACTTGAGAAATaGCCAAGGATGACTCTCGCC +
Preference number: 3 (lower is better)
Translates to: EDREDHNFLLLTSLITCVLKLEK*PRMTLA
Trigger: GGCGAGAGTCATCCTTGGCAATTTCTCAAGTTTGAG...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 72 bp GTAGGGTCTATAATTCCCTGTATTAATCTACAGCCCTaGCTTAACACTGTATTCCTGAAAGCAGCTTTACTG +
Preference number: 3 (lower is better)
Translates to: VGSIIPCINLQP*LNTVFLKAALL
Trigger: CAGTAAAGCTGCTTTCAGGAATACAGTGTTAAGTCAGGGCTGTAGATTAATACAGGGAATTATAGACCCTAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp CTTTTCAGTAGGTTAACTAGGGAGAACTTGTGTGCCTaGTCTTTACAACTGTATGCTATCCTTTACTTTTCC +
Preference number: 3 (lower is better)
Translates to: LFSRLTRENLCA*SLQLYAILYFS
Trigger: GGAAAAGTAAAGGATAGCATACAGTTGTAAAGAGCAGGCACACAAGTTCTCCCTAGTTAACCTACTGAAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CAA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAATACTTATTTGGGCGTTaGTGTGTGCTGTCTATATGT +
Preference number: 3 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKYLFGR*CVLSIC
Trigger: ACATATAGACAGCACACACAAACGCCCAAATAAGTA...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 72 bp GACCATGCATGGTTTGTTAGAGTGGGTGCTAAGATCTaGATTTGGACCTTCAAATTTGTATATAGCAACAAG +
Preference number: 3 (lower is better)
Translates to: DHAWFVRVGAKI*IWTFKFVYSNK
Trigger: CTTGTTGCTATATACAAATTTGAAGGTCCAAATTCAGATCTTAGCACCCACTCTAACAAACCATGCATGGTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR GCA 72 bp TCCTTTACTTTTCCTCAAGAGGAGGCTTCCTACAACTaGATCAATCTCATAAATCTAAGGCATATTTTCAGG +
Preference number: 3 (lower is better)
Translates to: SFTFPQEEASYN*INLINLRHIFR
Trigger: CCTGAAAATATGCCTTAGATTTATGAGATTGATGCAGTTGTAGGAAGCCTCCTCTTGAGGAAAAGTAAAGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR-3UTR CAA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAATTAATTTCTACTTATTaGGGCGTTTGTGTGTGCTGT +
Preference number: 3 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKLISTY*GVCVCC
Trigger: ACAGCACACACAAACGCCCAAATAAGTAGAAATTAA...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR TCA 72 bp TCAGTCTATTTTGAGCCAAAAATGATTCTATACCTCTaGAACACTGCAACAAATTATCCCACTAATCAAGGT +
Preference number: 3 (lower is better)
Translates to: SVYFEPKMILYL*NTATNYPTNQG
Trigger: ACCTTGATTAGTGGGATAATTTGTTGCAGTGTTTCAGAGGTATAGAATCATTTTTGGCTCAAAATAGACTGA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CAA 72 bp CTGTGGGCCAGGCTAGTTAGAATCCCAAGGACCTGCTaGCCTCTGCTCCCCAAGTGCAGGGATGAGAGCCCG +
Preference number: 4 (lower is better)
Translates to: LWARLVRIPRTC*PLLPKCRDESP
Trigger: CGGGCTCTCATCCCTGCACTTGGGGAGCAGAGGCAAGCAGGTCCTTGGGATTCTAACTAGCCTGGCCCACAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp ACTCACACTAAATCAACAGGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACTCGACGACATCCCGGTaGTGGTGCTCTGTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: THTKSTGANLPSLVSLPHSTTSR*WCSVAQ
Trigger: CTGGGCCACAGAGCACCATCACCGGGATGTCGTCGA...GTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTTAGTGTGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp GAGGAACAGACGCCGGGAAGATTCTTGAAAGCCCCACTAACAGTAAAGGGAGCATCGACGACATCCCGGTaGTGGTGCTCTGTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: EEQTPGRFLKAPLTVKGASTTSR*WCSVAQ
Trigger: CTGGGCCACAGAGCACCATCACCGGGATGTCGTCGA...TGCTCCCTTTACTGTTAGTGGGGCTTTCAAGAATCTTCCCGGCGTCTGTTCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
CDS-3UTR TCA 90 bp ACTCACACTAAATCAACAGGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACGTCTCCTCTGCAACCTaGCCAGCAGGCACAGTTAGA +
Preference number: 4 (lower is better)
Translates to: THTKSTGANLPSLVSLPHVSSAT*PAGTVR
Trigger: TCTAACTGTGCCTGCTGGTCAGGTTGCAGAGGAGAC...GTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTTAGTGTGAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CAA 72 bp CTACCCACCCCTACATGGCCTTGGCAGAAGGACACATaGAGCAAGGCCAGGGAGCAGAGTTGCTACTGTAAC +
Preference number: 4 (lower is better)
Translates to: LPTPTWPWQKDT*SKAREQSCYCN
Trigger: GTTACAGTAGCAACTCTGCTCCCTGGCCTTGCTCAATGTGTCCTTCTGCCAAGGCCATGTAGGGGTGGGTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp GTCCTCCATTACTTTCTGCCTGTTCACTTGAGACAGCGTCTCTCCCTGAACCTGTACTGGGCTGCAAGGTaGAGCGGTGATGTTCCGAGC +
Preference number: 4 (lower is better)
Translates to: VLHYFLPVHLRQRLSLNLYWAAR*SGDVPS
Trigger: GCTCGGAACATCACCGCTTCACCTTGCAGCCCAGTA...CAGGTTCAGGGAGAGACGCTGTCTCAAGTGAACAGGCAGAAAGTAATGGAGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR GCA 90 bp ACTCACACTAAATCAACAGGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACTCAGCTGCAGCCATATaGAAAGGGGTCCTGTCCACT +
Preference number: 4 (lower is better)
Translates to: THTKSTGANLPSLVSLPHSAAAI*KGVLST
Trigger: AGTGGACAGGACCCCTTTGCATATGGCTGCAGCTGA...GTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTTAGTGTGAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp GTCCTCCATTACTTTCTGCCTGTTCACTTGAGACAGCGTCTCTCCCTGAACCTGGGTGATGGTGCTCTGTaGCCCAGTGCAGAGCTGTCA +
Preference number: 4 (lower is better)
Translates to: VLHYFLPVHLRQRLSLNLGDGAL*PSAELS
Trigger: TGACAGCTCTGCACTGGGCCACAGAGCACCATCACC...CAGGTTCAGGGAGAGACGCTGTCTCAAGTGAACAGGCAGAAAGTAATGGAGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp ACTAAATCAACAGGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACTGCTTTCACAGGGTTAGCCACTaGGTTGGCTCTCTCGTGGTT +
Preference number: 4 (lower is better)
Translates to: TKSTGANLPSLVSLPHCFHRVSH*VGSLVV
Trigger: AACCACGAGAGAGCCAACCCAGTGGCTAACCCTGTG...AAAGCAGTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTTAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CAA 72 bp CCCTGGGAGCTGGATGGACATGTAATTGTGAGCAGCTaGACTCGGGTGCTAGGAATGGAACCCAGGTTCTCT +
Preference number: 4 (lower is better)
Translates to: PWELDGHVIVSS*TRVLGMEPRFS
Trigger: AGAGAACCTGGGTTCCATTCCTAGCACCCGAGTCAAGCTGCTCACAATTACATGTCCATCCAGCTCCCAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp GGGAAGATTCTTGAAAGCCCCACTAACAGTAAAGGGAGCAAAGAGTTGTGGGGGCGAGCCAGTCTGTGGTaGATGGAGCCCCATTTGCCA +
Preference number: 4 (lower is better)
Translates to: GKILESPTNSKGSKELWGRASLW*MEPHLP
Trigger: TGGCAAATGGGGCTCCATTCACCACAGACTGGCTCG...CCCCCACAACTCTTTGCTCCCTTTACTGTTAGTGGGGCTTTCAAGAATCTTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
CDS-3UTR TCA 90 bp GGGAAGATTCTTGAAAGCCCCACTAACAGTAAAGGGAGCAAAGAGTTGTGGGGGTACTGGGCTGCAAGGTaGAGCGGTGATGTTCCGAGC +
Preference number: 4 (lower is better)
Translates to: GKILESPTNSKGSKELWGYWAAR*SGDVPS
Trigger: GCTCGGAACATCACCGCTTCACCTTGCAGCCCAGTA...CCCCCACAACTCTTTGCTCCCTTTACTGTTAGTGGGGCTTTCAAGAATCTTCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
CDS-3UTR GCA 90 bp CCCTCAGATGCCCCTAAAGTGGCTCTGAGTTTTCCAGCTGCACACACAGCCTTCGAATGGAGCCCCATTTaGCATCAGTGTCCTCACTTC +
Preference number: 4 (lower is better)
Translates to: PSDAPKVALSFPAAHTAFEWSPI*HQCPHF
Trigger: GAAGTGAGGACACTGATGGCAAATGGGGCTCCATTC...GAAGGCTGTGTGTGCAGCTGGAAAACTCAGAGCCACTTTAGGGGCATCTGAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CAA 72 bp CAAACCTCCCCAGCCTGGTCAGTCTGCCACACTGCTTaGTGTTTGACAGAGTGCTCAGTGCTACAGAAAGCA +
Preference number: 4 (lower is better)
Translates to: QTSPAWSVCHTA*CLTECSVLQKA
Trigger: TGCTTTCTGTAGCACTGAGCACTCTGTCAAACACAAAGCAGTGTGGCAGACTGACCAGGCTGGGGAGGTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CAA 72 bp GACCAGAGTTCACCACGTGCCTCAGTTCTTACAGCATaGGAAGTGGCTGATGTTAGGGGATGTCCACCTTGG +
Preference number: 4 (lower is better)
Translates to: DQSSPRASVLTA*EVADVRGCPPW
Trigger: CCAAGGTGGACATCCCCTAACATCAGCCACTTCCAATGCTGTAAGAACTGAGGCACGTGGTGAACTCTGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGTACTGGGCTGCAAGGTaGAGCGGTGATGTTCCGAGC +
Preference number: 4 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWYWAAR*SGDVPS
Trigger: GCTCGGAACATCACCGCTTCACCTTGCAGCCCAGTA...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp ACTAAATCAACAGGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACTGCTTTAGCAGTTCCACGATGTaGACATGTCCATCAGCTGCA +
Preference number: 4 (lower is better)
Translates to: TKSTGANLPSLVSLPHCFSSSTM*TCPSAA
Trigger: TGCAGCTGATGGACATGTTCACATCGTGGAACTGCT...AAAGCAGTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTTAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR GCA 90 bp TCTACTTCCCGAGTGCTGGAACTCAAGGCATGTGTCACCACATCTGGCCCTCTTGAATGGAGCCCCATTTaGCATCAGTGTCCTCACTTC +
Preference number: 4 (lower is better)
Translates to: STSRVLELKACVTTSGPLEWSPI*HQCPHF
Trigger: GAAGTGAGGACACTGATGGCAAATGGGGCTCCATTC...AAGAGGGCCAGATGTGGTGACACATGCCTTGAGTTCCAGCACTCGGGAAGTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp ACTCACACTAAATCAACAGGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACGAGCTGAGGTTGCTTTaGTGTTGGCTGAAGAGACAA +
Preference number: 4 (lower is better)
Translates to: THTKSTGANLPSLVSLPHELRLL*CWLKRQ
Trigger: TTGTCTCTTCAGCCAACACCAAAGCAACCTCAGCTC...GTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTTAGTGTGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGATGGTGATGACCCTCTaGCCTCCACTCCCCACCACT +
Preference number: 4 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWMVMTL*PPLPTT
Trigger: AGTGGTGGGGAGTGGAGGCCAGAGGGTCATCACCAT...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp CCCTCAGATGCCCCTAAAGTGGCTCTGAGTTTTCCAGCTGCACACACAGCCTTCCATCTCTGCCATCCTTaGTCTCTTCACCAATGGCAA +
Preference number: 4 (lower is better)
Translates to: PSDAPKVALSFPAAHTAFHLCHP*SLHQWQ
Trigger: TTGCCATTGGTGAAGAGACCAAGGATGGCAGAGATG...GAAGGCTGTGTGTGCAGCTGGAAAACTCAGAGCCACTTTAGGGGCATCTGAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp GACAGAGTGCTCAGTGCTACAGAAAGCACCAGTGTCCCACATGACACAGAAAATTGGTGTCTGTACTCCTaGGCTCTTCGGTTGGCCTCC +
Preference number: 4 (lower is better)
Translates to: DRVLSATESTSVPHDTENWCLYS*ALRLAS
Trigger: GGAGGCCAACCGAAGAGCCCAGGAGTACAGACACCA...ATTTTCTGTGTCATGTGGGACACTGGTGCTTTCTGTAGCACTGAGCACTCTGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp ACTAAATCAACAGGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACTGCTTTTCTTTCTTGAGGAGCTaGTGTCTGTACTCCTGGGCT +
Preference number: 4 (lower is better)
Translates to: TKSTGANLPSLVSLPHCFSFLRS*CLYSWA
Trigger: AGCCCAGGAGTACAGACACCAGCTCCTCAAGAAAGA...AAAGCAGTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTTAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp ATGTGCTCTAAGGATGTAAACAAAAGCCACCTACAAAGAAACCTGCTCCCTCTATCGACGACATCCCGGTaGTGGTGCTCTGTGGCCCAG +
Preference number: 4 (lower is better)
Translates to: MCSKDVNKSHLQRNLLPLSTTSR*WCSVAQ
Trigger: CTGGGCCACAGAGCACCATCACCGGGATGTCGTCGA...TAGAGGGAGCAGGTTTCTTTGTAGGTGGCTTTTGTTTACATCCTTAGAGCACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp GTCCTCCATTACTTTCTGCCTGTTCACTTGAGACAGCGTCTCTCCCTGAACCTGTGCTTTGGTGTTGGCTaGAGAGACAAAGCTAGCGAG +
Preference number: 4 (lower is better)
Translates to: VLHYFLPVHLRQRLSLNLCFGVG*RDKASE
Trigger: CTCGCTAGCTTTGTCTCTTCAGCCAACACCAAAGCA...CAGGTTCAGGGAGAGACGCTGTCTCAAGTGAACAGGCAGAAAGTAATGGAGGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGGCCTCCAGCAGGGAGTaGTGTTTGGATGTTACCCAG +
Preference number: 4 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWASSRE*CLDVTQ
Trigger: CTGGGTAACATCCAAACATCACTCCCTGCTGGAGGC...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp GTGGTTTTTGAGACAGGTTCACACAATGTAGTTCAGGCTGGCCTTGCACTCATGGCCTCCAGCAGGGAGTaGTGTTTGGATGTTACCCAG +
Preference number: 4 (lower is better)
Translates to: VVFETGSHNVVQAGLALMASSRE*CLDVTQ
Trigger: CTGGGTAACATCCAAACATCACTCCCTGCTGGAGGC...CATGAGTGCAAGGCCAGCCTGAACTACATTGTGTGAACCTGTCTCAAAAACCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGGTCTCCTCTGCAACCTaGCCAGCAGGCACAGTTAGA +
Preference number: 4 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWVSSAT*PAGTVR
Trigger: TCTAACTGTGCCTGCTGGTCAGGTTGCAGAGGAGAC...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR GCA 90 bp GGGAAGATTCTTGAAAGCCCCACTAACAGTAAAGGGAGCAAAGAGTTGTGGGGGTCAGCTGCAGCCATATaGAAAGGGGTCCTGTCCACT +
Preference number: 4 (lower is better)
Translates to: GKILESPTNSKGSKELWGSAAAI*KGVLST
Trigger: AGTGGACAGGACCCCTTTGCATATGGCTGCAGCTGA...CCCCCACAACTCTTTGCTCCCTTTACTGTTAGTGGGGCTTTCAAGAATCTTCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
CDS-3UTR CCA 90 bp TCTACTTCCCGAGTGCTGGAACTCAAGGCATGTGTCACCACATCTGGCCCTCTTCATCTCTGCCATCCTTaGTCTCTTCACCAATGGCAA +
Preference number: 4 (lower is better)
Translates to: STSRVLELKACVTTSGPLHLCHP*SLHQWQ
Trigger: TTGCCATTGGTGAAGAGACCAAGGATGGCAGAGATG...AAGAGGGCCAGATGTGGTGACACATGCCTTGAGTTCCAGCACTCGGGAAGTAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CAA 72 bp TTTGAGCAGCAGGACGAAGAAAGGAAGATGTCTGGATaGTGGAGCTGCCTGAAAGCTGGGCAGCTCTCAGAA +
Preference number: 4 (lower is better)
Translates to: FEQQDEERKMSG*WSCLKAGQLSE
Trigger: TTCTGAGAGCTGCCCAGCTTTCAGGCAGCTCCACAATCCAGACATCTTCCTTTCTTCGTCCTGCTGCTCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
CDS-3UTR TCA 90 bp ACTCACACTAAATCAACAGGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACTTCTGCATTGCTTCCTaGAGCATGACCAAAATCTCA +
Preference number: 4 (lower is better)
Translates to: THTKSTGANLPSLVSLPHFCIAS*SMTKIS
Trigger: TGAGATTTTGGTCATGCTTCAGGAAGCAATGCAGAA...GTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTTAGTGTGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR GCA 90 bp TGGAGCTGCCTGAAAGCTGGGCAGCTCTCAGAACCAGAAAAGATCTGTAGTCTTGAATGGAGCCCCATTTaGCATCAGTGTCCTCACTTC +
Preference number: 4 (lower is better)
Translates to: WSCLKAGQLSEPEKICSLEWSPI*HQCPHF
Trigger: GAAGTGAGGACACTGATGGCAAATGGGGCTCCATTC...AAGACTACAGATCTTTTCTGGTTCTGAGAGCTGCCCAGCTTTCAGGCAGCTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
3UTR CAA 72 bp ACAGCTGATCATTGTGCCTCATGCTGTAATCCCCACTaGGAGGGTCACTGGACCCTCTTTTTGCCTATCCAT +
Preference number: 4 (lower is better)
Translates to: TADHCASCCNPH*EGHWTLFLPIH
Trigger: ATGGATAGGCAAAAAGAGGGTCCAGTGACCCTCCAAGTGGGGATTACAGCATGAGGCACAATGATCAGCTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp GGATTACAGGCACGAGGCACAATGCTCAGGTGTCTAATTTTTGTGGTTTTTGAGTGCAAGGTGAAGCGGTaGTGTTCCGAGCCAGTCTGT +
Preference number: 4 (lower is better)
Translates to: GLQARGTMLRCLIFVVFECKVKR*CSEPVC
Trigger: ACAGACTGGCTCGGAACATCACCGCTTCACCTTGCA...CTCAAAAACCACAAAAATTAGACACCTGAGCATTGTGCCTCGTGCCTGTAATCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp TCTACTTCCCGAGTGCTGGAACTCAAGGCATGTGTCACCACATCTGGCCCTCTTTCCATTTCTTCTAAATaGGCTGAGGTTGCTTTGGTG +
Preference number: 4 (lower is better)
Translates to: STSRVLELKACVTTSGPLSISSK*AEVALV
Trigger: CACCAAAGCAACCTCAGCTCATTTAGAAGAAATGGA...AAGAGGGCCAGATGTGGTGACACATGCCTTGAGTTCCAGCACTCGGGAAGTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp GGATTACAGGCACGAGGCACAATGCTCAGGTGTCTAATTTTTGTGGTTTTTGAGGTCTCCTCTGCAACCTaGCCAGCAGGCACAGTTAGA +
Preference number: 4 (lower is better)
Translates to: GLQARGTMLRCLIFVVFEVSSAT*PAGTVR
Trigger: TCTAACTGTGCCTGCTGGTCAGGTTGCAGAGGAGAC...CTCAAAAACCACAAAAATTAGACACCTGAGCATTGTGCCTCGTGCCTGTAATCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp ACTAAATCAACAGGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACTGCTTTTCCTTCCTGACTTCATaGCTTGTGTTGCTCTTTCTA +
Preference number: 4 (lower is better)
Translates to: TKSTGANLPSLVSLPHCFSFLTS*LVLLFL
Trigger: TAGAAAGAGCAACACAAGTCATGAAGTCAGGAAGGA...AAAGCAGTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTTAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGGTTACAATAAATGGCTaGCCAATGCCTCCAGCAGGG +
Preference number: 4 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWVTING*PMPPAG
Trigger: CCCTGCTGGAGGCATTGGCCAGCCATTTATTGTAAC...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp ACTAAATCAACAGGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACTGCTTTTGGTCTCTTCACCAATaGCAATTTCTCTTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: TKSTGANLPSLVSLPHCFWSLHQ*QFLFFL
Trigger: GAGGAAGAAGAGAAATTGCCATTGGTGAAGAGACCA...AAAGCAGTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTTAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGTCTTTCTTGAGGAGCTaGTGTCTGTACTCCTGGGCT +
Preference number: 4 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWSFLRS*CLYSWA
Trigger: AGCCCAGGAGTACAGACACCAGCTCCTCAAGAAAGA...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CAA 72 bp GTACATACAGTGTCAAAGGACGAACCCAGGGCTTCCTaGCAAGCTAAGCACCACGTTCTACCACTGAACTAT +
Preference number: 4 (lower is better)
Translates to: VHTVSKDEPRAS*QAKHHVLPLNY
Trigger: ATAGTTCAGTGGTAGAACGTGGTGCTTAGCTTGCAAGGAAGCCCTGGGTTCGTCCTTTGACACTGTATGTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CAA 72 bp TGCCTATCCATTGAGCCATTTCTCCAGCCGCATCTTTaGTTTCTAAGATACTGCCTTCGTGTAGCCCGGGAT +
Preference number: 4 (lower is better)
Translates to: CLSIEPFLQPHL*FLRYCLRVARD
Trigger: ATCCCGGGCTACACGAAGGCAGTATCTTAGAAACAAAAGATGCGGCTGGAGAAATGGCTCAATGGATAGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR GCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGCTTCATGACTTGTGTTaGTCTTTCTACCTCGTCCCC +
Preference number: 4 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWLHDLC*SFYLVP
Trigger: GGGGACGAGGTAGAAAGAGCAACACAAGTCATGAAG...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp TCTTTTTGCCTATCCATTGAGCCATTTCTCCAGCCGCATCTTTTGTTTCTAAGAATGGTGATGACCCTCTaGCCTCCACTCCCCACCACT +
Preference number: 4 (lower is better)
Translates to: SFCLSIEPFLQPHLLFLRMVMTL*PPLPTT
Trigger: AGTGGTGGGGAGTGGAGGCCAGAGGGTCATCACCAT...TCTTAGAAACAAAAGATGCGGCTGGAGAAATGGCTCAATGGATAGGCAAAAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGCATCTCTGCCATCCTTaGTCTCTTCACCAATGGCAA +
Preference number: 4 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWHLCHP*SLHQWQ
Trigger: TTGCCATTGGTGAAGAGACCAAGGATGGCAGAGATG...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp TTTTCTAACTCAGAGACCTCATGCTCAAAAGTGACTTGGAACAATGAAACTTGGCGAGCCAGTCTGTGGTaGATGGAGCCCCATTTGCCA +
Preference number: 4 (lower is better)
Translates to: FSNSETSCSKVTWNNETWRASLW*MEPHLP
Trigger: TGGCAAATGGGGCTCCATTCACCACAGACTGGCTCG...CCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTTAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp TTTTCTAACTCAGAGACCTCATGCTCAAAAGTGACTTGGAACAATGAAACTTGGTACTGGGCTGCAAGGTaGAGCGGTGATGTTCCGAGC +
Preference number: 4 (lower is better)
Translates to: FSNSETSCSKVTWNNETWYWAAR*SGDVPS
Trigger: GCTCGGAACATCACCGCTTCACCTTGCAGCCCAGTA...CCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTTAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR GCA 90 bp ATGTGCTCTAAGGATGTAAACAAAAGCCACCTACAAAGAAACCTGCTCCCTCTATCAGCTGCAGCCATATaGAAAGGGGTCCTGTCCACT +
Preference number: 4 (lower is better)
Translates to: MCSKDVNKSHLQRNLLPLSAAAI*KGVLST
Trigger: AGTGGACAGGACCCCTTTGCATATGGCTGCAGCTGA...TAGAGGGAGCAGGTTTCTTTGTAGGTGGCTTTTGTTTACATCCTTAGAGCACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR GCA 90 bp GGATTACAGGCACGAGGCACAATGCTCAGGTGTCTAATTTTTGTGGTTTTTGAGTCCTGGAGCTGTTGCTaGAGTAGCTCTCTTTCACTG +
Preference number: 4 (lower is better)
Translates to: GLQARGTMLRCLIFVVFESWSCC*SSSLSL
Trigger: CAGTGAAAGAGAGCTACTGCAGCAACAGCTCCAGGA...CTCAAAAACCACAAAAATTAGACACCTGAGCATTGTGCCTCGTGCCTGTAATCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAAGGTGATGGTGCTCTGTaGCCCAGTGCAGAGCTGTCA +
Preference number: 4 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKGDGAL*PSAELS
Trigger: TGACAGCTCTGCACTGGGCCACAGAGCACCATCACC...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp TTTTCTAACTCAGAGACCTCATGCTCAAAAGTGACTTGGAACAATGAAACTTGGATGGTGATGACCCTCTaGCCTCCACTCCCCACCACT +
Preference number: 4 (lower is better)
Translates to: FSNSETSCSKVTWNNETWMVMTL*PPLPTT
Trigger: AGTGGTGGGGAGTGGAGGCCAGAGGGTCATCACCAT...CCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTTAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp CCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCAAAGACAAGAGCCATGGCATAGTTACAATAAATaGCTGGCCAATGCCTCCAGC +
Preference number: 4 (lower is better)
Translates to: PTNYVPVPGKAFQRQEPWHSYNK*LANASS
Trigger: GCTGGAGGCATTGGCCAGCCATTTATTGTAACTATG...CCATGGCTCTTGTCTTTGGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp TTTTCTAACTCAGAGACCTCATGCTCAAAAGTGACTTGGAACAATGAAACTTGGTGGTGTCTGTACTCCTaGGCTCTTCGGTTGGCCTCC +
Preference number: 4 (lower is better)
Translates to: FSNSETSCSKVTWNNETWWCLYS*ALRLAS
Trigger: GGAGGCCAACCGAAGAGCCCAGGAGTACAGACACCA...CCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTTAGAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp GGATTACAGGCACGAGGCACAATGCTCAGGTGTCTAATTTTTGTGGTTTTTGAGTCTTTCTTGAGGAGCTaGTGTCTGTACTCCTGGGCT +
Preference number: 4 (lower is better)
Translates to: GLQARGTMLRCLIFVVFESFLRS*CLYSWA
Trigger: AGCCCAGGAGTACAGACACCAGCTCCTCAAGAAAGA...CTCAAAAACCACAAAAATTAGACACCTGAGCATTGTGCCTCGTGCCTGTAATCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CAA 72 bp AATGTGCACGCAGCAAAGGGATATAAAAACTGTCTGTaGCCAGGTGCCTTTAATTCCAGCACTTGGGAGGTG +
Preference number: 4 (lower is better)
Translates to: NVHAAKGYKNCL*PGAFNSSTWEV
Trigger: CACCTCCCAAGTGCTGGAATTAAAGGCACCTGGCAACAGACAGTTTTTATATCCCTTTGCTGCGTGCACATT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CAA 72 bp CTTTGGTCCCTATCACTGTGCACTGACAAGGAGCCTTaGCATTTATTTTCTTGCTTCCCCACGAACATGGAC +
Preference number: 4 (lower is better)
Translates to: LWSLSLCTDKEP*HLFSCFPTNMD
Trigger: GTCCATGTTCGTGGGGAAGCAAGAAAATAAATGCAAAGGCTCCTTGTCAGTGCACAGTGATAGGGACCAAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTACGAGCCAGTCTGTGGTaGATGGAGCCCCATTTGCCA +
Preference number: 4 (lower is better)
Translates to: EDREDHNFLLLTSLITCVRASLW*MEPHLP
Trigger: TGGCAAATGGGGCTCCATTCACCACAGACTGGCTCG...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp ATGTGCTCTAAGGATGTAAACAAAAGCCACCTACAAAGAAACCTGCTCCCTCTAAGCAGTTCCACGATGTaGACATGTCCATCAGCTGCA +
Preference number: 4 (lower is better)
Translates to: MCSKDVNKSHLQRNLLPLSSSTM*TCPSAA
Trigger: TGCAGCTGATGGACATGTTCACATCGTGGAACTGCT...TAGAGGGAGCAGGTTTCTTTGTAGGTGGCTTTTGTTTACATCCTTAGAGCACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp GACAGAGTGCTCAGTGCTACAGAAAGCACCAGTGTCCCACATGACACAGAAAATTTCTGCATTGCTTCCTaGAGCATGACCAAAATCTCA +
Preference number: 4 (lower is better)
Translates to: DRVLSATESTSVPHDTENFCIAS*SMTKIS
Trigger: TGAGATTTTGGTCATGCTTCAGGAAGCAATGCAGAA...ATTTTCTGTGTCATGTGGGACACTGGTGCTTTCTGTAGCACTGAGCACTCTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp GACAGAGTGCTCAGTGCTACAGAAAGCACCAGTGTCCCACATGACACAGAAAATTCCATTTCTTCTAAATaGGCTGAGGTTGCTTTGGTG +
Preference number: 4 (lower is better)
Translates to: DRVLSATESTSVPHDTENSISSK*AEVALV
Trigger: CACCAAAGCAACCTCAGCTCATTTAGAAGAAATGGA...ATTTTCTGTGTCATGTGGGACACTGGTGCTTTCTGTAGCACTGAGCACTCTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCTCCATTTCTTCTAAATaGGCTGAGGTTGCTTTGGTG +
Preference number: 4 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSSISSK*AEVALV
Trigger: CACCAAAGCAACCTCAGCTCATTTAGAAGAAATGGA...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp TGGAGCTGCCTGAAAGCTGGGCAGCTCTCAGAACCAGAAAAGATCTGTAGTCTTAACACACCTGAAGCATaGCCAAAATCTCAGTATTGT +
Preference number: 4 (lower is better)
Translates to: WSCLKAGQLSEPEKICSLNTPEA*PKSQYC
Trigger: ACAATACTGAGATTTTGGTCATGCTTCAGGTGTGTT...AAGACTACAGATCTTTTCTGGTTCTGAGAGCTGCCCAGCTTTCAGGCAGCTCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
CDS-3UTR CCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTAGGTGATGGTGCTCTGTaGCCCAGTGCAGAGCTGTCA +
Preference number: 4 (lower is better)
Translates to: EDREDHNFLLLTSLITCVGDGAL*PSAELS
Trigger: TGACAGCTCTGCACTGGGCCACAGAGCACCATCACC...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp TCTTTTTGCCTATCCATTGAGCCATTTCTCCAGCCGCATCTTTTGTTTCTAAGATGCTTTGGTGTTGGCTaGAGAGACAAAGCTAGCGAG +
Preference number: 4 (lower is better)
Translates to: SFCLSIEPFLQPHLLFLRCFGVG*RDKASE
Trigger: CTCGCTAGCTTTGTCTCTTCAGCCAACACCAAAGCA...TCTTAGAAACAAAAGATGCGGCTGGAGAAATGGCTCAATGGATAGGCAAAAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp GGGAAGATTCTTGAAAGCCCCACTAACAGTAAAGGGAGCAAAGAGTTGTGGGGGATAAAGAAACACACCTaGAGCATGACCAAAATCTCA +
Preference number: 4 (lower is better)
Translates to: GKILESPTNSKGSKELWGIKKHT*SMTKIS
Trigger: TGAGATTTTGGTCATGCTTCAGGTGTGTTTCTTTAT...CCCCCACAACTCTTTGCTCCCTTTACTGTTAGTGGGGCTTTCAAGAATCTTCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
CDS-3UTR GCA 90 bp TCTTTTTGCCTATCCATTGAGCCATTTCTCCAGCCGCATCTTTTGTTTCTAAGAGAATGGAGCCCCATTTaGCATCAGTGTCCTCACTTC +
Preference number: 4 (lower is better)
Translates to: SFCLSIEPFLQPHLLFLREWSPI*HQCPHF
Trigger: GAAGTGAGGACACTGATGGCAAATGGGGCTCCATTC...TCTTAGAAACAAAAGATGCGGCTGGAGAAATGGCTCAATGGATAGGCAAAAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR GCA 90 bp TTTTCTAACTCAGAGACCTCATGCTCAAAAGTGACTTGGAACAATGAAACTTGGTCAGCTGCAGCCATATaGAAAGGGGTCCTGTCCACT +
Preference number: 4 (lower is better)
Translates to: FSNSETSCSKVTWNNETWSAAAI*KGVLST
Trigger: AGTGGACAGGACCCCTTTGCATATGGCTGCAGCTGA...CCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTTAGAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR GCA 90 bp CCTGTAACTCACAATGGAGTTCAAGCTGGCTTTAAACTCGTAATCTTTCTGTTTGCCTCCTGGAGCTGTTaGTGCAGTAGCTCTCTTTCA +
Preference number: 4 (lower is better)
Translates to: PVTHNGVQAGFKLVIFLFASWSC*CSSSLS
Trigger: TGAAAGAGAGCTACTGCAGCAACAGCTCCAGGAGGC...AAACAGAAAGATTACGAGTTTAAAGCCAGCTTGAACTCCATTGTGAGTTACAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR GCA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAAGCCTCCTGGAGCTGTTaGTGCAGTAGCTCTCTTTCA +
Preference number: 4 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKASWSC*CSSSLS
Trigger: TGAAAGAGAGCTACTGCAGCAACAGCTCCAGGAGGC...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp GTCATCTTTAATTACATTCAAAATCTGAGATTGCCCTGGGCTACTTTAGATACTGGTGATGGTGCTCTGTaGCCCAGTGCAGAGCTGTCA +
Preference number: 4 (lower is better)
Translates to: VIFNYIQNLRLPWATLDTGDGAL*PSAELS
Trigger: TGACAGCTCTGCACTGGGCCACAGAGCACCATCACC...AGTATCTAAAGTAGCCCAGGGCAATCTCAGATTTTGAATGTAATTAAAGATGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
CDS-3UTR CCA 90 bp ATGTGCTCTAAGGATGTAAACAAAAGCCACCTACAAAGAAACCTGCTCCCTCTAGAGCTGAGGTTGCTTTaGTGTTGGCTGAAGAGACAA +
Preference number: 4 (lower is better)
Translates to: MCSKDVNKSHLQRNLLPLELRLL*CWLKRQ
Trigger: TTGTCTCTTCAGCCAACACCAAAGCAACCTCAGCTC...TAGAGGGAGCAGGTTTCTTTGTAGGTGGCTTTTGTTTACATCCTTAGAGCACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp GTCATCTTTAATTACATTCAAAATCTGAGATTGCCCTGGGCTACTTTAGATACTTGCAAGGTGAAGCGGTaGTGTTCCGAGCCAGTCTGT +
Preference number: 4 (lower is better)
Translates to: VIFNYIQNLRLPWATLDTCKVKR*CSEPVC
Trigger: ACAGACTGGCTCGGAACATCACCGCTTCACCTTGCA...AGTATCTAAAGTAGCCCAGGGCAATCTCAGATTTTGAATGTAATTAAAGATGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
CDS-3UTR TCA 90 bp GGATTACAGGCACGAGGCACAATGCTCAGGTGTCTAATTTTTGTGGTTTTTGAGTCCTTCCTGACTTCATaGCTTGTGTTGCTCTTTCTA +
Preference number: 4 (lower is better)
Translates to: GLQARGTMLRCLIFVVFESFLTS*LVLLFL
Trigger: TAGAAAGAGCAACACAAGTCATGAAGTCAGGAAGGA...CTCAAAAACCACAAAAATTAGACACCTGAGCATTGTGCCTCGTGCCTGTAATCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR GCA 90 bp GGATTACAGGCACGAGGCACAATGCTCAGGTGTCTAATTTTTGTGGTTTTTGAGTCGAAGGAGCACTTCTaGTGTGGAATAATGACCATA +
Preference number: 4 (lower is better)
Translates to: GLQARGTMLRCLIFVVFESKEHF*CGIMTI
Trigger: TATGGTCATTATTCCACAGCAGAAGTGCTCCTTCGA...CTCAAAAACCACAAAAATTAGACACCTGAGCATTGTGCCTCGTGCCTGTAATCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR GCA 90 bp GGATTACAGGCACGAGGCACAATGCTCAGGTGTCTAATTTTTGTGGTTTTTGAGGTAGCTCTCTTTCACTaGCTTCCTTCATTTCCTCAA +
Preference number: 4 (lower is better)
Translates to: GLQARGTMLRCLIFVVFEVALFH*LPSFPQ
Trigger: TTGAGGAAATGAAGGAAGGCAGTGAAAGAGAGCTAC...CTCAAAAACCACAAAAATTAGACACCTGAGCATTGTGCCTCGTGCCTGTAATCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR GCA 90 bp TTTTCTAACTCAGAGACCTCATGCTCAAAAGTGACTTGGAACAATGAAACTTGGTCCTGGAGCTGTTGCTaGAGTAGCTCTCTTTCACTG +
Preference number: 4 (lower is better)
Translates to: FSNSETSCSKVTWNNETWSWSCC*SSSLSL
Trigger: CAGTGAAAGAGAGCTACTGCAGCAACAGCTCCAGGA...CCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTTAGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR GCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTAGCCTCCTGGAGCTGTTaGTGCAGTAGCTCTCTTTCA +
Preference number: 4 (lower is better)
Translates to: EDREDHNFLLLTSLITCVASWSC*CSSSLS
Trigger: TGAAAGAGAGCTACTGCAGCAACAGCTCCAGGAGGC...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp CCTGTAACTCACAATGGAGTTCAAGCTGGCTTTAAACTCGTAATCTTTCTGTTTGTTACAATAAATGGCTaGCCAATGCCTCCAGCAGGG +
Preference number: 4 (lower is better)
Translates to: PVTHNGVQAGFKLVIFLFVTING*PMPPAG
Trigger: CCCTGCTGGAGGCATTGGCCAGCCATTTATTGTAAC...AAACAGAAAGATTACGAGTTTAAAGCCAGCTTGAACTCCATTGTGAGTTACAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTAAGCAGTTCCACGATGTaGACATGTCCATCAGCTGCA +
Preference number: 4 (lower is better)
Translates to: EDREDHNFLLLTSLITCVSSSTM*TCPSAA
Trigger: TGCAGCTGATGGACATGTTCACATCGTGGAACTGCT...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR GCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTATCCTGGAGCTGTTGCTaGAGTAGCTCTCTTTCACTG +
Preference number: 4 (lower is better)
Translates to: EDREDHNFLLLTSLITCVSWSCC*SSSLSL
Trigger: CAGTGAAAGAGAGCTACTGCAGCAACAGCTCCAGGA...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR GCA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAACTTCATGACTTGTGTTaGTCTTTCTACCTCGTCCCC +
Preference number: 4 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKLHDLC*SFYLVP
Trigger: GGGGACGAGGTAGAAAGAGCAACACAAGTCATGAAG...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTAGTTACAATAAATGGCTaGCCAATGCCTCCAGCAGGG +
Preference number: 4 (lower is better)
Translates to: EDREDHNFLLLTSLITCVVTING*PMPPAG
Trigger: CCCTGCTGGAGGCATTGGCCAGCCATTTATTGTAAC...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp ATGTGCTCTAAGGATGTAAACAAAAGCCACCTACAAAGAAACCTGCTCCCTCTATGGTCTCTTCACCAATaGCAATTTCTCTTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: MCSKDVNKSHLQRNLLPLWSLHQ*QFLFFL
Trigger: GAGGAAGAAGAGAAATTGCCATTGGTGAAGAGACCA...TAGAGGGAGCAGGTTTCTTTGTAGGTGGCTTTTGTTTACATCCTTAGAGCACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp GTCATCTTTAATTACATTCAAAATCTGAGATTGCCCTGGGCTACTTTAGATACTAGCAGTTCCACGATGTaGACATGTCCATCAGCTGCA +
Preference number: 4 (lower is better)
Translates to: VIFNYIQNLRLPWATLDTSSSTM*TCPSAA
Trigger: TGCAGCTGATGGACATGTTCACATCGTGGAACTGCT...AGTATCTAAAGTAGCCCAGGGCAATCTCAGATTTTGAATGTAATTAAAGATGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
CDS-3UTR TCA 90 bp ATGTGCTCTAAGGATGTAAACAAAAGCCACCTACAAAGAAACCTGCTCCCTCTATTGCTTCCTGAAGCATaGCCAAAATCTCAGTATTGT +
Preference number: 4 (lower is better)
Translates to: MCSKDVNKSHLQRNLLPLLLPEA*PKSQYC
Trigger: ACAATACTGAGATTTTGGTCATGCTTCAGGAAGCAA...TAGAGGGAGCAGGTTTCTTTGTAGGTGGCTTTTGTTTACATCCTTAGAGCACAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR GCA 90 bp TCTTTTTGCCTATCCATTGAGCCATTTCTCCAGCCGCATCTTTTGTTTCTAAGAGTAGCTCTCTTTCACTaGCTTCCTTCATTTCCTCAA +
Preference number: 4 (lower is better)
Translates to: SFCLSIEPFLQPHLLFLRVALFH*LPSFPQ
Trigger: TTGAGGAAATGAAGGAAGGCAGTGAAAGAGAGCTAC...TCTTAGAAACAAAAGATGCGGCTGGAGAAATGGCTCAATGGATAGGCAAAAAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR GCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTACTTCATGACTTGTGTTaGTCTTTCTACCTCGTCCCC +
Preference number: 4 (lower is better)
Translates to: EDREDHNFLLLTSLITCVLHDLC*SFYLVP
Trigger: GGGGACGAGGTAGAAAGAGCAACACAAGTCATGAAG...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTAGAGCTGAGGTTGCTTTaGTGTTGGCTGAAGAGACAA +
Preference number: 4 (lower is better)
Translates to: EDREDHNFLLLTSLITCVELRLL*CWLKRQ
Trigger: TTGTCTCTTCAGCCAACACCAAAGCAACCTCAGCTC...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp CCTGTAACTCACAATGGAGTTCAAGCTGGCTTTAAACTCGTAATCTTTCTGTTTCATAGTTACAATAAATaGCTGGCCAATGCCTCCAGC +
Preference number: 4 (lower is better)
Translates to: PVTHNGVQAGFKLVIFLFHSYNK*LANASS
Trigger: GCTGGAGGCATTGGCCAGCCATTTATTGTAACTATG...AAACAGAAAGATTACGAGTTTAAAGCCAGCTTGAACTCCATTGTGAGTTACAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAATTCTGCATTGCTTCCTaGAGCATGACCAAAATCTCA +
Preference number: 4 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKFCIAS*SMTKIS
Trigger: TGAGATTTTGGTCATGCTTCAGGAAGCAATGCAGAA...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAATCCTTCCTGACTTCATaGCTTGTGTTGCTCTTTCTA +
Preference number: 4 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKSFLTS*LVLLFL
Trigger: TAGAAAGAGCAACACAAGTCATGAAGTCAGGAAGGA...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTACATAGTTACAATAAATaGCTGGCCAATGCCTCCAGC +
Preference number: 4 (lower is better)
Translates to: EDREDHNFLLLTSLITCVHSYNK*LANASS
Trigger: GCTGGAGGCATTGGCCAGCCATTTATTGTAACTATG...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CCA 90 bp TTTTCTAACTCAGAGACCTCATGCTCAAAAGTGACTTGGAACAATGAAACTTGGTGGTCTCTTCACCAATaGCAATTTCTCTTCTTCCTC +
Preference number: 4 (lower is better)
Translates to: FSNSETSCSKVTWNNETWWSLHQ*QFLFFL
Trigger: GAGGAAGAAGAGAAATTGCCATTGGTGAAGAGACCA...CCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTTAGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CAA 72 bp GAGTGGGTGCTAAGATCTGAATTTGGACCTTCAAATTaGTATATAGCAACAAGACAGCTGATCATTGTGCCT +
Preference number: 4 (lower is better)
Translates to: EWVLRSEFGPSN*YIATRQLIIVP
Trigger: AGGCACAATGATCAGCTGTCTTGTTGCTATATACAAATTTGAAGGTCCAAATTCAGATCTTAGCACCCACTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR TCA 90 bp TTTTCTAACTCAGAGACCTCATGCTCAAAAGTGACTTGGAACAATGAAACTTGGTTGCTTCCTGAAGCATaGCCAAAATCTCAGTATTGT +
Preference number: 4 (lower is better)
Translates to: FSNSETSCSKVTWNNETWLLPEA*PKSQYC
Trigger: ACAATACTGAGATTTTGGTCATGCTTCAGGAAGCAA...CCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTTAGAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
3UTR CAA 72 bp TCACATCCTGTCTATAAGACGTTTAAATATTGTTTTTaGCAGTCCTGGGGATTGAACCCAGGACCTCATAAA +
Preference number: 4 (lower is better)
Translates to: SHPVYKTFKYCF*QSWGLNPGPHK
Trigger: TTTATGAGGTCCTGGGTTCAATCCCCAGGACTGCAAAAAACAATATTTAAACGTCTTATAGACAGGATGTGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS TCA 90 bp TCCTCAACTACGGTGACATCAACTTCAACTCCGTTGGTCTGCTGCTaGGCCATAGCCTCCAGCCTGAGCCGATACTGCTCGGCCTCCTGC +
Preference number: 5 (lower is better)
Translates to: SSTTVTSTSTPLVCC*AIASSLSRYCSASC
Trigger: GCAGGAGGCCGAGCAGTATCGGCTCAGGCTGGAGGCTATGGCTCAGCAGCAGACCAACGGAGTTGAAGTTGATGTCACCGTAGTTGAGGA
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp ACTAAATCAACAGGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACTGCTTTGGGGTCCTGTCCACTTaGGTCCGGGCATCCCTGCTA +
Preference number: 5 (lower is better)
Translates to: TKSTGANLPSLVSLPHCFGVLST*VRASLL
Trigger: TAGCAGGGATGCCCGGACCAAAGTGGACAGGACCCC...AAAGCAGTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTTAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp CCCTCAGATGCCCCTAAAGTGGCTCTGAGTTTTCCAGCTGCACACACAGCCTTCTCCACTCCCCACCACTaGCTGGGTCGAGGAGTCAAG +
Preference number: 5 (lower is better)
Translates to: PSDAPKVALSFPAAHTAFSTPHH*LGRGVK
Trigger: CTTGACTCCTCGACCCAGCAAGTGGTGGGGAGTGGA...GAAGGCTGTGTGTGCAGCTGGAAAACTCAGAGCCACTTTAGGGGCATCTGAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS CCA 90 bp ATGTTACCCAGAGGGACTCCATCAGTCACGATGGTGATGACCCTCTaGCCTCCACTCCCCACCACTTGCTGGGTCGAGGAGTCAAGAGAA +
Preference number: 5 (lower is better)
Translates to: MLPRGTPSVTMVMTL*PPLPTTCWVEESRE
Trigger: TTCTCTTGACTCCTCGACCCAGCAAGTGGTGGGGAGTGGAGGCCAGAGGGTCATCACCATCGTGACTGATGGAGTCCCTCTGGGTAACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp GAGGAACAGACGCCGGGAAGATTCTTGAAAGCCCCACTAACAGTAAAGGGAGCAGGGGTCCTGTCCACTTaGGTCCGGGCATCCCTGCTA +
Preference number: 5 (lower is better)
Translates to: EEQTPGRFLKAPLTVKGAGVLST*VRASLL
Trigger: TAGCAGGGATGCCCGGACCAAAGTGGACAGGACCCC...TGCTCCCTTTACTGTTAGTGGGGCTTTCAAGAATCTTCCCGGCGTCTGTTCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
CDS-3UTR CAA 90 bp ACTAAATCAACAGGGGCAAACCTCCCCAGCCTGGTCAGTCTGCCACACTGCTTTTCCACTCCCCACCACTaGCTGGGTCGAGGAGTCAAG +
Preference number: 5 (lower is better)
Translates to: TKSTGANLPSLVSLPHCFSTPHH*LGRGVK
Trigger: CTTGACTCCTCGACCCAGCAAGTGGTGGGGAGTGGA...AAAGCAGTGTGGCAGACTGACCAGGCTGGGGAGGTTTGCCCCTGTTGATTTAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS CCA 90 bp TTGAGGAGCTGGTGTCTGTACTCCTGGGCTCTTCGGTTGGCCTCCTaGAGCTGTTGCTGCAGTAGCTCTCTTTCACTGCCTTCCTTCATT +
Preference number: 5 (lower is better)
Translates to: LRSWCLYSWALRLAS*SCCCSSSLSLPSFI
Trigger: AATGAAGGAAGGCAGTGAAAGAGAGCTACTGCAGCAACAGCTCCAGGAGGCCAACCGAAGAGCCCAGGAGTACAGACACCAGCTCCTCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp AGAGTTGTGGGGGAGGAGACTTTGAGCAGCAGGACGAAGAAAGGAAGATGTCTGCGTCTTGGCCTTTCCTaGCAGCTTCTAGCAGCCTCT +
Preference number: 5 (lower is better)
Translates to: RVVGEETLSSRTKKGRCLRLGLS*QLLAAS
Trigger: AGAGGCTGCTAGAAGCTGCAAGGAAAGGCCAAGACG...CAGACATCTTCCTTTCTTCGTCCTGCTGCTCAAAGTCTCCTCCCCCACAACTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
CDS-3UTR CAA 90 bp TCTACTTCCCGAGTGCTGGAACTCAAGGCATGTGTCACCACATCTGGCCCTCTTCCTCACTTCATCGTCTaGGCCTTTCCTTGCAGCTTC +
Preference number: 5 (lower is better)
Translates to: STSRVLELKACVTTSGPLPHFIV*AFPCSF
Trigger: GAAGCTGCAAGGAAAGGCCAAGACGATGAAGTGAGG...AAGAGGGCCAGATGTGGTGACACATGCCTTGAGTTCCAGCACTCGGGAAGTAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS CCA 90 bp AGAGGTGAAGATGAACGGAGCAGTCACAGTCACAGGGTTAGCCACTaGGTTGGCTCTCTCGTGGTTAGTGTTCACCTGATTCTGCATTGC +
Preference number: 5 (lower is better)
Translates to: RGEDERSSHSHRVSH*VGSLVVSVHLILHC
Trigger: GCAATGCAGAATCAGGTGAACACTAACCACGAGAGAGCCAACCCAGTGGCTAACCCTGTGACTGTGACTGCTCCGTTCATCTTCACCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp CCCTCAGATGCCCCTAAAGTGGCTCTGAGTTTTCCAGCTGCACACACAGCCTTCTTTCCTCAACCCTGTTaGTCATCTCTGCCATCCTTG +
Preference number: 5 (lower is better)
Translates to: PSDAPKVALSFPAAHTAFFPQPC*SSLPSL
Trigger: CAAGGATGGCAGAGATGACAAACAGGGTTGAGGAAA...GAAGGCTGTGTGTGCAGCTGGAAAACTCAGAGCCACTTTAGGGGCATCTGAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS TCA 90 bp TTTGCGTTCACATCTGCACCACTCCTAACAAGCAGTTCCACGATGTaGACATGTCCATCAGCTGCAGCCATATGCAAAGGGGTCCTGTCC +
Preference number: 5 (lower is better)
Translates to: FAFTSAPLLTSSSTM*TCPSAAAICKGVLS
Trigger: GGACAGGACCCCTTTGCATATGGCTGCAGCTGATGGACATGTTCACATCGTGGAACTGCTTGTTAGGAGTGGTGCAGATGTGAACGCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098873.11
ENSMUST00000107204.8
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS CCA 90 bp GTTACAATAAATGGCTGGCCAATGCCTCCAGCAGGGAGTGATGTTTaGATGTTACCCAGAGGGACTCCATCAGTCACGATGGTGATGACC +
Preference number: 5 (lower is better)
Translates to: VTINGWPMPPAGSDV*MLPRGTPSVTMVMT
Trigger: GGTCATCACCATCGTGACTGATGGAGTCCCTCTGGGTAACATCCAAACATCACTCCCTGCTGGAGGCATTGGCCAGCCATTTATTGTAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCCGTCTTGGCCTTTCCTaGCAGCTTCTAGCAGCCTCT +
Preference number: 5 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSRLGLS*QLLAAS
Trigger: AGAGGCTGCTAGAAGCTGCAAGGAAAGGCCAAGACG...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp TCTACTTCCCGAGTGCTGGAACTCAAGGCATGTGTCACCACATCTGGCCCTCTTCTAAATGAGCTGAGGTaGCTTTGGTGTTGGCTGAAG +
Preference number: 5 (lower is better)
Translates to: STSRVLELKACVTTSGPLLNELR*LWCWLK
Trigger: CTTCAGCCAACACCAAAGCAACCTCAGCTCATTTAG...AAGAGGGCCAGATGTGGTGACACATGCCTTGAGTTCCAGCACTCGGGAAGTAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp TCTACTTCCCGAGTGCTGGAACTCAAGGCATGTGTCACCACATCTGGCCCTCTTTTTCCTCAACCCTGTTaGTCATCTCTGCCATCCTTG +
Preference number: 5 (lower is better)
Translates to: STSRVLELKACVTTSGPLFPQPC*SSLPSL
Trigger: CAAGGATGGCAGAGATGACAAACAGGGTTGAGGAAA...AAGAGGGCCAGATGTGGTGACACATGCCTTGAGTTCCAGCACTCGGGAAGTAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp TCTTTTTGCCTATCCATTGAGCCATTTCTCCAGCCGCATCTTTTGTTTCTAAGAGGGGTCCTGTCCACTTaGGTCCGGGCATCCCTGCTA +
Preference number: 5 (lower is better)
Translates to: SFCLSIEPFLQPHLLFLRGVLST*VRASLL
Trigger: TAGCAGGGATGCCCGGACCAAAGTGGACAGGACCCC...TCTTAGAAACAAAAGATGCGGCTGGAGAAATGGCTCAATGGATAGGCAAAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS TCA 90 bp TTGCATAGTTACAATAAATGGCTGGCCAATGCCTCCAGCAGGGAGTaGTGTTTGGATGTTACCCAGAGGGACTCCATCAGTCACGATGGT +
Preference number: 5 (lower is better)
Translates to: LHSYNKWLANASSRE*CLDVTQRDSISHDG
Trigger: ACCATCGTGACTGATGGAGTCCCTCTGGGTAACATCCAAACATCACTCCCTGCTGGAGGCATTGGCCAGCCATTTATTGTAACTATGCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp GGATTACAGGCACGAGGCACAATGCTCAGGTGTCTAATTTTTGTGGTTTTTGAGCGTCTTGGCCTTTCCTaGCAGCTTCTAGCAGCCTCT +
Preference number: 5 (lower is better)
Translates to: GLQARGTMLRCLIFVVFERLGLS*QLLAAS
Trigger: AGAGGCTGCTAGAAGCTGCAAGGAAAGGCCAAGACG...CTCAAAAACCACAAAAATTAGACACCTGAGCATTGTGCCTCGTGCCTGTAATCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp CCCTCAGATGCCCCTAAAGTGGCTCTGAGTTTTCCAGCTGCACACACAGCCTTCACATCAGCTCCATATTaGATAAGTAACTCGACGACA +
Preference number: 5 (lower is better)
Translates to: PSDAPKVALSFPAAHTAFTSAPY*ISNSTT
Trigger: TGTCGTCGAGTTACTTATCAAATATGGAGCTGATGT...GAAGGCTGTGTGTGCAGCTGGAAAACTCAGAGCCACTTTAGGGGCATCTGAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTAGGGGTCCTGTCCACTTaGGTCCGGGCATCCCTGCTA +
Preference number: 5 (lower is better)
Translates to: EDREDHNFLLLTSLITCVGVLST*VRASLL
Trigger: TAGCAGGGATGCCCGGACCAAAGTGGACAGGACCCC...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp CCACAGACTAGAGATGACCAACTAATTATGTTCCAGTGCCTGGCAAAGCCTTCCTTTCCTCAACCCTGTTaGTCATCTCTGCCATCCTTG +
Preference number: 5 (lower is better)
Translates to: PQTRDDQLIMFQCLAKPSFPQPC*SSLPSL
Trigger: CAAGGATGGCAGAGATGACAAACAGGGTTGAGGAAA...GGAAGGCTTTGCCAGGCACTGGAACATAATTAGTTGGTCATCTCTAGTCTGTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp TCTACTTCCCGAGTGCTGGAACTCAAGGCATGTGTCACCACATCTGGCCCTCTTTATTGTTTTTCTCCATaGCTATGTCAAAGGCAGACT +
Preference number: 5 (lower is better)
Translates to: STSRVLELKACVTTSGPLYCFSP*LCQRQT
Trigger: AGTCTGCCTTTGACATAGCAATGGAGAAAAACAATA...AAGAGGGCCAGATGTGGTGACACATGCCTTGAGTTCCAGCACTCGGGAAGTAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTATCCACTCCCCACCACTaGCTGGGTCGAGGAGTCAAG +
Preference number: 5 (lower is better)
Translates to: EDREDHNFLLLTSLITCVSTPHH*LGRGVK
Trigger: CTTGACTCCTCGACCCAGCAAGTGGTGGGGAGTGGA...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS CCA 90 bp ACAGTTAGAACTTGCTGTCCATCTTGCATAGTTACAATAAATGGCTaGCCAATGCCTCCAGCAGGGAGTGATGTTTGGATGTTACCCAGA +
Preference number: 5 (lower is better)
Translates to: TVRTCCPSCIVTING*PMPPAGSDVWMLPR
Trigger: TCTGGGTAACATCCAAACATCACTCCCTGCTGGAGGCATTGGCCAGCCATTTATTGTAACTATGCAAGATGGACAGCAAGTTCTAACTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp GGATTACAGGCACGAGGCACAATGCTCAGGTGTCTAATTTTTGTGGTTTTTGAGCTAAATGAGCTGAGGTaGCTTTGGTGTTGGCTGAAG +
Preference number: 5 (lower is better)
Translates to: GLQARGTMLRCLIFVVFELNELR*LWCWLK
Trigger: CTTCAGCCAACACCAAAGCAACCTCAGCTCATTTAG...CTCAAAAACCACAAAAATTAGACACCTGAGCATTGTGCCTCGTGCCTGTAATCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp GAAGACAGAGAGGATCACAATTTCCTGCTATTAACAAGCCTAATTACTTGTGTACGTCTTGGCCTTTCCTaGCAGCTTCTAGCAGCCTCT +
Preference number: 5 (lower is better)
Translates to: EDREDHNFLLLTSLITCVRLGLS*QLLAAS
Trigger: AGAGGCTGCTAGAAGCTGCAAGGAAAGGCCAAGACG...TACACAAGTAATTAGGCTTGTTAATAGCAGGAAATTGTGATCCTCTCTGTCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp ACTTGTGTAGAGTTTAGGAATTATCTTCCTTCCCCTAACCCTAGAGAGGTTAAACTAAATGAGCTGAGGTaGCTTTGGTGTTGGCTGAAG +
Preference number: 5 (lower is better)
Translates to: TCVEFRNYLPSPNPREVKLNELR*LWCWLK
Trigger: CTTCAGCCAACACCAAAGCAACCTCAGCTCATTTAG...TTTAACCTCTCTAGGGTTAGGGGAAGGAAGATAATTCCTAAACTCTACACAAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp ATGTGCTCTAAGGATGTAAACAAAAGCCACCTACAAAGAAACCTGCTCCCTCTAACATCAGCTCCATATTaGATAAGTAACTCGACGACA +
Preference number: 5 (lower is better)
Translates to: MCSKDVNKSHLQRNLLPLTSAPY*ISNSTT
Trigger: TGTCGTCGAGTTACTTATCAAATATGGAGCTGATGT...TAGAGGGAGCAGGTTTCTTTGTAGGTGGCTTTTGTTTACATCCTTAGAGCACAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp GGATTACAGGCACGAGGCACAATGCTCAGGTGTCTAATTTTTGTGGTTTTTGAGAACTTGCTGTCCATCTaGCATAGTTACAATAAATGG +
Preference number: 5 (lower is better)
Translates to: GLQARGTMLRCLIFVVFENLLSI*HSYNKW
Trigger: CCATTTATTGTAACTATGCAAGATGGACAGCAAGTT...CTCAAAAACCACAAAAATTAGACACCTGAGCATTGTGCCTCGTGCCTGTAATCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp CCTGTAACTCACAATGGAGTTCAAGCTGGCTTTAAACTCGTAATCTTTCTGTTTACATCAGCTCCATATTaGATAAGTAACTCGACGACA +
Preference number: 5 (lower is better)
Translates to: PVTHNGVQAGFKLVIFLFTSAPY*ISNSTT
Trigger: TGTCGTCGAGTTACTTATCAAATATGGAGCTGATGT...AAACAGAAAGATTACGAGTTTAAAGCCAGCTTGAACTCCATTGTGAGTTACAGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp TCTTTTTGCCTATCCATTGAGCCATTTCTCCAGCCGCATCTTTTGTTTCTAAGATATTGTTTTTCTCCATaGCTATGTCAAAGGCAGACT +
Preference number: 5 (lower is better)
Translates to: SFCLSIEPFLQPHLLFLRYCFSP*LCQRQT
Trigger: AGTCTGCCTTTGACATAGCAATGGAGAAAAACAATA...TCTTAGAAACAAAAGATGCGGCTGGAGAAATGGCTCAATGGATAGGCAAAAAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp TCTGTAATTCCAGCATATGTGAGGCAGGAAGATTACGAGTCATCTTTAATTACAACATCAGCTCCATATTaGATAAGTAACTCGACGACA +
Preference number: 5 (lower is better)
Translates to: SVIPAYVRQEDYESSLITTSAPY*ISNSTT
Trigger: TGTCGTCGAGTTACTTATCAAATATGGAGCTGATGT...TGTAATTAAAGATGACTCGTAATCTTCCTGCCTCACATATGCTGGAATTACAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
CDS-3UTR CAA 90 bp TTTTCTAACTCAGAGACCTCATGCTCAAAAGTGACTTGGAACAATGAAACTTGGAACTTGCTGTCCATCTaGCATAGTTACAATAAATGG +
Preference number: 5 (lower is better)
Translates to: FSNSETSCSKVTWNNETWNLLSI*HSYNKW
Trigger: CCATTTATTGTAACTATGCAAGATGGACAGCAAGTT...CCAAGTTTCATTGTTCCAAGTCACTTTTGAGCATGAGGTCTCTGAGTTAGAAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS-3UTR CAA 90 bp GTCATCTTTAATTACATTCAAAATCTGAGATTGCCCTGGGCTACTTTAGATACTTATTGTTTTTCTCCATaGCTATGTCAAAGGCAGACT +
Preference number: 5 (lower is better)
Translates to: VIFNYIQNLRLPWATLDTYCFSP*LCQRQT
Trigger: AGTCTGCCTTTGACATAGCAATGGAGAAAAACAATA...AGTATCTAAAGTAGCCCAGGGCAATCTCAGATTTTGAATGTAATTAAAGATGAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107204.8
CDS CCA 72 bp AGAGGGACTCCATCAGTCACGATGGTGATGACCCTCTaGCCTCCACTCCCCACCACTTGCTGGGTCGAGGAG +
Preference number: 6 (lower is better)
Translates to: RGTPSVTMVMTL*PPLPTTCWVEE
Trigger: CTCCTCGACCCAGCAAGTGGTGGGGAGTGGAGGCCAGAGGGTCATCACCATCGTGACTGATGGAGTCCCTCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS CCA 72 bp CGATACTGCTCGGCCTCCTGCTCTTTCTTGAGGAGCTaGTGTCTGTACTCCTGGGCTCTTCGGTTGGCCTCC +
Preference number: 6 (lower is better)
Translates to: RYCSASCSFLRS*CLYSWALRLAS
Trigger: GGAGGCCAACCGAAGAGCCCAGGAGTACAGACACCAGCTCCTCAAGAAAGAGCAGGAGGCCGAGCAGTATCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000098873.11
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS CAA 72 bp TCAGCTGCAGCCATATGCAAAGGGGTCCTGTCCACTTaGGTCCGGGCATCCCTGCTAACGCCAGCTCGAAGG +
Preference number: 6 (lower is better)
Translates to: SAAAICKGVLST*VRASLLTPARR
Trigger: CCTTCGAGCTGGCGTTAGCAGGGATGCCCGGACCAAAGTGGACAGGACCCCTTTGCATATGGCTGCAGCTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098873.11
ENSMUST00000107204.8
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS CAA 90 bp ACATGTCCATCAGCTGCAGCCATATGCAAAGGGGTCCTGTCCACTTaGGTCCGGGCATCCCTGCTAACGCCAGCTCGAAGGAGCACTTCT +
Preference number: 6 (lower is better)
Translates to: TCPSAAAICKGVLST*VRASLLTPARRSTS
Trigger: AGAAGTGCTCCTTCGAGCTGGCGTTAGCAGGGATGCCCGGACCAAAGTGGACAGGACCCCTTTGCATATGGCTGCAGCTGATGGACATGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098873.11
ENSMUST00000107204.8
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS GCA 72 bp TGTTCCGAGCCAGTCTGTGGTGAATGGAGCCCCATTTaGCATCAGTGTCCTCACTTCATCGTCTTGGCCTTT +
Preference number: 6 (lower is better)
Translates to: CSEPVCGEWSPI*HQCPHFIVLAF
Trigger: AAAGGCCAAGACGATGAAGTGAGGACACTGATGGCAAATGGGGCTCCATTCACCACAGACTGGCTCGGAACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098873.11
ENSMUST00000107204.8
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS TCA 72 bp ACATCTGCACCACTCCTAACAAGCAGTTCCACGATGTaGACATGTCCATCAGCTGCAGCCATATGCAAAGGG +
Preference number: 6 (lower is better)
Translates to: TSAPLLTSSSTM*TCPSAAAICKG
Trigger: CCCTTTGCATATGGCTGCAGCTGATGGACATGTTCACATCGTGGAACTGCTTGTTAGGAGTGGTGCAGATGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000098873.11
ENSMUST00000107204.8
ENSMUST00000107209.8
ENSMUST00000136139.8
CDS GCA 72 bp AACAAGCAGTTCCACGATGTGAACATGTCCATCAGCTaGAGCCATATGCAAAGGGGTCCTGTCCACTTTGGT +
Preference number: 6 (lower is better)
Translates to: NKQFHDVNMSIS*SHMQRGPVHFG
Trigger: ACCAAAGTGGACAGGACCCCTTTGCATATGGCTGCAGCTGATGGACATGTTCACATCGTGGAACTGCTTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000098873.11
ENSMUST00000107204.8
ENSMUST00000107209.8
ENSMUST00000136139.8