RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GABBR2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039809

Ensembl transcript IDs: ENSMUST00000107749.4, ENSMUST00000205643.2

Found 289 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTGCCCTTCCTGCTGACTCCCTGTTCCAGGGAGGCGGAAGTGGGCTaGGCCAGCTGCTGGGGACCTGGTGGCCCTGCTCACCTTCTCCCC +
Preference number: 1 (lower is better)
Translates to: LPFLLTPCSREAEVG*ASCWGPGGPAHLLP
Trigger: GGGGAGAAGGTGAGCAGGGCCACCAGGTCCCCAGCAGCTGGCCCAGCCCACTTCCGCCTCCCTGGAACAGGGAGTCAGCAGGAAGGGCAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR CCA 90 bp TGGCCCTGCTCACCTTCTCCCCCAGAGTGGAGAAGGGCTGGTGTGTaGGGGCGGGCACCACCGATGACGTGTGTGCAGAGTGCAGAGGGC +
Preference number: 1 (lower is better)
Translates to: WPCSPSPPEWRRAGV*GRAPPMTCVQSAEG
Trigger: GCCCTCTGCACTCTGCACACACGTCATCGGTGGTGCCCGCCCCCACACACCAGCCCTTCTCCACTCTGGGGGAGAAGGTGAGCAGGGCCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR GCA 90 bp GGCTGGTGTGTGGGGGCGGGCACCACCGATGACGTGTGTGCAGAGTaGAGAGGGCCATTTCTGCAGAGCCCTTGCTCTGGCCACTTGGCG +
Preference number: 1 (lower is better)
Translates to: GWCVGAGTTDDVCAE*RGPFLQSPCSGHLA
Trigger: CGCCAAGTGGCCAGAGCAAGGGCTCTGCAGAAATGGCCCTCTGCACTCTGCACACACGTCATCGGTGGTGCCCGCCCCCACACACCAGCC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR TCA 90 bp CCCCAGAGTGGAGAAGGGCTGGTGTGTGGGGGCGGGCACCACCGATaGCGTGTGTGCAGAGTGCAGAGGGCCATTTCTGCAGAGCCCTTG +
Preference number: 1 (lower is better)
Translates to: PQSGEGLVCGGGHHR*RVCRVQRAISAEPL
Trigger: CAAGGGCTCTGCAGAAATGGCCCTCTGCACTCTGCACACACGTCATCGGTGGTGCCCGCCCCCACACACCAGCCCTTCTCCACTCTGGGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR GCA 90 bp CATCTCTCTTCTGATGGATGTTCCCTGGGAGCATGCGCAGCTGCCTaGTCTGGTCCCCCAGCCCCAGGGCTGTGCCCGTCTGCCCTTCCT +
Preference number: 1 (lower is better)
Translates to: HLSSDGCSLGACAAA*SGPPAPGLCPSALP
Trigger: AGGAAGGGCAGACGGGCACAGCCCTGGGGCTGGGGGACCAGAGCAGGCAGCTGCGCATGCTCCCAGGGAACATCCATCAGAAGAGAGATG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR GCA 90 bp ATACAGCCGACACAGTGGGTGCATGACAGACTGTCGGTTGCATCCTaGAGAGCACGTCTGCAGTGCGGTGCCCTGAATCCCCACAGTCCC +
Preference number: 1 (lower is better)
Translates to: IQPTQWVHDRLSVAS*RARLQCGALNPHSP
Trigger: GGGACTGTGGGGATTCAGGGCACCGCACTGCAGACGTGCTCTGCAGGATGCAACCGACAGTCTGTCATGCACCCACTGTGTCGGCTGTAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR CCA 90 bp TGGGCTGTCCTGTTCCTAGGTAGAGGGCCTTGCAGGAAGTTTCTCTaGGCCGCACTGTACCCCCAGCTTGTGGGAGGGCTGAAGGTCATG +
Preference number: 1 (lower is better)
Translates to: WAVLFLGRGPCRKFL*AALYPQLVGGLKVM
Trigger: CATGACCTTCAGCCCTCCCACAAGCTGGGGGTACAGTGCGGCCCAGAGAAACTTCCTGCAAGGCCCTCTACCTAGGAACAGGACAGCCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR TCA 90 bp CCTCGTGAGAGTAAGACCGTCGTAGATAAGGCTCGAGATCCGTGCTaGGTCCCTCTCTGCCTGAGCGCCATTCCAGCAGTCTGGAGAGGC +
Preference number: 1 (lower is better)
Translates to: PRESKTVVDKARDPC*VPLCLSAIPAVWRG
Trigger: GCCTCTCCAGACTGCTGGAATGGCGCTCAGGCAGAGAGGGACTCAGCACGGATCTCGAGCCTTATCTACGACGGTCTTACTCTCACGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR GCA 90 bp GTGCATGACAGACTGTCGGTTGCATCCTGCAGAGCACGTCTGCAGTaGGGTGCCCTGAATCCCCACAGTCCCCAGAACGGGTGTTATTGT +
Preference number: 1 (lower is better)
Translates to: VHDRLSVASCRARLQ*GALNPHSPQNGCYC
Trigger: ACAATAACACCCGTTCTGGGGACTGTGGGGATTCAGGGCACCGCACTGCAGACGTGCTCTGCAGGATGCAACCGACAGTCTGTCATGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR TCA 90 bp GACTGTCGGTTGCATCCTGCAGAGCACGTCTGCAGTGCGGTGCCCTaGATCCCCACAGTCCCCAGAACGGGTGTTATTGTGTTAATGTGT +
Preference number: 1 (lower is better)
Translates to: DCRLHPAEHVCSAVP*IPTVPRTGVIVLMC
Trigger: ACACATTAACACAATAACACCCGTTCTGGGGACTGTGGGGATTCAGGGCACCGCACTGCAGACGTGCTCTGCAGGATGCAACCGACAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR TCA 90 bp GGAAGTTTCTCTGGGCCGCACTGTACCCCCAGCTTGTGGGAGGGCTaGAGGTCATGGTCGTTACTAATACCTCACAGGTCAGAGCTGCTT +
Preference number: 1 (lower is better)
Translates to: GSFSGPHCTPSLWEG*RSWSLLIPHRSELL
Trigger: AAGCAGCTCTGACCTGTGAGGTATTAGTAACGACCATGACCTTCAGCCCTCCCACAAGCTGGGGGTACAGTGCGGCCCAGAGAAACTTCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR GCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGTGCACTAGCGTCACTGGAAGATaGCCTTGGGCGGAAGCCTCTAGGAAATGGACCGTGTGTTTGCTG +
Preference number: 1 (lower is better)
Translates to: CVCVCVCVCTSVTGR*PWAEASRKWTVCLL
Trigger: CAGCAAACACACGGTCCATTTCCTAGAGGCTTCCGCCCAAGGGCATCTTCCAGTGACGCTAGTGCACACACACACACACACACACACACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR TCA 90 bp AACCCTAAATTTGAACACAAGGATACAGCCGACACAGTGGGTGCATaGCAGACTGTCGGTTGCATCCTGCAGAGCACGTCTGCAGTGCGG +
Preference number: 1 (lower is better)
Translates to: NPKFEHKDTADTVGA*QTVGCILQSTSAVR
Trigger: CCGCACTGCAGACGTGCTCTGCAGGATGCAACCGACAGTCTGTCATGCACCCACTGTGTCGGCTGTATCCTTGTGTTCAAATTTAGGGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGTGCACTAGCGTCACTGGAAGATGCCCTTaGGCGGAAGCCTCTAGGAAATGGACCGTGTGTTTGCTGCATATA +
Preference number: 1 (lower is better)
Translates to: CVCVCVCTSVTGRCP*AEASRKWTVCLLHI
Trigger: TATATGCAGCAAACACACGGTCCATTTCCTAGAGGCTTCCGCCCAAGGGCATCTTCCAGTGACGCTAGTGCACACACACACACACACACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR CCA 90 bp TTACCAGGAACCCTAAATTTGAACACAAGGATACAGCCGACACAGTaGGTGCATGACAGACTGTCGGTTGCATCCTGCAGAGCACGTCTG +
Preference number: 1 (lower is better)
Translates to: LPGTLNLNTRIQPTQ*VHDRLSVASCRARL
Trigger: CAGACGTGCTCTGCAGGATGCAACCGACAGTCTGTCATGCACCCACTGTGTCGGCTGTATCCTTGTGTTCAAATTTAGGGTTCCTGGTAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR GCA 90 bp GCTGCCTTTAGGATTTCTTTAGGGAGTAAGCAAACCACGCATTTGTaGAGACGCCCCTGGACGGTGCCATTCAGGCTTTTAGCAAAGAAT +
Preference number: 1 (lower is better)
Translates to: AAFRISLGSKQTTHL*RRPWTVPFRLLAKN
Trigger: ATTCTTTGCTAAAAGCCTGAATGGCACCGTCCAGGGGCGTCTGCACAAATGCGTGGTTTGCTTACTCCCTAAAGAAATCCTAAAGGCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR CCA 90 bp ACTAGCGTCACTGGAAGATGCCCTTGGGCGGAAGCCTCTAGGAAATaGACCGTGTGTTTGCTGCATATAAAAGAACAGAACCAGGAGATA +
Preference number: 1 (lower is better)
Translates to: TSVTGRCPWAEASRK*TVCLLHIKEQNQEI
Trigger: TATCTCCTGGTTCTGTTCTTTTATATGCAGCAAACACACGGTCCATTTCCTAGAGGCTTCCGCCCAAGGGCATCTTCCAGTGACGCTAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR CCA 90 bp ATTTCTTTAGGGAGTAAGCAAACCACGCATTTGTGCAGACGCCCCTaGACGGTGCCATTCAGGCTTTTAGCAAAGAATGAACCTATCAAG +
Preference number: 1 (lower is better)
Translates to: ISLGSKQTTHLCRRP*TVPFRLLAKNEPIK
Trigger: CTTGATAGGTTCATTCTTTGCTAAAAGCCTGAATGGCACCGTCCAGGGGCGTCTGCACAAATGCGTGGTTTGCTTACTCCCTAAAGAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR CCA 90 bp CTGAATCCCCACAGTCCCCAGAACGGGTGTTATTGTGTTAATGTGTaGCATTTATCAGAGAGTAACAAACATCTCTCTTCTGATGGATGT +
Preference number: 1 (lower is better)
Translates to: LNPHSPQNGCYCVNV*HLSESNKHLSSDGC
Trigger: ACATCCATCAGAAGAGAGATGTTTGTTACTCTCTGATAAATGCCACACATTAACACAATAACACCCGTTCTGGGGACTGTGGGGATTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR TCA 90 bp GTGCACAATCTTTCTTTATCGTGTTTTCTGGGAGTAGACATTCCATaGTTAGCTCGGATGGTTCCCCTTATTACCAGGAACCCTAAATTT +
Preference number: 1 (lower is better)
Translates to: VHNLSLSCFLGVDIP*LARMVPLITRNPKF
Trigger: AAATTTAGGGTTCCTGGTAATAAGGGGAACCATCCGAGCTAATCATGGAATGTCTACTCCCAGAAAACACGATAAAGAAAGATTGTGCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR GCA 90 bp GCCCGTCTGCCCTTCCTGCTGACTCCCTGTTCCAGGGAGGCGGAAGTGGGCTGGCTTGGCCCAGCATGGTaGTGTCCCGGTGAGGCCCGG +
Preference number: 2 (lower is better)
Translates to: ARLPFLLTPCSREAEVGWLGPAW*CPGEAR
Trigger: CCGGGCCTCACCGGGACAGCACCATGCTGGGCCAAG...CCAGCCCACTTCCGCCTCCCTGGAACAGGGAGTCAGCAGGAAGGGCAGACGGGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR CCA 90 bp GGGCTGTGCCCGTCTGCCCTTCCTGCTGACTCCCTGTTCCAGGGAGGCGGAAGTAGAAGGGCTGGTGTGTaGGGGCGGGCACCACCGATG +
Preference number: 2 (lower is better)
Translates to: GLCPSALPADSLFQGGGSRRAGV*GRAPPM
Trigger: CATCGGTGGTGCCCGCCCCCACACACCAGCCCTTCT...ACTTCCGCCTCCCTGGAACAGGGAGTCAGCAGGAAGGGCAGACGGGCACAGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR CCA 90 bp ACCACGCATTTGTGCAGACGCCCCTGGACGGTGCCATTCAGGCTTTTAGCAAAGGGCTGGGCCAGCTGCTaGGGACCTGGTGGCCCTGCT +
Preference number: 2 (lower is better)
Translates to: TTHLCRRPWTVPFRLLAKGWASC*GPGGPA
Trigger: AGCAGGGCCACCAGGTCCCCAGCAGCTGGCCCAGCC...CTTTGCTAAAAGCCTGAATGGCACCGTCCAGGGGCGTCTGCACAAATGCGTGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR CCA 90 bp ACCACGCATTTGTGCAGACGCCCCTGGACGGTGCCATTCAGGCTTTTAGCAAAGGCAGAGCCCTTGCTCTaGCCACTTGGCGAGGATAGC +
Preference number: 2 (lower is better)
Translates to: TTHLCRRPWTVPFRLLAKAEPLL*PLGEDS
Trigger: GCTATCCTCGCCAAGTGGCCAGAGCAAGGGCTCTGC...CTTTGCTAAAAGCCTGAATGGCACCGTCCAGGGGCGTCTGCACAAATGCGTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR CCA 90 bp GTGACTTGCCCAAGGTCACGGAGAGAGTCTGAGGGGACTGAGGACTCAAATCCAAATCCCAGCAGCCCTTaGGCCCCCATGGGAGAGGTT +
Preference number: 2 (lower is better)
Translates to: VTCPRSRRESEGTEDSNPNPSSP*APMGEV
Trigger: AACCTCTCCCATGGGGGCCCAAGGGCTGCTGGGATT...TGGATTTGAGTCCTCAGTCCCCTCAGACTCTCTCCGTGACCTTGGGCAAGTCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR TCA 90 bp TCTTTAGGGAGTAAGCAAACCACGCATTTGTGCAGACGCCCCTGGACGGTGCCAGACACAGTGGGTGCATaGCAGACTGTCGGTTGCATC +
Preference number: 2 (lower is better)
Translates to: SLGSKQTTHLCRRPWTVPDTVGA*QTVGCI
Trigger: GATGCAACCGACAGTCTGTCATGCACCCACTGTGTC...TGGCACCGTCCAGGGGCGTCTGCACAAATGCGTGGTTTGCTTACTCCCTAAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR GCA 90 bp GCTGCCTTTAGGATTTCTTTAGGGAGTAAGCAAACCACGCATTTGTGCAGACGCGGAGAGGCAGCATGGTaGCCAGCTTCTCGCCGCCGT +
Preference number: 2 (lower is better)
Translates to: AAFRISLGSKQTTHLCRRGEAAW*PASRRR
Trigger: ACGGCGGCGAGAAGCTGGGCACCATGCTGCCTCTCC...GCGTCTGCACAAATGCGTGGTTTGCTTACTCCCTAAAGAAATCCTAAAGGCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR CCA 90 bp GCTGCCTTTAGGATTTCTTTAGGGAGTAAGCAAACCACGCATTTGTGCAGACGCCAGTGGCAGGCGCCTTaGCCCAGCATGGTGCTGTCC +
Preference number: 2 (lower is better)
Translates to: AAFRISLGSKQTTHLCRRQWQAP*PSMVLS
Trigger: GGACAGCACCATGCTGGGCCAAGGCGCCTGCCACTG...GCGTCTGCACAAATGCGTGGTTTGCTTACTCCCTAAAGAAATCCTAAAGGCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR CCA 90 bp ACCTACAGGATCAGTAGACAGAGATGTATCTTGTGGGTTAACCTAGAAGACAGACCAGGGAGGCGGAAGTaGGCTGGGCCAGCTGCTGGG +
Preference number: 2 (lower is better)
Translates to: TYRISRQRCILWVNLEDRPGRRK*AGPAAG
Trigger: CCCAGCAGCTGGCCCAGCCCACTTCCGCCTCCCTGG...TCTGTCTTCTAGGTTAACCCACAAGATACATCTCTGTCTACTGATCCTGTAGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR CCA 90 bp TCTTTAGGGAGTAAGCAAACCACGCATTTGTGCAGACGCCCCTGGACGGTGCCAATACAGCCGACACAGTaGGTGCATGACAGACTGTCG +
Preference number: 2 (lower is better)
Translates to: SLGSKQTTHLCRRPWTVPIQPTQ*VHDRLS
Trigger: CGACAGTCTGTCATGCACCCACTGTGTCGGCTGTAT...TGGCACCGTCCAGGGGCGTCTGCACAAATGCGTGGTTTGCTTACTCCCTAAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR TCA 90 bp TCAGAGCTGCTTCACAGTGGAAAGCTATCCTGGATGAATGAGATCAAGTGTCCATGCAGTGCGGTGCCCTaGATCCCCACAGTCCCCAGA +
Preference number: 2 (lower is better)
Translates to: SELLHSGKLSWMNEIKCPCSAVP*IPTVPR
Trigger: TCTGGGGACTGTGGGGATTCAGGGCACCGCACTGCA...TGGACACTTGATCTCATTCATCCAGGATAGCTTTCCACTGTGAAGCAGCTCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR CCA 90 bp GTCGTTACTAATACCTCACAGGTCAGAGCTGCTTCACAGTGGAAAGCTATCCTGGCCATTCCAGCAGTCTaGAGAGGCAGCATGGTGCCC +
Preference number: 2 (lower is better)
Translates to: VVTNTSQVRAASQWKAILAIPAV*RGSMVP
Trigger: GGGCACCATGCTGCCTCTCCAGACTGCTGGAATGGC...CAGGATAGCTTTCCACTGTGAAGCAGCTCTGACCTGTGAGGTATTAGTAACGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR CCA 90 bp ATCGATACCATGCAGTGGGGCAAGAGAAACGCCTCATTTTTACACTTGATTCTGCTGCTGGGGACCTGGTaGCCCTGCTCACCTTCTCCC +
Preference number: 2 (lower is better)
Translates to: IDTMQWGKRNASFLHLILLLGTW*PCSPSP
Trigger: GGGAGAAGGTGAGCAGGGCCACCAGGTCCCCAGCAG...CAGAATCAAGTGTAAAAATGAGGCGTTTCTCTTGCCCCACTGCATGGTATCGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR CCA 90 bp GCTGCCTTTAGGATTTCTTTAGGGAGTAAGCAAACCACGCATTTGTGCAGACGCCGGGCACTCATAGGTTaGGGCTGGAAGGGCACTGGA +
Preference number: 2 (lower is better)
Translates to: AAFRISLGSKQTTHLCRRRALIG*GWKGTG
Trigger: TCCAGTGCCCTTCCAGCCCCAACCTATGAGTGCCCG...GCGTCTGCACAAATGCGTGGTTTGCTTACTCCCTAAAGAAATCCTAAAGGCAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR CCA 90 bp TCAGAGCTGCTTCACAGTGGAAAGCTATCCTGGATGAATGAGATCAAGTGTCCACCTTCTCCCCCAGAGTaGAGAAGGGCTGGTGTGTGG +
Preference number: 2 (lower is better)
Translates to: SELLHSGKLSWMNEIKCPPSPPE*RRAGVW
Trigger: CCACACACCAGCCCTTCTCCACTCTGGGGGAGAAGG...TGGACACTTGATCTCATTCATCCAGGATAGCTTTCCACTGTGAAGCAGCTCTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR TCA 90 bp GCTGCCTTTAGGATTTCTTTAGGGAGTAAGCAAACCACGCATTTGTGCAGACGCTCAGAGAGACACTGGTaGCTTGCCCAAGGTCACGGA +
Preference number: 2 (lower is better)
Translates to: AAFRISLGSKQTTHLCRRSERHW*LAQGHG
Trigger: TCCGTGACCTTGGGCAAGTCACCAGTGTCTCTCTGA...GCGTCTGCACAAATGCGTGGTTTGCTTACTCCCTAAAGAAATCCTAAAGGCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR GCA 90 bp GTCGTTACTAATACCTCACAGGTCAGAGCTGCTTCACAGTGGAAAGCTATCCTGAGCCGACACAGTGGGTaGATGACAGACTGTCGGTTG +
Preference number: 2 (lower is better)
Translates to: VVTNTSQVRAASQWKAILSRHSG*MTDCRL
Trigger: CAACCGACAGTCTGTCATGCACCCACTGTGTCGGCT...CAGGATAGCTTTCCACTGTGAAGCAGCTCTGACCTGTGAGGTATTAGTAACGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR CCA 90 bp TCTGGGAGTAGACATTCCATGATTAGCTCGGATGGTTCCCCTTATTACCAGGAACTGATGGATGTTCCCTaGGAGCATGCGCAGCTGCCT +
Preference number: 2 (lower is better)
Translates to: SGSRHSMISSDGSPYYQELMDVP*EHAQLP
Trigger: AGGCAGCTGCGCATGCTCCCAGGGAACATCCATCAG...TTCCTGGTAATAAGGGGAACCATCCGAGCTAATCATGGAATGTCTACTCCCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR CAA 90 bp GAAGCTGCCTTTAGGATTTCTTTAGGGAGTAAGCAAACCACGCATTaGTGCAGACGCCCCTGGACGGTGCCATTCAGGCTTTTAGCAAAG +
Preference number: 2 (lower is better)
Translates to: EAAFRISLGSKQTTH*CRRPWTVPFRLLAK
Trigger: CTTTGCTAAAAGCCTGAATGGCACCGTCCAGGGGCGTCTGCACAAATGCGTGGTTTGCTTACTCCCTAAAGAAATCCTAAAGGCAGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR TCA 90 bp ATCGATACCATGCAGTGGGGCAAGAGAAACGCCTCATTTTTACACTTGATTCTGAGAAGAGCCTCCCTCTaGCTGGGCTGTCCTGTTCCT +
Preference number: 2 (lower is better)
Translates to: IDTMQWGKRNASFLHLILRRASL*LGCPVP
Trigger: AGGAACAGGACAGCCCAGTCAGAGGGAGGCTCTTCT...CAGAATCAAGTGTAAAAATGAGGCGTTTCTCTTGCCCCACTGCATGGTATCGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR CCA 90 bp AGACAGAGCACAGTTCGGAGTCACAAGGGATTACAGACACACGCTCACCTCCGAGCCCCTGATTCACTTTaGTCAAAAACAAAGTCAGTG +
Preference number: 2 (lower is better)
Translates to: RQSTVRSHKGLQTHAHLRAPDSL*SKTKSV
Trigger: CACTGACTTTGTTTTTGACCAAAGTGAATCAGGGGC...TCGGAGGTGAGCGTGTGTCTGTAATCCCTTGTGACTCCGAACTGTGCTCTGTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR TCA 90 bp ACCTACAGGATCAGTAGACAGAGATGTATCTTGTGGGTTAACCTAGAAGACAGAAGGATAGCTGGAGTCTaGGGCCTCTCTCCTTTGTCT +
Preference number: 2 (lower is better)
Translates to: TYRISRQRCILWVNLEDRRIAGV*GLSPLS
Trigger: AGACAAAGGAGAGAGGCCTCAGACTCCAGCTATCCT...TCTGTCTTCTAGGTTAACCCACAAGATACATCTCTGTCTACTGATCCTGTAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR TCA 90 bp ATCGATACCATGCAGTGGGGCAAGAGAAACGCCTCATTTTTACACTTGATTCTGCAAACATCTCTCTTCTaGTGGATGTTCCCTGGGAGC +
Preference number: 2 (lower is better)
Translates to: IDTMQWGKRNASFLHLILQTSLF*WMFPGS
Trigger: GCTCCCAGGGAACATCCATCAGAAGAGAGATGTTTG...CAGAATCAAGTGTAAAAATGAGGCGTTTCTCTTGCCCCACTGCATGGTATCGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR TCA 90 bp ATCTTGTGGGTTAACCTAGAAGACAGAGCACAGTTCGGAGTCACAAGGGATTACTCAGGAACACAGAGATaGCTTTTAGCAGAATGCCCC +
Preference number: 2 (lower is better)
Translates to: ILWVNLEDRAQFGVTRDYSGTQR*LLAECP
Trigger: GGGGCATTCTGCTAAAAGTCATCTCTGTGTTCCTGA...GTAATCCCTTGTGACTCCGAACTGTGCTCTGTCTTCTAGGTTAACCCACAAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR CAA 90 bp CTGGAGTCTGAGGCCTCTCTCCTTTGTCTAGAGTTTGATTTGTTTTaGCAAGTTTCTGACATCCCAACTCCTCTTTGTTTGCAGACGCCA +
Preference number: 2 (lower is better)
Translates to: LESEASLLCLEFDLF*QVSDIPTPLCLQTP
Trigger: TGGCGTCTGCAAACAAAGAGGAGTTGGGATGTCAGAAACTTGCAAAAACAAATCAAACTCTAGACAAAGGAGAGAGGCCTCAGACTCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR TCA 90 bp ATCGATACCATGCAGTGGGGCAAGAGAAACGCCTCATTTTTACACTTGATTCTGGCTATCCTGGATGAATaGGATCAAGTGTCCATCCTC +
Preference number: 2 (lower is better)
Translates to: IDTMQWGKRNASFLHLILAILDE*DQVSIL
Trigger: GAGGATGGACACTTGATCTCATTCATCCAGGATAGC...CAGAATCAAGTGTAAAAATGAGGCGTTTCTCTTGCCCCACTGCATGGTATCGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR TCA 90 bp CAAGAGAAACGCCTCATTTTTACACTTGATTCTGCCAGTTCCGGTCTAATTGAAGGAGTAGACATTCCATaGTTAGCTCGGATGGTTCCC +
Preference number: 2 (lower is better)
Translates to: QEKRLIFTLDSASSGLIEGVDIP*LARMVP
Trigger: GGGAACCATCCGAGCTAATCATGGAATGTCTACTCC...TTCAATTAGACCGGAACTGGCAGAATCAAGTGTAAAAATGAGGCGTTTCTCTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR CCA 90 bp CAAGAGAAACGCCTCATTTTTACACTTGATTCTGCCAGTTCCGGTCTAATTGAAGAAGCCTCTAGGAAATaGACCGTGTGTTTGCTGCAT +
Preference number: 2 (lower is better)
Translates to: QEKRLIFTLDSASSGLIEEASRK*TVCLLH
Trigger: ATGCAGCAAACACACGGTCCATTTCCTAGAGGCTTC...TTCAATTAGACCGGAACTGGCAGAATCAAGTGTAAAAATGAGGCGTTTCTCTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR CCA 90 bp TCGGAGTCACAAGGGATTACAGACACACGCTCACCTCCGACAATCCAATACTTTTTTTTCCTGCTATGCTaGAGTAATATTTCTACAGGT +
Preference number: 2 (lower is better)
Translates to: SESQGITDTRSPPTIQYFFFLLC*SNISTG
Trigger: ACCTGTAGAAATATTACTCCAGCATAGCAGGAAAAA...AAAGTATTGGATTGTCGGAGGTGAGCGTGTGTCTGTAATCCCTTGTGACTCCGA
42% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR CCA 90 bp CAAGAGAAACGCCTCATTTTTACACTTGATTCTGCCAGTTCCGGTCTAATTGAAAAAGCAAGGGAATACTaGTTAACACACACAGTGAGT +
Preference number: 2 (lower is better)
Translates to: QEKRLIFTLDSASSGLIEKAREY*LTHTVS
Trigger: ACTCACTGTGTGTGTTAACCAGTATTCCCTTGCTTT...TTCAATTAGACCGGAACTGGCAGAATCAAGTGTAAAAATGAGGCGTTTCTCTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR GCA 72 bp GTGGGGGCGGGCACCACCGATGACGTGTGTGCAGAGTaGAGAGGGCCATTTCTGCAGAGCCCTTGCTCTGGC +
Preference number: 3 (lower is better)
Translates to: VGAGTTDDVCAE*RGPFLQSPCSG
Trigger: GCCAGAGCAAGGGCTCTGCAGAAATGGCCCTCTGCACTCTGCACACACGTCATCGGTGGTGCCCGCCCCCAC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR CAA 90 bp GGGGCTGGAAGGGCACTGGAGGGCTACCTTCTGGAAGCCAGGGAGCCCTGGGCCATGACAGACTGTCGGTaGCATCCTGCAGAGCACGTC +
Preference number: 3 (lower is better)
Translates to: GAGRALEGYLLEAREPWAMTDCR*HPAEHV
Trigger: GACGTGCTCTGCAGGATGCAACCGACAGTCTGTCAT...GGCCCAGGGCTCCCTGGCTTCCAGAAGGTAGCCCTCCAGTGCCCTTCCAGCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR GCA 72 bp AGACTGTCGGTTGCATCCTGCAGAGCACGTCTGCAGTaGGGTGCCCTGAATCCCCACAGTCCCCAGAACGGG +
Preference number: 3 (lower is better)
Translates to: RLSVASCRARLQ*GALNPHSPQNG
Trigger: CCCGTTCTGGGGACTGTGGGGATTCAGGGCACCGCACTGCAGACGTGCTCTGCAGGATGCAACCGACAGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR GCA 72 bp GTCGGTTGCATCCTGCAGAGCACGTCTGCAGTGCGGTaGCCTGAATCCCCACAGTCCCCAGAACGGGTGTTA +
Preference number: 3 (lower is better)
Translates to: VGCILQSTSAVR*PESPQSPERVL
Trigger: TAACACCCGTTCTGGGGACTGTGGGGATTCAGGGCACCGCACTGCAGACGTGCTCTGCAGGATGCAACCGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR TCA 72 bp ATAAGGCTCGAGATCCGTGCTGAGTCCCTCTCTGCCTaGGCGCCATTCCAGCAGTCTGGAGAGGCAGCATGG +
Preference number: 3 (lower is better)
Translates to: IRLEIRAESLSA*APFQQSGEAAW
Trigger: CCATGCTGCCTCTCCAGACTGCTGGAATGGCGCTCAGGCAGAGAGGGACTCAGCACGGATCTCGAGCCTTAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR GCA 72 bp ACACAGTGGGTGCATGACAGACTGTCGGTTGCATCCTaGAGAGCACGTCTGCAGTGCGGTGCCCTGAATCCC +
Preference number: 3 (lower is better)
Translates to: TQWVHDRLSVAS*RARLQCGALNP
Trigger: GGGATTCAGGGCACCGCACTGCAGACGTGCTCTGCAGGATGCAACCGACAGTCTGTCATGCACCCACTGTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR GCA 72 bp TCTGACTGGGCTGTCCTGTTCCTAGGTAGAGGGCCTTaGAGGAAGTTTCTCTGGGCCGCACTGTACCCCCAG +
Preference number: 3 (lower is better)
Translates to: SDWAVLFLGRGP*RKFLWAALYPQ
Trigger: CTGGGGGTACAGTGCGGCCCAGAGAAACTTCCTGCAAGGCCCTCTACCTAGGAACAGGACAGCCCAGTCAGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR CCA 72 bp AGAGTGCAGAGGGCCATTTCTGCAGAGCCCTTGCTCTaGCCACTTGGCGAGGATAGCTGGAGTCTGAGGCCT +
Preference number: 3 (lower is better)
Translates to: RVQRAISAEPLL*PLGEDSWSLRP
Trigger: AGGCCTCAGACTCCAGCTATCCTCGCCAAGTGGCCAGAGCAAGGGCTCTGCAGAAATGGCCCTCTGCACTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR TCA 72 bp AGTAAGACCGTCGTAGATAAGGCTCGAGATCCGTGCTaGGTCCCTCTCTGCCTGAGCGCCATTCCAGCAGTC +
Preference number: 3 (lower is better)
Translates to: SKTVVDKARDPC*VPLCLSAIPAV
Trigger: GACTGCTGGAATGGCGCTCAGGCAGAGAGGGACTCAGCACGGATCTCGAGCCTTATCTACGACGGTCTTACT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR CCA 72 bp ACCTATCAAGGACTGTCAGAAGAGCCTCCCTCTGACTaGGCTGTCCTGTTCCTAGGTAGAGGGCCTTGCAGG +
Preference number: 3 (lower is better)
Translates to: TYQGLSEEPPSD*AVLFLGRGPCR
Trigger: CCTGCAAGGCCCTCTACCTAGGAACAGGACAGCCCAGTCAGAGGGAGGCTCTTCTGACAGTCCTTGATAGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR CAA 90 bp TCAGAGCTGCTTCACAGTGGAAAGCTATCCTGGATGAATGAGATCAAGTGTCCACCAGTGGCAGGCGCCTaGGCCCAGCATGGTGCTGTC +
Preference number: 3 (lower is better)
Translates to: SELLHSGKLSWMNEIKCPPVAGA*AQHGAV
Trigger: GACAGCACCATGCTGGGCCAAGGCGCCTGCCACTGG...TGGACACTTGATCTCATTCATCCAGGATAGCTTTCCACTGTGAAGCAGCTCTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR TCA 72 bp GAGAGTCTGAGGGGACTGAGGACTCAAATCCAGGTCTaGCTCCCAGGCCGGTGCTCTTTGGGGTTCAATTTC +
Preference number: 3 (lower is better)
Translates to: ESLRGLRTQIQV*LPGRCSLGFNF
Trigger: GAAATTGAACCCCAAAGAGCACCGGCCTGGGAGTCAGACCTGGATTTGAGTCCTCAGTCCCCTCAGACTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR CCA 72 bp AGAGTAACAAACATCTCTCTTCTGATGGATGTTCCCTaGGAGCATGCGCAGCTGCCTGCTCTGGTCCCCCAG +
Preference number: 3 (lower is better)
Translates to: RVTNISLLMDVP*EHAQLPALVPQ
Trigger: CTGGGGGACCAGAGCAGGCAGCTGCGCATGCTCCCAGGGAACATCCATCAGAAGAGAGATGTTTGTTACTCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR TCA 72 bp TTTGAACACAAGGATACAGCCGACACAGTGGGTGCATaGCAGACTGTCGGTTGCATCCTGCAGAGCACGTCT +
Preference number: 3 (lower is better)
Translates to: FEHKDTADTVGA*QTVGCILQSTS
Trigger: AGACGTGCTCTGCAGGATGCAACCGACAGTCTGTCATGCACCCACTGTGTCGGCTGTATCCTTGTGTTCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR CAA 90 bp TCTGGGAGTAGACATTCCATGATTAGCTCGGATGGTTCCCCTTATTACCAGGAACCTTGCTCTGGCCACTaGGCGAGGATAGCTGGAGTC +
Preference number: 3 (lower is better)
Translates to: SGSRHSMISSDGSPYYQEPCSGH*ARIAGV
Trigger: GACTCCAGCTATCCTCGCCAAGTGGCCAGAGCAAGG...TTCCTGGTAATAAGGGGAACCATCCGAGCTAATCATGGAATGTCTACTCCCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR CAA 90 bp AGACTGTCGGTTGCATCCTGCAGAGCACGTCTGCAGTGCGGTGCCCTGAATCCCGAGTTTGATTTGTTTTaGCAAGTTTCTGACATCCCA +
Preference number: 3 (lower is better)
Translates to: RLSVASCRARLQCGALNPEFDLF*QVSDIP
Trigger: TGGGATGTCAGAAACTTGCAAAAACAAATCAAACTC...GGGATTCAGGGCACCGCACTGCAGACGTGCTCTGCAGGATGCAACCGACAGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR TCA 72 bp CCCCTGGACGGTGCCATTCAGGCTTTTAGCAAAGAATaGACCTATCAAGGACTGTCAGAAGAGCCTCCCTCT +
Preference number: 3 (lower is better)
Translates to: PLDGAIQAFSKE*TYQGLSEEPPS
Trigger: AGAGGGAGGCTCTTCTGACAGTCCTTGATAGGTTCATTCTTTGCTAAAAGCCTGAATGGCACCGTCCAGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR CCA 72 bp GGGAGTAAGCAAACCACGCATTTGTGCAGACGCCCCTaGACGGTGCCATTCAGGCTTTTAGCAAAGAATGAA +
Preference number: 3 (lower is better)
Translates to: GSKQTTHLCRRP*TVPFRLLAKNE
Trigger: TTCATTCTTTGCTAAAAGCCTGAATGGCACCGTCCAGGGGCGTCTGCACAAATGCGTGGTTTGCTTACTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR TCA 72 bp GGTCAGAGCTGCTTCACAGTGGAAAGCTATCCTGGATaGATGAGATCAAGTGTCCATCCTCAGAGTGACCCT +
Preference number: 3 (lower is better)
Translates to: GQSCFTVESYPG*MRSSVHPQSDP
Trigger: AGGGTCACTCTGAGGATGGACACTTGATCTCATTCATCCAGGATAGCTTTCCACTGTGAAGCAGCTCTGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR GCA 72 bp AGGATTTCTTTAGGGAGTAAGCAAACCACGCATTTGTaGAGACGCCCCTGGACGGTGCCATTCAGGCTTTTA +
Preference number: 3 (lower is better)
Translates to: RISLGSKQTTHL*RRPWTVPFRLL
Trigger: TAAAAGCCTGAATGGCACCGTCCAGGGGCGTCTGCACAAATGCGTGGTTTGCTTACTCCCTAAAGAAATCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR CCA 72 bp ACCCTAAATTTGAACACAAGGATACAGCCGACACAGTaGGTGCATGACAGACTGTCGGTTGCATCCTGCAGA +
Preference number: 3 (lower is better)
Translates to: TLNLNTRIQPTQ*VHDRLSVASCR
Trigger: TCTGCAGGATGCAACCGACAGTCTGTCATGCACCCACTGTGTCGGCTGTATCCTTGTGTTCAAATTTAGGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR CAA 90 bp ATCTTGTGGGTTAACCTAGAAGACAGAGCACAGTTCGGAGTCACAAGGGATTACCCAGGAACCCTAAATTaGAACACAAGGATACAGCCG +
Preference number: 3 (lower is better)
Translates to: ILWVNLEDRAQFGVTRDYPGTLN*NTRIQP
Trigger: CGGCTGTATCCTTGTGTTCAAATTTAGGGTTCCTGG...GTAATCCCTTGTGACTCCGAACTGTGCTCTGTCTTCTAGGTTAACCCACAAGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR-3UTR CAA 90 bp ATCTTGTGGGTTAACCTAGAAGACAGAGCACAGTTCGGAGTCACAAGGGATTACGAGAAGGACATCAACTaGACCTGTGATGTGTTGACA +
Preference number: 3 (lower is better)
Translates to: ILWVNLEDRAQFGVTRDYEKDIN*TCDVLT
Trigger: TGTCAACACATCACAGGTCAAGTTGATGTCCTTCTC...GTAATCCCTTGTGACTCCGAACTGTGCTCTGTCTTCTAGGTTAACCCACAAGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR GCA 72 bp TGTGTTCCTGACTGCAGTGGTCTGGAAAGAGATTATTaGCTGCCCGTTGAAGCTGCCTTTAGGATTTCTTTA +
Preference number: 3 (lower is better)
Translates to: CVPDCSGLERDY*LPVEAAFRISL
Trigger: TAAAGAAATCCTAAAGGCAGCTTCAACGGGCAGGCAATAATCTCTTTCCAGACCACTGCAGTCAGGAACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR TCA 72 bp AAAAGCAAGGGAATACTGGTTAACACACACAGTGAGTaGCAACATGGAGTTTGGGTGCCTAAACAGAGAAGG +
Preference number: 3 (lower is better)
Translates to: KSKGILVNTHSE*QHGVWVPKQRR
Trigger: CCTTCTCTGTTTAGGCACCCAAACTCCATGTTGTCACTCACTGTGTGTGTTAACCAGTATTCCCTTGCTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR TCA 72 bp CTTTCTTTATCGTGTTTTCTGGGAGTAGACATTCCATaGTTAGCTCGGATGGTTCCCCTTATTACCAGGAAC +
Preference number: 3 (lower is better)
Translates to: LSLSCFLGVDIP*LARMVPLITRN
Trigger: GTTCCTGGTAATAAGGGGAACCATCCGAGCTAATCATGGAATGTCTACTCCCAGAAAACACGATAAAGAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR CCA 72 bp CACAGTCCCCAGAACGGGTGTTATTGTGTTAATGTGTaGCATTTATCAGAGAGTAACAAACATCTCTCTTCT +
Preference number: 3 (lower is better)
Translates to: HSPQNGCYCVNV*HLSESNKHLSS
Trigger: AGAAGAGAGATGTTTGTTACTCTCTGATAAATGCCACACATTAACACAATAACACCCGTTCTGGGGACTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR CAA 72 bp CTTCTCGCCGCCGTCAGCGTGCCAGTGGCAGGCGCCTaGGCCCAGCATGGTGCTGTCCCGGTGAGGCCCGGC +
Preference number: 4 (lower is better)
Translates to: LLAAVSVPVAGA*AQHGAVPVRPG
Trigger: GCCGGGCCTCACCGGGACAGCACCATGCTGGGCCAAGGCGCCTGCCACTGGCACGCTGACGGCGGCGAGAAG
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR GCA 90 bp GGGGCTGGAAGGGCACTGGAGGGCTACCTTCTGGAAGCCAGGGAGCCCTGGGCCGCACGCCGCGCCCGATaGTGCCCTTGGCCACCTCCT +
Preference number: 4 (lower is better)
Translates to: GAGRALEGYLLEAREPWAARRAR*CPWPPP
Trigger: AGGAGGTGGCCAAGGGCAGCATCGGGCGCGGCGTGC...GGCCCAGGGCTCCCTGGCTTCCAGAAGGTAGCCCTCCAGTGCCCTTCCAGCCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR TCA 90 bp GGGGCTGGAAGGGCACTGGAGGGCTACCTTCTGGAAGCCAGGGAGCCCTGGGCCACAGGCCCGAGACCATaGCTCGGAAGGAGGGTGGTA +
Preference number: 4 (lower is better)
Translates to: GAGRALEGYLLEAREPWATGPRP*LGRRVV
Trigger: TACCACCCTCCTTCCGAGTCATGGTCTCGGGCCTGT...GGCCCAGGGCTCCCTGGCTTCCAGAAGGTAGCCCTCCAGTGCCCTTCCAGCCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR TCA 90 bp GCCCGTCTGCCCTTCCTGCTGACTCCCTGTTCCAGGGAGGCGGAAGTGGGCTGGCGTACCAGCCCGGGATaGTCCACTGGTACTTGCTGC +
Preference number: 4 (lower is better)
Translates to: ARLPFLLTPCSREAEVGWRTSPG*STGTCC
Trigger: GCAGCAAGTACCAGTGGATCATCCCGGGCTGGTACG...CCAGCCCACTTCCGCCTCCCTGGAACAGGGAGTCAGCAGGAAGGGCAGACGGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR GCA 90 bp GCCCGTCTGCCCTTCCTGCTGACTCCCTGTTCCAGGGAGGCGGAAGTGGGCTGGAGGGGGTCCACAGCCTaGCAGCAGATCAGGATGCAC +
Preference number: 4 (lower is better)
Translates to: ARLPFLLTPCSREAEVGWRGSTA*QQIRMH
Trigger: GTGCATCCTGATCTGCTGGCAGGCTGTGGACCCCCT...CCAGCCCACTTCCGCCTCCCTGGAACAGGGAGTCAGCAGGAAGGGCAGACGGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp AGCAGTCTGGAGAGGCAGCATGGTGCCCAGCTTCTCGCCGCCGTCAGCGTGCCATGCGGATCTGCTCGATaGCTAGCTCCACGGCGGGGA +
Preference number: 4 (lower is better)
Translates to: SSLERQHGAQLLAAVSVPCGSAR*LAPRRG
Trigger: TCCCCGCCGTGGAGCTAGCCATCGAGCAGATCCGCA...TGGCACGCTGACGGCGGCGAGAAGCTGGGCACCATGCTGCCTCTCCAGACTGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp GGGCTGTGCCCGTCTGCCCTTCCTGCTGACTCCCTGTTCCAGGGAGGCGGAAGTCGATGTAGCCTTCCATaGCAGCCAGGAGGCTCCTGC +
Preference number: 4 (lower is better)
Translates to: GLCPSALPADSLFQGGGSRCSLP*QPGGSC
Trigger: GCAGGAGCCTCCTGGCTGCCATGGAAGGCTACATCG...ACTTCCGCCTCCCTGGAACAGGGAGTCAGCAGGAAGGGCAGACGGGCACAGCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp AGCAGTCTGGAGAGGCAGCATGGTGCCCAGCTTCTCGCCGCCGTCAGCGTGCCAGCAGTGTTCCAGCAGTaGGCGGATGGAGATGTCCCG +
Preference number: 4 (lower is better)
Translates to: SSLERQHGAQLLAAVSVPAVFQQ*ADGDVP
Trigger: CGGGACATCTCCATCCGCCCACTGCTGGAACACTGC...TGGCACGCTGACGGCGGCGAGAAGCTGGGCACCATGCTGCCTCTCCAGACTGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp GGGCTGTGCCCGTCTGCCCTTCCTGCTGACTCCCTGTTCCAGGGAGGCGGAAGTGACTCGGAAGGAGGGTaGTACGTGTCTGTGGCGAGG +
Preference number: 4 (lower is better)
Translates to: GLCPSALPADSLFQGGGSDSEGG*YVSVAR
Trigger: CCTCGCCACAGACACGTACCACCCTCCTTCCGAGTC...ACTTCCGCCTCCCTGGAACAGGGAGTCAGCAGGAAGGGCAGACGGGCACAGCCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR TCA 90 bp CTTCTCGCCGCCGTCAGCGTGCCAGTGGCAGGCGCCTTGGCCCAGCATGGTGCTGAAGCTCTCCGTGTCTaGGATCTCAATGTCTTCCCC +
Preference number: 4 (lower is better)
Translates to: LLAAVSVPVAGALAQHGAEALRV*DLNVFP
Trigger: GGGGAAGACATTGAGATCTCAGACACGGAGAGCTTC...AGCACCATGCTGGGCCAAGGCGCCTGCCACTGGCACGCTGACGGCGGCGAGAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR TCA 90 bp AGCAGTCTGGAGAGGCAGCATGGTGCCCAGCTTCTCGCCGCCGTCAGCGTGCCACAAACTGGCCAAGGATaGTCCGCACGTCGTTCCCCT +
Preference number: 4 (lower is better)
Translates to: SSLERQHGAQLLAAVSVPQTGQG*SARRSP
Trigger: AGGGGAACGACGTGCGGATCATCCTTGGCCAGTTTG...TGGCACGCTGACGGCGGCGAGAAGCTGGGCACCATGCTGCCTCTCCAGACTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR GCA 90 bp AGCAGTCTGGAGAGGCAGCATGGTGCCCAGCTTCTCGCCGCCGTCAGCGTGCCACGGTGGTTTTCTGACTaGAGTCCCTCCAGGCGTGAC +
Preference number: 4 (lower is better)
Translates to: SSLERQHGAQLLAAVSVPRWFSD*SPSRRD
Trigger: GTCACGCCTGGAGGGACTGCAGTCAGAAAACCACCG...TGGCACGCTGACGGCGGCGAGAAGCTGGGCACCATGCTGCCTCTCCAGACTGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp GGGGCTGGAAGGGCACTGGAGGGCTACCTTCTGGAAGCCAGGGAGCCCTGGGCCCAATGCCGAGCCAGATaGTCATGTGGGTGTTTTCGC +
Preference number: 4 (lower is better)
Translates to: GAGRALEGYLLEAREPWAQCRAR*SCGCFR
Trigger: GCGAAAACACCCACATGACCATCTGGCTCGGCATTG...GGCCCAGGGCTCCCTGGCTTCCAGAAGGTAGCCCTCCAGTGCCCTTCCAGCCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR TCA 90 bp GGGCGGGCACCACCGATGACGTGTGTGCAGAGTGCAGAGGGCCATTTCTGCAGAGCAGGGTCTTGGCGATaGCCCAGATGCCATCGTAGG +
Preference number: 4 (lower is better)
Translates to: GRAPPMTCVQSAEGHFCRAGSWR*PRCHRR
Trigger: CCTACGATGGCATCTGGGTCATCGCCAAGACCCTGC...TCTGCAGAAATGGCCCTCTGCACTCTGCACACACGTCATCGGTGGTGCCCGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp GGGCGGGCACCACCGATGACGTGTGTGCAGAGTGCAGAGGGCCATTTCTGCAGAGATGTCCCGTCCTGCTaGGTCCGGCTCCATGCTGTA +
Preference number: 4 (lower is better)
Translates to: GRAPPMTCVQSAEGHFCRDVPSC*VRLHAV
Trigger: TACAGCATGGAGCCGGACCCAGCAGGACGGGACATC...TCTGCAGAAATGGCCCTCTGCACTCTGCACACACGTCATCGGTGGTGCCCGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp GGGCTGTGCCCGTCTGCCCTTCCTGCTGACTCCCTGTTCCAGGGAGGCGGAAGTACCAGGTTCCAGCCTTaGAGGGATTCCGCGATGATA +
Preference number: 4 (lower is better)
Translates to: GLCPSALPADSLFQGGGSTRFQP*RDSAMI
Trigger: TATCATCGCGGAATCCCTCCAAGGCTGGAACCTGGT...ACTTCCGCCTCCCTGGAACAGGGAGTCAGCAGGAAGGGCAGACGGGCACAGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp GGGCGGGCACCACCGATGACGTGTGTGCAGAGTGCAGAGGGCCATTTCTGCAGACAAGAACAGGCGTGGTaGCGGCGAAGGAAAGCTGCA +
Preference number: 4 (lower is better)
Translates to: GRAPPMTCVQSAEGHFCRQEQAW*RRRKAA
Trigger: TGCAGCTTTCCTTCGCCGCCACCACGCCTGTTCTTG...TCTGCAGAAATGGCCCTCTGCACTCTGCACACACGTCATCGGTGGTGCCCGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR CAA 72 bp TACAGCCGACACAGTGGGTGCATGACAGACTGTCGGTaGCATCCTGCAGAGCACGTCTGCAGTGCGGTGCCC +
Preference number: 4 (lower is better)
Translates to: YSRHSGCMTDCR*HPAEHVCSAVP
Trigger: GGGCACCGCACTGCAGACGTGCTCTGCAGGATGCAACCGACAGTCTGTCATGCACCCACTGTGTCGGCTGTA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR TCA 90 bp AGCAGTCTGGAGAGGCAGCATGGTGCCCAGCTTCTCGCCGCCGTCAGCGTGCCATCCCTGAGATGGTCTTaGTTTGTTTGGAGCTCAGGG +
Preference number: 4 (lower is better)
Translates to: SSLERQHGAQLLAAVSVPSLRWS*FVWSSG
Trigger: CCCTGAGCTCCAAACAAATCAAGACCATCTCAGGGA...TGGCACGCTGACGGCGGCGAGAAGCTGGGCACCATGCTGCCTCTCCAGACTGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR TCA 90 bp AGCAGTCTGGAGAGGCAGCATGGTGCCCAGCTTCTCGCCGCCGTCAGCGTGCCAAGGGGCTTGACATCTTaGTCAGCTTTTGGTTCCGGT +
Preference number: 4 (lower is better)
Translates to: SSLERQHGAQLLAAVSVPRGLTS*SAFGSG
Trigger: ACCGGAACCAAAAGCTGATCAAGATGTCAAGCCCCT...TGGCACGCTGACGGCGGCGAGAAGCTGGGCACCATGCTGCCTCTCCAGACTGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp GGGCTGTGCCCGTCTGCCCTTCCTGCTGACTCCCTGTTCCAGGGAGGCGGAAGTTTCGCTGCCATGTTCTaGTCAAACTGGCCAAGGATG +
Preference number: 4 (lower is better)
Translates to: GLCPSALPADSLFQGGGSFAAMF*SNWPRM
Trigger: CATCCTTGGCCAGTTTGACCAGAACATGGCAGCGAA...ACTTCCGCCTCCCTGGAACAGGGAGTCAGCAGGAAGGGCAGACGGGCACAGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR GCA 90 bp AGCAGTCTGGAGAGGCAGCATGGTGCCCAGCTTCTCGCCGCCGTCAGCGTGCCAGAGATCTTCCGAAGCTaGTCTAGAATGATGGTCTTG +
Preference number: 4 (lower is better)
Translates to: SSLERQHGAQLLAAVSVPEIFRS*SRMMVL
Trigger: CAAGACCATCATTCTAGAGCAGCTTCGGAAGATCTC...TGGCACGCTGACGGCGGCGAGAAGCTGGGCACCATGCTGCCTCTCCAGACTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp AATCCAGGTCTGACTCCCAGGCCGGTGCTCTTTGGGGTTCAATTTCAAGGGAAGCCAGCAGTGGGCGGATaGAGATGTCCCGTCCTGCTG +
Preference number: 4 (lower is better)
Translates to: NPGLTPRPVLFGVQFQGKPAVGG*RCPVLL
Trigger: CAGCAGGACGGGACATCTCCATCCGCCCACTGCTGG...CTTCCCTTGAAATTGAACCCCAAAGAGCACCGGCCTGGGAGTCAGACCTGGATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR TCA 90 bp AATCCAGGTCTGACTCCCAGGCCGGTGCTCTTTGGGGTTCAATTTCAAGGGAAGCCTGGTTCACGCTGGTaGCTGAGGTGGAGGTCTTCG +
Preference number: 4 (lower is better)
Translates to: NPGLTPRPVLFGVQFQGKPGSRW*LRWRSS
Trigger: CGAAGACCTCCACCTCAGTCACCAGCGTGAACCAGG...CTTCCCTTGAAATTGAACCCCAAAGAGCACCGGCCTGGGAGTCAGACCTGGATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR GCA 90 bp TCTTTAGGGAGTAAGCAAACCACGCATTTGTGCAGACGCCCCTGGACGGTGCCAGACTCGTTGCGGATCTaGTCGATGGCTAGCTCCACG +
Preference number: 4 (lower is better)
Translates to: SLGSKQTTHLCRRPWTVPDSLRI*SMASST
Trigger: CGTGGAGCTAGCCATCGAGCAGATCCGCAACGAGTC...TGGCACCGTCCAGGGGCGTCTGCACAAATGCGTGGTTTGCTTACTCCCTAAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR GCA 90 bp GTGACTTGCCCAAGGTCACGGAGAGAGTCTGAGGGGACTGAGGACTCAAATCCACAGCAGCTTCAGGATTaGCGGGTTCACCGCGTTGTC +
Preference number: 4 (lower is better)
Translates to: VTCPRSRRESEGTEDSNPQQLQD*RVHRVV
Trigger: GACAACGCGGTGAACCCGGCAATCCTGAAGCTGCTG...TGGATTTGAGTCCTCAGTCCCCTCAGACTCTCTCCGTGACCTTGGGCAAGTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp GGGCGGGCACCACCGATGACGTGTGTGCAGAGTGCAGAGGGCCATTTCTGCAGAAGGTCTTTGCAAACATaGCTCCAAAGGCGGTTGTGT +
Preference number: 4 (lower is better)
Translates to: GRAPPMTCVQSAEGHFCRRSLQT*LQRRLC
Trigger: ACACAACCGCCTTTGGAGCCATGTTTGCAAAGACCT...TCTGCAGAAATGGCCCTCTGCACTCTGCACACACGTCATCGGTGGTGCCCGCCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp AGACTGTCGGTTGCATCCTGCAGAGCACGTCTGCAGTGCGGTGCCCTGAATCCCCAGAGTGATGAGCTTTaGCACAAACACCAGGCAGAG +
Preference number: 4 (lower is better)
Translates to: RLSVASCRARLQCGALNPQSDEL*HKHQAE
Trigger: CTCTGCCTGGTGTTTGTGCCAAAGCTCATCACTCTG...GGGATTCAGGGCACCGCACTGCAGACGTGCTCTGCAGGATGCAACCGACAGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR TCA 90 bp GGGCGGGCACCACCGATGACGTGTGTGCAGAGTGCAGAGGGCCATTTCTGCAGACTGTGGAGTCTTCCCTaGGATGGTCTTGATTTGTTT +
Preference number: 4 (lower is better)
Translates to: GRAPPMTCVQSAEGHFCRLWSLP*DGLDLF
Trigger: AAACAAATCAAGACCATCTCAGGGAAGACTCCACAG...TCTGCAGAAATGGCCCTCTGCACTCTGCACACACGTCATCGGTGGTGCCCGCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR TCA 90 bp ACCACGCATTTGTGCAGACGCCCCTGGACGGTGCCATTCAGGCTTTTAGCAAAGTGGAATCGCCTGTTCTaGGTGGCTGCGTCAGGGTTT +
Preference number: 4 (lower is better)
Translates to: TTHLCRRPWTVPFRLLAKWNRLF*VAASGF
Trigger: AAACCCTGACGCAGCCACTCAGAACAGGCGATTCCA...CTTTGCTAAAAGCCTGAATGGCACCGTCCAGGGGCGTCTGCACAAATGCGTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR GCA 90 bp GCTGCCTTTAGGATTTCTTTAGGGAGTAAGCAAACCACGCATTTGTGCAGACGCCAGCCAGGAGGCTCCTaGGCAGGCAGCGTGAGGAGT +
Preference number: 4 (lower is better)
Translates to: AAFRISLGSKQTTHLCRRQPGGS*AGSVRS
Trigger: ACTCCTCACGCTGCCTGCGCAGGAGCCTCCTGGCTG...GCGTCTGCACAAATGCGTGGTTTGCTTACTCCCTAAAGAAATCCTAAAGGCAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp AATCCAGGTCTGACTCCCAGGCCGGTGCTCTTTGGGGTTCAATTTCAAGGGAAGAAGTCCTGGATCCGCTaGTGCCTGCTACTGGCATGC +
Preference number: 4 (lower is better)
Translates to: NPGLTPRPVLFGVQFQGKKSWIR*CLLLAC
Trigger: GCATGCCAGTAGCAGGCACCAGCGGATCCAGGACTT...CTTCCCTTGAAATTGAACCCCAAAGAGCACCGGCCTGGGAGTCAGACCTGGATT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp GTGACTTGCCCAAGGTCACGGAGAGAGTCTGAGGGGACTGAGGACTCAAATCCAAACTGCACGTTGGGCTaGTCACGTGTCAGGAAGGAG +
Preference number: 4 (lower is better)
Translates to: VTCPRSRRESEGTEDSNPNCTLG*SRVRKE
Trigger: CTCCTTCCTGACACGTGACCAGCCCAACGTGCAGTT...TGGATTTGAGTCCTCAGTCCCCTCAGACTCTCTCCGTGACCTTGGGCAAGTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR GCA 90 bp GTCGTTACTAATACCTCACAGGTCAGAGCTGCTTCACAGTGGAAAGCTATCCTGGGAGATGTCCCGTCCTaGTGGGTCCGGCTCCATGCT +
Preference number: 4 (lower is better)
Translates to: VVTNTSQVRAASQWKAILGDVPS*WVRLHA
Trigger: AGCATGGAGCCGGACCCAGCAGGACGGGACATCTCC...CAGGATAGCTTTCCACTGTGAAGCAGCTCTGACCTGTGAGGTATTAGTAACGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp AGACAGAGCACAGTTCGGAGTCACAAGGGATTACAGACACACGCTCACCTCCGATGCAGAACTGCACGTTaGGCTGGTCACGTGTCAGGA +
Preference number: 4 (lower is better)
Translates to: RQSTVRSHKGLQTHAHLRCRTAR*AGHVSG
Trigger: TCCTGACACGTGACCAGCCCAACGTGCAGTTCTGCA...TCGGAGGTGAGCGTGTGTCTGTAATCCCTTGTGACTCCGAACTGTGCTCTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR TCA 90 bp GTTACTAATACCTCACAGGTCAGAGCTGCTTCACAGTGGAAAGCTATCCTGGATGTAGGGGCGCAGGAGTaGCTCGTTGCGGATCTGCTC +
Preference number: 4 (lower is better)
Translates to: VTNTSQVRAASQWKAILDVGAQE*LVADLL
Trigger: GAGCAGATCCGCAACGAGTCACTCCTGCGCCCCTAC...ATCCAGGATAGCTTTCCACTGTGAAGCAGCTCTGACCTGTGAGGTATTAGTAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR TCA 90 bp AGACAGAGCACAGTTCGGAGTCACAAGGGATTACAGACACACGCTCACCTCCGAGTCTTTGCATGTTCTTaGGGGCTCGGTCGTGTTCCA +
Preference number: 4 (lower is better)
Translates to: RQSTVRSHKGLQTHAHLRVFACS*GLGRVP
Trigger: TGGAACACGACCGAGCCCTCAAGAACATGCAAAGAC...TCGGAGGTGAGCGTGTGTCTGTAATCCCTTGTGACTCCGAACTGTGCTCTGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR GCA 90 bp GCTGCCTTTAGGATTTCTTTAGGGAGTAAGCAAACCACGCATTTGTGCAGACGCAGCCGGCGCTGGATGTaGTCTGGGGAGTTGATGTCC +
Preference number: 4 (lower is better)
Translates to: AAFRISLGSKQTTHLCRRSRRWM*SGELMS
Trigger: GGACATCAACTCCCCAGAGCACATCCAGCGCCGGCT...GCGTCTGCACAAATGCGTGGTTTGCTTACTCCCTAAAGAAATCCTAAAGGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR GCA 90 bp ATCTTGTGGGTTAACCTAGAAGACAGAGCACAGTTCGGAGTCACAAGGGATTACGTCTCCATGGCCCTCTaGAGGGTCTTGGCGATGACC +
Preference number: 4 (lower is better)
Translates to: ILWVNLEDRAQFGVTRDYVSMAL*RVLAMT
Trigger: GGTCATCGCCAAGACCCTGCAGAGGGCCATGGAGAC...GTAATCCCTTGTGACTCCGAACTGTGCTCTGTCTTCTAGGTTAACCCACAAGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp AATCCAGGTCTGACTCCCAGGCCGGTGCTCTTTGGGGTTCAATTTCAAGGGAAGAGCCAGATGGTCATGTaGGTGTTTTCGCAGTGTTCC +
Preference number: 4 (lower is better)
Translates to: NPGLTPRPVLFGVQFQGKSQMVM*VFSQCS
Trigger: GGAACACTGCGAAAACACCCACATGACCATCTGGCT...CTTCCCTTGAAATTGAACCCCAAAGAGCACCGGCCTGGGAGTCAGACCTGGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR TCA 90 bp TCTTTAGGGAGTAAGCAAACCACGCATTTGTGCAGACGCCCCTGGACGGTGCCACTTGTAGCTGCATGGTaGCTTCTTCCAAGTCTTTGT +
Preference number: 4 (lower is better)
Translates to: SLGSKQTTHLCRRPWTVPLVAAW*LLPSLC
Trigger: ACAAAGACTTGGAAGAAGTCACCATGCAGCTACAAG...TGGCACCGTCCAGGGGCGTCTGCACAAATGCGTGGTTTGCTTACTCCCTAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR GCA 90 bp TCTGGGAGTAGACATTCCATGATTAGCTCGGATGGTTCCCCTTATTACCAGGAAGGATCCGCTGGTGCCTaGTACTGGCATGCAGTGTCT +
Preference number: 4 (lower is better)
Translates to: SGSRHSMISSDGSPYYQEGSAGA*YWHAVS
Trigger: AGACACTGCATGCCAGTAGCAGGCACCAGCGGATCC...TTCCTGGTAATAAGGGGAACCATCCGAGCTAATCATGGAATGTCTACTCCCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR GCA 90 bp CAACTCCTCTTTGTTTGCAGACGCCAAGGAGAAGTCATTGCCATTCCTCTCCCTGCCAGCAGATCAGGATaGACAGATCGATCAGCAGCA +
Preference number: 4 (lower is better)
Translates to: QLLFVCRRQGEVIAIPLPASRSG*TDRSAA
Trigger: TGCTGCTGATCGATCTGTGCATCCTGATCTGCTGGC...AGGGAGAGGAATGGCAATGACTTCTCCTTGGCGTCTGCAAACAAAGAGGAGTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp ACCTACAGGATCAGTAGACAGAGATGTATCTTGTGGGTTAACCTAGAAGACAGAGGTGGTACGTGTCTGTaGCGAGGGCTGGCTGTAGGG +
Preference number: 4 (lower is better)
Translates to: TYRISRQRCILWVNLEDRGGTCL*RGLAVG
Trigger: CCCTACAGCCAGCCCTCGCCACAGACACGTACCACC...TCTGTCTTCTAGGTTAACCCACAAGATACATCTCTGTCTACTGATCCTGTAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR TCA 90 bp GTCGTTACTAATACCTCACAGGTCAGAGCTGCTTCACAGTGGAAAGCTATCCTGTGTGGTCTGTGTAGTTaGAGTCCTGGATCCGCTGGT +
Preference number: 4 (lower is better)
Translates to: VVTNTSQVRAASQWKAILCGLCS*SPGSAG
Trigger: ACCAGCGGATCCAGGACTTCAACTACACAGACCACA...CAGGATAGCTTTCCACTGTGAAGCAGCTCTGACCTGTGAGGTATTAGTAACGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR GCA 90 bp TCAGAGCTGCTTCACAGTGGAAAGCTATCCTGGATGAATGAGATCAAGTGTCCAGCAGGAGTGACTCGTTaGGGATCTGCTCGATGGCTA +
Preference number: 4 (lower is better)
Translates to: SELLHSGKLSWMNEIKCPAGVTR*GSARWL
Trigger: TAGCCATCGAGCAGATCCGCAACGAGTCACTCCTGC...TGGACACTTGATCTCATTCATCCAGGATAGCTTTCCACTGTGAAGCAGCTCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR GCA 90 bp GTTACTAATACCTCACAGGTCAGAGCTGCTTCACAGTGGAAAGCTATCCTGGATGATCGATCAGCAGCATaGCCCCCACAATCACGAGCA +
Preference number: 4 (lower is better)
Translates to: VTNTSQVRAASQWKAILDDRSAA*PPQSRA
Trigger: TGCTCGTGATTGTGGGGGGCATGCTGCTGATCGATC...ATCCAGGATAGCTTTCCACTGTGAAGCAGCTCTGACCTGTGAGGTATTAGTAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp ACCTACAGGATCAGTAGACAGAGATGTATCTTGTGGGTTAACCTAGAAGACAGACCGCAAGAACAGGCGTaGTGGCGGCGAAGGAAAGCT +
Preference number: 4 (lower is better)
Translates to: TYRISRQRCILWVNLEDRPQEQA*WRRRKA
Trigger: AGCTTTCCTTCGCCGCCACCACGCCTGTTCTTGCGG...TCTGTCTTCTAGGTTAACCCACAAGATACATCTCTGTCTACTGATCCTGTAGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp ATCGATACCATGCAGTGGGGCAAGAGAAACGCCTCATTTTTACACTTGATTCTGCATGCAGTGTCTCCATaGCCCTCTGCAGGGTCTTGG +
Preference number: 4 (lower is better)
Translates to: IDTMQWGKRNASFLHLILHAVSP*PSAGSW
Trigger: CCAAGACCCTGCAGAGGGCCATGGAGACACTGCATG...CAGAATCAAGTGTAAAAATGAGGCGTTTCTCTTGCCCCACTGCATGGTATCGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR CAA 72 bp TTTAGGATTTCTTTAGGGAGTAAGCAAACCACGCATTaGTGCAGACGCCCCTGGACGGTGCCATTCAGGCTT +
Preference number: 4 (lower is better)
Translates to: FRISLGSKQTTH*CRRPWTVPFRL
Trigger: AAGCCTGAATGGCACCGTCCAGGGGCGTCTGCACAAATGCGTGGTTTGCTTACTCCCTAAAGAAATCCTAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR TCA 90 bp GCCTCTCTCCTTTGTCTAGAGTTTGATTTGTTTTTGCAAGTTTCTGACATCCCATTGTGTAGCCCACGGTaGGAATCCAGGTCCGGACCG +
Preference number: 4 (lower is better)
Translates to: ASLLCLEFDLFLQVSDIPLCSPR*ESRSGP
Trigger: CGGTCCGGACCTGGATTCTCACCGTGGGCTACACAA...TGGGATGTCAGAAACTTGCAAAAACAAATCAAACTCTAGACAAAGGAGAGAGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR GCA 90 bp TCGGAGTCACAAGGGATTACAGACACACGCTCACCTCCGACAATCCAATACTTTTGTAGGCGTAGACAATaGCGAGCCAGATGGTCATGT +
Preference number: 4 (lower is better)
Translates to: SESQGITDTRSPPTIQYFCRRRQ*RARWSC
Trigger: ACATGACCATCTGGCTCGGCATTGTCTACGCCTACA...AAAGTATTGGATTGTCGGAGGTGAGCGTGTGTCTGTAATCCCTTGTGACTCCGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR GCA 90 bp ACCTACAGGATCAGTAGACAGAGATGTATCTTGTGGGTTAACCTAGAAGACAGAGCCACGATGCAGAACTaGACGTTGGGCTGGTCACGT +
Preference number: 4 (lower is better)
Translates to: TYRISRQRCILWVNLEDRATMQN*TLGWSR
Trigger: ACGTGACCAGCCCAACGTGCAGTTCTGCATCGTGGC...TCTGTCTTCTAGGTTAACCCACAAGATACATCTCTGTCTACTGATCCTGTAGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp AATGTGTGGCATTTATCAGAGAGTAACAAACATCTCTCTTCTGATGGATGTTCCCGTCCACGCCTCCAATaGACGGGAGGTAGGCGTGGT +
Preference number: 4 (lower is better)
Translates to: NVWHLSESNKHLSSDGCSRPRLQ*TGGRRG
Trigger: ACCACGCCTACCTCCCGTCCATTGGAGGCGTGGACG...GGAACATCCATCAGAAGAGAGATGTTTGTTACTCTCTGATAAATGCCACACATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR GCA 90 bp GCCTCTCTCCTTTGTCTAGAGTTTGATTTGTTTTTGCAAGTTTCTGACATCCCATCCTGGATCCGCTGGTaGCTGCTACTGGCATGCAGT +
Preference number: 4 (lower is better)
Translates to: ASLLCLEFDLFLQVSDIPSWIRW*LLLACS
Trigger: ACTGCATGCCAGTAGCAGGCACCAGCGGATCCAGGA...TGGGATGTCAGAAACTTGCAAAAACAAATCAAACTCTAGACAAAGGAGAGAGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp GCCTCTCTCCTTTGTCTAGAGTTTGATTTGTTTTTGCAAGTTTCTGACATCCCAACCCATGGAACTTGCTaGGCCCTACACCCGAACGCT +
Preference number: 4 (lower is better)
Translates to: ASLLCLEFDLFLQVSDIPTHGTC*ALHPNA
Trigger: AGCGTTCGGGTGTAGGGCCCAGCAAGTTCCATGGGT...TGGGATGTCAGAAACTTGCAAAAACAAATCAAACTCTAGACAAAGGAGAGAGGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp CAAGAGAAACGCCTCATTTTTACACTTGATTCTGCCAGTTCCGGTCTAATTGAAGCTGGTGCCTGCTACTaGCATGCAGTGTCTCCATGG +
Preference number: 4 (lower is better)
Translates to: QEKRLIFTLDSASSGLIEAGACY*HAVSPW
Trigger: CCATGGAGACACTGCATGCCAGTAGCAGGCACCAGC...TTCAATTAGACCGGAACTGGCAGAATCAAGTGTAAAAATGAGGCGTTTCTCTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp GTCGTTACTAATACCTCACAGGTCAGAGCTGCTTCACAGTGGAAAGCTATCCTGGACCAAAGAGGAAGATaGATGCATAGGACAGCATCC +
Preference number: 4 (lower is better)
Translates to: VVTNTSQVRAASQWKAILDQRGR*MHRTAS
Trigger: GGATGCTGTCCTATGCATCCATCTTCCTCTTTGGTC...CAGGATAGCTTTCCACTGTGAAGCAGCTCTGACCTGTGAGGTATTAGTAACGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR TCA 90 bp CAACTCCTCTTTGTTTGCAGACGCCAAGGAGAAGTCATTGCCATTCCTCTCCCTTCATTTTCACATTTTTaGAGATGGCATGGACCCTCC +
Preference number: 4 (lower is better)
Translates to: QLLFVCRRQGEVIAIPLPSFSHF*RWHGPS
Trigger: GGAGGGTCCATGCCATCTTCAAAAATGTGAAAATGA...AGGGAGAGGAATGGCAATGACTTCTCCTTGGCGTCTGCAAACAAAGAGGAGTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR TCA 90 bp TCTGGGAGTAGACATTCCATGATTAGCTCGGATGGTTCCCCTTATTACCAGGAATCTTCTGGTTCTGTGTaGACTGGAATCGCCTGTTCT +
Preference number: 4 (lower is better)
Translates to: SGSRHSMISSDGSPYYQESSGSV*TGIACS
Trigger: AGAACAGGCGATTCCAGTTCACACAGAACCAGAAGA...TTCCTGGTAATAAGGGGAACCATCCGAGCTAATCATGGAATGTCTACTCCCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR GCA 90 bp CAAGAGAAACGCCTCATTTTTACACTTGATTCTGCCAGTTCCGGTCTAATTGAACCTGTTCTGAGTGGCTaGGTCAGGGTTTGTCCTCAG +
Preference number: 4 (lower is better)
Translates to: QEKRLIFTLDSASSGLIEPVLSG*VRVCPQ
Trigger: CTGAGGACAAACCCTGACGCAGCCACTCAGAACAGG...TTCAATTAGACCGGAACTGGCAGAATCAAGTGTAAAAATGAGGCGTTTCTCTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp ATCGATACCATGCAGTGGGGCAAGAGAAACGCCTCATTTTTACACTTGATTCTGATGTTCTGGTCAAACTaGCCAAGGATGATCCGCACG +
Preference number: 4 (lower is better)
Translates to: IDTMQWGKRNASFLHLILMFWSN*PRMIRT
Trigger: CGTGCGGATCATCCTTGGCCAGTTTGACCAGAACAT...CAGAATCAAGTGTAAAAATGAGGCGTTTCTCTTGCCCCACTGCATGGTATCGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp CAAGAGAAACGCCTCATTTTTACACTTGATTCTGCCAGTTCCGGTCTAATTGAAATCGCCTGTTCTGAGTaGCTGCGTCAGGGTTTGTCC +
Preference number: 4 (lower is better)
Translates to: QEKRLIFTLDSASSGLIEIACSE*LRQGLS
Trigger: GGACAAACCCTGACGCAGCCACTCAGAACAGGCGAT...TTCAATTAGACCGGAACTGGCAGAATCAAGTGTAAAAATGAGGCGTTTCTCTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR GCA 90 bp ACCTACAGGATCAGTAGACAGAGATGTATCTTGTGGGTTAACCTAGAAGACAGAGGCTTTCAGTCCCTTTaGATTGTCACACTCGGTGTC +
Preference number: 4 (lower is better)
Translates to: TYRISRQRCILWVNLEDRGFQSL*IVTLGV
Trigger: GACACCGAGTGTGACAATGCAAAGGGACTGAAAGCC...TCTGTCTTCTAGGTTAACCCACAAGATACATCTCTGTCTACTGATCCTGTAGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR GCA 90 bp CAAGAGAAACGCCTCATTTTTACACTTGATTCTGCCAGTTCCGGTCTAATTGAACCTCTATGGGGTCTTTaGATGTTCTTGAGGGCTCGG +
Preference number: 4 (lower is better)
Translates to: QEKRLIFTLDSASSGLIEPLWGL*MFLRAR
Trigger: CCGAGCCCTCAAGAACATGCAAAGACCCCATAGAGG...TTCAATTAGACCGGAACTGGCAGAATCAAGTGTAAAAATGAGGCGTTTCTCTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp CAACTCCTCTTTGTTTGCAGACGCCAAGGAGAAGTCATTGCCATTCCTCTCCCTCCAAACACCATCAAATaGTTCGGCCCATACTTTATT +
Preference number: 4 (lower is better)
Translates to: QLLFVCRRQGEVIAIPLPPNTIK*FGPYFI
Trigger: AATAAAGTATGGGCCGAACCATTTGATGGTGTTTGG...AGGGAGAGGAATGGCAATGACTTCTCCTTGGCGTCTGCAAACAAAGAGGAGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp CAAGAGAAACGCCTCATTTTTACACTTGATTCTGCCAGTTCCGGTCTAATTGAATGGTGCAGGGATCATTaGAGAAGCTCTCCGTGTCTG +
Preference number: 4 (lower is better)
Translates to: QEKRLIFTLDSASSGLIEWCRDH*RSSPCL
Trigger: CAGACACGGAGAGCTTCTCCAATGATCCCTGCACCA...TTCAATTAGACCGGAACTGGCAGAATCAAGTGTAAAAATGAGGCGTTTCTCTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp ACCTACAGGATCAGTAGACAGAGATGTATCTTGTGGGTTAACCTAGAAGACAGATTCATTCGTAGGCGGTaGTTTTCTGACTGCAGTCCC +
Preference number: 4 (lower is better)
Translates to: TYRISRQRCILWVNLEDRFIRRR*FSDCSP
Trigger: GGGACTGCAGTCAGAAAACCACCGCCTACGAATGAA...TCTGTCTTCTAGGTTAACCCACAAGATACATCTCTGTCTACTGATCCTGTAGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR GCA 90 bp ATCTTGTGGGTTAACCTAGAAGACAGAGCACAGTTCGGAGTCACAAGGGATTACCGGCCCATACTTTATTaGATCATAGAAGGCTTTCAG +
Preference number: 4 (lower is better)
Translates to: ILWVNLEDRAQFGVTRDYRPILY*IIEGFQ
Trigger: CTGAAAGCCTTCTATGATGCAATAAAGTATGGGCCG...GTAATCCCTTGTGACTCCGAACTGTGCTCTGTCTTCTAGGTTAACCCACAAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR GCA 90 bp GTTACTAATACCTCACAGGTCAGAGCTGCTTCACAGTGGAAAGCTATCCTGGATTATTCTCTTTCGTATTaGTGTGGAGTCTTCCCTGAG +
Preference number: 4 (lower is better)
Translates to: VTNTSQVRAASQWKAILDYSLSY*CGVFPE
Trigger: CTCAGGGAAGACTCCACAGCAATACGAAAGAGAATA...ATCCAGGATAGCTTTCCACTGTGAAGCAGCTCTGACCTGTGAGGTATTAGTAAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR TCA 90 bp ACCTACAGGATCAGTAGACAGAGATGTATCTTGTGGGTTAACCTAGAAGACAGATTCAAAGGTCTTTTCTaGGACGAAGGATCCATCGAG +
Preference number: 4 (lower is better)
Translates to: TYRISRQRCILWVNLEDRFKGLF*DEGSIE
Trigger: CTCGATGGATCCTTCGTCTCAGAAAAGACCTTTGAA...TCTGTCTTCTAGGTTAACCCACAAGATACATCTCTGTCTACTGATCCTGTAGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp TCTGGGAGTAGACATTCCATGATTAGCTCGGATGGTTCCCCTTATTACCAGGAAATCTTGATCAGCTTTTaGTTCCGGTTCTTGATGTTG +
Preference number: 4 (lower is better)
Translates to: SGSRHSMISSDGSPYYQEILISF*FRFLML
Trigger: CAACATCAAGAACCGGAACCAAAAGCTGATCAAGAT...TTCCTGGTAATAAGGGGAACCATCCGAGCTAATCATGGAATGTCTACTCCCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CCA 90 bp CAAGAGAAACGCCTCATTTTTACACTTGATTCTGCCAGTTCCGGTCTAATTGAATTTTTGAAGATGGCATaGACCCTCCAGGTCTTTGCA +
Preference number: 4 (lower is better)
Translates to: QEKRLIFTLDSASSGLIEFLKMA*TLQVFA
Trigger: TGCAAAGACCTGGAGGGTCCATGCCATCTTCAAAAA...TTCAATTAGACCGGAACTGGCAGAATCAAGTGTAAAAATGAGGCGTTTCTCTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
3UTR CAA 72 bp GAGGCCTCTCTCCTTTGTCTAGAGTTTGATTTGTTTTaGCAAGTTTCTGACATCCCAACTCCTCTTTGTTTG +
Preference number: 4 (lower is better)
Translates to: EASLLCLEFDLF*QVSDIPTPLCL
Trigger: CAAACAAAGAGGAGTTGGGATGTCAGAAACTTGCAAAAACAAATCAAACTCTAGACAAAGGAGAGAGGCCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 90 bp CCAGGAAGTAGGGGCGCAGGAGTGACTCGTTGCGGATCTGCTCGATaGCTAGCTCCACGGCGGGGAGCACGCCGCGCCCGATGCTGCCCT +
Preference number: 5 (lower is better)
Translates to: PGSRGAGVTRCGSAR*LAPRRGARRARCCP
Trigger: AGGGCAGCATCGGGCGCGGCGTGCTCCCCGCCGTGGAGCTAGCCATCGAGCAGATCCGCAACGAGTCACTCCTGCGCCCCTACTTCCTGG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS GCA 90 bp GCCAGGAGGCTCCTGCGCAGGCAGCGTGAGGAGTTGGCCTCCACGTaGACCTGTTCCCACCACGCAGGCTCGTACCAGCCCGGGATGATC +
Preference number: 5 (lower is better)
Translates to: ARRLLRRQREELAST*TCSHHAGSYQPGMI
Trigger: GATCATCCCGGGCTGGTACGAGCCTGCGTGGTGGGAACAGGTGCACGTGGAGGCCAACTCCTCACGCTGCCTGCGCAGGAGCCTCCTGGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS GCA 90 bp CGTAGAGTCGCAGGTCCAGGAAGTAGGGGCGCAGGAGTGACTCGTTaGGGATCTGCTCGATGGCTAGCTCCACGGCGGGGAGCACGCCGC +
Preference number: 5 (lower is better)
Translates to: RRVAGPGSRGAGVTR*GSARWLAPRRGARR
Trigger: GCGGCGTGCTCCCCGCCGTGGAGCTAGCCATCGAGCAGATCCGCAACGAGTCACTCCTGCGCCCCTACTTCCTGGACCTGCGACTCTACG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS GCA 90 bp ACCCCAGTCAGGTCGTTCCTCACCTCGGAGAAGCGCTGCACGTCCTaGGTGAGTGTGCCCACGCGCCGCCAGCGGAAGTGCTTCAGCAGC +
Preference number: 5 (lower is better)
Translates to: TPVRSFLTSEKRCTS*VSVPTRRQRKCFSS
Trigger: GCTGCTGAAGCACTTCCGCTGGCGGCGCGTGGGCACACTCACGCAGGACGTGCAGCGCTTCTCCGAGGTGAGGAACGACCTGACTGGGGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 90 bp CTTCCATGGCAGCCAGGAGGCTCCTGCGCAGGCAGCGTGAGGAGTTaGCCTCCACGTGCACCTGTTCCCACCACGCAGGCTCGTACCAGC +
Preference number: 5 (lower is better)
Translates to: LPWQPGGSCAGSVRS*PPRAPVPTTQARTS
Trigger: GCTGGTACGAGCCTGCGTGGTGGGAACAGGTGCACGTGGAGGCCAACTCCTCACGCTGCCTGCGCAGGAGCCTCCTGGCTGCCATGGAAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS TCA 90 bp GATGTAGCCTTCCATGGCAGCCAGGAGGCTCCTGCGCAGGCAGCGTaGGGAGTTGGCCTCCACGTGCACCTGTTCCCACCACGCAGGCTC +
Preference number: 5 (lower is better)
Translates to: DVAFHGSQEAPAQAA*GVGLHVHLFPPRRL
Trigger: GAGCCTGCGTGGTGGGAACAGGTGCACGTGGAGGCCAACTCCTCACGCTGCCTGCGCAGGAGCCTCCTGGCTGCCATGGAAGGCTACATC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS GCA 90 bp CGCTGCACGTCCTGCGTGAGTGTGCCCACGCGCCGCCAGCGGAAGTaGTTCAGCAGCTTCAGGATTGCCGGGTTCACCGCGTTGTCTGAG +
Preference number: 5 (lower is better)
Translates to: RCTSCVSVPTRRQRK*FSSFRIAGFTALSE
Trigger: CTCAGACAACGCGGTGAACCCGGCAATCCTGAAGCTGCTGAAGCACTTCCGCTGGCGGCGCGTGGGCACACTCACGCAGGACGTGCAGCG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS TCA 90 bp CAGTCAGGTCGTTCCTCACCTCGGAGAAGCGCTGCACGTCCTGCGTaGGTGTGCCCACGCGCCGCCAGCGGAAGTGCTTCAGCAGCTTCA +
Preference number: 5 (lower is better)
Translates to: QSGRSSPRRSAARPA*VCPRAASGSASAAS
Trigger: TGAAGCTGCTGAAGCACTTCCGCTGGCGGCGCGTGGGCACACTCACGCAGGACGTGCAGCGCTTCTCCGAGGTGAGGAACGACCTGACTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS GCA 90 bp CGAAGTCCACTCCGATGTAGCCTTCCATGGCAGCCAGGAGGCTCCTaGGCAGGCAGCGTGAGGAGTTGGCCTCCACGTGCACCTGTTCCC +
Preference number: 5 (lower is better)
Translates to: RSPLRCSLPWQPGGS*AGSVRSWPPRAPVP
Trigger: GGGAACAGGTGCACGTGGAGGCCAACTCCTCACGCTGCCTGCGCAGGAGCCTCCTGGCTGCCATGGAAGGCTACATCGGAGTGGACTTCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 90 bp TACAGGCCCGAGACCATGACTCGGAAGGAGGGTGGTACGTGTCTGTaGCGAGGGCTGGCTGTAGGGCTGACACAGGGGCTGACGCAGCTG +
Preference number: 5 (lower is better)
Translates to: YRPETMTRKEGGTCL*RGLAVGLTQGLTQL
Trigger: CAGCTGCGTCAGCCCCTGTGTCAGCCCTACAGCCAGCCCTCGCCACAGACACGTACCACCCTCCTTCCGAGTCATGGTCTCGGGCCTGTA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp GGGGCTGGAAGGGCACTGGAGGGCTACCTTCTGGAAGCCAGGGAGCCCTGGGCCGGACCCTCCAGGTCTTaGCAAACATGGCTCCAAAGG +
Preference number: 5 (lower is better)
Translates to: GAGRALEGYLLEAREPWAGPSRS*QTWLQR
Trigger: CCTTTGGAGCCATGTTTGCAAAGACCTGGAGGGTCC...GGCCCAGGGCTCCCTGGCTTCCAGAAGGTAGCCCTCCAGTGCCCTTCCAGCCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 90 bp GTTTGGAGCTCAGGGGCTCGAAGTCCACTCCGATGTAGCCTTCCATaGCAGCCAGGAGGCTCCTGCGCAGGCAGCGTGAGGAGTTGGCCT +
Preference number: 5 (lower is better)
Translates to: VWSSGARSPLRCSLP*QPGGSCAGSVRSWP
Trigger: AGGCCAACTCCTCACGCTGCCTGCGCAGGAGCCTCCTGGCTGCCATGGAAGGCTACATCGGAGTGGACTTCGAGCCCCTGAGCTCCAAAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 90 bp GCCGAGCCAGATGGTCATGTGGGTGTTTTCGCAGTGTTCCAGCAGTaGGCGGATGGAGATGTCCCGTCCTGCTGGGTCCGGCTCCATGCT +
Preference number: 5 (lower is better)
Translates to: AEPDGHVGVFAVFQQ*ADGDVPSCWVRLHA
Trigger: AGCATGGAGCCGGACCCAGCAGGACGGGACATCTCCATCCGCCCACTGCTGGAACACTGCGAAAACACCCACATGACCATCTGGCTCGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp GGGCTGTGCCCGTCTGCCCTTCCTGCTGACTCCCTGTTCCAGGGAGGCGGAAGTCTCATCCCAATGTACTaGCTGTCGTTGAGGGCAGGG +
Preference number: 5 (lower is better)
Translates to: GLCPSALPADSLFQGGGSLIPMY*LSLRAG
Trigger: CCCTGCCCTCAACGACAGCAAGTACATTGGGATGAG...ACTTCCGCCTCCCTGGAACAGGGAGTCAGCAGGAAGGGCAGACGGGCACAGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS GCA 90 bp GTGATGGTGCTACAGAAGATGATGACCAGGGCCACGATGCAGAACTaGACGTTGGGCTGGTCACGTGTCAGGAAGGAGACGGCGGCCCCG +
Preference number: 5 (lower is better)
Translates to: VMVLQKMMTRATMQN*TLGWSRVRKETAAP
Trigger: CGGGGCCGCCGTCTCCTTCCTGACACGTGACCAGCCCAACGTGCAGTTCTGCATCGTGGCCCTGGTCATCATCTTCTGTAGCACCATCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107749.4
ENSMUST00000205643.2
CDS CCA 90 bp ACAGGCGTGGTGGCGGCGAAGGAAAGCTGCACCAGGTTCCAGCCTTaGAGGGATTCCGCGATGATAGAGGTGACAGACGGACAGACGCCT +
Preference number: 5 (lower is better)
Translates to: TGVVAAKESCTRFQP*RDSAMIEVTDGQTP
Trigger: AGGCGTCTGTCCGTCTGTCACCTCTATCATCGCGGAATCCCTCCAAGGCTGGAACCTGGTGCAGCTTTCCTTCGCCGCCACCACGCCTGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS TCA 90 bp CCACGTGCACCTGTTCCCACCACGCAGGCTCGTACCAGCCCGGGATaGTCCACTGGTACTTGCTGCCAAACATGCTCTCCTCAAAGGCAC +
Preference number: 5 (lower is better)
Translates to: PRAPVPTTQARTSPG*STGTCCQTCSPQRH
Trigger: GTGCCTTTGAGGAGAGCATGTTTGGCAGCAAGTACCAGTGGATCATCCCGGGCTGGTACGAGCCTGCGTGGTGGGAACAGGTGCACGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 90 bp AGATGGTCATGTGGGTGTTTTCGCAGTGTTCCAGCAGTGGGCGGATaGAGATGTCCCGTCCTGCTGGGTCCGGCTCCATGCTGTACCGCT +
Preference number: 5 (lower is better)
Translates to: RWSCGCFRSVPAVGG*RCPVLLGPAPCCTA
Trigger: AGCGGTACAGCATGGAGCCGGACCCAGCAGGACGGGACATCTCCATCCGCCCACTGCTGGAACACTGCGAAAACACCCACATGACCATCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 90 bp CAGAAGATGATGACCAGGGCCACGATGCAGAACTGCACGTTGGGCTaGTCACGTGTCAGGAAGGAGACGGCGGCCCCGATGATGCACATG +
Preference number: 5 (lower is better)
Translates to: QKMMTRATMQNCTLG*SRVRKETAAPMMHM
Trigger: CATGTGCATCATCGGGGCCGCCGTCTCCTTCCTGACACGTGACCAGCCCAACGTGCAGTTCTGCATCGTGGCCCTGGTCATCATCTTCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107749.4
ENSMUST00000205643.2
CDS-3UTR CAA 90 bp AGACTGTCGGTTGCATCCTGCAGAGCACGTCTGCAGTGCGGTGCCCTGAATCCCATGCAGAACTGCACGTaGGGCTGGTCACGTGTCAGG +
Preference number: 5 (lower is better)
Translates to: RLSVASCRARLQCGALNPMQNCT*GWSRVR
Trigger: CCTGACACGTGACCAGCCCAACGTGCAGTTCTGCAT...GGGATTCAGGGCACCGCACTGCAGACGTGCTCTGCAGGATGCAACCGACAGTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS GCA 90 bp TTGTCCAGCTCTGTGATCTTCATTCGTAGGCGGTGGTTTTCTGACTaGAGTCCCTCCAGGCGTGACGTGCTCGCCTGGTTCACGCTGGTG +
Preference number: 5 (lower is better)
Translates to: LSSSVIFIRRRWFSD*SPSRRDVLAWFTLV
Trigger: CACCAGCGTGAACCAGGCGAGCACGTCACGCCTGGAGGGACTGCAGTCAGAAAACCACCGCCTACGAATGAAGATCACAGAGCTGGACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 90 bp CGGTGGTTTTCTGACTGCAGTCCCTCCAGGCGTGACGTGCTCGCCTaGTTCACGCTGGTGACTGAGGTGGAGGTCTTCGAATCTTCTTTC +
Preference number: 5 (lower is better)
Translates to: RWFSDCSPSRRDVLA*FTLVTEVEVFESSF
Trigger: GAAAGAAGATTCGAAGACCTCCACCTCAGTCACCAGCGTGAACCAGGCGAGCACGTCACGCCTGGAGGGACTGCAGTCAGAAAACCACCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp GCCCGTCTGCCCTTCCTGCTGACTCCCTGTTCCAGGGAGGCGGAAGTGGGCTGGTCGGCCCATACTTTATaGCATCATAGAAGGCTTTCA +
Preference number: 5 (lower is better)
Translates to: ARLPFLLTPCSREAEVGWSAHTL*HHRRLS
Trigger: TGAAAGCCTTCTATGATGCAATAAAGTATGGGCCGA...CCAGCCCACTTCCGCCTCCCTGGAACAGGGAGTCAGCAGGAAGGGCAGACGGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS TCA 90 bp ACTGCAGTCCCTCCAGGCGTGACGTGCTCGCCTGGTTCACGCTGGTaGCTGAGGTGGAGGTCTTCGAATCTTCTTTCTTCTGGTTCTGTG +
Preference number: 5 (lower is better)
Translates to: TAVPPGVTCSPGSRW*LRWRSSNLLSSGSV
Trigger: CACAGAACCAGAAGAAAGAAGATTCGAAGACCTCCACCTCAGTCACCAGCGTGAACCAGGCGAGCACGTCACGCCTGGAGGGACTGCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 90 bp ACCTGTTCCCACCACGCAGGCTCGTACCAGCCCGGGATGATCCACTaGTACTTGCTGCCAAACATGCTCTCCTCAAAGGCACAACAGAAG +
Preference number: 5 (lower is better)
Translates to: TCSHHAGSYQPGMIH*YLLPNMLSSKAQQK
Trigger: CTTCTGTTGTGCCTTTGAGGAGAGCATGTTTGGCAGCAAGTACCAGTGGATCATCCCGGGCTGGTACGAGCCTGCGTGGTGGGAACAGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp TCGGAGTCACAAGGGATTACAGACACACGCTCACCTCCGACAATCCAATACTTTCCCTTGGCCACCTCCTaGGTGAGCGGCATGAGGCCC +
Preference number: 5 (lower is better)
Translates to: SESQGITDTRSPPTIQYFPLATS*VSGMRP
Trigger: GGGCCTCATGCCGCTCACCAAGGAGGTGGCCAAGGG...AAAGTATTGGATTGTCGGAGGTGAGCGTGTGTCTGTAATCCCTTGTGACTCCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp AATCCAGGTCTGACTCCCAGGCCGGTGCTCTTTGGGGTTCAATTTCAAGGGAAGCGCAGGAGTGACTCGTaGCGGATCTGCTCGATGGCT +
Preference number: 5 (lower is better)
Translates to: NPGLTPRPVLFGVQFQGKRRSDS*RICSMA
Trigger: AGCCATCGAGCAGATCCGCAACGAGTCACTCCTGCG...CTTCCCTTGAAATTGAACCCCAAAGAGCACCGGCCTGGGAGTCAGACCTGGATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp ACCACGCATTTGTGCAGACGCCCCTGGACGGTGCCATTCAGGCTTTTAGCAAAGCACCAGGTTCCAGCCTaGGAGGGATTCCGCGATGAT +
Preference number: 5 (lower is better)
Translates to: TTHLCRRPWTVPFRLLAKHQVPA*EGFRDD
Trigger: ATCATCGCGGAATCCCTCCAAGGCTGGAACCTGGTG...CTTTGCTAAAAGCCTGAATGGCACCGTCCAGGGGCGTCTGCACAAATGCGTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp TCTTTAGGGAGTAAGCAAACCACGCATTTGTGCAGACGCCCCTGGACGGTGCCAGCATACCCATGGAACTaGCTGGGCCCTACACCCGAA +
Preference number: 5 (lower is better)
Translates to: SLGSKQTTHLCRRPWTVPAYPWN*LGPTPE
Trigger: TTCGGGTGTAGGGCCCAGCAAGTTCCATGGGTATGC...TGGCACCGTCCAGGGGCGTCTGCACAAATGCGTGGTTTGCTTACTCCCTAAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 90 bp TCTTCCAAGTCTTTGTCCAGCTCTGTGATCTTCATTCGTAGGCGGTaGTTTTCTGACTGCAGTCCCTCCAGGCGTGACGTGCTCGCCTGG +
Preference number: 5 (lower is better)
Translates to: SSKSLSSSVIFIRRR*FSDCSPSRRDVLAW
Trigger: CCAGGCGAGCACGTCACGCCTGGAGGGACTGCAGTCAGAAAACCACCGCCTACGAATGAAGATCACAGAGCTGGACAAAGACTTGGAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp GTGACTTGCCCAAGGTCACGGAGAGAGTCTGAGGGGACTGAGGACTCAAATCCAATGTACTTGCTGTCGTaGAGGGCAGGGATGCTCACG +
Preference number: 5 (lower is better)
Translates to: VTCPRSRRESEGTEDSNPMYLLS*RAGMLT
Trigger: CGTGAGCATCCCTGCCCTCAACGACAGCAAGTACAT...TGGATTTGAGTCCTCAGTCCCCTCAGACTCTCTCCGTGACCTTGGGCAAGTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS TCA 90 bp GAAGAGGAAGGCGCTGGCCATGATCATGCCGAGGATAGTGAGAGCTaGCAGGATGCTATACAGTGGAAGCGAGATCTTCCGAAGCTGCTC +
Preference number: 5 (lower is better)
Translates to: EEEGAGHDHAEDSES*QDAIQWKRDLPKLL
Trigger: GAGCAGCTTCGGAAGATCTCGCTTCCACTGTATAGCATCCTGTCAGCTCTCACTATCCTCGGCATGATCATGGCCAGCGCCTTCCTCTTC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS GCA 90 bp AGAGCTGACAGGATGCTATACAGTGGAAGCGAGATCTTCCGAAGCTaGTCTAGAATGATGGTCTTGTCCTTGGGTGGCTCCGACCCCTGG +
Preference number: 5 (lower is better)
Translates to: RADRMLYSGSEIFRS*SRMMVLSLGGSDPW
Trigger: CCAGGGGTCGGAGCCACCCAAGGACAAGACCATCATTCTAGAGCAGCTTCGGAAGATCTCGCTTCCACTGTATAGCATCCTGTCAGCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp TCTTTAGGGAGTAAGCAAACCACGCATTTGTGCAGACGCCCCTGGACGGTGCCAGTTTCGTTCATGGCGTaGAGGATGATTCTGCCCAGG +
Preference number: 5 (lower is better)
Translates to: SLGSKQTTHLCRRPWTVPVSFMA*RMILPR
Trigger: CCTGGGCAGAATCATCCTCAACGCCATGAACGAAAC...TGGCACCGTCCAGGGGCGTCTGCACAAATGCGTGGTTTGCTTACTCCCTAAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp GGGCGGGCACCACCGATGACGTGTGTGCAGAGTGCAGAGGGCCATTTCTGCAGATTTTGGTTCCGGTTCTaGATGTTGAAGAAGAGGAAG +
Preference number: 5 (lower is better)
Translates to: GRAPPMTCVQSAEGHFCRFWFRF*MLKKRK
Trigger: CTTCCTCTTCTTCAACATCAAGAACCGGAACCAAAA...TCTGCAGAAATGGCCCTCTGCACTCTGCACACACGTCATCGGTGGTGCCCGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS TCA 90 bp GGATGCTATACAGTGGAAGCGAGATCTTCCGAAGCTGCTCTAGAATaGTGGTCTTGTCCTTGGGTGGCTCCGACCCCTGGAACCTTATGG +
Preference number: 5 (lower is better)
Translates to: GCYTVEARSSEAALE*WSCPWVAPTPGTLW
Trigger: CCATAAGGTTCCAGGGGTCGGAGCCACCCAAGGACAAGACCATCATTCTAGAGCAGCTTCGGAAGATCTCGCTTCCACTGTATAGCATCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 90 bp ATGCTCTCCTCAAAGGCACAACAGAAGACTTTCGCTGCCATGTTCTaGTCAAACTGGCCAAGGATGATCCGCACGTCGTTCCCCTTGAGC +
Preference number: 5 (lower is better)
Translates to: MLSSKAQQKTFAAMF*SNWPRMIRTSFPLS
Trigger: GCTCAAGGGGAACGACGTGCGGATCATCCTTGGCCAGTTTGACCAGAACATGGCAGCGAAAGTCTTCTGTTGTGCCTTTGAGGAGAGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp GGGCGGGCACCACCGATGACGTGTGTGCAGAGTGCAGAGGGCCATTTCTGCAGAAGCAGCTTCTGGTCTTaGATGATCTTCTTCTTCATT +
Preference number: 5 (lower is better)
Translates to: GRAPPMTCVQSAEGHFCRSSFWS*MIFFFI
Trigger: AATGAAGAAGAAGATCATCAAAGACCAGAAGCTGCT...TCTGCAGAAATGGCCCTCTGCACTCTGCACACACGTCATCGGTGGTGCCCGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp AATCCAGGTCTGACTCCCAGGCCGGTGCTCTTTGGGGTTCAATTTCAAGGGAAGTCCTCTATGGGGTCTTaGCATGTTCTTGAGGGCTCG +
Preference number: 5 (lower is better)
Translates to: NPGLTPRPVLFGVQFQGKSSMGS*HVLEGS
Trigger: CGAGCCCTCAAGAACATGCAAAGACCCCATAGAGGA...CTTCCCTTGAAATTGAACCCCAAAGAGCACCGGCCTGGGAGTCAGACCTGGATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp GCCTCTCTCCTTTGTCTAGAGTTTGATTTGTTTTTGCAAGTTTCTGACATCCCACGCCCGATGCTGCCCTaGGCCACCTCCTTGGTGAGC +
Preference number: 5 (lower is better)
Translates to: ASLLCLEFDLFLQVSDIPRPMLP*ATSLVS
Trigger: GCTCACCAAGGAGGTGGCCAAGGGCAGCATCGGGCG...TGGGATGTCAGAAACTTGCAAAAACAAATCAAACTCTAGACAAAGGAGAGAGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp CCTAGAAGACAGAGCACAGTTCGGAGTCACAAGGGATTACAGACACACGCTCACATGTGCTCTGGGGAGTaGATGTCCTCTATGGGGTCT +
Preference number: 5 (lower is better)
Translates to: PRRQSTVRSHKGLQTHAHMCSGE*MSSMGS
Trigger: AGACCCCATAGAGGACATCAACTCCCCAGAGCACAT...GTGAGCGTGTGTCTGTAATCCCTTGTGACTCCGAACTGTGCTCTGTCTTCTAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 90 bp TCAAAGGCACAACAGAAGACTTTCGCTGCCATGTTCTGGTCAAACTaGCCAAGGATGATCCGCACGTCGTTCCCCTTGAGCTTTTTGACG +
Preference number: 5 (lower is better)
Translates to: SKAQQKTFAAMFWSN*PRMIRTSFPLSFLT
Trigger: CGTCAAAAAGCTCAAGGGGAACGACGTGCGGATCATCCTTGGCCAGTTTGACCAGAACATGGCAGCGAAAGTCTTCTGTTGTGCCTTTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp CAACTCCTCTTTGTTTGCAGACGCCAAGGAGAAGTCATTGCCATTCCTCTCCCTTTCCCCTTGAGCTTTTaGACGCTGGTGCAGGGATCA +
Preference number: 5 (lower is better)
Translates to: QLLFVCRRQGEVIAIPLPFPLSF*TLVQGS
Trigger: TGATCCCTGCACCAGCGTCAAAAAGCTCAAGGGGAA...AGGGAGAGGAATGGCAATGACTTCTCCTTGGCGTCTGCAAACAAAGAGGAGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp CCTAGAAGACAGAGCACAGTTCGGAGTCACAAGGGATTACAGACACACGCTCACGTGACTCCGAAGAAGTaGGTTTCGTTCATGGCGTTG +
Preference number: 5 (lower is better)
Translates to: PRRQSTVRSHKGLQTHAHVTPKK*VSFMAL
Trigger: CAACGCCATGAACGAAACCAACTTCTTCGGAGTCAC...GTGAGCGTGTGTCTGTAATCCCTTGTGACTCCGAACTGTGCTCTGTCTTCTAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp TCTTTAGGGAGTAAGCAAACCACGCATTTGTGCAGACGCCCCTGGACGGTGCCAAACCTTATGGTGTCGTaGATGATCTCCAGTGTGTCA +
Preference number: 5 (lower is better)
Translates to: SLGSKQTTHLCRRPWTVPNLMVS*MISSVS
Trigger: TGACACACTGGAGATCATCAACGACACCATAAGGTT...TGGCACCGTCCAGGGGCGTCTGCACAAATGCGTGGTTTGCTTACTCCCTAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp ATCGATACCATGCAGTGGGGCAAGAGAAACGCCTCATTTTTACACTTGATTCTGATGATGGTCTTGTCCTaGGGTGGCTCCGACCCCTGG +
Preference number: 5 (lower is better)
Translates to: IDTMQWGKRNASFLHLILMMVLS*GGSDPW
Trigger: CCAGGGGTCGGAGCCACCCAAGGACAAGACCATCAT...CAGAATCAAGTGTAAAAATGAGGCGTTTCTCTTGCCCCACTGCATGGTATCGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp TCTTTAGGGAGTAAGCAAACCACGCATTTGTGCAGACGCCCCTGGACGGTGCCAACTTCTTCCAAGTCTTaGTCCAGCTCTGTGATCTTC +
Preference number: 5 (lower is better)
Translates to: SLGSKQTTHLCRRPWTVPTSSKS*SSSVIF
Trigger: GAAGATCACAGAGCTGGACAAAGACTTGGAAGAAGT...TGGCACCGTCCAGGGGCGTCTGCACAAATGCGTGGTTTGCTTACTCCCTAAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS GCA 90 bp CTGGGCCCTACACCCGAACGCTTGCTGTTGTATTCTCTTTCGTATTaGTGTGGAGTCTTCCCTGAGATGGTCTTGATTTGTTTGGAGCTC +
Preference number: 5 (lower is better)
Translates to: LGPTPERLLLYSLSY*CGVFPEMVLICLEL
Trigger: GAGCTCCAAACAAATCAAGACCATCTCAGGGAAGACTCCACAGCAATACGAAAGAGAATACAACAGCAAGCGTTCGGGTGTAGGGCCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp GTTACTAATACCTCACAGGTCAGAGCTGCTTCACAGTGGAAAGCTATCCTGGATCTGGTGCAGGGATCATaGGAGAAGCTCTCCGTGTCT +
Preference number: 5 (lower is better)
Translates to: VTNTSQVRAASQWKAILDLVQGS*EKLSVS
Trigger: AGACACGGAGAGCTTCTCCAATGATCCCTGCACCAG...ATCCAGGATAGCTTTCCACTGTGAAGCAGCTCTGACCTGTGAGGTATTAGTAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp TCTGGGAGTAGACATTCCATGATTAGCTCGGATGGTTCCCCTTATTACCAGGAAGGTCTTTGCATGTTCTaGAGGGCTCGGTCGTGTTCC +
Preference number: 5 (lower is better)
Translates to: SGSRHSMISSDGSPYYQEGLCMF*RARSCS
Trigger: GGAACACGACCGAGCCCTCAAGAACATGCAAAGACC...TTCCTGGTAATAAGGGGAACCATCCGAGCTAATCATGGAATGTCTACTCCCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS TCA 90 bp GAGAATCCAGGTCCGGACCGTGCAGAGTGTTTCAAAGGTCTTTTCTaGGACGAAGGATCCATCGAGACCAAAGAGGAAGATGGATGCATA +
Preference number: 5 (lower is better)
Translates to: ENPGPDRAECFKGLF*DEGSIETKEEDGCI
Trigger: TATGCATCCATCTTCCTCTTTGGTCTCGATGGATCCTTCGTCTCAGAAAAGACCTTTGAAACACTCTGCACGGTCCGGACCTGGATTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS GCA 90 bp GTTCGGCCCATACTTTATTGCATCATAGAAGGCTTTCAGTCCCTTTaGATTGTCACACTCGGTGTCGTAGAGTCGCAGGTCCAGGAAGTA +
Preference number: 5 (lower is better)
Translates to: VRPILYCIIEGFQSL*IVTLGVVESQVQEV
Trigger: TACTTCCTGGACCTGCGACTCTACGACACCGAGTGTGACAATGCAAAGGGACTGAAAGCCTTCTATGATGCAATAAAGTATGGGCCGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS GCA 90 bp CTTCATTTTCACATTTTTGAAGATGGCATGGACCCTCCAGGTCTTTaGAAACATGGCTCCAAAGGCGGTTGTGTAGCCCACGGTGAGAAT +
Preference number: 5 (lower is better)
Translates to: LHFHIFEDGMDPPGL*KHGSKGGCVAHGEN
Trigger: ATTCTCACCGTGGGCTACACAACCGCCTTTGGAGCCATGTTTGCAAAGACCTGGAGGGTCCATGCCATCTTCAAAAATGTGAAAATGAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000107749.4
ENSMUST00000205643.2
CDS-3UTR CAA 90 bp GTTACTAATACCTCACAGGTCAGAGCTGCTTCACAGTGGAAAGCTATCCTGGATATGGTCTTGATTTGTTaGGAGCTCAGGGGCTCGAAG +
Preference number: 5 (lower is better)
Translates to: VTNTSQVRAASQWKAILDMVLIC*ELRGSK
Trigger: CTTCGAGCCCCTGAGCTCCAAACAAATCAAGACCAT...ATCCAGGATAGCTTTCCACTGTGAAGCAGCTCTGACCTGTGAGGTATTAGTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp TCGGAGTCACAAGGGATTACAGACACACGCTCACCTCCGACAATCCAATACTTTTTCCCTGAGATGGTCTaGATTTGTTTGGAGCTCAGG +
Preference number: 5 (lower is better)
Translates to: SESQGITDTRSPPTIQYFFPEMV*ICLELR
Trigger: CCTGAGCTCCAAACAAATCAAGACCATCTCAGGGAA...AAAGTATTGGATTGTCGGAGGTGAGCGTGTGTCTGTAATCCCTTGTGACTCCGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp GTTACTAATACCTCACAGGTCAGAGCTGCTTCACAGTGGAAAGCTATCCTGGATTTCCGGTTCTTGATGTaGAAGAAGAGGAAGGCGCTG +
Preference number: 5 (lower is better)
Translates to: VTNTSQVRAASQWKAILDFRFLM*KKRKAL
Trigger: CAGCGCCTTCCTCTTCTTCAACATCAAGAACCGGAA...ATCCAGGATAGCTTTCCACTGTGAAGCAGCTCTGACCTGTGAGGTATTAGTAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS GCA 90 bp ACAGACGCCTCCAAACACCATCAAATGGTTCGGCCCATACTTTATTaGATCATAGAAGGCTTTCAGTCCCTTTGCATTGTCACACTCGGT +
Preference number: 5 (lower is better)
Translates to: TDASKHHQMVRPILY*IIEGFQSLCIVTLG
Trigger: ACCGAGTGTGACAATGCAAAGGGACTGAAAGCCTTCTATGATGCAATAAAGTATGGGCCGAACCATTTGATGGTGTTTGGAGGCGTCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS-3UTR CAA 90 bp ATCGATACCATGCAGTGGGGCAAGAGAAACGCCTCATTTTTACACTTGATTCTGCACATGATCCCCACATaGTACACACTCATCCCAATG +
Preference number: 5 (lower is better)
Translates to: IDTMQWGKRNASFLHLILHMIPT*YTLIPM
Trigger: CATTGGGATGAGTGTGTACAATGTGGGGATCATGTG...CAGAATCAAGTGTAAAAATGAGGCGTTTCTCTTGCCCCACTGCATGGTATCGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 90 bp ACGGCGGGGAGCACGCCGCGCCCGATGCTGCCCTTGGCCACCTCCTaGGTGAGCGGCATGAGGCCCATGATGGAGAGCGGCGGGCTGCTG +
Preference number: 6 (lower is better)
Translates to: TAGSTPRPMLPLATS*VSGMRPMMESGGLL
Trigger: CAGCAGCCCGCCGCTCTCCATCATGGGCCTCATGCCGCTCACCAAGGAGGTGGCCAAGGGCAGCATCGGGCGCGGCGTGCTCCCCGCCGT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 72 bp TCCACGGCGGGGAGCACGCCGCGCCCGATGCTGCCCTaGGCCACCTCCTTGGTGAGCGGCATGAGGCCCATG +
Preference number: 6 (lower is better)
Translates to: STAGSTPRPMLP*ATSLVSGMRPM
Trigger: CATGGGCCTCATGCCGCTCACCAAGGAGGTGGCCAAGGGCAGCATCGGGCGCGGCGTGCTCCCCGCCGTGGA
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 72 bp AGGGGCGCAGGAGTGACTCGTTGCGGATCTGCTCGATaGCTAGCTCCACGGCGGGGAGCACGCCGCGCCCGA +
Preference number: 6 (lower is better)
Translates to: RGAGVTRCGSAR*LAPRRGARRAR
Trigger: TCGGGCGCGGCGTGCTCCCCGCCGTGGAGCTAGCCATCGAGCAGATCCGCAACGAGTCACTCCTGCGCCCCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 90 bp ATGGCTAGCTCCACGGCGGGGAGCACGCCGCGCCCGATGCTGCCCTaGGCCACCTCCTTGGTGAGCGGCATGAGGCCCATGATGGAGAGC +
Preference number: 6 (lower is better)
Translates to: MASSTAGSTPRPMLP*ATSLVSGMRPMMES
Trigger: GCTCTCCATCATGGGCCTCATGCCGCTCACCAAGGAGGTGGCCAAGGGCAGCATCGGGCGCGGCGTGCTCCCCGCCGTGGAGCTAGCCAT
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 72 bp AGCACGCCGCGCCCGATGCTGCCCTTGGCCACCTCCTaGGTGAGCGGCATGAGGCCCATGATGGAGAGCGGC +
Preference number: 6 (lower is better)
Translates to: STPRPMLPLATS*VSGMRPMMESG
Trigger: GCCGCTCTCCATCATGGGCCTCATGCCGCTCACCAAGGAGGTGGCCAAGGGCAGCATCGGGCGCGGCGTGCT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 72 bp GCAGCCAGGAGGCTCCTGCGCAGGCAGCGTGAGGAGTaGGCCTCCACGTGCACCTGTTCCCACCACGCAGGC +
Preference number: 6 (lower is better)
Translates to: AARRLLRRQREE*ASTCTCSHHAG
Trigger: GCCTGCGTGGTGGGAACAGGTGCACGTGGAGGCCAACTCCTCACGCTGCCTGCGCAGGAGCCTCCTGGCTGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS GCA 72 bp AGGTCGTTCCTCACCTCGGAGAAGCGCTGCACGTCCTaGGTGAGTGTGCCCACGCGCCGCCAGCGGAAGTGC +
Preference number: 6 (lower is better)
Translates to: RSFLTSEKRCTS*VSVPTRRQRKC
Trigger: GCACTTCCGCTGGCGGCGCGTGGGCACACTCACGCAGGACGTGCAGCGCTTCTCCGAGGTGAGGAACGACCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS GCA 72 bp ACCCCAGTCAGGTCGTTCCTCACCTCGGAGAAGCGCTaGACGTCCTGCGTGAGTGTGCCCACGCGCCGCCAG +
Preference number: 6 (lower is better)
Translates to: TPVRSFLTSEKR*TSCVSVPTRRQ
Trigger: CTGGCGGCGCGTGGGCACACTCACGCAGGACGTGCAGCGCTTCTCCGAGGTGAGGAACGACCTGACTGGGGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 72 bp CAGCCAGGAGGCTCCTGCGCAGGCAGCGTGAGGAGTTaGCCTCCACGTGCACCTGTTCCCACCACGCAGGCT +
Preference number: 6 (lower is better)
Translates to: QPGGSCAGSVRS*PPRAPVPTTQA
Trigger: AGCCTGCGTGGTGGGAACAGGTGCACGTGGAGGCCAACTCCTCACGCTGCCTGCGCAGGAGCCTCCTGGCTG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 90 bp CCTTCCATGGCAGCCAGGAGGCTCCTGCGCAGGCAGCGTGAGGAGTaGGCCTCCACGTGCACCTGTTCCCACCACGCAGGCTCGTACCAG +
Preference number: 6 (lower is better)
Translates to: PSMAARRLLRRQREE*ASTCTCSHHAGSYQ
Trigger: CTGGTACGAGCCTGCGTGGTGGGAACAGGTGCACGTGGAGGCCAACTCCTCACGCTGCCTGCGCAGGAGCCTCCTGGCTGCCATGGAAGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS TCA 72 bp CGTTCCTCACCTCGGAGAAGCGCTGCACGTCCTGCGTaGGTGTGCCCACGCGCCGCCAGCGGAAGTGCTTCA +
Preference number: 6 (lower is better)
Translates to: RSSPRRSAARPA*VCPRAASGSAS
Trigger: TGAAGCACTTCCGCTGGCGGCGCGTGGGCACACTCACGCAGGACGTGCAGCGCTTCTCCGAGGTGAGGAACG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS GCA 72 bp TCCTGCGTGAGTGTGCCCACGCGCCGCCAGCGGAAGTaGTTCAGCAGCTTCAGGATTGCCGGGTTCACCGCG +
Preference number: 6 (lower is better)
Translates to: SCVSVPTRRQRK*FSSFRIAGFTA
Trigger: CGCGGTGAACCCGGCAATCCTGAAGCTGCTGAAGCACTTCCGCTGGCGGCGCGTGGGCACACTCACGCAGGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS TCA 72 bp TTCCATGGCAGCCAGGAGGCTCCTGCGCAGGCAGCGTaGGGAGTTGGCCTCCACGTGCACCTGTTCCCACCA +
Preference number: 6 (lower is better)
Translates to: FHGSQEAPAQAA*GVGLHVHLFPP
Trigger: TGGTGGGAACAGGTGCACGTGGAGGCCAACTCCTCACGCTGCCTGCGCAGGAGCCTCCTGGCTGCCATGGAA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS GCA 72 bp CTCCGATGTAGCCTTCCATGGCAGCCAGGAGGCTCCTaGGCAGGCAGCGTGAGGAGTTGGCCTCCACGTGCA +
Preference number: 6 (lower is better)
Translates to: LRCSLPWQPGGS*AGSVRSWPPRA
Trigger: TGCACGTGGAGGCCAACTCCTCACGCTGCCTGCGCAGGAGCCTCCTGGCTGCCATGGAAGGCTACATCGGAG
65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS GCA 72 bp GTGTTCCAGCAGTGGGCGGATGGAGATGTCCCGTCCTaGTGGGTCCGGCTCCATGCTGTACCGCTCCACTGT +
Preference number: 6 (lower is better)
Translates to: VFQQWADGDVPS*WVRLHAVPLHC
Trigger: ACAGTGGAGCGGTACAGCATGGAGCCGGACCCAGCAGGACGGGACATCTCCATCCGCCCACTGCTGGAACAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 72 bp ATGACCAGGGCCACGATGCAGAACTGCACGTTGGGCTaGTCACGTGTCAGGAAGGAGACGGCGGCCCCGATG +
Preference number: 6 (lower is better)
Translates to: MTRATMQNCTLG*SRVRKETAAPM
Trigger: CATCGGGGCCGCCGTCTCCTTCCTGACACGTGACCAGCCCAACGTGCAGTTCTGCATCGTGGCCCTGGTCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107749.4
ENSMUST00000205643.2
CDS CCA 72 bp GAGACCATGACTCGGAAGGAGGGTGGTACGTGTCTGTaGCGAGGGCTGGCTGTAGGGCTGACACAGGGGCTG +
Preference number: 6 (lower is better)
Translates to: ETMTRKEGGTCL*RGLAVGLTQGL
Trigger: CAGCCCCTGTGTCAGCCCTACAGCCAGCCCTCGCCACAGACACGTACCACCCTCCTTCCGAGTCATGGTCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 90 bp GTGTGCCCACGCGCCGCCAGCGGAAGTGCTTCAGCAGCTTCAGGATaGCCGGGTTCACCGCGTTGTCTGAGGGCACCGTCCGGAAGAAAT +
Preference number: 6 (lower is better)
Translates to: VCPRAASGSASAASG*PGSPRCLRAPSGRN
Trigger: ATTTCTTCCGGACGGTGCCCTCAGACAACGCGGTGAACCCGGCAATCCTGAAGCTGCTGAAGCACTTCCGCTGGCGGCGCGTGGGCACAC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS GCA 72 bp TACCGCTCCACTGTCCTCCGCAGGGGGTCCACAGCCTaGCAGCAGATCAGGATGCACAGATCGATCAGCAGC +
Preference number: 6 (lower is better)
Translates to: YRSTVLRRGSTA*QQIRMHRSISS
Trigger: GCTGCTGATCGATCTGTGCATCCTGATCTGCTGGCAGGCTGTGGACCCCCTGCGGAGGACAGTGGAGCGGTA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000107749.4
ENSMUST00000205643.2
CDS CCA 72 bp TGTGGGTGTTTTCGCAGTGTTCCAGCAGTGGGCGGATaGAGATGTCCCGTCCTGCTGGGTCCGGCTCCATGC +
Preference number: 6 (lower is better)
Translates to: CGCFRSVPAVGG*RCPVLLGPAPC
Trigger: GCATGGAGCCGGACCCAGCAGGACGGGACATCTCCATCCGCCCACTGCTGGAACACTGCGAAAACACCCACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 90 bp AACAGGCGTGGTGGCGGCGAAGGAAAGCTGCACCAGGTTCCAGCCTaGGAGGGATTCCGCGATGATAGAGGTGACAGACGGACAGACGCC +
Preference number: 6 (lower is better)
Translates to: NRRGGGEGKLHQVPA*EGFRDDRGDRRTDA
Trigger: GGCGTCTGTCCGTCTGTCACCTCTATCATCGCGGAATCCCTCCAAGGCTGGAACCTGGTGCAGCTTTCCTTCGCCGCCACCACGCCTGTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 72 bp GATGGTCATGTGGGTGTTTTCGCAGTGTTCCAGCAGTaGGCGGATGGAGATGTCCCGTCCTGCTGGGTCCGG +
Preference number: 6 (lower is better)
Translates to: DGHVGVFAVFQQ*ADGDVPSCWVR
Trigger: CCGGACCCAGCAGGACGGGACATCTCCATCCGCCCACTGCTGGAACACTGCGAAAACACCCACATGACCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 72 bp TCTGACTGCAGTCCCTCCAGGCGTGACGTGCTCGCCTaGTTCACGCTGGTGACTGAGGTGGAGGTCTTCGAA +
Preference number: 6 (lower is better)
Translates to: SDCSPSRRDVLA*FTLVTEVEVFE
Trigger: TTCGAAGACCTCCACCTCAGTCACCAGCGTGAACCAGGCGAGCACGTCACGCCTGGAGGGACTGCAGTCAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 72 bp AAGATGATGACCAGGGCCACGATGCAGAACTGCACGTaGGGCTGGTCACGTGTCAGGAAGGAGACGGCGGCC +
Preference number: 6 (lower is better)
Translates to: KMMTRATMQNCT*GWSRVRKETAA
Trigger: GGCCGCCGTCTCCTTCCTGACACGTGACCAGCCCAACGTGCAGTTCTGCATCGTGGCCCTGGTCATCATCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107749.4
ENSMUST00000205643.2
CDS CAA 90 bp GTGCTACAGAAGATGATGACCAGGGCCACGATGCAGAACTGCACGTaGGGCTGGTCACGTGTCAGGAAGGAGACGGCGGCCCCGATGATG +
Preference number: 6 (lower is better)
Translates to: VLQKMMTRATMQNCT*GWSRVRKETAAPMM
Trigger: CATCATCGGGGCCGCCGTCTCCTTCCTGACACGTGACCAGCCCAACGTGCAGTTCTGCATCGTGGCCCTGGTCATCATCTTCTGTAGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107749.4
ENSMUST00000205643.2
CDS TCA 72 bp CCTGTTCCCACCACGCAGGCTCGTACCAGCCCGGGATaGTCCACTGGTACTTGCTGCCAAACATGCTCTCCT +
Preference number: 6 (lower is better)
Translates to: PVPTTQARTSPG*STGTCCQTCSP
Trigger: AGGAGAGCATGTTTGGCAGCAAGTACCAGTGGATCATCCCGGGCTGGTACGAGCCTGCGTGGTGGGAACAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 90 bp GTCTTGTCCTTGGGTGGCTCCGACCCCTGGAACCTTATGGTGTCGTaGATGATCTCCAGTGTGTCAGCCACAGCGTTGTACTCGCCGACC +
Preference number: 6 (lower is better)
Translates to: VLSLGGSDPWNLMVS*MISSVSATALYSPT
Trigger: GGTCGGCGAGTACAACGCTGTGGCTGACACACTGGAGATCATCAACGACACCATAAGGTTCCAGGGGTCGGAGCCACCCAAGGACAAGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 90 bp GTCAGGAAGGAGACGGCGGCCCCGATGATGCACATGATCCCCACATaGTACACACTCATCCCAATGTACTTGCTGTCGTTGAGGGCAGGG +
Preference number: 6 (lower is better)
Translates to: VRKETAAPMMHMIPT*YTLIPMYLLSLRAG
Trigger: CCCTGCCCTCAACGACAGCAAGTACATTGGGATGAGTGTGTACAATGTGGGGATCATGTGCATCATCGGGGCCGCCGTCTCCTTCCTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107749.4
ENSMUST00000205643.2
CDS TCA 72 bp CCTCCAGGCGTGACGTGCTCGCCTGGTTCACGCTGGTaGCTGAGGTGGAGGTCTTCGAATCTTCTTTCTTCT +
Preference number: 6 (lower is better)
Translates to: PPGVTCSPGSRW*LRWRSSNLLSS
Trigger: AGAAGAAAGAAGATTCGAAGACCTCCACCTCAGTCACCAGCGTGAACCAGGCGAGCACGTCACGCCTGGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS GCA 72 bp CTACAGAAGATGATGACCAGGGCCACGATGCAGAACTaGACGTTGGGCTGGTCACGTGTCAGGAAGGAGACG +
Preference number: 6 (lower is better)
Translates to: LQKMMTRATMQN*TLGWSRVRKET
Trigger: CGTCTCCTTCCTGACACGTGACCAGCCCAACGTGCAGTTCTGCATCGTGGCCCTGGTCATCATCTTCTGTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107749.4
ENSMUST00000205643.2
CDS GCA 72 bp TCTGTGATCTTCATTCGTAGGCGGTGGTTTTCTGACTaGAGTCCCTCCAGGCGTGACGTGCTCGCCTGGTTC +
Preference number: 6 (lower is better)
Translates to: SVIFIRRRWFSD*SPSRRDVLAWF
Trigger: GAACCAGGCGAGCACGTCACGCCTGGAGGGACTGCAGTCAGAAAACCACCGCCTACGAATGAAGATCACAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 72 bp GGAGCCCCTTGTAGGCGTAGACAATGCCGAGCCAGATaGTCATGTGGGTGTTTTCGCAGTGTTCCAGCAGTG +
Preference number: 6 (lower is better)
Translates to: GAPCRRRQCRAR*SCGCFRSVPAV
Trigger: CACTGCTGGAACACTGCGAAAACACCCACATGACCATCTGGCTCGGCATTGTCTACGCCTACAAGGGGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 72 bp GCAGGCTCGTACCAGCCCGGGATGATCCACTGGTACTaGCTGCCAAACATGCTCTCCTCAAAGGCACAACAG +
Preference number: 6 (lower is better)
Translates to: AGSYQPGMIHWY*LPNMLSSKAQQ
Trigger: CTGTTGTGCCTTTGAGGAGAGCATGTTTGGCAGCAAGTACCAGTGGATCATCCCGGGCTGGTACGAGCCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 72 bp TGGAGGGACAGCCGGCGCTGGATGTGCTCTGGGGAGTaGATGTCCTCTATGGGGTCTTTGCATGTTCTTGAG +
Preference number: 6 (lower is better)
Translates to: WRDSRRWMCSGE*MSSMGSLHVLE
Trigger: CTCAAGAACATGCAAAGACCCCATAGAGGACATCAACTCCCCAGAGCACATCCAGCGCCGGCTGTCCCTCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 90 bp TCCCACCACGCAGGCTCGTACCAGCCCGGGATGATCCACTGGTACTaGCTGCCAAACATGCTCTCCTCAAAGGCACAACAGAAGACTTTC +
Preference number: 6 (lower is better)
Translates to: SHHAGSYQPGMIHWY*LPNMLSSKAQQKTF
Trigger: GAAAGTCTTCTGTTGTGCCTTTGAGGAGAGCATGTTTGGCAGCAAGTACCAGTGGATCATCCCGGGCTGGTACGAGCCTGCGTGGTGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS TCA 72 bp ACAGTGGAAGCGAGATCTTCCGAAGCTGCTCTAGAATaGTGGTCTTGTCCTTGGGTGGCTCCGACCCCTGGA +
Preference number: 6 (lower is better)
Translates to: TVEARSSEAALE*WSCPWVAPTPG
Trigger: TCCAGGGGTCGGAGCCACCCAAGGACAAGACCATCATTCTAGAGCAGCTTCGGAAGATCTCGCTTCCACTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS TCA 72 bp GGCGCTGGCCATGATCATGCCGAGGATAGTGAGAGCTaGCAGGATGCTATACAGTGGAAGCGAGATCTTCCG +
Preference number: 6 (lower is better)
Translates to: GAGHDHAEDSES*QDAIQWKRDLP
Trigger: CGGAAGATCTCGCTTCCACTGTATAGCATCCTGTCAGCTCTCACTATCCTCGGCATGATCATGGCCAGCGCC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS TCA 72 bp CAAACATGGCTCCAAAGGCGGTTGTGTAGCCCACGGTaGGAATCCAGGTCCGGACCGTGCAGAGTGTTTCAA +
Preference number: 6 (lower is better)
Translates to: QTWLQRRLCSPR*ESRSGPCRVFQ
Trigger: TTGAAACACTCTGCACGGTCCGGACCTGGATTCTCACCGTGGGCTACACAACCGCCTTTGGAGCCATGTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 72 bp ATGGGTACTTCTTCTTATCCGCAAGAACAGGCGTGGTaGCGGCGAAGGAAAGCTGCACCAGGTTCCAGCCTT +
Preference number: 6 (lower is better)
Translates to: MGTSSYPQEQAW*RRRKAAPGSSL
Trigger: AAGGCTGGAACCTGGTGCAGCTTTCCTTCGCCGCCACCACGCCTGTTCTTGCGGATAAGAAGAAGTACCCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 72 bp CCCAGATGCCATCGTAGGCATACCCATGGAACTTGCTaGGCCCTACACCCGAACGCTTGCTGTTGTATTCTC +
Preference number: 6 (lower is better)
Translates to: PRCHRRHTHGTC*ALHPNACCCIL
Trigger: GAGAATACAACAGCAAGCGTTCGGGTGTAGGGCCCAGCAAGTTCCATGGGTATGCCTACGATGGCATCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 72 bp TTGGGTGGCTCCGACCCCTGGAACCTTATGGTGTCGTaGATGATCTCCAGTGTGTCAGCCACAGCGTTGTAC +
Preference number: 6 (lower is better)
Translates to: LGGSDPWNLMVS*MISSVSATALY
Trigger: GTACAACGCTGTGGCTGACACACTGGAGATCATCAACGACACCATAAGGTTCCAGGGGTCGGAGCCACCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS TCA 72 bp GCTGGTGCAGGGATCATTGGAGAAGCTCTCCGTGTCTaGGATCTCAATGTCTTCCCCGTACAGAACCCCAGT +
Preference number: 6 (lower is better)
Translates to: AGAGIIGEALRV*DLNVFPVQNPS
Trigger: ACTGGGGTTCTGTACGGGGAAGACATTGAGATCTCAGACACGGAGAGCTTCTCCAATGATCCCTGCACCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS TCA 72 bp GGAGTTGATGTCCTCTATGGGGTCTTTGCATGTTCTTaGGGGCTCGGTCGTGTTCCACTGGAGCTGAGGGTT +
Preference number: 6 (lower is better)
Translates to: GVDVLYGVFACS*GLGRVPLELRV
Trigger: AACCCTCAGCTCCAGTGGAACACGACCGAGCCCTCAAGAACATGCAAAGACCCCATAGAGGACATCAACTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 72 bp AATATGGGTACTTCTTCTTATCCGCAAGAACAGGCGTaGTGGCGGCGAAGGAAAGCTGCACCAGGTTCCAGC +
Preference number: 6 (lower is better)
Translates to: NMGTSSYPQEQA*WRRRKAAPGSS
Trigger: GCTGGAACCTGGTGCAGCTTTCCTTCGCCGCCACCACGCCTGTTCTTGCGGATAAGAAGAAGTACCCATATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 72 bp CAACAGAAGACTTTCGCTGCCATGTTCTGGTCAAACTaGCCAAGGATGATCCGCACGTCGTTCCCCTTGAGC +
Preference number: 6 (lower is better)
Translates to: QQKTFAAMFWSN*PRMIRTSFPLS
Trigger: GCTCAAGGGGAACGACGTGCGGATCATCCTTGGCCAGTTTGACCAGAACATGGCAGCGAAAGTCTTCTGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 72 bp TCTTTGTCCAGCTCTGTGATCTTCATTCGTAGGCGGTaGTTTTCTGACTGCAGTCCCTCCAGGCGTGACGTG +
Preference number: 6 (lower is better)
Translates to: SLSSSVIFIRRR*FSDCSPSRRDV
Trigger: CACGTCACGCCTGGAGGGACTGCAGTCAGAAAACCACCGCCTACGAATGAAGATCACAGAGCTGGACAAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 72 bp ATCTTCCGAAGCTGCTCTAGAATGATGGTCTTGTCCTaGGGTGGCTCCGACCCCTGGAACCTTATGGTGTCG +
Preference number: 6 (lower is better)
Translates to: IFRSCSRMMVLS*GGSDPWNLMVS
Trigger: CGACACCATAAGGTTCCAGGGGTCGGAGCCACCCAAGGACAAGACCATCATTCTAGAGCAGCTTCGGAAGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 72 bp AGCGAGATCTTCCGAAGCTGCTCTAGAATGATGGTCTaGTCCTTGGGTGGCTCCGACCCCTGGAACCTTATG +
Preference number: 6 (lower is better)
Translates to: SEIFRSCSRMMV*SLGGSDPWNLM
Trigger: CATAAGGTTCCAGGGGTCGGAGCCACCCAAGGACAAGACCATCATTCTAGAGCAGCTTCGGAAGATCTCGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 72 bp GAGACGGCGGCCCCGATGATGCACATGATCCCCACATaGTACACACTCATCCCAATGTACTTGCTGTCGTTG +
Preference number: 6 (lower is better)
Translates to: ETAAPMMHMIPT*YTLIPMYLLSL
Trigger: CAACGACAGCAAGTACATTGGGATGAGTGTGTACAATGTGGGGATCATGTGCATCATCGGGGCCGCCGTCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000107749.4
ENSMUST00000205643.2
CDS CAA 72 bp ATGTGCTCTGGGGAGTTGATGTCCTCTATGGGGTCTTaGCATGTTCTTGAGGGCTCGGTCGTGTTCCACTGG +
Preference number: 6 (lower is better)
Translates to: MCSGELMSSMGS*HVLEGSVVFHW
Trigger: CCAGTGGAACACGACCGAGCCCTCAAGAACATGCAAAGACCCCATAGAGGACATCAACTCCCCAGAGCACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 90 bp GGAAGCGAGATCTTCCGAAGCTGCTCTAGAATGATGGTCTTGTCCTaGGGTGGCTCCGACCCCTGGAACCTTATGGTGTCGTTGATGATC +
Preference number: 6 (lower is better)
Translates to: GSEIFRSCSRMMVLS*GGSDPWNLMVSLMI
Trigger: GATCATCAACGACACCATAAGGTTCCAGGGGTCGGAGCCACCCAAGGACAAGACCATCATTCTAGAGCAGCTTCGGAAGATCTCGCTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 90 bp TACAGTGGAAGCGAGATCTTCCGAAGCTGCTCTAGAATGATGGTCTaGTCCTTGGGTGGCTCCGACCCCTGGAACCTTATGGTGTCGTTG +
Preference number: 6 (lower is better)
Translates to: YSGSEIFRSCSRMMV*SLGGSDPWNLMVSL
Trigger: CAACGACACCATAAGGTTCCAGGGGTCGGAGCCACCCAAGGACAAGACCATCATTCTAGAGCAGCTTCGGAAGATCTCGCTTCCACTGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS TCA 72 bp CATTGTACACACTCATCCCAATGTACTTGCTGTCGTTaGGGGCAGGGATGCTCACGTTGCGGGTTTCCCATG +
Preference number: 6 (lower is better)
Translates to: HCTHSSQCTCCR*GQGCSRCGFPM
Trigger: CATGGGAAACCCGCAACGTGAGCATCCCTGCCCTCAACGACAGCAAGTACATTGGGATGAGTGTGTACAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107749.4
ENSMUST00000205643.2
CDS CAA 90 bp CTCATCCCAATGTACTTGCTGTCGTTGAGGGCAGGGATGCTCACGTaGCGGGTTTCCCATGCTAAGAAACAACCGAACAACATGAGGAGC +
Preference number: 6 (lower is better)
Translates to: LIPMYLLSLRAGMLT*RVSHAKKQPNNMRS
Trigger: GCTCCTCATGTTGTTCGGTTGTTTCTTAGCATGGGAAACCCGCAACGTGAGCATCCCTGCCCTCAACGACAGCAAGTACATTGGGATGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 90 bp CTCATCCCAATGTACTTGCTGTCGTTGAGGGCAGGGATGCTCACGTaGCGGGTTTCCCATGCTAAGAAACAACCGAACAACTCCATGCTG +
Preference number: 6 (lower is better)
Translates to: LIPMYLLSLRAGMLT*RVSHAKKQPNNSML
Trigger: CAGCATGGAGTTGTTCGGTTGTTTCTTAGCATGGGAAACCCGCAACGTGAGCATCCCTGCCCTCAACGACAGCAAGTACATTGGGATGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000205643.2
CDS TCA 72 bp TTCTTCTGGTTCTGTGTGAACTGGAATCGCCTGTTCTaGGTGGCTGCGTCAGGGTTTGTCCTCAGAGTGATG +
Preference number: 6 (lower is better)
Translates to: FFWFCVNWNRLF*VAASGFVLRVM
Trigger: CATCACTCTGAGGACAAACCCTGACGCAGCCACTCAGAACAGGCGATTCCAGTTCACACAGAACCAGAAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107749.4
ENSMUST00000205643.2
CDS GCA 72 bp AGGATGCTATACAGTGGAAGCGAGATCTTCCGAAGCTaGTCTAGAATGATGGTCTTGTCCTTGGGTGGCTCC +
Preference number: 6 (lower is better)
Translates to: RMLYSGSEIFRS*SRMMVLSLGGS
Trigger: GGAGCCACCCAAGGACAAGACCATCATTCTAGAGCAGCTTCGGAAGATCTCGCTTCCACTGTATAGCATCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CCA 72 bp TCAAAGGCACAACAGAAGACTTTCGCTGCCATGTTCTaGTCAAACTGGCCAAGGATGATCCGCACGTCGTTC +
Preference number: 6 (lower is better)
Translates to: SKAQQKTFAAMF*SNWPRMIRTSF
Trigger: GAACGACGTGCGGATCATCCTTGGCCAGTTTGACCAGAACATGGCAGCGAAAGTCTTCTGTTGTGCCTTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 72 bp TACCCATGGAACTTGCTGGGCCCTACACCCGAACGCTaGCTGTTGTATTCTCTTTCGTATTGCTGTGGAGTC +
Preference number: 6 (lower is better)
Translates to: YPWNLLGPTPER*LLYSLSYCCGV
Trigger: GACTCCACAGCAATACGAAAGAGAATACAACAGCAAGCGTTCGGGTGTAGGGCCCAGCAAGTTCCATGGGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 72 bp ATGTACTTGCTGTCGTTGAGGGCAGGGATGCTCACGTaGCGGGTTTCCCATGCTAAGAAACAACCGAACAAC +
Preference number: 6 (lower is better)
Translates to: MYLLSLRAGMLT*RVSHAKKQPNN
Trigger: GTTGTTCGGTTGTTTCTTAGCATGGGAAACCCGCAACGTGAGCATCCCTGCCCTCAACGACAGCAAGTACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107749.4
ENSMUST00000205643.2
CDS CAA 72 bp ACATTGTACACACTCATCCCAATGTACTTGCTGTCGTaGAGGGCAGGGATGCTCACGTTGCGGGTTTCCCAT +
Preference number: 6 (lower is better)
Translates to: TLYTLIPMYLLS*RAGMLTLRVSH
Trigger: ATGGGAAACCCGCAACGTGAGCATCCCTGCCCTCAACGACAGCAAGTACATTGGGATGAGTGTGTACAATGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107749.4
ENSMUST00000205643.2
CDS CAA 90 bp GGTTCGGCCCATACTTTATTGCATCATAGAAGGCTTTCAGTCCCTTaGCATTGTCACACTCGGTGTCGTAGAGTCGCAGGTCCAGGAAGT +
Preference number: 6 (lower is better)
Translates to: GSAHTLLHHRRLSVP*HCHTRCRRVAGPGS
Trigger: ACTTCCTGGACCTGCGACTCTACGACACCGAGTGTGACAATGCAAAGGGACTGAAAGCCTTCTATGATGCAATAAAGTATGGGCCGAACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 90 bp ATGATCCCCACATTGTACACACTCATCCCAATGTACTTGCTGTCGTaGAGGGCAGGGATGCTCACGTTGCGGGTTTCCCATGCTAAGAAA +
Preference number: 6 (lower is better)
Translates to: MIPTLYTLIPMYLLS*RAGMLTLRVSHAKK
Trigger: TTTCTTAGCATGGGAAACCCGCAACGTGAGCATCCCTGCCCTCAACGACAGCAAGTACATTGGGATGAGTGTGTACAATGTGGGGATCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000107749.4
ENSMUST00000205643.2
CDS TCA 72 bp TTTCGTATTGCTGTGGAGTCTTCCCTGAGATGGTCTTaGTTTGTTTGGAGCTCAGGGGCTCGAAGTCCACTC +
Preference number: 6 (lower is better)
Translates to: FRIAVESSLRWS*FVWSSGARSPL
Trigger: GAGTGGACTTCGAGCCCCTGAGCTCCAAACAAATCAAGACCATCTCAGGGAAGACTCCACAGCAATACGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS TCA 72 bp ATGGTTCCCATTCTTTCCCCGTTCCGGAACACAACTTaGCCCGTGACTCCGAAGAAGTTGGTTTCGTTCATG +
Preference number: 6 (lower is better)
Translates to: MVPILSPFRNTT*PVTPKKLVSFM
Trigger: CATGAACGAAACCAACTTCTTCGGAGTCACGGGTCAAGTTGTGTTCCGGAACGGGGAAAGAATGGGAACCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS TCA 72 bp GGTCCGGACCGTGCAGAGTGTTTCAAAGGTCTTTTCTaGGACGAAGGATCCATCGAGACCAAAGAGGAAGAT +
Preference number: 6 (lower is better)
Translates to: GPDRAECFKGLF*DEGSIETKEED
Trigger: ATCTTCCTCTTTGGTCTCGATGGATCCTTCGTCTCAGAAAAGACCTTTGAAACACTCTGCACGGTCCGGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS TCA 72 bp TGGAGGTCTTCGAATCTTCTTTCTTCTGGTTCTGTGTaGACTGGAATCGCCTGTTCTGAGTGGCTGCGTCAG +
Preference number: 6 (lower is better)
Translates to: WRSSNLLSSGSV*TGIACSEWLRQ
Trigger: CTGACGCAGCCACTCAGAACAGGCGATTCCAGTTCACACAGAACCAGAAGAAAGAAGATTCGAAGACCTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000107749.4
ENSMUST00000205643.2
CDS CAA 72 bp TTCCCCTTGAGCTTTTTGACGCTGGTGCAGGGATCATaGGAGAAGCTCTCCGTGTCTGAGATCTCAATGTCT +
Preference number: 6 (lower is better)
Translates to: FPLSFLTLVQGS*EKLSVSEISMS
Trigger: AGACATTGAGATCTCAGACACGGAGAGCTTCTCCAATGATCCCTGCACCAGCGTCAAAAAGCTCAAGGGGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 72 bp CTTTCGTATTGCTGTGGAGTCTTCCCTGAGATGGTCTaGATTTGTTTGGAGCTCAGGGGCTCGAAGTCCACT +
Preference number: 6 (lower is better)
Translates to: LSYCCGVFPEMV*ICLELRGSKST
Trigger: AGTGGACTTCGAGCCCCTGAGCTCCAAACAAATCAAGACCATCTCAGGGAAGACTCCACAGCAATACGAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 72 bp GGGCTTGACATCTTGATCAGCTTTTGGTTCCGGTTCTaGATGTTGAAGAAGAGGAAGGCGCTGGCCATGATC +
Preference number: 6 (lower is better)
Translates to: GLDILISFWFRF*MLKKRKALAMI
Trigger: GATCATGGCCAGCGCCTTCCTCTTCTTCAACATCAAGAACCGGAACCAAAAGCTGATCAAGATGTCAAGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 72 bp AATGGTTCCCATTCTTTCCCCGTTCCGGAACACAACTaGACCCGTGACTCCGAAGAAGTTGGTTTCGTTCAT +
Preference number: 6 (lower is better)
Translates to: NGSHSFPVPEHN*TRDSEEVGFVH
Trigger: ATGAACGAAACCAACTTCTTCGGAGTCACGGGTCAAGTTGTGTTCCGGAACGGGGAAAGAATGGGAACCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 90 bp GACAGACGCCTCCAAACACCATCAAATGGTTCGGCCCATACTTTATaGCATCATAGAAGGCTTTCAGTCCCTTTGCATTGTCACACTCGG +
Preference number: 6 (lower is better)
Translates to: DRRLQTPSNGSAHTL*HHRRLSVPLHCHTR
Trigger: CCGAGTGTGACAATGCAAAGGGACTGAAAGCCTTCTATGATGCAATAAAGTATGGGCCGAACCATTTGATGGTGTTTGGAGGCGTCTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 90 bp TGTGCTCTCTGTGAAGTTGCCCAAGCTGAGGATGTCGTTGAGCTCTaGGTAGTGATTCTGTTTGATGTATGTGGTCTTCTCTGGTGTGTC +
Preference number: 6 (lower is better)
Translates to: CALCEVAQAEDVVEL*VVILFDVCGLLWCV
Trigger: GACACACCAGAGAAGACCACATACATCAAACAGAATCACTACCAAGAGCTCAACGACATCCTCAGCTTGGGCAACTTCACAGAGAGCACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS TCA 72 bp CCCACCCAGGATGATGAGGTTGTTCATATAGGGGCTTaGCATCTTGATCAGCTTTTGGTTCCGGTTCTTGAT +
Preference number: 6 (lower is better)
Translates to: PTQDDEVVHIGA*HLDQLLVPVLD
Trigger: ATCAAGAACCGGAACCAAAAGCTGATCAAGATGTCAAGCCCCTATATGAACAACCTCATCATCCTGGGTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS GCA 72 bp ATACTTTATTGCATCATAGAAGGCTTTCAGTCCCTTTaGATTGTCACACTCGGTGTCGTAGAGTCGCAGGTC +
Preference number: 6 (lower is better)
Translates to: ILYCIIEGFQSL*IVTLGVVESQV
Trigger: GACCTGCGACTCTACGACACCGAGTGTGACAATGCAAAGGGACTGAAAGCCTTCTATGATGCAATAAAGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS GCA 72 bp ACACCCGAACGCTTGCTGTTGTATTCTCTTTCGTATTaGTGTGGAGTCTTCCCTGAGATGGTCTTGATTTGT +
Preference number: 6 (lower is better)
Translates to: TPERLLLYSLSY*CGVFPEMVLIC
Trigger: ACAAATCAAGACCATCTCAGGGAAGACTCCACAGCAATACGAAAGAGAATACAACAGCAAGCGTTCGGGTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 72 bp CATACTTTATTGCATCATAGAAGGCTTTCAGTCCCTTaGCATTGTCACACTCGGTGTCGTAGAGTCGCAGGT +
Preference number: 6 (lower is better)
Translates to: HTLLHHRRLSVP*HCHTRCRRVAG
Trigger: ACCTGCGACTCTACGACACCGAGTGTGACAATGCAAAGGGACTGAAAGCCTTCTATGATGCAATAAAGTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 72 bp TGTGAAGTTGCCCAAGCTGAGGATGTCGTTGAGCTCTaGGTAGTGATTCTGTTTGATGTATGTGGTCTTCTC +
Preference number: 6 (lower is better)
Translates to: CEVAQAEDVVEL*VVILFDVCGLL
Trigger: GAGAAGACCACATACATCAAACAGAATCACTACCAAGAGCTCAACGACATCCTCAGCTTGGGCAACTTCACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS GCA 72 bp TCCAAACACCATCAAATGGTTCGGCCCATACTTTATTaGATCATAGAAGGCTTTCAGTCCCTTTGCATTGTC +
Preference number: 6 (lower is better)
Translates to: SKHHQMVRPILY*IIEGFQSLCIV
Trigger: GACAATGCAAAGGGACTGAAAGCCTTCTATGATGCAATAAAGTATGGGCCGAACCATTTGATGGTGTTTGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4
CDS CAA 72 bp CTCCAAACACCATCAAATGGTTCGGCCCATACTTTATaGCATCATAGAAGGCTTTCAGTCCCTTTGCATTGT +
Preference number: 6 (lower is better)
Translates to: LQTPSNGSAHTL*HHRRLSVPLHC
Trigger: ACAATGCAAAGGGACTGAAAGCCTTCTATGATGCAATAAAGTATGGGCCGAACCATTTGATGGTGTTTGGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000107749.4