Pregenerated sensors for GABPA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000008976Ensembl transcript IDs: ENSMUST00000009120.8, ENSMUST00000114184.8
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACTCTCAGTGGAGCCAGAGTGAGAAAGCTTGGGTCTCCTTCCGTGTaGGGGGAGCATGGAGGATGCAGGAGGGGTAGAGAACAACCACCT | + |
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Preference number: 1 (lower is better) Translates to: TLSGARVRKLGSPSV*GEHGGCRRGREQPP Trigger: AGGTGGTTGTTCTCTACCCCTCCTGCATCCTCCATGCTCCCCCCACACGGAAGGAGACCCAAGCTTTCTCACTCTGGCTCCACTGAGAGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009120.8 |
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| 3UTR GCA 90 bp | GGAGGTAAGAAACCCTCTGTCTTCTCCCTAACACTCGGTCCTGGCTaGATCATCAGGCTGCACTTTCTCTCCTCAAACTCTTCTAAAGCC | + |
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Preference number: 1 (lower is better) Translates to: GGKKPSVFSLTLGPG*IIRLHFLSSNSSKA Trigger: GGCTTTAGAAGAGTTTGAGGAGAGAAAGTGCAGCCTGATGATGCAGCCAGGACCGAGTGTTAGGGAGAAGACAGAGGGTTTCTTACCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009120.8 |
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| 3UTR-3UTR GCA 90 bp | AGCGGAGAGGAAACAGCTCCACGCCCGCAGTGGCTACACCAGGCTGTTTCCTGGAACCTGCTCTCACATTaGAGGCATCGTGGTGATCCT | + |
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Preference number: 2 (lower is better) Translates to: SGEETAPRPQWLHQAVSWNLLSH*RHRGDP Trigger: AGGATCACCACGATGCCTGCAATGTGAGAGCAGGTT...CCAGGAAACAGCCTGGTGTAGCCACTGCGGGCGTGGAGCTGTTTCCTCTCCGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| 3UTR-3UTR GCA 90 bp | TGTAAAGCAGCGGAGAGGAAACAGCTCCACGCCCGCAGTGGCTACACCAGGCTGAACCTGCTCTCACATTaGAGGCATCGTGGTGATCCT | + |
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Preference number: 2 (lower is better) Translates to: CKAAERKQLHARSGYTRLNLLSH*RHRGDP Trigger: AGGATCACCACGATGCCTGCAATGTGAGAGCAGGTT...CAGCCTGGTGTAGCCACTGCGGGCGTGGAGCTGTTTCCTCTCCGCTGCTTTACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| 3UTR-3UTR CCA 90 bp | GGAGCTCAGTCACAGCCAGCACTTCTGCCTAACTGGCTGCACCTTCCAATGCCACACCAGGCTGTTTCCTaGAAATGCTTCCCTCCTTTC | + |
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Preference number: 2 (lower is better) Translates to: GAQSQPALLPNWLHLPMPHQAVS*KCFPPF Trigger: GAAAGGAGGGAAGCATTTCCAGGAAACAGCCTGGTG...TGGCATTGGAAGGTGCAGCCAGTTAGGCAGAAGTGCTGGCTGTGACTGAGCTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009120.8 |
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| 3UTR-3UTR CCA 90 bp | GGAGCTCAGTCACAGCCAGCACTTCTGCCTAACTGGCTGCACCTTCCAATGCCATCTTTGAACTCTCAGTaGAGCCAGAGTGAGAAAGCT | + |
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Preference number: 2 (lower is better) Translates to: GAQSQPALLPNWLHLPMPSLNSQ*SQSEKA Trigger: AGCTTTCTCACTCTGGCTCCACTGAGAGTTCAAAGA...TGGCATTGGAAGGTGCAGCCAGTTAGGCAGAAGTGCTGGCTGTGACTGAGCTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009120.8 |
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| 3UTR-3UTR TCA 90 bp | ATAGCAAACTGGGGCCTCAATAAGAACAACACATCTTTGAACTCTCAGTGGAGCCACACATGCTTTAGCTaGGAATGTCCTTTTTCAGGC | + |
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Preference number: 2 (lower is better) Translates to: IANWGLNKNNTSLNSQWSHTCFS*ECPFSG Trigger: GCCTGAAAAAGGACATTCTCAGCTAAAGCATGTGTG...GCTCCACTGAGAGTTCAAAGATGTGTTGTTCTTATTGAGGCCCCAGTTTGCTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009120.8 |
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| 3UTR-3UTR GCA 90 bp | AACTGGGGCCTCAATAAGAACAACACATCTTTGAACTCTCAGTGGAGCCAGAGTTTCAACACTTTCTTCTaGCAGTTAACTTCCTCTCTT | + |
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Preference number: 2 (lower is better) Translates to: NWGLNKNNTSLNSQWSQSFNTFF*QLTSSL Trigger: AAGAGAGGAAGTTAACTGGCAGAAGAAAGTGTTGAA...ACTCTGGCTCCACTGAGAGTTCAAAGATGTGTTGTTCTTATTGAGGCCCCAGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009120.8 |
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| 3UTR CCA 72 bp | GGAGCCAGAGTGAGAAAGCTTGGGTCTCCTTCCGTGTaGGGGGAGCATGGAGGATGCAGGAGGGGTAGAGAA | + |
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Preference number: 3 (lower is better) Translates to: GARVRKLGSPSV*GEHGGCRRGRE Trigger: TTCTCTACCCCTCCTGCATCCTCCATGCTCCCCCCACACGGAAGGAGACCCAAGCTTTCTCACTCTGGCTCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000009120.8 |
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| 3UTR CCA 72 bp | GCTCCACGCCCGCAGTGGCTACACCAGGCTGTTTCCTaGAAATGCTTCCCTCCTTTCATCTTCAGACGCTAC | + |
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Preference number: 3 (lower is better) Translates to: APRPQWLHQAVS*KCFPPFIFRRY Trigger: GTAGCGTCTGAAGATGAAAGGAGGGAAGCATTTCCAGGAAACAGCCTGGTGTAGCCACTGCGGGCGTGGAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| 3UTR GCA 72 bp | CGCCCGCAGTGGCTACACCAGGCTGTTTCCTGGAAATaGTTCCCTCCTTTCATCTTCAGACGCTACTGGCTA | + |
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Preference number: 3 (lower is better) Translates to: RPQWLHQAVSWK*FPPFIFRRYWL Trigger: TAGCCAGTAGCGTCTGAAGATGAAAGGAGGGAAGCATTTCCAGGAAACAGCCTGGTGTAGCCACTGCGGGCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| 3UTR GCA 72 bp | ACTCATCATGAGGAGCTCAGTCACAGCCAGCACTTCTaGCTAACTGGCTGCACCTTCCAATGCCAGCACCAA | + |
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Preference number: 3 (lower is better) Translates to: THHEELSHSQHF*LTGCTFQCQHQ Trigger: TTGGTGCTGGCATTGGAAGGTGCAGCCAGTTAGGCAGAAGTGCTGGCTGTGACTGAGCTCCTCATGATGAGT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009120.8 |
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| 3UTR GCA 72 bp | AAACCCTCTGTCTTCTCCCTAACACTCGGTCCTGGCTaGATCATCAGGCTGCACTTTCTCTCCTCAAACTCT | + |
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Preference number: 3 (lower is better) Translates to: KPSVFSLTLGPG*IIRLHFLSSNS Trigger: AGAGTTTGAGGAGAGAAAGTGCAGCCTGATGATGCAGCCAGGACCGAGTGTTAGGGAGAAGACAGAGGGTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009120.8 |
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| 3UTR CCA 72 bp | GGCCTCAATAAGAACAACACATCTTTGAACTCTCAGTaGAGCCAGAGTGAGAAAGCTTGGGTCTCCTTCCGT | + |
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Preference number: 3 (lower is better) Translates to: GLNKNNTSLNSQ*SQSEKAWVSFR Trigger: ACGGAAGGAGACCCAAGCTTTCTCACTCTGGCTCCACTGAGAGTTCAAAGATGTGTTGTTCTTATTGAGGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000009120.8 |
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| 3UTR TCA 72 bp | ATAAATGTTCCTTTCCTTAAAACACATTCCTCCGAATaGTACACAAAGTCTGTCCTCTTGGCTAAAGCTTTA | + |
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Preference number: 3 (lower is better) Translates to: INVPFLKTHSSE*YTKSVLLAKAL Trigger: TAAAGCTTTAGCCAAGAGGACAGACTTTGTGTATCATTCGGAGGAATGTGTTTTAAGGAAAGGAACATTTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009120.8 |
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| CDS-3UTR CCA 90 bp | GCAGCGGAGAGGAAACAGCTCCACGCCCGCAGTGGCTACACCAGGCTGTTTCCTCTGCCTGTAGAGAGGTaGCTGCCAGTGCTACTGCCG | + |
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Preference number: 4 (lower is better) Translates to: AAERKQLHARSGYTRLFPLPVER*LPVLLP Trigger: CGGCAGTAGCACTGGCAGCCACCTCTCTACAGGCAG...AGGAAACAGCCTGGTGTAGCCACTGCGGGCGTGGAGCTGTTTCCTCTCCGCTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR CCA 90 bp | AGCGGAGAGGAAACAGCTCCACGCCCGCAGTGGCTACACCAGGCTGTTTCCTGGCTGCCTGTAGAGAGGTaGCTGCCAGTGCTACTGCCG | + |
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Preference number: 4 (lower is better) Translates to: SGEETAPRPQWLHQAVSWLPVER*LPVLLP Trigger: CGGCAGTAGCACTGGCAGCCACCTCTCTACAGGCAG...CCAGGAAACAGCCTGGTGTAGCCACTGCGGGCGTGGAGCTGTTTCCTCTCCGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR GCA 90 bp | TGTAAAGCAGCGGAGAGGAAACAGCTCCACGCCCGCAGTGGCTACACCAGGCTGAGAGGTGGCTGCCAGTaGTACTGCCGTGACTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: CKAAERKQLHARSGYTRLRGGCQ*YCRDWL Trigger: CAGCCAGTCACGGCAGTAGCACTGGCAGCCACCTCT...CAGCCTGGTGTAGCCACTGCGGGCGTGGAGCTGTTTCCTCTCCGCTGCTTTACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR GCA 90 bp | GCCCGCAGTGGCTACACCAGGCTGTTTCCTGGAAATGCTTCCCTCCTTTCATCTAGAGGTGGCTGCCAGTaGTACTGCCGTGACTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: ARSGYTRLFPGNASLLSSRGGCQ*YCRDWL Trigger: CAGCCAGTCACGGCAGTAGCACTGGCAGCCACCTCT...AGATGAAAGGAGGGAAGCATTTCCAGGAAACAGCCTGGTGTAGCCACTGCGGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR TCA 90 bp | AGGAAACAGCTCCACGCCCGCAGTGGCTACACCAGGCTGTTTCCTGGAAATGCTACTTCTGTCTTCTCCTaGAATCCTTGGGGACCGTTG | + |
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Preference number: 4 (lower is better) Translates to: RKQLHARSGYTRLFPGNATSVFS*NPWGPL Trigger: CAACGGTCCCCAAGGATTTCAGGAGAAGACAGAAGT...AGCATTTCCAGGAAACAGCCTGGTGTAGCCACTGCGGGCGTGGAGCTGTTTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR GCA 90 bp | GCAGCGGAGAGGAAACAGCTCCACGCCCGCAGTGGCTACACCAGGCTGTTTCCTAGGTTTGTTCCACAATaGTTTCTTCTGTGCACTCTG | + |
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Preference number: 4 (lower is better) Translates to: AAERKQLHARSGYTRLFPRFVPQ*FLLCTL Trigger: CAGAGTGCACAGAAGAAAGCATTGTGGAACAAACCT...AGGAAACAGCCTGGTGTAGCCACTGCGGGCGTGGAGCTGTTTCCTCTCCGCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR GCA 90 bp | AGCGGAGAGGAAACAGCTCCACGCCCGCAGTGGCTACACCAGGCTGTTTCCTGGACGGTTCAGTTCTGCTaGACTGTATCCAATAAGAGT | + |
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Preference number: 4 (lower is better) Translates to: SGEETAPRPQWLHQAVSWTVQFC*TVSNKS Trigger: ACTCTTATTGGATACAGTGCAGCAGAACTGAACCGT...CCAGGAAACAGCCTGGTGTAGCCACTGCGGGCGTGGAGCTGTTTCCTCTCCGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR TCA 90 bp | AGGAAACAGCTCCACGCCCGCAGTGGCTACACCAGGCTGTTTCCTGGAAATGCTCGGTCTGGATCCAGCTaGATATCTTGCAGGCAAATT | + |
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Preference number: 4 (lower is better) Translates to: RKQLHARSGYTRLFPGNARSGSS*ISCRQI Trigger: AATTTGCCTGCAAGATATTCAGCTGGATCCAGACCG...AGCATTTCCAGGAAACAGCCTGGTGTAGCCACTGCGGGCGTGGAGCTGTTTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR GCA 90 bp | TGTAAAGCAGCGGAGAGGAAACAGCTCCACGCCCGCAGTGGCTACACCAGGCTGACGGTTCAGTTCTGCTaGACTGTATCCAATAAGAGT | + |
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Preference number: 4 (lower is better) Translates to: CKAAERKQLHARSGYTRLTVQFC*TVSNKS Trigger: ACTCTTATTGGATACAGTGCAGCAGAACTGAACCGT...CAGCCTGGTGTAGCCACTGCGGGCGTGGAGCTGTTTCCTCTCCGCTGCTTTACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR TCA 90 bp | CCGCAGTGGCTACACCAGGCTGTTTCCTGGAAATGCTTCCCTCCTTTCATCTTCACTTCTGTCTTCTCCTaGAATCCTTGGGGACCGTTG | + |
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Preference number: 4 (lower is better) Translates to: PQWLHQAVSWKCFPPFIFTSVFS*NPWGPL Trigger: CAACGGTCCCCAAGGATTTCAGGAGAAGACAGAAGT...GAAGATGAAAGGAGGGAAGCATTTCCAGGAAACAGCCTGGTGTAGCCACTGCGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR GCA 90 bp | GCCCGCAGTGGCTACACCAGGCTGTTTCCTGGAAATGCTTCCCTCCTTTCATCTGAGGCTGGAATAATCTaGACAGGCTGGTCAATGGTA | + |
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Preference number: 4 (lower is better) Translates to: ARSGYTRLFPGNASLLSSEAGII*TGWSMV Trigger: TACCATTGACCAGCCTGTGCAGATTATTCCAGCCTC...AGATGAAAGGAGGGAAGCATTTCCAGGAAACAGCCTGGTGTAGCCACTGCGGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR TCA 90 bp | CCGCAGTGGCTACACCAGGCTGTTTCCTGGAAATGCTTCCCTCCTTTCATCTTCCGGTCTGGATCCAGCTaGATATCTTGCAGGCAAATT | + |
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Preference number: 4 (lower is better) Translates to: PQWLHQAVSWKCFPPFIFRSGSS*ISCRQI Trigger: AATTTGCCTGCAAGATATTCAGCTGGATCCAGACCG...GAAGATGAAAGGAGGGAAGCATTTCCAGGAAACAGCCTGGTGTAGCCACTGCGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR GCA 90 bp | GCCCGCAGTGGCTACACCAGGCTGTTTCCTGGAAATGCTTCCCTCCTTTCATCTCAGACGGTTCAGTTCTaGTGCACTGTATCCAATAAG | + |
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Preference number: 4 (lower is better) Translates to: ARSGYTRLFPGNASLLSSQTVQF*CTVSNK Trigger: CTTATTGGATACAGTGCAGCAGAACTGAACCGTCTG...AGATGAAAGGAGGGAAGCATTTCCAGGAAACAGCCTGGTGTAGCCACTGCGGGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR CCA 90 bp | TGTAAAGCAGCGGAGAGGAAACAGCTCCACGCCCGCAGTGGCTACACCAGGCTGAAGAATGTTCAACTTTaGCTCCATTCCTTGGTAAGA | + |
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Preference number: 4 (lower is better) Translates to: CKAAERKQLHARSGYTRLKNVQL*LHSLVR Trigger: TCTTACCAAGGAATGGAGCCAAAGTTGAACATTCTT...CAGCCTGGTGTAGCCACTGCGGGCGTGGAGCTGTTTCCTCTCCGCTGCTTTACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR GCA 90 bp | GTGGCTACACCAGGCTGTTTCCTGGAAATGCTTCCCTCCTTTCATCTTCAGACGGAGGCTGGAATAATCTaGACAGGCTGGTCAATGGTA | + |
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Preference number: 4 (lower is better) Translates to: VATPGCFLEMLPSFHLQTEAGII*TGWSMV Trigger: TACCATTGACCAGCCTGTGCAGATTATTCCAGCCTC...CGTCTGAAGATGAAAGGAGGGAAGCATTTCCAGGAAACAGCCTGGTGTAGCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR GCA 90 bp | CCGCAGTGGCTACACCAGGCTGTTTCCTGGAAATGCTTCCCTCCTTTCATCTTCAGGTTTGTTCCACAATaGTTTCTTCTGTGCACTCTG | + |
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Preference number: 4 (lower is better) Translates to: PQWLHQAVSWKCFPPFIFRFVPQ*FLLCTL Trigger: CAGAGTGCACAGAAGAAAGCATTGTGGAACAAACCT...GAAGATGAAAGGAGGGAAGCATTTCCAGGAAACAGCCTGGTGTAGCCACTGCGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR GCA 90 bp | CCGCAGTGGCTACACCAGGCTGTTTCCTGGAAATGCTTCCCTCCTTTCATCTTCCCGTTGCACTTTAGCTaGTTTTGCACTGCTGTTTAT | + |
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Preference number: 4 (lower is better) Translates to: PQWLHQAVSWKCFPPFIFPLHFS*FCTAVY Trigger: ATAAACAGCAGTGCAAAAGCAGCTAAAGTGCAACGG...GAAGATGAAAGGAGGGAAGCATTTCCAGGAAACAGCCTGGTGTAGCCACTGCGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR GCA 90 bp | GTGGCTACACCAGGCTGTTTCCTGGAAATGCTTCCCTCCTTTCATCTTCAGACGCAGACGGTTCAGTTCTaGTGCACTGTATCCAATAAG | + |
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Preference number: 4 (lower is better) Translates to: VATPGCFLEMLPSFHLQTQTVQF*CTVSNK Trigger: CTTATTGGATACAGTGCAGCAGAACTGAACCGTCTG...CGTCTGAAGATGAAAGGAGGGAAGCATTTCCAGGAAACAGCCTGGTGTAGCCAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR CCA 90 bp | GGAGCTCAGTCACAGCCAGCACTTCTGCCTAACTGGCTGCACCTTCCAATGCCATTCATCTGTTGCTCTTaGCTGGCCAAAACATATTTT | + |
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Preference number: 4 (lower is better) Translates to: GAQSQPALLPNWLHLPMPFICCS*LAKTYF Trigger: AAAATATGTTTTGGCCAGCCAAGAGCAACAGATGAA...TGGCATTGGAAGGTGCAGCCAGTTAGGCAGAAGTGCTGGCTGTGACTGAGCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009120.8 |
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| CDS-3UTR CCA 90 bp | CCGCAGTGGCTACACCAGGCTGTTTCCTGGAAATGCTTCCCTCCTTTCATCTTCAAGAATGTTCAACTTTaGCTCCATTCCTTGGTAAGA | + |
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Preference number: 4 (lower is better) Translates to: PQWLHQAVSWKCFPPFIFKNVQL*LHSLVR Trigger: TCTTACCAAGGAATGGAGCCAAAGTTGAACATTCTT...GAAGATGAAAGGAGGGAAGCATTTCCAGGAAACAGCCTGGTGTAGCCACTGCGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR CCA 90 bp | CCGCAGTGGCTACACCAGGCTGTTTCCTGGAAATGCTTCCCTCCTTTCATCTTCTTCATCTGTTGCTCTTaGCTGGCCAAAACATATTTT | + |
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Preference number: 4 (lower is better) Translates to: PQWLHQAVSWKCFPPFIFFICCS*LAKTYF Trigger: AAAATATGTTTTGGCCAGCCAAGAGCAACAGATGAA...GAAGATGAAAGGAGGGAAGCATTTCCAGGAAACAGCCTGGTGTAGCCACTGCGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR CCA 90 bp | ATAGCAAACTGGGGCCTCAATAAGAACAACACATCTTTGAACTCTCAGTGGAGCATAATCTGCACAGGCTaGTCAATGGTAACTATCTCA | + |
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Preference number: 4 (lower is better) Translates to: IANWGLNKNNTSLNSQWSIICTG*SMVTIS Trigger: TGAGATAGTTACCATTGACCAGCCTGTGCAGATTAT...GCTCCACTGAGAGTTCAAAGATGTGTTGTTCTTATTGAGGCCCCAGTTTGCTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000009120.8 |
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| CDS-3UTR CAA 90 bp | AGCGGAGAGGAAACAGCTCCACGCCCGCAGTGGCTACACCAGGCTGTTTCCTGGAGCTGGGGTATAGGTTaGTTCCACAATGCTTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: SGEETAPRPQWLHQAVSWSWGIG*FHNAFF Trigger: GAAGAAAGCATTGTGGAACAAACCTATACCCCAGCT...CCAGGAAACAGCCTGGTGTAGCCACTGCGGGCGTGGAGCTGTTTCCTCTCCGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR CAA 90 bp | GCAGCGGAGAGGAAACAGCTCCACGCCCGCAGTGGCTACACCAGGCTGTTTCCTCTTTGGCTCCATTCCTaGGTAAGAAATTACCTGTAC | + |
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Preference number: 5 (lower is better) Translates to: AAERKQLHARSGYTRLFPLWLHS*VRNYLY Trigger: GTACAGGTAATTTCTTACCAAGGAATGGAGCCAAAG...AGGAAACAGCCTGGTGTAGCCACTGCGGGCGTGGAGCTGTTTCCTCTCCGCTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR CAA 90 bp | AGCGGAGAGGAAACAGCTCCACGCCCGCAGTGGCTACACCAGGCTGTTTCCTGGAAGAACACTGCAGTCTaGGTTCTAGTAGTTTCTTTA | + |
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Preference number: 5 (lower is better) Translates to: SGEETAPRPQWLHQAVSWKNTAV*VLVVSL Trigger: TAAAGAAACTACTAGAACCAAGACTGCAGTGTTCTT...CCAGGAAACAGCCTGGTGTAGCCACTGCGGGCGTGGAGCTGTTTCCTCTCCGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR CAA 90 bp | GCAGCGGAGAGGAAACAGCTCCACGCCCGCAGTGGCTACACCAGGCTGTTTCCTAAGAACACTGCAGTCTaGGTTCTAGTAGTTTCTTTA | + |
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Preference number: 5 (lower is better) Translates to: AAERKQLHARSGYTRLFPKNTAV*VLVVSL Trigger: TAAAGAAACTACTAGAACCAAGACTGCAGTGTTCTT...AGGAAACAGCCTGGTGTAGCCACTGCGGGCGTGGAGCTGTTTCCTCTCCGCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR CAA 90 bp | GCCCGCAGTGGCTACACCAGGCTGTTTCCTGGAAATGCTTCCCTCCTTTCATCTAGGCTTGTTCTTACGTaGTCCCCATTTTTGCGCAAC | + |
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Preference number: 5 (lower is better) Translates to: ARSGYTRLFPGNASLLSSRLVLT*SPFLRN Trigger: GTTGCGCAAAAATGGGGACAACGTAAGAACAAGCCT...AGATGAAAGGAGGGAAGCATTTCCAGGAAACAGCCTGGTGTAGCCACTGCGGGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR CAA 90 bp | GCCCGCAGTGGCTACACCAGGCTGTTTCCTGGAAATGCTTCCCTCCTTTCATCTAGCTGGGGTATAGGTTaGTTCCACAATGCTTTCTTC | + |
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Preference number: 5 (lower is better) Translates to: ARSGYTRLFPGNASLLSSSWGIG*FHNAFF Trigger: GAAGAAAGCATTGTGGAACAAACCTATACCCCAGCT...AGATGAAAGGAGGGAAGCATTTCCAGGAAACAGCCTGGTGTAGCCACTGCGGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR CAA 90 bp | AGGAAACAGCTCCACGCCCGCAGTGGCTACACCAGGCTGTTTCCTGGAAATGCTATCTGTTTTCACTCCTaGATCAAACAAGCTTCGGTC | + |
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Preference number: 5 (lower is better) Translates to: RKQLHARSGYTRLFPGNAICFHS*IKQASV Trigger: GACCGAAGCTTGTTTGATCAAGGAGTGAAAACAGAT...AGCATTTCCAGGAAACAGCCTGGTGTAGCCACTGCGGGCGTGGAGCTGTTTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR CAA 90 bp | GTGGCTACACCAGGCTGTTTCCTGGAAATGCTTCCCTCCTTTCATCTTCAGACGCTTTGGCTCCATTCCTaGGTAAGAAATTACCTGTAC | + |
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Preference number: 5 (lower is better) Translates to: VATPGCFLEMLPSFHLQTLWLHS*VRNYLY Trigger: GTACAGGTAATTTCTTACCAAGGAATGGAGCCAAAG...CGTCTGAAGATGAAAGGAGGGAAGCATTTCCAGGAAACAGCCTGGTGTAGCCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000009120.8 ENSMUST00000114184.8 |
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| CDS-3UTR CAA 90 bp | AACTGGGGCCTCAATAAGAACAACACATCTTTGAACTCTCAGTGGAGCCAGAGTAGGCTTGTTCTTACGTaGTCCCCATTTTTGCGCAAC | + |
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Preference number: 5 (lower is better) Translates to: NWGLNKNNTSLNSQWSQSRLVLT*SPFLRN Trigger: GTTGCGCAAAAATGGGGACAACGTAAGAACAAGCCT...ACTCTGGCTCCACTGAGAGTTCAAAGATGTGTTGTTCTTATTGAGGCCCCAGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000009120.8 |
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