RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GABBR1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024462

Ensembl transcript IDs: ENSMUST00000025338.16, ENSMUST00000172789.2, ENSMUST00000172792.8, ENSMUST00000173823.8, ENSMUST00000174347.2, ENSMUST00000174456.8

Found 401 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TGCTCAGCCACCTACTCCAGGCTCCCAGAGCATGCCCACCACTGCTaGGGAATCCAGGAGGCAACAGTAACAGAGGCTACTACCATGGAC +
Preference number: 1 (lower is better)
Translates to: CSATYSRLPEHAHHC*GIQEATVTEATTMD
Trigger: GTCCATGGTAGTAGCCTCTGTTACTGTTGCCTCCTGGATTCCCCAGCAGTGGTGGGCATGCTCTGGGAGCCTGGAGTAGGTGGCTGAGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR GCA 90 bp ATCTGCTCAGCCACCTACTCCAGGCTCCCAGAGCATGCCCACCACTaGTGGGGAATCCAGGAGGCAACAGTAACAGAGGCTACTACCATG +
Preference number: 1 (lower is better)
Translates to: ICSATYSRLPEHAHH*WGIQEATVTEATTM
Trigger: CATGGTAGTAGCCTCTGTTACTGTTGCCTCCTGGATTCCCCAGCAGTGGTGGGCATGCTCTGGGAGCCTGGAGTAGGTGGCTGAGCAGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR CCA 90 bp GAGAACACAATGGCCAGAGAGGCAAAGGCGAAGGCTGCGTCCTGCTaGCTGGAAAGGATCATGGTGACAGGAGCGGTAATGAGACACAGG +
Preference number: 1 (lower is better)
Translates to: ENTMAREAKAKAASC*LERIMVTGAVMRHR
Trigger: CCTGTGTCTCATTACCGCTCCTGTCACCATGATCCTTTCCAGCCAGCAGGACGCAGCCTTCGCCTTTGCCTCTCTGGCCATTGTGTTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR GCA 90 bp CTTGGTGTGCTCAACACATCATGCACGCCTACCCAAGCACACCACTaGACACACCCACAACCACTGTGCACTCACAGGTGCAGCATATGC +
Preference number: 1 (lower is better)
Translates to: LGVLNTSCTPTQAHH*THPQPLCTHRCSIC
Trigger: GCATATGCTGCACCTGTGAGTGCACAGTGGTTGTGGGTGTGTGCAGTGGTGTGCTTGGGTAGGCGTGCATGATGTGTTGAGCACACCAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR GCA 90 bp GCAAGGGGTCCACAATCTGCCAGATGGCAAGAGTCAGGATATCCATaGCCACCAGCAGGCCTACAGTGGCGTACAGTTTCCAAGGCTCTA +
Preference number: 1 (lower is better)
Translates to: ARGPQSARWQESGYP*PPAGLQWRTVSKAL
Trigger: TAGAGCCTTGGAAACTGTACGCCACTGTAGGCCTGCTGGTGGGCATGGATATCCTGACTCTTGCCATCTGGCAGATTGTGGACCCCTTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR GCA 90 bp GAAGAGAACACAATGGCCAGAGAGGCAAAGGCGAAGGCTGCGTCCTaGTGGCTGGAAAGGATCATGGTGACAGGAGCGGTAATGAGACAC +
Preference number: 1 (lower is better)
Translates to: EENTMAREAKAKAAS*WLERIMVTGAVMRH
Trigger: GTGTCTCATTACCGCTCCTGTCACCATGATCCTTTCCAGCCAGCAGGACGCAGCCTTCGCCTTTGCCTCTCTGGCCATTGTGTTCTCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 90 bp AGCCCCACTTTTCGAAGAGTTTCACCCGGGTGGGATTGTGGAGTGTaGCGGATGGATGTGTCCGAAAGAACGTTGGAAACCGCTGTCGGT +
Preference number: 1 (lower is better)
Translates to: SPTFRRVSPGWDCGV*RMDVSERTLETAVG
Trigger: ACCGACAGCGGTTTCCAACGTTCTTTCGGACACATCCATCCGCCACACTCCACAATCCCACCCGGGTGAAACTCTTCGAAAAGTGGGGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 90 bp CTTGTTCAAGGCCAAAGCCAAGGCCCAGATAGCATCATAGGCCAGTaGTGCCTCCTGGAAGCCTCCAGTCTCCTCAGGGTGTCTTTTCAG +
Preference number: 1 (lower is better)
Translates to: LVQGQSQGPDSIIGQ*CLLEASSLLRVSFQ
Trigger: CTGAAAAGACACCCTGAGGAGACTGGAGGCTTCCAGGAGGCACCACTGGCCTATGATGCTATCTGGGCCTTGGCTTTGGCCTTGAACAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR TCA 90 bp GATGCTGCCTCCCGCCCGGTCAGTCCATCTGTCCATGCCTTCATTTaGTCAAATGTGCACCCACTATCCACTGGAAACAGCCTCCAACCT +
Preference number: 1 (lower is better)
Translates to: DAASRPVSPSVHAFI*SNVHPLSTGNSLQP
Trigger: AGGTTGGAGGCTGTTTCCAGTGGATAGTGGGTGCACATTTGATCAAATGAAGGCATGGACAGATGGACTGACCGGGCGGGAGGCAGCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR GCA 90 bp CGCTCCTCCAGGTCATCCAGTGTTGAGGTGAAGACCTCGGTAGTCTaGTGGATGGTGGCAATCTTCTTCCAGCCCCACTTTTCGAAGAGT +
Preference number: 1 (lower is better)
Translates to: RSSRSSSVEVKTSVV*WMVAIFFQPHFSKS
Trigger: ACTCTTCGAAAAGTGGGGCTGGAAGAAGATTGCCACCATCCAGCAGACTACCGAGGTCTTCACCTCAACACTGGATGACCTGGAGGAGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR GCA 90 bp TCCTTGGCAAAAGTCTCAATGGTTCGGTGCAAGGGGTCCACAATCTaGCAGATGGCAAGAGTCAGGATATCCATGCCCACCAGCAGGCCT +
Preference number: 1 (lower is better)
Translates to: SLAKVSMVRCKGSTI*QMARVRISMPTSRP
Trigger: AGGCCTGCTGGTGGGCATGGATATCCTGACTCTTGCCATCTGGCAGATTGTGGACCCCTTGCACCGAACCATTGAGACTTTTGCCAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 90 bp TTCTTCCAGCCCCACTTTTCGAAGAGTTTCACCCGGGTGGGATTGTaGAGTGTGGCGGATGGATGTGTCCGAAAGAACGTTGGAAACCGC +
Preference number: 1 (lower is better)
Translates to: FFQPHFSKSFTRVGL*SVADGCVRKNVGNR
Trigger: GCGGTTTCCAACGTTCTTTCGGACACATCCATCCGCCACACTCCACAATCCCACCCGGGTGAAACTCTTCGAAAAGTGGGGCTGGAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR GCA 90 bp CCCGCCCGGTCAGTCCATCTGTCCATGCCTTCATTTGATCAAATGTaGACCCACTATCCACTGGAAACAGCCTCCAACCTGTCCCCATTT +
Preference number: 1 (lower is better)
Translates to: PARSVHLSMPSFDQM*THYPLETASNLSPF
Trigger: AAATGGGGACAGGTTGGAGGCTGTTTCCAGTGGATAGTGGGTGCACATTTGATCAAATGAAGGCATGGACAGATGGACTGACCGGGCGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR GCA 90 bp AATGTAGGAAGAGAACACAATGGCCAGAGAGGCAAAGGCGAAGGCTaGGTCCTGCTGGCTGGAAAGGATCATGGTGACAGGAGCGGTAAT +
Preference number: 1 (lower is better)
Translates to: NVGREHNGQRGKGEG*VLLAGKDHGDRSGN
Trigger: ATTACCGCTCCTGTCACCATGATCCTTTCCAGCCAGCAGGACGCAGCCTTCGCCTTTGCCTCTCTGGCCATTGTGTTCTCTTCCTACATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 90 bp TGGCAATCTTCTTCCAGCCCCACTTTTCGAAGAGTTTCACCCGGGTaGGATTGTGGAGTGTGGCGGATGGATGTGTCCGAAAGAACGTTG +
Preference number: 1 (lower is better)
Translates to: WQSSSSPTFRRVSPG*DCGVWRMDVSERTL
Trigger: CAACGTTCTTTCGGACACATCCATCCGCCACACTCCACAATCCCACCCGGGTGAAACTCTTCGAAAAGTGGGGCTGGAAGAAGATTGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 90 bp AGATGGCAAGAGTCAGGATATCCATGCCCACCAGCAGGCCTACAGTaGCGTACAGTTTCCAAGGCTCTAGGGTCTTCCTCCATTCCTTCT +
Preference number: 1 (lower is better)
Translates to: RWQESGYPCPPAGLQ*RTVSKALGSSSIPS
Trigger: AGAAGGAATGGAGGAAGACCCTAGAGCCTTGGAAACTGTACGCCACTGTAGGCCTGCTGGTGGGCATGGATATCCTGACTCTTGCCATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 90 bp CCTCTCTGCTTCAAAGCCTTTTCATTAACTCCAATCTTGAGAGCCTaGGCTTCTCGCTTCCTGGAGCCCACTCAGTTCACAGGACAGTGG +
Preference number: 1 (lower is better)
Translates to: PLCFKAFSLTPILRA*ASRFLEPTQFTGQW
Trigger: CCACTGTCCTGTGAACTGAGTGGGCTCCAGGAAGCGAGAAGCCCAGGCTCTCAAGATTGGAGTTAATGAAAAGGCTTTGAAGCAGAGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR CCA 90 bp TCCTCCAGGTCATCCAGTGTTGAGGTGAAGACCTCGGTAGTCTGCTaGATGGTGGCAATCTTCTTCCAGCCCCACTTTTCGAAGAGTTTC +
Preference number: 1 (lower is better)
Translates to: SSRSSSVEVKTSVVC*MVAIFFQPHFSKSF
Trigger: GAAACTCTTCGAAAAGTGGGGCTGGAAGAAGATTGCCACCATCCAGCAGACTACCGAGGTCTTCACCTCAACACTGGATGACCTGGAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR GCA 90 bp CAGACAACTGTAATCCCAATACTCAGAAGGCTGAGACAGGAAGCCTaGCCTGACACGAGTCAGGGCAACACACACACACACTACATAGTG +
Preference number: 1 (lower is better)
Translates to: QTTVIPILRRLRQEA*PDTSQGNTHTHYIV
Trigger: CACTATGTAGTGTGTGTGTGTGTTGCCCTGACTCGTGTCAGGGCAGGCTTCCTGTCTCAGCCTTCTGAGTATTGGGATTACAGTTGTCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR GCA 90 bp ACTAATCGAGCCCTTCATCTCATCCCGCTCTGCCCCACTAATCCCTaGATGGAACAATCACACAGCTCTTTGCACCTCTCTGCTTCAAAG +
Preference number: 1 (lower is better)
Translates to: TNRALHLIPLCPTNP*MEQSHSSLHLSASK
Trigger: CTTTGAAGCAGAGAGGTGCAAAGAGCTGTGTGATTGTTCCATGCAGGGATTAGTGGGGCAGAGCGGGATGAGATGAAGGGCTCGATTAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR GCA 90 bp CTAATGCCATCACTCACTAATCGAGCCCTTCATCTCATCCCGCTCTaGCCCACTAATCCCTGCATGGAACAATCACACAGCTCTTTGCAC +
Preference number: 1 (lower is better)
Translates to: LMPSLTNRALHLIPL*PTNPCMEQSHSSLH
Trigger: GTGCAAAGAGCTGTGTGATTGTTCCATGCAGGGATTAGTGGGGCAGAGCGGGATGAGATGAAGGGCTCGATTAGTGAGTGATGGCATTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR CCA 90 bp CTTCGGGTGTTGGCAGGGTTCAGCATGACAATCTCCGTGGTGATATaGCCCTCCACCGCCTCAGTCATCTCTTCTACTGTACAATTGATT +
Preference number: 1 (lower is better)
Translates to: LRVLAGFSMTISVVI*PSTASVISSTVQLI
Trigger: AATCAATTGTACAGTAGAAGAGATGACTGAGGCGGTGGAGGGCCATATCACCACGGAGATTGTCATGCTGAACCCTGCCAACACCCGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 90 bp ATGCCGAGCCATGTATTCATCTTCTTGGAGCTGCAGTGCTCCAGCTaGGGCAGAATGGAGACATCAATGTCTTCCTTTGGTTCCTCCTTG +
Preference number: 1 (lower is better)
Translates to: MPSHVFIFLELQCSS*GRMETSMSSFGSSL
Trigger: CAAGGAGGAACCAAAGGAAGACATTGATGTCTCCATTCTGCCCCAGCTGGAGCACTGCAGCTCCAAGAAGATGAATACATGGCTCGGCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR TCA 90 bp CGCTTCCTGGAGCCCACTCAGTTCACAGGACAGTGGATGAGGTGCTaGGTCACACTGTTAACTGCTTTATTGAGATTCAGGGAGATCCTT +
Preference number: 1 (lower is better)
Translates to: RFLEPTQFTGQWMRC*VTLLTALLRFREIL
Trigger: AAGGATCTCCCTGAATCTCAATAAAGCAGTTAACAGTGTGACTCAGCACCTCATCCACTGTCCTGTGAACTGAGTGGGCTCCAGGAAGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR CCA 90 bp CCTCCTGGAAGCCTCCAGTCTCCTCAGGGTGTCTTTTCAGCCGCTTaGTTAGTTTCTCCACAAATTCCTGTGATGTCATGTTGGAAATGC +
Preference number: 1 (lower is better)
Translates to: PPGSLQSPQGVFSAA*LVSPQIPVMSCWKC
Trigger: GCATTTCCAACATGACATCACAGGAATTTGTGGAGAAACTAACCAAGCGGCTGAAAAGACACCCTGAGGAGACTGGAGGCTTCCAGGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR TCA 90 bp ATGGCCCTCCACCGCCTCAGTCATCTCTTCTACTGTACAATTGATTaGCGGGTCATAGGTTTTGAACCAGTTGTCAGCATACCACCCGAT +
Preference number: 1 (lower is better)
Translates to: MALHRLSHLFYCTID*RVIGFEPVVSIPPD
Trigger: ATCGGGTGGTATGCTGACAACTGGTTCAAAACCTATGACCCGTCAATCAATTGTACAGTAGAAGAGATGACTGAGGCGGTGGAGGGCCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 90 bp TATTTGCACAGAAACACATCCAGCTGCCTAGGAGAGGAGAGGATATaGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG +
Preference number: 1 (lower is better)
Translates to: YLHRNTSSCLGEERI*CVCVCVCVCVCVCV
Trigger: CACACACACACACACACACACACACACACACACACACACACACCATATCCTCTCCTCTCCTAGGCAGCTGGATGTGTTTCTGTGCAAATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR CCA 90 bp AGGGAACACTTGAGAGTAAACCTAAGGCCAAGGAGAGGGTATGCATaGCTCAGAAAACACGTACTGGGGAAGAGCCTGCTTAATCATGTG +
Preference number: 1 (lower is better)
Translates to: REHLRVNLRPRRGYA*LRKHVLGKSLLNHV
Trigger: CACATGATTAAGCAGGCTCTTCCCCAGTACGTGTTTTCTGAGCCATGCATACCCTCTCCTTGGCCTTAGGTTTACTCTCAAGTGTTCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR TCA 90 bp GTTCTGAGGCGCTTATTCCAGAACCTGGCACTCATTGTTTGCTTGTaGTTCTTCCTGTCTGATGAGGAGGAGACTCTTCACATCTGCTCA +
Preference number: 1 (lower is better)
Translates to: VLRRLFQNLALIVCL*FFLSDEEETLHICS
Trigger: TGAGCAGATGTGAAGAGTCTCCTCCTCATCAGACAGGAAGAATCACAAGCAAACAATGAGTGCCAGGTTCTGGAATAAGCGCCTCAGAAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR TCA 90 bp CTTCTCCAACAGTCGGGACTTCTCTTCCTCATTGTTGTTGGTGGATaGTCCTGTTTTCATTGTGTCCTGTGCTTCAGACTGCCATTCACC +
Preference number: 1 (lower is better)
Translates to: LLQQSGLLFLIVVGG*SCFHCVLCFRLPFT
Trigger: GGTGAATGGCAGTCTGAAGCACAGGACACAATGAAAACAGGATCATCCACCAACAACAATGAGGAAGAGAAGTCCCGACTGTTGGAGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR GCA 90 bp TGTAACCATAGAAAATGCCGAGCCATGTATTCATCTTCTTGGAGCTaGAGTGCTCCAGCTGGGGCAGAATGGAGACATCAATGTCTTCCT +
Preference number: 1 (lower is better)
Translates to: CNHRKCRAMYSSSWS*SAPAGAEWRHQCLP
Trigger: AGGAAGACATTGATGTCTCCATTCTGCCCCAGCTGGAGCACTGCAGCTCCAAGAAGATGAATACATGGCTCGGCATTTTCTATGGTTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR GCA 90 bp TTGTTGGTGGATGATCCTGTTTTCATTGTGTCCTGTGCTTCAGACTaGCATTCACCTCGAGTGATCAACCTGCGCATCTTAGGCACAAAG +
Preference number: 1 (lower is better)
Translates to: LLVDDPVFIVSCASD*HSPRVINLRILGTK
Trigger: CTTTGTGCCTAAGATGCGCAGGTTGATCACTCGAGGTGAATGGCAGTCTGAAGCACAGGACACAATGAAAACAGGATCATCCACCAACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 90 bp GGTTTTCCTTCTCCAACAGTCGGGACTTCTCTTCCTCATTGTTGTTaGTGGATGATCCTGTTTTCATTGTGTCCTGTGCTTCAGACTGCC +
Preference number: 1 (lower is better)
Translates to: GFPSPTVGTSLPHCC*WMILFSLCPVLQTA
Trigger: GGCAGTCTGAAGCACAGGACACAATGAAAACAGGATCATCCACCAACAACAATGAGGAAGAGAAGTCCCGACTGTTGGAGAAGGAAAACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR TCA 90 bp ACCTGCCATAAACAGGACAGTGAAATGATAGGCCCATCCAACCCTTaGAGCTTCCATGCAGCAAGAGGGAAGAAGAACCACCTTAAAGAA +
Preference number: 1 (lower is better)
Translates to: TCHKQDSEMIGPSNP*SFHAARGKKNHLKE
Trigger: TTCTTTAAGGTGGTTCTTCTTCCCTCTTGCTGCATGGAAGCTTCAAGGGTTGGATGGGCCTATCATTTCACTGTCCTGTTTATGGCAGGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR TCA 90 bp TCGAGCATCTTGACGCTTCAGGTTTTTAACAGGCACAGCTGGATCTaGGAAGAAACTCTGTCGAAAAGTGATCTCAATCCCAGCCTCTTT +
Preference number: 1 (lower is better)
Translates to: SSILTLQVFNRHSWI*EETLSKSDLNPSLF
Trigger: AAAGAGGCTGGGATTGAGATCACTTTTCGACAGAGTTTCTTCTCAGATCCAGCTGTGCCTGTTAAAAACCTGAAGCGTCAAGATGCTCGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 90 bp ACATGGAGGAGAAGGATGATGGAAGGAGATTCTAATGCTGAGAAATaGAGAGAAAGCCCTGATAATGTAGGAAGACCCCTGCTGCTGAAA +
Preference number: 1 (lower is better)
Translates to: TWRRRMMEGDSNAEK*RESPDNVGRPLLLK
Trigger: TTTCAGCAGCAGGGGTCTTCCTACATTATCAGGGCTTTCTCTCCATTTCTCAGCATTAGAATCTCCTTCCATCATCCTTCTCCTCCATGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR TCA 90 bp AAATACACAATGCAAGGAGGCACACAAGTAAAACATAGACAACCATaGCATATGCACATGAGGAAGACAGCTTGGTGTGCTCAACACATC +
Preference number: 1 (lower is better)
Translates to: KYTMQGGTQVKHRQP*HMHMRKTAWCAQHI
Trigger: GATGTGTTGAGCACACCAAGCTGTCTTCCTCATGTGCATATGTCATGGTTGTCTATGTTTTACTTGTGTGCCTCCTTGCATTGTGTATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR TCA 90 bp ATGACAACAAAGAAAAGAAAACCAAGATGCAGTAGTTCTGAGAGATaGTTGTACAGACCCAAAGTGGGACGCATGAGAATAGAGGGAACA +
Preference number: 1 (lower is better)
Translates to: MTTKKRKPRCSSSER*LYRPKVGRMRIEGT
Trigger: TGTTCCCTCTATTCTCATGCGTCCCACTTTGGGTCTGTACAATCATCTCTCAGAACTACTGCATCTTGGTTTTCTTTTCTTTGTTGTCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR GCA 90 bp AAGCAGATCCAGGCATTGGGATGCATAATTAGCCTAGTTCTTGTGTaGACTCCACAGAGAAATGAATCATCATTATTGTTATCTATCATC +
Preference number: 1 (lower is better)
Translates to: KQIQALGCIISLVLV*TPQRNESSLLLSII
Trigger: GATGATAGATAACAATAATGATGATTCATTTCTCTGTGGAGTGCACACAAGAACTAGGCTAATTATGCATCCCAATGCCTGGATCTGCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR-3UTR TCA 90 bp CACATCATGCACGCCTACCCAAGCACACCACTGCACACACCCACAACCACTGTGCGTGTGGTGCAGGCCTaGCTCCAGAGCCCACACTTT +
Preference number: 2 (lower is better)
Translates to: HIMHAYPSTPLHTPTTTVRVVQA*LQSPHF
Trigger: AAAGTGTGGGCTCTGGAGTCAGGCCTGCACCACACG...CACAGTGGTTGTGGGTGTGTGCAGTGGTGTGCTTGGGTAGGCGTGCATGATGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR-3UTR GCA 90 bp CCACAATCTGCCAGATGGCAAGAGTCAGGATATCCATGCCCACCAGCAGGCCTACTCGATAAGCGTCCATaGCATCCGGGAGCCGCTGGC +
Preference number: 2 (lower is better)
Translates to: PQSARWQESGYPCPPAGLLDKRP*HPGAAG
Trigger: GCCAGCGGCTCCCGGATGGCATGGACGCTTATCGAG...TAGGCCTGCTGGTGGGCATGGATATCCTGACTCTTGCCATCTGGCAGATTGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR CCA 90 bp AACACATCATGCACGCCTACCCAAGCACACCACTGCACACACCCACAACCACTGCCTCGGCTACCAGTGTaGACACAGAGCTGCAGCCGG +
Preference number: 2 (lower is better)
Translates to: NTSCTPTQAHHCTHPQPLPRLPV*TQSCSR
Trigger: CCGGCTGCAGCTCTGTGTCCACACTGGTAGCCGAGG...CAGTGGTTGTGGGTGTGTGCAGTGGTGTGCTTGGGTAGGCGTGCATGATGTGTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR CCA 90 bp TGTAGCTGCTCGATAAGCGTCCATGCCATCCGGGAGCCGCTGGCATCAAAGACCAGAGTTTCACCCGGGTaGGATTGTGGAGTGTGGCGG +
Preference number: 2 (lower is better)
Translates to: CSCSISVHAIREPLASKTRVSPG*DCGVWR
Trigger: CCGCCACACTCCACAATCCCACCCGGGTGAAACTCT...GGTCTTTGATGCCAGCGGCTCCCGGATGGCATGGACGCTTATCGAGCAGCTACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR CCA 90 bp TGCTGGCTGGAAAGGATCATGGTGACAGGAGCGGTAATGAGACACAGGACCGCAGCCAGTGGTGCCTCCTaGAAGCCTCCAGTCTCCTCA +
Preference number: 2 (lower is better)
Translates to: CWLERIMVTGAVMRHRTAASGAS*KPPVSS
Trigger: TGAGGAGACTGGAGGCTTCCAGGAGGCACCACTGGC...TGCGGTCCTGTGTCTCATTACCGCTCCTGTCACCATGATCCTTTCCAGCCAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CAA 90 bp GGGTGGGATTGTGGAGTGTGGCGGATGGATGTGTCCGAAAGAACGTaGGAAACCGCTGTCGGTTTGACAAGGCTGGTGAGCTGGAGCCAT +
Preference number: 2 (lower is better)
Translates to: GWDCGVWRMDVSERT*ETAVGLTRLVSWSH
Trigger: ATGGCTCCAGCTCACCAGCCTTGTCAAACCGACAGCGGTTTCCAACGTTCTTTCGGACACATCCATCCGCCACACTCCACAATCCCACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR GCA 90 bp CCAATACTCAGAAGGCTGAGACAGGAAGCCTGCCCTGACACGAGTCAGGGCAACAAGTACTTGGTGGCTTaGCCTGGGTCGCACTTGCTG +
Preference number: 2 (lower is better)
Translates to: PILRRLRQEACPDTSQGNKYLVA*PGSHLL
Trigger: CAGCAAGTGCGACCCAGGGCAAGCCACCAAGTACTT...GTTGCCCTGACTCGTGTCAGGGCAGGCTTCCTGTCTCAGCCTTCTGAGTATTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR CCA 90 bp GGAGACTCTTCACATCTGCTCAGCCACCTACTCCAGGCTCCCAGAGCATGCCCACAGAGGCTACTACCATaGACCAAGCAGATCCAGGCA +
Preference number: 2 (lower is better)
Translates to: GDSSHLLSHLLQAPRACPQRLLP*TKQIQA
Trigger: TGCCTGGATCTGCTTGGTCCATGGTAGTAGCCTCTG...TGGGCATGCTCTGGGAGCCTGGAGTAGGTGGCTGAGCAGATGTGAAGAGTCTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR-3UTR TCA 90 bp AGATCCTTCCCCCAAGAGACACCACAGTGTGAAAGGGATGCTGCCTCCCGCCCGCATGACATATGCACATaGGGAAGACAGCTTGGTGTG +
Preference number: 2 (lower is better)
Translates to: RSFPQETPQCERDAASRPHDICT*GRQLGV
Trigger: CACACCAAGCTGTCTTCCTCATGTGCATATGTCATG...CGGGCGGGAGGCAGCATCCCTTTCACACTGTGGTGTCTCTTGGGGGAAGGATCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR-3UTR TCA 90 bp CACATCATGCACGCCTACCCAAGCACACCACTGCACACACCCACAACCACTGTGCGGCCCTGTGGTCATTaGTCTTTTCAGTGGACACAC +
Preference number: 2 (lower is better)
Translates to: HIMHAYPSTPLHTPTTTVRPCGH*SFQWTH
Trigger: GTGTGTCCACTGAAAAGATCAATGACCACAGGGCCG...CACAGTGGTTGTGGGTGTGTGCAGTGGTGTGCTTGGGTAGGCGTGCATGATGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR CCA 90 bp CACATCATGCACGCCTACCCAAGCACACCACTGCACACACCCACAACCACTGTGGCACCCACTATCCACTaGAAACAGCCTCCAACCTGT +
Preference number: 2 (lower is better)
Translates to: HIMHAYPSTPLHTPTTTVAPTIH*KQPPTC
Trigger: ACAGGTTGGAGGCTGTTTCCAGTGGATAGTGGGTGC...CACAGTGGTTGTGGGTGTGTGCAGTGGTGTGCTTGGGTAGGCGTGCATGATGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR-3UTR CCA 90 bp CACATCCAGCTGCCTAGGAGAGGAGAGGATATGGTGTGTGTGTGTGTGTGTGTGACCCGGGTGGGATTGTaGAGTGTGGCGGATGGATGT +
Preference number: 2 (lower is better)
Translates to: HIQLPRRGEDMVCVCVCVTRVGL*SVADGC
Trigger: ACATCCATCCGCCACACTCCACAATCCCACCCGGGT...CACACACACACACACACACACCATATCCTCTCCTCTCCTAGGCAGCTGGATGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR GCA 90 bp CCCGGTCAGTCCATCTGTCCATGCCTTCATTTGATCAAATGTGCACCCACTATCCTGAGACAGGAAGCCTaGCCTGACACGAGTCAGGGC +
Preference number: 2 (lower is better)
Translates to: PGQSICPCLHLIKCAPTILRQEA*PDTSQG
Trigger: GCCCTGACTCGTGTCAGGGCAGGCTTCCTGTCTCAG...GATAGTGGGTGCACATTTGATCAAATGAAGGCATGGACAGATGGACTGACCGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR-3UTR CCA 90 bp TGGTGCTGTCGTAGTAGCCGATCTTCTTGTAGCTGCCGCCCTGTAGCTGCTCGAACAAGGCTGGTGAGCTaGAGCCATATGAGAGCACAA +
Preference number: 2 (lower is better)
Translates to: WCCRSSRSSCSCRPVAARTRLVS*SHMRAQ
Trigger: TTGTGCTCTCATATGGCTCCAGCTCACCAGCCTTGT...TCGAGCAGCTACAGGGCGGCAGCTACAAGAAGATCGGCTACTACGACAGCACCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR TCA 90 bp CACATCCAGCTGCCTAGGAGAGGAGAGGATATGGTGTGTGTGTGTGTGTGTGTGGAAGACCCCTGCTGCTaGAATGACAGGAGTTGCTGT +
Preference number: 2 (lower is better)
Translates to: HIQLPRRGEDMVCVCVCVEDPCC*NDRSCC
Trigger: ACAGCAACTCCTGTCATTTCAGCAGCAGGGGTCTTC...CACACACACACACACACACACCATATCCTCTCCTCTCCTAGGCAGCTGGATGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR-3UTR TCA 90 bp CACATCCAGCTGCCTAGGAGAGGAGAGGATATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTaGGTCCCCTGGAAGAAGCAA +
Preference number: 2 (lower is better)
Translates to: HIQLPRRGEDMVCVCVCVCVCVW*VPWKKQ
Trigger: TTGCTTCTTCCAGGGGACTCACCACACACACACACA...CACACACACACACACACACACCATATCCTCTCCTCTCCTAGGCAGCTGGATGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR-3UTR CCA 90 bp CCCGGTCAGTCCATCTGTCCATGCCTTCATTTGATCAAATGTGCACCCACTATCCCTTCCCTCCCCTGCTaGCCTCATCCTTCTCGATAC +
Preference number: 2 (lower is better)
Translates to: PGQSICPCLHLIKCAPTIPSLPC*PHPSRY
Trigger: GTATCGAGAAGGATGAGGCCAGCAGGGGAGGGAAGG...GATAGTGGGTGCACATTTGATCAAATGAAGGCATGGACAGATGGACTGACCGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR-3UTR CCA 90 bp CACATCATGCACGCCTACCCAAGCACACCACTGCACACACCCACAACCACTGTGGAAGACACAGGGACATaGAGGAGAAGGATGATGGAA +
Preference number: 2 (lower is better)
Translates to: HIMHAYPSTPLHTPTTTVEDTGT*RRRMME
Trigger: TTCCATCATCCTTCTCCTCCATGTCCCTGTGTCTTC...CACAGTGGTTGTGGGTGTGTGCAGTGGTGTGCTTGGGTAGGCGTGCATGATGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR-3UTR CCA 90 bp GTGAAAGGGATGCTGCCTCCCGCCCGGTCAGTCCATCTGTCCATGCCTTCATTTAGGAAAGATCATCCTTaGTGCTGTCGTAGTAGCCGA +
Preference number: 2 (lower is better)
Translates to: VKGMLPPARSVHLSMPSFRKDHP*CCRSSR
Trigger: TCGGCTACTACGACAGCACCAAGGATGATCTTTCCT...AAATGAAGGCATGGACAGATGGACTGACCGGGCGGGAGGCAGCATCCCTTTCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CAA 90 bp ATCTTCTTCCAGCCCCACTTTTCGAAGAGTTTCACCCGGGTGGGATaGTGGAGTGTGGCGGATGGATGTGTCCGAAAGAACGTTGGAAAC +
Preference number: 2 (lower is better)
Translates to: IFFQPHFSKSFTRVG*WSVADGCVRKNVGN
Trigger: GTTTCCAACGTTCTTTCGGACACATCCATCCGCCACACTCCACAATCCCACCCGGGTGAAACTCTTCGAAAAGTGGGGCTGGAAGAAGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR TCA 90 bp AGGAGTTGCTGTAGTAACAACTATACAAGACAGCCTATGGGAGACAAACGAGATCTCCAGGCGCACTCCTaGACGGCCACCTCCTCCAGA +
Preference number: 2 (lower is better)
Translates to: RSCCSNNYTRQPMGDKRDLQAHS*TATSSR
Trigger: TCTGGAGGAGGTGGCCGTTCAGGAGTGCGCCTGGAG...ATCTCGTTTGTCTCCCATAGGCTGTCTTGTATAGTTGTTACTACAGCAACTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR TCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGGTGAGTCCCCTGGAAGAAGCAACATTTAAGTGCCGAGACTGGAGCTaGTGGCGCAGTTCAGAGACA +
Preference number: 2 (lower is better)
Translates to: CVCVCVCVVSPLEEATFKCRDWS*WRSSET
Trigger: TGTCTCTGAACTGCGCCATCAGCTCCAGTCTCGGCA...CTTAAATGTTGCTTCTTCCAGGGGACTCACCACACACACACACACACACACACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGGTGAGTCCCCTGGAAGAAGCAACATTTAAGCCTTCCCTCCCCTGCTaGCCTCATCCTTCTCGATAC +
Preference number: 2 (lower is better)
Translates to: CVCVCVCVVSPLEEATFKPSLPC*PHPSRY
Trigger: GTATCGAGAAGGATGAGGCCAGCAGGGGAGGGAAGG...CTTAAATGTTGCTTCTTCCAGGGGACTCACCACACACACACACACACACACACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR-3UTR TCA 90 bp AACACATCATGCACGCCTACCCAAGCACACCACTGCACACACCCACAACCACTGCCCAGATGCACAGAATaGCATGTATTTCTAAGAGGG +
Preference number: 2 (lower is better)
Translates to: NTSCTPTQAHHCTHPQPLPRCTE*HVFLRG
Trigger: CCCTCTTAGAAATACATGTCATTCTGTGCATCTGGG...CAGTGGTTGTGGGTGTGTGCAGTGGTGTGCTTGGGTAGGCGTGCATGATGTGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR-3UTR TCA 90 bp CGAAAGAACGTTGGAAACCGCTGTCGGTTTGACAAGGCTGGTGAGCTGGAGCCACCCAGATGCACAGAATaGCATGTATTTCTAAGAGGG +
Preference number: 2 (lower is better)
Translates to: RKNVGNRCRFDKAGELEPPRCTE*HVFLRG
Trigger: CCCTCTTAGAAATACATGTCATTCTGTGCATCTGGG...TGGCTCCAGCTCACCAGCCTTGTCAAACCGACAGCGGTTTCCAACGTTCTTTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR TCA 90 bp CCCGGTCAGTCCATCTGTCCATGCCTTCATTTGATCAAATGTGCACCCACTATCGAAGACCCCTGCTGCTaGAATGACAGGAGTTGCTGT +
Preference number: 2 (lower is better)
Translates to: PGQSICPCLHLIKCAPTIEDPCC*NDRSCC
Trigger: ACAGCAACTCCTGTCATTTCAGCAGCAGGGGTCTTC...GATAGTGGGTGCACATTTGATCAAATGAAGGCATGGACAGATGGACTGACCGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR-3UTR TCA 90 bp TGTAGCTGCTCGATAAGCGTCCATGCCATCCGGGAGCCGCTGGCATCAAAGACCAAACATAGACAACCATaGCATATGCACATGAGGAAG +
Preference number: 2 (lower is better)
Translates to: CSCSISVHAIREPLASKTKHRQP*HMHMRK
Trigger: CTTCCTCATGTGCATATGTCATGGTTGTCTATGTTT...GGTCTTTGATGCCAGCGGCTCCCGGATGGCATGGACGCTTATCGAGCAGCTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR TCA 90 bp GACCGCAACATTGTAGATAGCCATGCCCACGGCCCTGTGGTCATTGATCTTTTCTGCACATGCCTCTGCTaGAAGAAGACAGGACATCAG +
Preference number: 2 (lower is better)
Translates to: DRNIVDSHAHGPVVIDLFCTCLC*KKTGHQ
Trigger: CTGATGTCCTGTCTTCTTTCAGCAGAGGCATGTGCA...GAAAAGATCAATGACCACAGGGCCGTGGGCATGGCTATCTACAATGTTGCGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR TCA 90 bp GGATATCCATGCCCACCAGCAGGCCTACAGTGGCGTACAGTTTCCAAGGCTCTAGTCCATGCCTTCATTTaGTCAAATGTGCACCCACTA +
Preference number: 2 (lower is better)
Translates to: GYPCPPAGLQWRTVSKALVHAFI*SNVHPL
Trigger: TAGTGGGTGCACATTTGATCAAATGAAGGCATGGAC...TAGAGCCTTGGAAACTGTACGCCACTGTAGGCCTGCTGGTGGGCATGGATATCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR GCA 90 bp AAAGAAGACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGCTGAGACAGGAAGCCTaGCCTGACACGAGTCAGGGC +
Preference number: 2 (lower is better)
Translates to: KEDRTSARQTTVIPILRRLRQEA*PDTSQG
Trigger: GCCCTGACTCGTGTCAGGGCAGGCTTCCTGTCTCAG...CCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTCTTCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR-3UTR GCA 90 bp GACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGCTGAGATCATCTTCTTGGAGCTaGAGTGCTCCAGCTGGGGCA +
Preference number: 2 (lower is better)
Translates to: DRTSARQTTVIPILRRLRSSSWS*SAPAGA
Trigger: TGCCCCAGCTGGAGCACTGCAGCTCCAAGAAGATGA...TCTCAGCCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR CCA 90 bp TGCTGGCTGGAAAGGATCATGGTGACAGGAGCGGTAATGAGACACAGGACCGCAATGAGGAAGACAGCTTaGTGTGCTCAACACATCATG +
Preference number: 2 (lower is better)
Translates to: CWLERIMVTGAVMRHRTAMRKTA*CAQHIM
Trigger: CATGATGTGTTGAGCACACCAAGCTGTCTTCCTCAT...TGCGGTCCTGTGTCTCATTACCGCTCCTGTCACCATGATCCTTTCCAGCCAGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR CCA 90 bp CACACACCCACAACCACTGTGCACTCACAGGTGCAGCATATGCAAACACAAGTGACCTCGGTAGTCTGCTaGATGGTGGCAATCTTCTTC +
Preference number: 2 (lower is better)
Translates to: HTPTTTVHSQVQHMQTQVTSVVC*MVAIFF
Trigger: GAAGAAGATTGCCACCATCCAGCAGACTACCGAGGT...CACTTGTGTTTGCATATGCTGCACCTGTGAGTGCACAGTGGTTGTGGGTGTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CAA 90 bp GCCTCCTGGAAGCCTCCAGTCTCCTCAGGGTGTCTTTTCAGCCGCTaGGTTAGTTTCTCCACAAATTCCTGTGATGTCATGTTGGAAATG +
Preference number: 2 (lower is better)
Translates to: ASWKPPVSSGCLFSR*VSFSTNSCDVMLEM
Trigger: CATTTCCAACATGACATCACAGGAATTTGTGGAGAAACTAACCAAGCGGCTGAAAAGACACCCTGAGGAGACTGGAGGCTTCCAGGAGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR TCA 90 bp CCACAATCTGCCAGATGGCAAGAGTCAGGATATCCATGCCCACCAGCAGGCCTAAGTAGTTCTGAGAGATaGTTGTACAGACCCAAAGTG +
Preference number: 2 (lower is better)
Translates to: PQSARWQESGYPCPPAGLSSSER*LYRPKV
Trigger: CACTTTGGGTCTGTACAATCATCTCTCAGAACTACT...TAGGCCTGCTGGTGGGCATGGATATCCTGACTCTTGCCATCTGGCAGATTGTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR CCA 90 bp GTCATAGGTTTTGAACCAGTTGTCAGCATACCACCCGATGAGAAACCAGACATACCTTCCCTCCCCTGCTaGCCTCATCCTTCTCGATAC +
Preference number: 2 (lower is better)
Translates to: VIGFEPVVSIPPDEKPDIPSLPC*PHPSRY
Trigger: GTATCGAGAAGGATGAGGCCAGCAGGGGAGGGAAGG...TATGTCTGGTTTCTCATCGGGTGGTATGCTGACAACTGGTTCAAAACCTATGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR CCA 90 bp AAAGAAGACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGATCTCCGTGGTGATATaGCCCTCCACCGCCTCAGTC +
Preference number: 2 (lower is better)
Translates to: KEDRTSARQTTVIPILRRISVVI*PSTASV
Trigger: GACTGAGGCGGTGGAGGGCCATATCACCACGGAGAT...CCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTCTTCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR TCA 90 bp ACCATGACATATGCACATGAGGAAGACAGCTTGGTGTGCTCAACACATCATGCATGTGTGTGTGTGTGGTaGGTCCCCTGGAAGAAGCAA +
Preference number: 2 (lower is better)
Translates to: TMTYAHEEDSLVCSTHHACVCVW*VPWKKQ
Trigger: TTGCTTCTTCCAGGGGACTCACCACACACACACACA...TGCATGATGTGTTGAGCACACCAAGCTGTCTTCCTCATGTGCATATGTCATGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR-3UTR TCA 90 bp ATCCCGCTCTGCCCCACTAATCCCTGCATGGAACAATCACACAGCTCTTTGCACAGTAGTTCTGAGAGATaGTTGTACAGACCCAAAGTG +
Preference number: 2 (lower is better)
Translates to: IPLCPTNPCMEQSHSSLHSSSER*LYRPKV
Trigger: CACTTTGGGTCTGTACAATCATCTCTCAGAACTACT...GTGCAAAGAGCTGTGTGATTGTTCCATGCAGGGATTAGTGGGGCAGAGCGGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR-3UTR GCA 90 bp CCCGGTCAGTCCATCTGTCCATGCCTTCATTTGATCAAATGTGCACCCACTATCCTGTGCACTCACAGGTaGAGCATATGCAAACACAAG +
Preference number: 2 (lower is better)
Translates to: PGQSICPCLHLIKCAPTILCTHR*SICKHK
Trigger: CTTGTGTTTGCATATGCTGCACCTGTGAGTGCACAG...GATAGTGGGTGCACATTTGATCAAATGAAGGCATGGACAGATGGACTGACCGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR CAA 90 bp CGGTTTTCCTTCTCCAACAGTCGGGACTTCTCTTCCTCATTGTTGTaGGTGGATGATCCTGTTTTCATTGTGTCCTGTGCTTCAGACTGC +
Preference number: 2 (lower is better)
Translates to: RFSFSNSRDFSSSLL*VDDPVFIVSCASDC
Trigger: GCAGTCTGAAGCACAGGACACAATGAAAACAGGATCATCCACCAACAACAATGAGGAAGAGAAGTCCCGACTGTTGGAGAAGGAAAACCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR TCA 90 bp ACACCCACAACCACTGTGCACTCACAGGTGCAGCATATGCAAACACAAGTGATAAGGCACAGCTGGATCTaGGAAGAAACTCTGTCGAAA +
Preference number: 2 (lower is better)
Translates to: TPTTTVHSQVQHMQTQVIRHSWI*EETLSK
Trigger: TTTCGACAGAGTTTCTTCTCAGATCCAGCTGTGCCT...TATCACTTGTGTTTGCATATGCTGCACCTGTGAGTGCACAGTGGTTGTGGGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR GCA 90 bp GACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGCTGAGAAGAAACACATCCAGCTaGCTAGGAGAGGAGAGGATA +
Preference number: 2 (lower is better)
Translates to: DRTSARQTTVIPILRRLRRNTSS*LGEERI
Trigger: TATCCTCTCCTCTCCTAGGCAGCTGGATGTGTTTCT...TCTCAGCCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR-3UTR GCA 90 bp ACTAATCGAGCCCTTCATCTCATCCCGCTCTGCCCCACTAATCCCTGCATGGAACAGTCCATCTGTCCATaGCTTCATTTGATCAAATGT +
Preference number: 2 (lower is better)
Translates to: TNRALHLIPLCPTNPCMEQSICP*LHLIKC
Trigger: ACATTTGATCAAATGAAGGCATGGACAGATGGACTG...TTCCATGCAGGGATTAGTGGGGCAGAGCGGGATGAGATGAAGGGCTCGATTAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR-3UTR GCA 90 bp AGGAGTTGCTGTAGTAACAACTATACAAGACAGCCTATGGGAGACAAACGAGATATCATAGGCCAGTGGTaGCTCCTGGAAGCCTCCAGT +
Preference number: 2 (lower is better)
Translates to: RSCCSNNYTRQPMGDKRDIIGQW*LLEASS
Trigger: ACTGGAGGCTTCCAGGAGGCACCACTGGCCTATGAT...ATCTCGTTTGTCTCCCATAGGCTGTCTTGTATAGTTGTTACTACAGCAACTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR CCA 90 bp CCCGGTCAGTCCATCTGTCCATGCCTTCATTTGATCAAATGTGCACCCACTATCATGAGGAAGACAGCTTaGTGTGCTCAACACATCATG +
Preference number: 2 (lower is better)
Translates to: PGQSICPCLHLIKCAPTIMRKTA*CAQHIM
Trigger: CATGATGTGTTGAGCACACCAAGCTGTCTTCCTCAT...GATAGTGGGTGCACATTTGATCAAATGAAGGCATGGACAGATGGACTGACCGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR-3UTR CCA 90 bp TGTGAAGACTGTGTGGACCCACCAGATCTTGGTGAACATAGAGCCATAGCCCAGTCCACTTGTCTGTTTTaGACCAGGAAAGATCATCCT +
Preference number: 2 (lower is better)
Translates to: CEDCVDPPDLGEHRAIAQSTCLF*TRKDHP
Trigger: AGGATGATCTTTCCTGGTCCAAAACAGACAAGTGGA...CTGGGCTATGGCTCTATGTTCACCAAGATCTGGTGGGTCCACACAGTCTTCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR GCA 90 bp AGGAGTTGCTGTAGTAACAACTATACAAGACAGCCTATGGGAGACAAACGAGATCACCCACAACCACTGTaGACTCACAGGTGCAGCATA +
Preference number: 2 (lower is better)
Translates to: RSCCSNNYTRQPMGDKRDHPQPL*THRCSI
Trigger: TATGCTGCACCTGTGAGTGCACAGTGGTTGTGGGTG...ATCTCGTTTGTCTCCCATAGGCTGTCTTGTATAGTTGTTACTACAGCAACTCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR-3UTR CCA 90 bp CTACCATGGACCAAGCAGATCCAGGCATTGGGATGCATAATTAGCCTAGTTCTTATACAAGACAGCCTATaGGAGACAAACGAGATGCCC +
Preference number: 2 (lower is better)
Translates to: LPWTKQIQALGCIISLVLIQDSL*ETNEMP
Trigger: GGGCATCTCGTTTGTCTCCCATAGGCTGTCTTGTAT...AAGAACTAGGCTAATTATGCATCCCAATGCCTGGATCTGCTTGGTCCATGGTAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR-3UTR TCA 90 bp AGTCAGATTGTTCAGGTTGGGCTGGGAGTTCTGGATATAACGATCCACTTGTCTCATGGAGGAGAAGGATaGTGGAAGGAGATTCTAATG +
Preference number: 2 (lower is better)
Translates to: SQIVQVGLGVLDITIHLSHGGEG*WKEILM
Trigger: CATTAGAATCTCCTTCCATCATCCTTCTCCTCCATG...AGACAAGTGGATCGTTATATCCAGAACTCCCAGCCCAACCTGAACAATCTGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR TCA 90 bp ACCATGACATATGCACATGAGGAAGACAGCTTGGTGTGCTCAACACATCATGCAAACTCTGTCGAAAAGTaGTCTCAATCCCAGCCTCTT +
Preference number: 2 (lower is better)
Translates to: TMTYAHEEDSLVCSTHHANSVEK*SQSQPL
Trigger: AAGAGGCTGGGATTGAGATCACTTTTCGACAGAGTT...TGCATGATGTGTTGAGCACACCAAGCTGTCTTCCTCATGTGCATATGTCATGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR GCA 90 bp AGTCACACTGTTAACTGCTTTATTGAGATTCAGGGAGATCCTTCCCCCAAGAGAAGAAACACATCCAGCTaGCTAGGAGAGGAGAGGATA +
Preference number: 2 (lower is better)
Translates to: SHTVNCFIEIQGDPSPKRRNTSS*LGEERI
Trigger: TATCCTCTCCTCTCCTAGGCAGCTGGATGTGTTTCT...TCTCTTGGGGGAAGGATCTCCCTGAATCTCAATAAAGCAGTTAACAGTGTGACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
3UTR-3UTR GCA 90 bp AGTCACACTGTTAACTGCTTTATTGAGATTCAGGGAGATCCTTCCCCCAAGAGACTGTGCACTCACAGGTaGAGCATATGCAAACACAAG +
Preference number: 2 (lower is better)
Translates to: SHTVNCFIEIQGDPSPKRLCTHR*SICKHK
Trigger: CTTGTGTTTGCATATGCTGCACCTGTGAGTGCACAG...TCTCTTGGGGGAAGGATCTCCCTGAATCTCAATAAAGCAGTTAACAGTGTGACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
3UTR-3UTR GCA 90 bp TCTTCCCAAGATGCTCAGAGTTCCTTAGAGAACGGTTTCCAAGTTCTGAGGCGCCTCTTTGCACCTCTCTaGTTCAAAGCCTTTTCATTA +
Preference number: 2 (lower is better)
Translates to: SSQDAQSSLENGFQVLRRLFAPL*FKAFSL
Trigger: TAATGAAAAGGCTTTGAAGCAGAGAGGTGCAAAGAG...GCGCCTCAGAACTTGGAAACCGTTCTCTAAGGAACTCTGAGCATCTTGGGAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR-3UTR GCA 90 bp CTACCATGGACCAAGCAGATCCAGGCATTGGGATGCATAATTAGCCTAGTTCTTAATCACACAGCTCTTTaGACCTCTCTGCTTCAAAGC +
Preference number: 2 (lower is better)
Translates to: LPWTKQIQALGCIISLVLNHTAL*TSLLQS
Trigger: GCTTTGAAGCAGAGAGGTGCAAAGAGCTGTGTGATT...AAGAACTAGGCTAATTATGCATCCCAATGCCTGGATCTGCTTGGTCCATGGTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR-3UTR GCA 90 bp ACCATGACATATGCACATGAGGAAGACAGCTTGGTGTGCTCAACACATCATGCAAAAGATCATCCTTGGTaGTGTCGTAGTAGCCGATCT +
Preference number: 2 (lower is better)
Translates to: TMTYAHEEDSLVCSTHHAKDHPW*CRSSRS
Trigger: AGATCGGCTACTACGACAGCACCAAGGATGATCTTT...TGCATGATGTGTTGAGCACACCAAGCTGTCTTCCTCATGTGCATATGTCATGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR CCA 90 bp GTCATAGGTTTTGAACCAGTTGTCAGCATACCACCCGATGAGAAACCAGACATAGAAGACACAGGGACATaGAGGAGAAGGATGATGGAA +
Preference number: 2 (lower is better)
Translates to: VIGFEPVVSIPPDEKPDIEDTGT*RRRMME
Trigger: TTCCATCATCCTTCTCCTCCATGTCCCTGTGTCTTC...TATGTCTGGTTTCTCATCGGGTGGTATGCTGACAACTGGTTCAAAACCTATGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CAA 90 bp AATTCACGGTTTTCCTTCTCCAACAGTCGGGACTTCTCTTCCTCATaGTTGTTGGTGGATGATCCTGTTTTCATTGTGTCCTGTGCTTCA +
Preference number: 2 (lower is better)
Translates to: NSRFSFSNSRDFSSS*LLVDDPVFIVSCAS
Trigger: TGAAGCACAGGACACAATGAAAACAGGATCATCCACCAACAACAATGAGGAAGAGAAGTCCCGACTGTTGGAGAAGGAAAACCGTGAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR TCA 90 bp GACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGCTGAGAATTGTTGTTGGTGGATaGTCCTGTTTTCATTGTGTC +
Preference number: 2 (lower is better)
Translates to: DRTSARQTTVIPILRRLRIVVGG*SCFHCV
Trigger: GACACAATGAAAACAGGATCATCCACCAACAACAAT...TCTCAGCCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR GCA 90 bp AGGAGTTGCTGTAGTAACAACTATACAAGACAGCCTATGGGAGACAAACGAGATCCCTTGAAGCTTCCATaGAGCAAGAGGGAAGAAGAA +
Preference number: 2 (lower is better)
Translates to: RSCCSNNYTRQPMGDKRDPLKLP*SKREEE
Trigger: TTCTTCTTCCCTCTTGCTGCATGGAAGCTTCAAGGG...ATCTCGTTTGTCTCCCATAGGCTGTCTTGTATAGTTGTTACTACAGCAACTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR-3UTR GCA 90 bp AGGAGTTGCTGTAGTAACAACTATACAAGACAGCCTATGGGAGACAAACGAGATATGTCATGTTGGAAATaGTTCGGGTGTTGGCAGGGT +
Preference number: 2 (lower is better)
Translates to: RSCCSNNYTRQPMGDKRDMSCWK*FGCWQG
Trigger: ACCCTGCCAACACCCGAAGCATTTCCAACATGACAT...ATCTCGTTTGTCTCCCATAGGCTGTCTTGTATAGTTGTTACTACAGCAACTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR CCA 90 bp AGGAGAGGAGAGGATATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTAATGCTGAGAAATaGAGAGAAAGCCCTGATAAT +
Preference number: 2 (lower is better)
Translates to: RRGEDMVCVCVCVCVCVCSNAEK*RESPDN
Trigger: ATTATCAGGGCTTTCTCTCCATTTCTCAGCATTAGA...ACACACACACACACACACACACACACACACACACACCATATCCTCTCCTCTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR CAA 90 bp GCATATGCAAACACAAGTGATAGCAGCATTCAGAAAAGAACATATTaGCACAGAAACACATCCAGCTGCCTAGGAGAGGAGAGGATATGG +
Preference number: 2 (lower is better)
Translates to: AYANTSDSSIQKRTY*HRNTSSCLGEERIW
Trigger: CCATATCCTCTCCTCTCCTAGGCAGCTGGATGTGTTTCTGTGCAAATATGTTCTTTTCTGAATGCTGCTATCACTTGTGTTTGCATATGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR-3UTR TCA 90 bp AGGAGTTGCTGTAGTAACAACTATACAAGACAGCCTATGGGAGACAAACGAGATCCCAGATGCACAGAATaGCATGTATTTCTAAGAGGG +
Preference number: 2 (lower is better)
Translates to: RSCCSNNYTRQPMGDKRDPRCTE*HVFLRG
Trigger: CCCTCTTAGAAATACATGTCATTCTGTGCATCTGGG...ATCTCGTTTGTCTCCCATAGGCTGTCTTGTATAGTTGTTACTACAGCAACTCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR-3UTR TCA 90 bp TTCCAGGAGAGAAGAGTATATATATACAAGAGTTTGGGTGCCCAGAAAAGGGAGCCAGTCCTAGAAGAGTaGTACAGAGGATGTTCTAAG +
Preference number: 2 (lower is better)
Translates to: FQERRVYIYKSLGAQKREPVLEE*YRGCSK
Trigger: CTTAGAACATCCTCTGTATCACTCTTCTAGGACTGG...CTCCCTTTTCTGGGCACCCAAACTCTTGTATATATATACTCTTCTCTCCTGGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
3UTR-3UTR TCA 90 bp TCCAGGAGAGAAGAGTATATATATACAAGAGTTTGGGTGCCCAGAAAAGGGAGATCTTCCATCTGCCCTTaGATTATCACTGTTCTGGTC +
Preference number: 2 (lower is better)
Translates to: SRREEYIYTRVWVPRKGRSSICP*IITVLV
Trigger: GACCAGAACAGTGATAATTCAAGGGCAGATGGAAGA...TCTCCCTTTTCTGGGCACCCAAACTCTTGTATATATATACTCTTCTCTCCTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
3UTR-3UTR GCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGGTGAGTCCCCTGGAAGAAGCAACATTTAAGAGTCACACTGTTAACTaGTTTATTGAGATTCAGGGA +
Preference number: 2 (lower is better)
Translates to: CVCVCVCVVSPLEEATFKSHTVN*FIEIQG
Trigger: TCCCTGAATCTCAATAAAGCAGTTAACAGTGTGACT...CTTAAATGTTGCTTCTTCCAGGGGACTCACCACACACACACACACACACACACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
3UTR-3UTR CCA 90 bp AGGAGTTGCTGTAGTAACAACTATACAAGACAGCCTATGGGAGACAAACGAGATATGAGGAAGACAGCTTaGTGTGCTCAACACATCATG +
Preference number: 2 (lower is better)
Translates to: RSCCSNNYTRQPMGDKRDMRKTA*CAQHIM
Trigger: CATGATGTGTTGAGCACACCAAGCTGTCTTCCTCAT...ATCTCGTTTGTCTCCCATAGGCTGTCTTGTATAGTTGTTACTACAGCAACTCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR-3UTR GCA 90 bp GTTAACTGCTTTATTGAGATTCAGGGAGATCCTTCCCCCAAGAGACACCACAGTAAATTCTTCCCAAGATaGTCAGAGTTCCTTAGAGAA +
Preference number: 2 (lower is better)
Translates to: VNCFIEIQGDPSPKRHHSKFFPR*SEFLRE
Trigger: TTCTCTAAGGAACTCTGAGCATCTTGGGAAGAATTT...ACTGTGGTGTCTCTTGGGGGAAGGATCTCCCTGAATCTCAATAAAGCAGTTAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR-3UTR TCA 90 bp AGGAGTTGCTGTAGTAACAACTATACAAGACAGCCTATGGGAGACAAACGAGATAAACATAGACAACCATaGCATATGCACATGAGGAAG +
Preference number: 2 (lower is better)
Translates to: RSCCSNNYTRQPMGDKRDKHRQP*HMHMRK
Trigger: CTTCCTCATGTGCATATGTCATGGTTGTCTATGTTT...ATCTCGTTTGTCTCCCATAGGCTGTCTTGTATAGTTGTTACTACAGCAACTCCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR-3UTR TCA 90 bp TCCAGGAGAGAAGAGTATATATATACAAGAGTTTGGGTGCCCAGAAAAGGGAGAAATTCCATTATAGAGTaGATAGCAAAGGACCAGTCC +
Preference number: 2 (lower is better)
Translates to: SRREEYIYTRVWVPRKGRNSIIE*IAKDQS
Trigger: GGACTGGTCCTTTGCTATTCACTCTATAATGGAATT...TCTCCCTTTTCTGGGCACCCAAACTCTTGTATATATATACTCTTCTCTCCTGGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
3UTR-3UTR TCA 90 bp ACAGTCTTAAGAGCTCAAAATAAGGACTTAGTCAAAATGAAGAACCCTGAAGCTCCAGTCCTAGAAGAGTaGTACAGAGGATGTTCTAAG +
Preference number: 2 (lower is better)
Translates to: TVLRAQNKDLVKMKNPEAPVLEE*YRGCSK
Trigger: CTTAGAACATCCTCTGTATCACTCTTCTAGGACTGG...AGCTTCAGGGTTCTTCATTTTGACTAAGTCCTTATTTTGAGCTCTTAAGACTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
3UTR-3UTR CCA 90 bp CATTCCAGGAGAGAAGAGTATATATATACAAGAGTTTGGGTGCCCAGAAAAGGGGAATTATCACTGTTCTaGTCATTCTGCCCCAATTTT +
Preference number: 2 (lower is better)
Translates to: HSRREEYIYTRVWVPRKGELSLF*SFCPNF
Trigger: AAAATTGGGGCAGAATGACCAGAACAGTGATAATTC...CCCTTTTCTGGGCACCCAAACTCTTGTATATATATACTCTTCTCTCCTGGAATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
3UTR-3UTR GCA 90 bp ACAGTCTTAAGAGCTCAAAATAAGGACTTAGTCAAAATGAAGAACCCTGAAGCTGAAAAGGGAGACGTTTaGAGAAAAGACAGCAAAGAG +
Preference number: 2 (lower is better)
Translates to: TVLRAQNKDLVKMKNPEAEKGDV*RKDSKE
Trigger: CTCTTTGCTGTCTTTTCTGCAAACGTCTCCCTTTTC...AGCTTCAGGGTTCTTCATTTTGACTAAGTCCTTATTTTGAGCTCTTAAGACTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
3UTR-3UTR CCA 90 bp ACAGTCTTAAGAGCTCAAAATAAGGACTTAGTCAAAATGAAGAACCCTGAAGCTGAATTATCACTGTTCTaGTCATTCTGCCCCAATTTT +
Preference number: 2 (lower is better)
Translates to: TVLRAQNKDLVKMKNPEAELSLF*SFCPNF
Trigger: AAAATTGGGGCAGAATGACCAGAACAGTGATAATTC...AGCTTCAGGGTTCTTCATTTTGACTAAGTCCTTATTTTGAGCTCTTAAGACTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
3UTR TCA 72 bp TGGCGCCGGGAGCGGATCTGCTGCCGAGACTGGAGCTaGTGGCGCAGTTCAGAGACACGCTCCTCTTTCTCG +
Preference number: 3 (lower is better)
Translates to: WRRERICCRDWS*WRSSETRSSFS
Trigger: CGAGAAAGAGGAGCGTGTCTCTGAACTGCGCCATCAGCTCCAGTCTCGGCAGCAGATCCGCTCCCGGCGCCA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR GCA 72 bp GCCACCTACTCCAGGCTCCCAGAGCATGCCCACCACTaGTGGGGAATCCAGGAGGCAACAGTAACAGAGGCT +
Preference number: 3 (lower is better)
Translates to: ATYSRLPEHAHH*WGIQEATVTEA
Trigger: AGCCTCTGTTACTGTTGCCTCCTGGATTCCCCAGCAGTGGTGGGCATGCTCTGGGAGCCTGGAGTAGGTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR CCA 72 bp GGCCAAAGCCAAGGCCCAGATAGCATCATAGGCCAGTaGTGCCTCCTGGAAGCCTCCAGTCTCCTCAGGGTG +
Preference number: 3 (lower is better)
Translates to: GQSQGPDSIIGQ*CLLEASSLLRV
Trigger: CACCCTGAGGAGACTGGAGGCTTCCAGGAGGCACCACTGGCCTATGATGCTATCTGGGCCTTGGCTTTGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR GCA 72 bp ACAATGGCCAGAGAGGCAAAGGCGAAGGCTGCGTCCTaGTGGCTGGAAAGGATCATGGTGACAGGAGCGGTA +
Preference number: 3 (lower is better)
Translates to: TMAREAKAKAAS*WLERIMVTGAV
Trigger: TACCGCTCCTGTCACCATGATCCTTTCCAGCCAGCAGGACGCAGCCTTCGCCTTTGCCTCTCTGGCCATTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 72 bp ACCTACTCCAGGCTCCCAGAGCATGCCCACCACTGCTaGGGAATCCAGGAGGCAACAGTAACAGAGGCTACT +
Preference number: 3 (lower is better)
Translates to: TYSRLPEHAHHC*GIQEATVTEAT
Trigger: AGTAGCCTCTGTTACTGTTGCCTCCTGGATTCCCCAGCAGTGGTGGGCATGCTCTGGGAGCCTGGAGTAGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR GCA 72 bp AGAGAACACAATGGCCAGAGAGGCAAAGGCGAAGGCTaGGTCCTGCTGGCTGGAAAGGATCATGGTGACAGG +
Preference number: 3 (lower is better)
Translates to: REHNGQRGKGEG*VLLAGKDHGDR
Trigger: CCTGTCACCATGATCCTTTCCAGCCAGCAGGACGCAGCCTTCGCCTTTGCCTCTCTGGCCATTGTGTTCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 72 bp GAGTTTCACCCGGGTGGGATTGTGGAGTGTGGCGGATaGATGTGTCCGAAAGAACGTTGGAAACCGCTGTCG +
Preference number: 3 (lower is better)
Translates to: EFHPGGIVECGG*MCPKERWKPLS
Trigger: CGACAGCGGTTTCCAACGTTCTTTCGGACACATCCATCCGCCACACTCCACAATCCCACCCGGGTGAAACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 72 bp GAGTCAGGATATCCATGCCCACCAGCAGGCCTACAGTaGCGTACAGTTTCCAAGGCTCTAGGGTCTTCCTCC +
Preference number: 3 (lower is better)
Translates to: ESGYPCPPAGLQ*RTVSKALGSSS
Trigger: GGAGGAAGACCCTAGAGCCTTGGAAACTGTACGCCACTGTAGGCCTGCTGGTGGGCATGGATATCCTGACTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR CAA 90 bp AGATCCTTCCCCCAAGAGACACCACAGTGTGAAAGGGATGCTGCCTCCCGCCCGTTAATCATGTGCATGTaGGGTGCACATGCCTCTGCT +
Preference number: 3 (lower is better)
Translates to: RSFPQETPQCERDAASRPLIMCM*GAHASA
Trigger: AGCAGAGGCATGTGCACCCAACATGCACATGATTAA...CGGGCGGGAGGCAGCATCCCTTTCACACTGTGGTGTCTCTTGGGGGAAGGATCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR TCA 72 bp CTGGTTGTTGTAGTTAAAGTCCTCCAGGCGCACTCCTaGACGGCCACCTCCTCCAGAGGTCTTGTTCAAGGC +
Preference number: 3 (lower is better)
Translates to: LVVVVKVLQAHS*TATSSRGLVQG
Trigger: GCCTTGAACAAGACCTCTGGAGGAGGTGGCCGTTCAGGAGTGCGCCTGGAGGACTTTAACTACAACAACCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR GCA 72 bp GGATGCTGCCTCCCGCCCGGTCAGTCCATCTGTCCATaGCTTCATTTGATCAAATGTGCACCCACTATCCAC +
Preference number: 3 (lower is better)
Translates to: GCCLPPGQSICP*LHLIKCAPTIH
Trigger: GTGGATAGTGGGTGCACATTTGATCAAATGAAGGCATGGACAGATGGACTGACCGGGCGGGAGGCAGCATCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR GCA 72 bp TTCTTCCTGTCTGATGAGGAGGAGACTCTTCACATCTaGTCAGCCACCTACTCCAGGCTCCCAGAGCATGCC +
Preference number: 3 (lower is better)
Translates to: FFLSDEEETLHI*SATYSRLPEHA
Trigger: GGCATGCTCTGGGAGCCTGGAGTAGGTGGCTGAGCAGATGTGAAGAGTCTCCTCCTCATCAGACAGGAAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR GCA 72 bp CCACAATCTGCCAGATGGCAAGAGTCAGGATATCCATaGCCACCAGCAGGCCTACAGTGGCGTACAGTTTCC +
Preference number: 3 (lower is better)
Translates to: PQSARWQESGYP*PPAGLQWRTVS
Trigger: GGAAACTGTACGCCACTGTAGGCCTGCTGGTGGGCATGGATATCCTGACTCTTGCCATCTGGCAGATTGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 72 bp TCTTCCAGCCCCACTTTTCGAAGAGTTTCACCCGGGTaGGATTGTGGAGTGTGGCGGATGGATGTGTCCGAA +
Preference number: 3 (lower is better)
Translates to: SSSPTFRRVSPG*DCGVWRMDVSE
Trigger: TTCGGACACATCCATCCGCCACACTCCACAATCCCACCCGGGTGAAACTCTTCGAAAAGTGGGGCTGGAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 72 bp AGACTAAAGCCTAAGCCCAAGAGCCAAAGGCGGGCCTaGCAGACAAATGGGAACTGGCTTCTCCCTATGTGG +
Preference number: 3 (lower is better)
Translates to: RLKPKPKSQRRA*QTNGNWLLPMW
Trigger: CCACATAGGGAGAAGCCAGTTCCCATTTGTCTGCCAGGCCCGCCTTTGGCTCTTGGGCTTAGGCTTTAGTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR CAA 90 bp AGATCCTTCCCCCAAGAGACACCACAGTGTGAAAGGGATGCTGCCTCCCGCCCGTGTCCATGCCTTCATTaGATCAAATGTGCACCCACT +
Preference number: 3 (lower is better)
Translates to: RSFPQETPQCERDAASRPCPCLH*IKCAPT
Trigger: AGTGGGTGCACATTTGATCAAATGAAGGCATGGACA...CGGGCGGGAGGCAGCATCCCTTTCACACTGTGGTGTCTCTTGGGGGAAGGATCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR GCA 72 bp GTAATCCCAATACTCAGAAGGCTGAGACAGGAAGCCTaGCCTGACACGAGTCAGGGCAACACACACACACAC +
Preference number: 3 (lower is better)
Translates to: VIPILRRLRQEA*PDTSQGNTHTH
Trigger: GTGTGTGTGTGTGTTGCCCTGACTCGTGTCAGGGCAGGCTTCCTGTCTCAGCCTTCTGAGTATTGGGATTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR GCA 72 bp GCCCTTCATCTCATCCCGCTCTGCCCCACTAATCCCTaGATGGAACAATCACACAGCTCTTTGCACCTCTCT +
Preference number: 3 (lower is better)
Translates to: ALHLIPLCPTNP*MEQSHSSLHLS
Trigger: AGAGAGGTGCAAAGAGCTGTGTGATTGTTCCATGCAGGGATTAGTGGGGCAGAGCGGGATGAGATGAAGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR CCA 72 bp TGGGGTCGTTGTAGAGTAGTTCATACAAGTACTTGGTaGCTTGCCCTGGGTCGCACTTGCTGTCGTGGTGGA +
Preference number: 3 (lower is better)
Translates to: WGRCRVVHTSTW*LALGRTCCRGG
Trigger: TCCACCACGACAGCAAGTGCGACCCAGGGCAAGCCACCAAGTACTTGTATGAACTACTCTACAACGACCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 72 bp CCCCACTTTTCGAAGAGTTTCACCCGGGTGGGATTGTaGAGTGTGGCGGATGGATGTGTCCGAAAGAACGTT +
Preference number: 3 (lower is better)
Translates to: PHFSKSFTRVGL*SVADGCVRKNV
Trigger: AACGTTCTTTCGGACACATCCATCCGCCACACTCCACAATCCCACCCGGGTGAAACTCTTCGAAAAGTGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR CAA 90 bp CACATCATGCACGCCTACCCAAGCACACCACTGCACACACCCACAACCACTGTGTTAATCATGTGCATGTaGGGTGCACATGCCTCTGCT +
Preference number: 3 (lower is better)
Translates to: HIMHAYPSTPLHTPTTTVLIMCM*GAHASA
Trigger: AGCAGAGGCATGTGCACCCAACATGCACATGATTAA...CACAGTGGTTGTGGGTGTGTGCAGTGGTGTGCTTGGGTAGGCGTGCATGATGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR TCA 72 bp TCCCGCCCGGTCAGTCCATCTGTCCATGCCTTCATTTaGTCAAATGTGCACCCACTATCCACTGGAAACAGC +
Preference number: 3 (lower is better)
Translates to: SRPVSPSVHAFI*SNVHPLSTGNS
Trigger: GCTGTTTCCAGTGGATAGTGGGTGCACATTTGATCAAATGAAGGCATGGACAGATGGACTGACCGGGCGGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR GCA 72 bp AGGTCATCCAGTGTTGAGGTGAAGACCTCGGTAGTCTaGTGGATGGTGGCAATCTTCTTCCAGCCCCACTTT +
Preference number: 3 (lower is better)
Translates to: RSSSVEVKTSVV*WMVAIFFQPHF
Trigger: AAAGTGGGGCTGGAAGAAGATTGCCACCATCCAGCAGACTACCGAGGTCTTCACCTCAACACTGGATGACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR GCA 72 bp AAAGTCTCAATGGTTCGGTGCAAGGGGTCCACAATCTaGCAGATGGCAAGAGTCAGGATATCCATGCCCACC +
Preference number: 3 (lower is better)
Translates to: KVSMVRCKGSTI*QMARVRISMPT
Trigger: GGTGGGCATGGATATCCTGACTCTTGCCATCTGGCAGATTGTGGACCCCTTGCACCGAACCATTGAGACTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 72 bp TTTCGAAGAGTTTCACCCGGGTGGGATTGTGGAGTGTaGCGGATGGATGTGTCCGAAAGAACGTTGGAAACC +
Preference number: 3 (lower is better)
Translates to: FRRVSPGWDCGV*RMDVSERTLET
Trigger: GGTTTCCAACGTTCTTTCGGACACATCCATCCGCCACACTCCACAATCCCACCCGGGTGAAACTCTTCGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 72 bp TCATCCAGTGTTGAGGTGAAGACCTCGGTAGTCTGCTaGATGGTGGCAATCTTCTTCCAGCCCCACTTTTCG +
Preference number: 3 (lower is better)
Translates to: SSSVEVKTSVVC*MVAIFFQPHFS
Trigger: CGAAAAGTGGGGCTGGAAGAAGATTGCCACCATCCAGCAGACTACCGAGGTCTTCACCTCAACACTGGATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 72 bp TTGGCAGGGTTCAGCATGACAATCTCCGTGGTGATATaGCCCTCCACCGCCTCAGTCATCTCTTCTACTGTA +
Preference number: 3 (lower is better)
Translates to: LAGFSMTISVVI*PSTASVISSTV
Trigger: TACAGTAGAAGAGATGACTGAGGCGGTGGAGGGCCATATCACCACGGAGATTGTCATGCTGAACCCTGCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR CAA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGGTGAGTCCCCTGGAAGAAGCAACATTTAAGGAAACCGCTGTCGGTTaGACAAGGCTGGTGAGCTGG +
Preference number: 3 (lower is better)
Translates to: CVCVCVCVVSPLEEATFKETAVG*TRLVSW
Trigger: CCAGCTCACCAGCCTTGTCAAACCGACAGCGGTTTC...CTTAAATGTTGCTTCTTCCAGGGGACTCACCACACACACACACACACACACACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR CAA 90 bp CACATCATGCACGCCTACCCAAGCACACCACTGCACACACCCACAACCACTGTGATCCACTTGTCTGTTTaGGACCAGGAAAGATCATCC +
Preference number: 3 (lower is better)
Translates to: HIMHAYPSTPLHTPTTTVIHLSV*DQERSS
Trigger: GGATGATCTTTCCTGGTCCAAAACAGACAAGTGGAT...CACAGTGGTTGTGGGTGTGTGCAGTGGTGTGCTTGGGTAGGCGTGCATGATGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR CAA 90 bp TGTGAAGACTGTGTGGACCCACCAGATCTTGGTGAACATAGAGCCATAGCCCAGCATGGCCCGGTAGATTaGGTCTGTAATGGTCTGGTT +
Preference number: 3 (lower is better)
Translates to: CEDCVDPPDLGEHRAIAQHGPVD*VCNGLV
Trigger: AACCAGACCATTACAGACCAAATCTACCGGGCCATG...CTGGGCTATGGCTCTATGTTCACCAAGATCTGGTGGGTCCACACAGTCTTCACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 72 bp TTCATCTCATCCCGCTCTGCCCCACTAATCCCTGCATaGAACAATCACACAGCTCTTTGCACCTCTCTGCTT +
Preference number: 3 (lower is better)
Translates to: FISSRSAPLIPA*NNHTALCTSLL
Trigger: AAGCAGAGAGGTGCAAAGAGCTGTGTGATTGTTCCATGCAGGGATTAGTGGGGCAGAGCGGGATGAGATGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR-3UTR CAA 90 bp TGCTTCAGACTGCCATTCACCTCGAGTGATCAACCTGCGCATCTTAGGCACAAAGTCAGATTGTTCAGGTaGGGCTGGGAGTTCTGGATA +
Preference number: 3 (lower is better)
Translates to: CFRLPFTSSDQPAHLRHKVRLFR*GWEFWI
Trigger: TATCCAGAACTCCCAGCCCAACCTGAACAATCTGAC...TTTGTGCCTAAGATGCGCAGGTTGATCACTCGAGGTGAATGGCAGTCTGAAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR CAA 90 bp GAAAATGCCGAGCCATGTATTCATCTTCTTGGAGCTGCAGTGCTCCAGCTGGGGCATCAATGTCTTCCTTaGGTTCCTCCTTGGCAAAAG +
Preference number: 3 (lower is better)
Translates to: ENAEPCIHLLGAAVLQLGHQCLP*VPPWQK
Trigger: CTTTTGCCAAGGAGGAACCAAAGGAAGACATTGATG...CCCCAGCTGGAGCACTGCAGCTCCAAGAAGATGAATACATGGCTCGGCATTTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR TCA 72 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTaGGTCCCCTGGAAGAAGCAACATTTAAGGAGAGGA +
Preference number: 3 (lower is better)
Translates to: VCVCVCVCVCVW*VPWKKQHLRRG
Trigger: TCCTCTCCTTAAATGTTGCTTCTTCCAGGGGACTCACCACACACACACACACACACACACACACACACACAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR TCA 72 bp GCACAGCTGGATCTGAGAAGAAACTCTGTCGAAAAGTaGTCTCAATCCCAGCCTCTTTCACTCGCTCCTCCA +
Preference number: 3 (lower is better)
Translates to: AQLDLRRNSVEK*SQSQPLSLAPP
Trigger: TGGAGGAGCGAGTGAAAGAGGCTGGGATTGAGATCACTTTTCGACAGAGTTTCTTCTCAGATCCAGCTGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR GCA 72 bp ACTTGTCTGTTTTGGACCAGGAAAGATCATCCTTGGTaGTGTCGTAGTAGCCGATCTTCTTGTAGCTGCCGC +
Preference number: 3 (lower is better)
Translates to: TCLFWTRKDHPW*CRSSRSSCSCR
Trigger: GCGGCAGCTACAAGAAGATCGGCTACTACGACAGCACCAAGGATGATCTTTCCTGGTCCAAAACAGACAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR GCA 72 bp AGAAAATGCCGAGCCATGTATTCATCTTCTTGGAGCTaGAGTGCTCCAGCTGGGGCAGAATGGAGACATCAA +
Preference number: 3 (lower is better)
Translates to: RKCRAMYSSSWS*SAPAGAEWRHQ
Trigger: TTGATGTCTCCATTCTGCCCCAGCTGGAGCACTGCAGCTCCAAGAAGATGAATACATGGCTCGGCATTTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 72 bp AGAAACACATCCAGCTGCCTAGGAGAGGAGAGGATATaGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT +
Preference number: 3 (lower is better)
Translates to: RNTSSCLGEERI*CVCVCVCVCVC
Trigger: ACACACACACACACACACACACACACACACACACCATATCCTCTCCTCTCCTAGGCAGCTGGATGTGTTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR CCA 72 bp CAAGGAGAGGGTATGCATGGCTCAGAAAACACGTACTaGGGAAGAGCCTGCTTAATCATGTGCATGTTGGGT +
Preference number: 3 (lower is better)
Translates to: QGEGMHGSENTY*GRACLIMCMLG
Trigger: ACCCAACATGCACATGATTAAGCAGGCTCTTCCCCAGTACGTGTTTTCTGAGCCATGCATACCCTCTCCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR TCA 72 bp GAGCCCACTCAGTTCACAGGACAGTGGATGAGGTGCTaGGTCACACTGTTAACTGCTTTATTGAGATTCAGG +
Preference number: 3 (lower is better)
Translates to: EPTQFTGQWMRC*VTLLTALLRFR
Trigger: CCTGAATCTCAATAAAGCAGTTAACAGTGTGACTCAGCACCTCATCCACTGTCCTGTGAACTGAGTGGGCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR GCA 72 bp GAAAACACGTACTGGGGAAGAGCCTGCTTAATCATGTaGATGTTGGGTGCACATGCCTCTGCTGAAAGAAGA +
Preference number: 3 (lower is better)
Translates to: ENTYWGRACLIM*MLGAHASAERR
Trigger: TCTTCTTTCAGCAGAGGCATGTGCACCCAACATGCACATGATTAAGCAGGCTCTTCCCCAGTACGTGTTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR GCA 72 bp CTACTACCATGGACCAAGCAGATCCAGGCATTGGGATaGATAATTAGCCTAGTTCTTGTGTGCACTCCACAG +
Preference number: 3 (lower is better)
Translates to: LLPWTKQIQALG*IISLVLVCTPQ
Trigger: CTGTGGAGTGCACACAAGAACTAGGCTAATTATGCATCCCAATGCCTGGATCTGCTTGGTCCATGGTAGTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR CCA 72 bp GGAGTTGCTGTAGTAACAACTATACAAGACAGCCTATaGGAGACAAACGAGATGCCCCTCTGGAGTCATGAG +
Preference number: 3 (lower is better)
Translates to: GVAVVTTIQDSL*ETNEMPLWSHE
Trigger: CTCATGACTCCAGAGGGGCATCTCGTTTGTCTCCCATAGGCTGTCTTGTATAGTTGTTACTACAGCAACTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR CCA 72 bp TTCAAAGCCTTTTCATTAACTCCAATCTTGAGAGCCTaGGCTTCTCGCTTCCTGGAGCCCACTCAGTTCACA +
Preference number: 3 (lower is better)
Translates to: FKAFSLTPILRA*ASRFLEPTQFT
Trigger: TGTGAACTGAGTGGGCTCCAGGAAGCGAGAAGCCCAGGCTCTCAAGATTGGAGTTAATGAAAAGGCTTTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR CCA 72 bp AGCCTCCAGTCTCCTCAGGGTGTCTTTTCAGCCGCTTaGTTAGTTTCTCCACAAATTCCTGTGATGTCATGT +
Preference number: 3 (lower is better)
Translates to: SLQSPQGVFSAA*LVSPQIPVMSC
Trigger: ACATGACATCACAGGAATTTGTGGAGAAACTAACCAAGCGGCTGAAAAGACACCCTGAGGAGACTGGAGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 72 bp TCCACTTGTCTGTTTTGGACCAGGAAAGATCATCCTTaGTGCTGTCGTAGTAGCCGATCTTCTTGTAGCTGC +
Preference number: 3 (lower is better)
Translates to: STCLFWTRKDHP*CCRSSRSSCSC
Trigger: GCAGCTACAAGAAGATCGGCTACTACGACAGCACCAAGGATGATCTTTCCTGGTCCAAAACAGACAAGTGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 72 bp CATGTATTCATCTTCTTGGAGCTGCAGTGCTCCAGCTaGGGCAGAATGGAGACATCAATGTCTTCCTTTGGT +
Preference number: 3 (lower is better)
Translates to: HVFIFLELQCSS*GRMETSMSSFG
Trigger: ACCAAAGGAAGACATTGATGTCTCCATTCTGCCCCAGCTGGAGCACTGCAGCTCCAAGAAGATGAATACATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR-3UTR CAA 90 bp CACACACCCACAACCACTGTGCACTCACAGGTGCAGCATATGCAAACACAAGTGCAGAAAAGAACATATTaGCACAGAAACACATCCAGC +
Preference number: 3 (lower is better)
Translates to: HTPTTTVHSQVQHMQTQVQKRTY*HRNTSS
Trigger: GCTGGATGTGTTTCTGTGCAAATATGTTCTTTTCTG...CACTTGTGTTTGCATATGCTGCACCTGTGAGTGCACAGTGGTTGTGGGTGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR TCA 72 bp CGCTTATTCCAGAACCTGGCACTCATTGTTTGCTTGTaGTTCTTCCTGTCTGATGAGGAGGAGACTCTTCAC +
Preference number: 3 (lower is better)
Translates to: RLFQNLALIVCL*FFLSDEEETLH
Trigger: GTGAAGAGTCTCCTCCTCATCAGACAGGAAGAATCACAAGCAAACAATGAGTGCCAGGTTCTGGAATAAGCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR TCA 72 bp CAGTCGGGACTTCTCTTCCTCATTGTTGTTGGTGGATaGTCCTGTTTTCATTGTGTCCTGTGCTTCAGACTG +
Preference number: 3 (lower is better)
Translates to: QSGLLFLIVVGG*SCFHCVLCFRL
Trigger: CAGTCTGAAGCACAGGACACAATGAAAACAGGATCATCCACCAACAACAATGAGGAAGAGAAGTCCCGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR GCA 72 bp GATGATCCTGTTTTCATTGTGTCCTGTGCTTCAGACTaGCATTCACCTCGAGTGATCAACCTGCGCATCTTA +
Preference number: 3 (lower is better)
Translates to: DDPVFIVSCASD*HSPRVINLRIL
Trigger: TAAGATGCGCAGGTTGATCACTCGAGGTGAATGGCAGTCTGAAGCACAGGACACAATGAAAACAGGATCATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CCA 72 bp TGCCTTCATTTGATCAAATGTGCACCCACTATCCACTaGAAACAGCCTCCAACCTGTCCCCATTTCTTTTCC +
Preference number: 3 (lower is better)
Translates to: CLHLIKCAPTIH*KQPPTCPHFFS
Trigger: GGAAAAGAAATGGGGACAGGTTGGAGGCTGTTTCCAGTGGATAGTGGGTGCACATTTGATCAAATGAAGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR CCA 72 bp TCTCCAACAGTCGGGACTTCTCTTCCTCATTGTTGTTaGTGGATGATCCTGTTTTCATTGTGTCCTGTGCTT +
Preference number: 3 (lower is better)
Translates to: SPTVGTSLPHCC*WMILFSLCPVL
Trigger: AAGCACAGGACACAATGAAAACAGGATCATCCACCAACAACAATGAGGAAGAGAAGTCCCGACTGTTGGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR TCA 72 bp ATGCAAGGAGGCACACAAGTAAAACATAGACAACCATaGCATATGCACATGAGGAAGACAGCTTGGTGTGCT +
Preference number: 3 (lower is better)
Translates to: MQGGTQVKHRQP*HMHMRKTAWCA
Trigger: AGCACACCAAGCTGTCTTCCTCATGTGCATATGTCATGGTTGTCTATGTTTTACTTGTGTGCCTCCTTGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR CCA 72 bp AGAAGGATGATGGAAGGAGATTCTAATGCTGAGAAATaGAGAGAAAGCCCTGATAATGTAGGAAGACCCCTG +
Preference number: 3 (lower is better)
Translates to: RRMMEGDSNAEK*RESPDNVGRPL
Trigger: CAGGGGTCTTCCTACATTATCAGGGCTTTCTCTCCATTTCTCAGCATTAGAATCTCCTTCCATCATCCTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR-3UTR CAA 90 bp AGTCACACTGTTAACTGCTTTATTGAGATTCAGGGAGATCCTTCCCCCAAGAGACAGAAAAGAACATATTaGCACAGAAACACATCCAGC +
Preference number: 3 (lower is better)
Translates to: SHTVNCFIEIQGDPSPKRQKRTY*HRNTSS
Trigger: GCTGGATGTGTTTCTGTGCAAATATGTTCTTTTCTG...TCTCTTGGGGGAAGGATCTCCCTGAATCTCAATAAAGCAGTTAACAGTGTGACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
3UTR-3UTR CAA 90 bp AGGAGTTGCTGTAGTAACAACTATACAAGACAGCCTATGGGAGACAAACGAGATGATATAACGATCCACTaGTCTGTTTTGGACCAGGAA +
Preference number: 3 (lower is better)
Translates to: RSCCSNNYTRQPMGDKRDDITIH*SVLDQE
Trigger: TTCCTGGTCCAAAACAGACAAGTGGATCGTTATATC...ATCTCGTTTGTCTCCCATAGGCTGTCTTGTATAGTTGTTACTACAGCAACTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR TCA 72 bp AGTATACACAAGACTCAGTCTTCTTCCATCTGCCCTTaGATTATCACTGTTCTGGTCATTCTGCCCCAATTT +
Preference number: 3 (lower is better)
Translates to: SIHKTQSSSICP*IITVLVILPQF
Trigger: AAATTGGGGCAGAATGACCAGAACAGTGATAATTCAAGGGCAGATGGAAGAAGACTGAGTCTTGTGTATACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
3UTR CCA 72 bp CATTCCAGGAGAGAAGAGTATATATATACAAGAGTTTaGGTGCCCAGAAAAGGGAGACGTTTGCAGAAAAGA +
Preference number: 3 (lower is better)
Translates to: HSRREEYIYTRV*VPRKGRRLQKR
Trigger: TCTTTTCTGCAAACGTCTCCCTTTTCTGGGCACCCAAACTCTTGTATATATATACTCTTCTCTCCTGGAATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
3UTR-3UTR CAA 90 bp CTTTGTAACCATAGAAAATGCCGAGCCATGTATTCATCTTCTTGGAGCTGCAGTCAGAAAAGAACATATTaGCACAGAAACACATCCAGC +
Preference number: 3 (lower is better)
Translates to: LCNHRKCRAMYSSSWSCSQKRTY*HRNTSS
Trigger: GCTGGATGTGTTTCTGTGCAAATATGTTCTTTTCTG...ACTGCAGCTCCAAGAAGATGAATACATGGCTCGGCATTTTCTATGGTTACAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR TCA 72 bp AAGAAAAGAAAACCAAGATGCAGTAGTTCTGAGAGATaGTTGTACAGACCCAAAGTGGGACGCATGAGAATA +
Preference number: 3 (lower is better)
Translates to: KKRKPRCSSSER*LYRPKVGRMRI
Trigger: TATTCTCATGCGTCCCACTTTGGGTCTGTACAATCATCTCTCAGAACTACTGCATCTTGGTTTTCTTTTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR-3UTR CAA 90 bp ACAGTCTTAAGAGCTCAAAATAAGGACTTAGTCAAAATGAAGAACCCTGAAGCTAGAAAAGGGAGACGTTaGCAGAAAAGACAGCAAAGA +
Preference number: 3 (lower is better)
Translates to: TVLRAQNKDLVKMKNPEARKGRR*QKRQQR
Trigger: TCTTTGCTGTCTTTTCTGCAAACGTCTCCCTTTTCT...AGCTTCAGGGTTCTTCATTTTGACTAAGTCCTTATTTTGAGCTCTTAAGACTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
3UTR TCA 72 bp GCAAACACAAAAGCAATCAATTATTCCCTCAAGGAATaGTCAAGATTGTTAAAGTATACACAAGACTCAGTC +
Preference number: 3 (lower is better)
Translates to: ANTKAINYSLKE*SRLLKYTQDSV
Trigger: GACTGAGTCTTGTGTATACTTTAACAATCTTGATCATTCCTTGAGGGAATAATTGATTGCTTTTGTGTTTGC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR CCA 90 bp GTTCCACATCCGGGCAGCCTCGGCTACCAGTGTGGACACAGAGCTGCAGCCGGGGGCACTTGCGCACCTTaGGCCCCACCACCTCGCGTT +
Preference number: 4 (lower is better)
Translates to: VPHPGSLGYQCGHRAAAGGTCAP*APPPRV
Trigger: AACGCGAGGTGGTGGGGCCCAAGGTGCGCAAGTGCC...CCCGGCTGCAGCTCTGTGTCCACACTGGTAGCCGAGGCTGCCCGGATGTGGAAC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
CDS-3UTR CCA 90 bp GTGAAAGGGATGCTGCCTCCCGCCCGGTCAGTCCATCTGTCCATGCCTTCATTTCCTGGCAGTGGGGCTTaGGGGTGCTCCACTGGCCCT +
Preference number: 4 (lower is better)
Translates to: VKGMLPPARSVHLSMPSFPGSGA*GCSTGP
Trigger: AGGGCCAGTGGAGCACCCCCAAGCCCCACTGCCAGG...AAATGAAGGCATGGACAGATGGACTGACCGGGCGGGAGGCAGCATCCCTTTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR GCA 90 bp GTGAAAGGGATGCTGCCTCCCGCCCGGTCAGTCCATCTGTCCATGCCTTCATTTGGCCCTGACTACAGATaGTCCGGGAGCTGCCCACCA +
Preference number: 4 (lower is better)
Translates to: VKGMLPPARSVHLSMPSFGPDYR*SGSCPP
Trigger: TGGTGGGCAGCTCCCGGAGCATCTGTAGTCAGGGCC...AAATGAAGGCATGGACAGATGGACTGACCGGGCGGGAGGCAGCATCCCTTTCAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR CCA 90 bp ATCCCGCTCTGCCCCACTAATCCCTGCATGGAACAATCACACAGCTCTTTGCACCCGTCCAGGAGCCGTTaGCCAGGCACTTGCGCACCT +
Preference number: 4 (lower is better)
Translates to: IPLCPTNPCMEQSHSSLHPSRSR*PGTCAP
Trigger: AGGTGCGCAAGTGCCTGGCCAACGGCTCCTGGACGG...GTGCAAAGAGCTGTGTGATTGTTCCATGCAGGGATTAGTGGGGCAGAGCGGGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR CCA 90 bp ACTAATCGAGCCCTTCATCTCATCCCGCTCTGCCCCACTAATCCCTGCATGGAAGCCAGCCCCCGCTCATaGGAAACAGCGCCCCGATGT +
Preference number: 4 (lower is better)
Translates to: TNRALHLIPLCPTNPCMEASPRS*ETAPRC
Trigger: ACATCGGGGCGCTGTTTCCCATGAGCGGGGGCTGGC...TTCCATGCAGGGATTAGTGGGGCAGAGCGGGATGAGATGAAGGGCTCGATTAGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR CCA 90 bp GTGAAAGGGATGCTGCCTCCCGCCCGGTCAGTCCATCTGTCCATGCCTTCATTTGCCAGTGGTGCCTCCTaGAAGCCTCCAGTCTCCTCA +
Preference number: 4 (lower is better)
Translates to: VKGMLPPARSVHLSMPSFASGAS*KPPVSS
Trigger: TGAGGAGACTGGAGGCTTCCAGGAGGCACCACTGGC...AAATGAAGGCATGGACAGATGGACTGACCGGGCGGGAGGCAGCATCCCTTTCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR TCA 90 bp TGTAGCTGCTCGATAAGCGTCCATGCCATCCGGGAGCCGCTGGCATCAAAGACCTACTGCACGCCGTTCTaGGTGTGGCGTTCGATTCAC +
Preference number: 4 (lower is better)
Translates to: CSCSISVHAIREPLASKTYCTPF*VWRSIH
Trigger: GTGAATCGAACGCCACACTCAGAACGGCGTGCAGTA...GGTCTTTGATGCCAGCGGCTCCCGGATGGCATGGACGCTTATCGAGCAGCTACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
CDS-3UTR GCA 90 bp CTCTGCCCCACTAATCCCTGCATGGAACAATCACACAGCTCTTTGCACCTCTCTCGTTGGCCAGGCACTTaGGCACCTTGGGCCCCACCA +
Preference number: 4 (lower is better)
Translates to: LCPTNPCMEQSHSSLHLSRWPGT*APWAPP
Trigger: TGGTGGGGCCCAAGGTGCGCAAGTGCCTGGCCAACG...AGAGAGGTGCAAAGAGCTGTGTGATTGTTCCATGCAGGGATTAGTGGGGCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR GCA 90 bp AGATCCTTCCCCCAAGAGACACCACAGTGTGAAAGGGATGCTGCCTCCCGCCCGGTCTCAATGGTTCGGTaGAAGGGGTCCACAATCTGC +
Preference number: 4 (lower is better)
Translates to: RSFPQETPQCERDAASRPVSMVR*KGSTIC
Trigger: GCAGATTGTGGACCCCTTGCACCGAACCATTGAGAC...CGGGCGGGAGGCAGCATCCCTTTCACACTGTGGTGTCTCTTGGGGGAAGGATCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp TTCTTCCTGTCTGATGAGGAGGAGACTCTTCACATCTGCTCAGCCACCTACTCCGGCACTTGCGCACCTTaGGCCCCACCACCTCGCGTT +
Preference number: 4 (lower is better)
Translates to: FFLSDEEETLHICSATYSGTCAP*APPPRV
Trigger: AACGCGAGGTGGTGGGGCCCAAGGTGCGCAAGTGCC...GGAGTAGGTGGCTGAGCAGATGTGAAGAGTCTCCTCCTCATCAGACAGGAAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR GCA 90 bp CACACACCCACAACCACTGTGCACTCACAGGTGCAGCATATGCAAACACAAGTGAGTGGGGCTTGGGGGTaGTCCACTGGCCCTGACTAC +
Preference number: 4 (lower is better)
Translates to: HTPTTTVHSQVQHMQTQVSGAWG*STGPDY
Trigger: GTAGTCAGGGCCAGTGGAGCACCCCCAAGCCCCACT...CACTTGTGTTTGCATATGCTGCACCTGTGAGTGCACAGTGGTTGTGGGTGTGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR GCA 90 bp CACATCATGCACGCCTACCCAAGCACACCACTGCACACACCCACAACCACTGTGAAGTACTTGGTGGCTTaGCCTGGGTCGCACTTGCTG +
Preference number: 4 (lower is better)
Translates to: HIMHAYPSTPLHTPTTTVKYLVA*PGSHLL
Trigger: CAGCAAGTGCGACCCAGGGCAAGCCACCAAGTACTT...CACAGTGGTTGTGGGTGTGTGCAGTGGTGTGCTTGGGTAGGCGTGCATGATGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR GCA 90 bp GTGAAAGGGATGCTGCCTCCCGCCCGGTCAGTCCATCTGTCCATGCCTTCATTTTCATCTTCTTGGAGCTaGAGTGCTCCAGCTGGGGCA +
Preference number: 4 (lower is better)
Translates to: VKGMLPPARSVHLSMPSFSSSWS*SAPAGA
Trigger: TGCCCCAGCTGGAGCACTGCAGCTCCAAGAAGATGA...AAATGAAGGCATGGACAGATGGACTGACCGGGCGGGAGGCAGCATCCCTTTCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp AGATCCTTCCCCCAAGAGACACCACAGTGTGAAAGGGATGCTGCCTCCCGCCCGCCAGCTGGGGCAGAATaGAGACATCAATGTCTTCCT +
Preference number: 4 (lower is better)
Translates to: RSFPQETPQCERDAASRPPAGAE*RHQCLP
Trigger: AGGAAGACATTGATGTCTCCATTCTGCCCCAGCTGG...CGGGCGGGAGGCAGCATCCCTTTCACACTGTGGTGTCTCTTGGGGGAAGGATCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp GTGAAAGGGATGCTGCCTCCCGCCCGGTCAGTCCATCTGTCCATGCCTTCATTTAAGGCTGCGTCCTGCTaGCTGGAAAGGATCATGGTG +
Preference number: 4 (lower is better)
Translates to: VKGMLPPARSVHLSMPSFKAASC*LERIMV
Trigger: CACCATGATCCTTTCCAGCCAGCAGGACGCAGCCTT...AAATGAAGGCATGGACAGATGGACTGACCGGGCGGGAGGCAGCATCCCTTTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR TCA 90 bp AACACATCATGCACGCCTACCCAAGCACACCACTGCACACACCCACAACCACTGTACTGCACGCCGTTCTaGGTGTGGCGTTCGATTCAC +
Preference number: 4 (lower is better)
Translates to: NTSCTPTQAHHCTHPQPLYCTPF*VWRSIH
Trigger: GTGAATCGAACGCCACACTCAGAACGGCGTGCAGTA...CAGTGGTTGTGGGTGTGTGCAGTGGTGTGCTTGGGTAGGCGTGCATGATGTGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000173823.8
CDS-3UTR TCA 90 bp GACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGCTGAGACTCCAGGCGCACTCCTaGACGGCCACCTCCTCCAGA +
Preference number: 4 (lower is better)
Translates to: DRTSARQTTVIPILRRLRLQAHS*TATSSR
Trigger: TCTGGAGGAGGTGGCCGTTCAGGAGTGCGCCTGGAG...TCTCAGCCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR GCA 90 bp AACACATCATGCACGCCTACCCAAGCACACCACTGCACACACCCACAACCACTGAAGTACTTGGTGGCTTaGCCTGGGTCGCACTTGCTG +
Preference number: 4 (lower is better)
Translates to: NTSCTPTQAHHCTHPQPLKYLVA*PGSHLL
Trigger: CAGCAAGTGCGACCCAGGGCAAGCCACCAAGTACTT...CAGTGGTTGTGGGTGTGTGCAGTGGTGTGCTTGGGTAGGCGTGCATGATGTGTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR GCA 90 bp CACACACCCACAACCACTGTGCACTCACAGGTGCAGCATATGCAAACACAAGTGGGCAAAGGCGAAGGCTaGGTCCTGCTGGCTGGAAAG +
Preference number: 4 (lower is better)
Translates to: HTPTTTVHSQVQHMQTQVGKGEG*VLLAGK
Trigger: CTTTCCAGCCAGCAGGACGCAGCCTTCGCCTTTGCC...CACTTGTGTTTGCATATGCTGCACCTGTGAGTGCACAGTGGTTGTGGGTGTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp AGATCCTTCCCCCAAGAGACACCACAGTGTGAAAGGGATGCTGCCTCCCGCCCGTTTGTGAAGACTGTGTaGACCCACCAGATCTTGGTG +
Preference number: 4 (lower is better)
Translates to: RSFPQETPQCERDAASRPFVKTV*THQILV
Trigger: CACCAAGATCTGGTGGGTCCACACAGTCTTCACAAA...CGGGCGGGAGGCAGCATCCCTTTCACACTGTGGTGTCTCTTGGGGGAAGGATCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp TGTGAAGACTGTGTGGACCCACCAGATCTTGGTGAACATAGAGCCATAGCCCAGGGGTGCCACAGCGACTaGGTGTGTCCATATCCGTCC +
Preference number: 4 (lower is better)
Translates to: CEDCVDPPDLGEHRAIAQGCHSD*VCPYPS
Trigger: GGACGGATATGGACACACCCAGTCGCTGTGGCACCC...CTGGGCTATGGCTCTATGTTCACCAAGATCTGGTGGGTCCACACAGTCTTCACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CAA 72 bp TGTGGAGTGTGGCGGATGGATGTGTCCGAAAGAACGTaGGAAACCGCTGTCGGTTTGACAAGGCTGGTGAGC +
Preference number: 4 (lower is better)
Translates to: CGVWRMDVSERT*ETAVGLTRLVS
Trigger: GCTCACCAGCCTTGTCAAACCGACAGCGGTTTCCAACGTTCTTTCGGACACATCCATCCGCCACACTCCACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
CDS-3UTR TCA 90 bp GTTAACTGCTTTATTGAGATTCAGGGAGATCCTTCCCCCAAGAGACACCACAGTCTCCAGGCGCACTCCTaGACGGCCACCTCCTCCAGA +
Preference number: 4 (lower is better)
Translates to: VNCFIEIQGDPSPKRHHSLQAHS*TATSSR
Trigger: TCTGGAGGAGGTGGCCGTTCAGGAGTGCGCCTGGAG...ACTGTGGTGTCTCTTGGGGGAAGGATCTCCCTGAATCTCAATAAAGCAGTTAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR GCA 90 bp ACTAATCGAGCCCTTCATCTCATCCCGCTCTGCCCCACTAATCCCTGCATGGAAATCATAGGCCAGTGGTaGCTCCTGGAAGCCTCCAGT +
Preference number: 4 (lower is better)
Translates to: TNRALHLIPLCPTNPCMEIIGQW*LLEASS
Trigger: ACTGGAGGCTTCCAGGAGGCACCACTGGCCTATGAT...TTCCATGCAGGGATTAGTGGGGCAGAGCGGGATGAGATGAAGGGCTCGATTAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR CCA 90 bp CTACCATGGACCAAGCAGATCCAGGCATTGGGATGCATAATTAGCCTAGTTCTTGGCTCCATCCAGAGCTaGGAGGTCCCCACCCGTCAG +
Preference number: 4 (lower is better)
Translates to: LPWTKQIQALGCIISLVLGSIQS*EVPTRQ
Trigger: CTGACGGGTGGGGACCTCCCAGCTCTGGATGGAGCC...AAGAACTAGGCTAATTATGCATCCCAATGCCTGGATCTGCTTGGTCCATGGTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR CCA 90 bp AGAATGACATGTATTTCTAAGAGGGGGATTGGAGCTTGTTCTCCACCCTCTTCCGCCAGCCCCCGCTCATaGGAAACAGCGCCCCGATGT +
Preference number: 4 (lower is better)
Translates to: RMTCISKRGIGACSPPSSASPRS*ETAPRC
Trigger: ACATCGGGGCGCTGTTTCCCATGAGCGGGGGCTGGC...GGAAGAGGGTGGAGAACAAGCTCCAATCCCCCTCTTAGAAATACATGTCATTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
CDS-3UTR CCA 90 bp GTTAACTGCTTTATTGAGATTCAGGGAGATCCTTCCCCCAAGAGACACCACAGTGCCAGCCCCCGCTCATaGGAAACAGCGCCCCGATGT +
Preference number: 4 (lower is better)
Translates to: VNCFIEIQGDPSPKRHHSASPRS*ETAPRC
Trigger: ACATCGGGGCGCTGTTTCCCATGAGCGGGGGCTGGC...ACTGTGGTGTCTCTTGGGGGAAGGATCTCCCTGAATCTCAATAAAGCAGTTAAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
CDS-3UTR CCA 90 bp GACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGCTGAGACCTCGGCTACCAGTGTaGACACAGAGCTGCAGCCGG +
Preference number: 4 (lower is better)
Translates to: DRTSARQTTVIPILRRLRPRLPV*TQSCSR
Trigger: CCGGCTGCAGCTCTGTGTCCACACTGGTAGCCGAGG...TCTCAGCCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp CACATCATGCACGCCTACCCAAGCACACCACTGCACACACCCACAACCACTGTGACAAGGCTGGTGAGCTaGAGCCATATGAGAGCACAA +
Preference number: 4 (lower is better)
Translates to: HIMHAYPSTPLHTPTTTVTRLVS*SHMRAQ
Trigger: TTGTGCTCTCATATGGCTCCAGCTCACCAGCCTTGT...CACAGTGGTTGTGGGTGTGTGCAGTGGTGTGCTTGGGTAGGCGTGCATGATGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp CTCTGCCCCACTAATCCCTGCATGGAACAATCACACAGCTCTTTGCACCTCTCTACCCGGGTGGGATTGTaGAGTGTGGCGGATGGATGT +
Preference number: 4 (lower is better)
Translates to: LCPTNPCMEQSHSSLHLSTRVGL*SVADGC
Trigger: ACATCCATCCGCCACACTCCACAATCCCACCCGGGT...AGAGAGGTGCAAAGAGCTGTGTGATTGTTCCATGCAGGGATTAGTGGGGCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR CCA 90 bp CCAATACTCAGAAGGCTGAGACAGGAAGCCTGCCCTGACACGAGTCAGGGCAACACCTCGGTAGTCTGCTaGATGGTGGCAATCTTCTTC +
Preference number: 4 (lower is better)
Translates to: PILRRLRQEACPDTSQGNTSVVC*MVAIFF
Trigger: GAAGAAGATTGCCACCATCCAGCAGACTACCGAGGT...GTTGCCCTGACTCGTGTCAGGGCAGGCTTCCTGTCTCAGCCTTCTGAGTATTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR TCA 90 bp AGAATGACATGTATTTCTAAGAGGGGGATTGGAGCTTGTTCTCCACCCTCTTCCGTGCTCCACTGGCCCTaGCTACAGATGCTCCGGGAG +
Preference number: 4 (lower is better)
Translates to: RMTCISKRGIGACSPPSSVLHWP*LQMLRE
Trigger: CTCCCGGAGCATCTGTAGTCAGGGCCAGTGGAGCAC...GGAAGAGGGTGGAGAACAAGCTCCAATCCCCCTCTTAGAAATACATGTCATTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR TCA 90 bp ACTAATCGAGCCCTTCATCTCATCCCGCTCTGCCCCACTAATCCCTGCATGGAATCTCCTCCTTCTTTGTaGAGACTGTGTGGACCCACC +
Preference number: 4 (lower is better)
Translates to: TNRALHLIPLCPTNPCMESPPSL*RLCGPT
Trigger: GGTGGGTCCACACAGTCTTCACAAAGAAGGAGGAGA...TTCCATGCAGGGATTAGTGGGGCAGAGCGGGATGAGATGAAGGGCTCGATTAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR TCA 90 bp CCCGGTCAGTCCATCTGTCCATGCCTTCATTTGATCAAATGTGCACCCACTATCTGCCGAGACTGGAGCTaGTGGCGCAGTTCAGAGACA +
Preference number: 4 (lower is better)
Translates to: PGQSICPCLHLIKCAPTICRDWS*WRSSET
Trigger: TGTCTCTGAACTGCGCCATCAGCTCCAGTCTCGGCA...GATAGTGGGTGCACATTTGATCAAATGAAGGCATGGACAGATGGACTGACCGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp TGGACCAAGCAGATCCAGGCATTGGGATGCATAATTAGCCTAGTTCTTGTGTGCGAGCTGCCCACCAGATaGAAGTCGGGGTCACATCGG +
Preference number: 4 (lower is better)
Translates to: WTKQIQALGCIISLVLVCELPTR*KSGSHR
Trigger: CCGATGTGACCCCGACTTCCATCTGGTGGGCAGCTC...GCACACAAGAACTAGGCTAATTATGCATCCCAATGCCTGGATCTGCTTGGTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR CCA 90 bp TACACAAGACTCAGTCTTCTTCCATCTGCCCTTGAATTATCACTGTTCTGGTCACCTGGCAGTGGGGCTTaGGGGTGCTCCACTGGCCCT +
Preference number: 4 (lower is better)
Translates to: YTRLSLLPSALELSLFWSPGSGA*GCSTGP
Trigger: AGGGCCAGTGGAGCACCCCCAAGCCCCACTGCCAGG...TGACCAGAACAGTGATAATTCAAGGGCAGATGGAAGAAGACTGAGTCTTGTGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR CCA 90 bp TTCCAGGAGAGAAGAGTATATATATACAAGAGTTTGGGTGCCCAGAAAAGGGAGCCTGGCAGTGGGGCTTaGGGGTGCTCCACTGGCCCT +
Preference number: 4 (lower is better)
Translates to: FQERRVYIYKSLGAQKREPGSGA*GCSTGP
Trigger: AGGGCCAGTGGAGCACCCCCAAGCCCCACTGCCAGG...CTCCCTTTTCTGGGCACCCAAACTCTTGTATATATATACTCTTCTCTCCTGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR CCA 90 bp CTACCATGGACCAAGCAGATCCAGGCATTGGGATGCATAATTAGCCTAGTTCTTGGCGTTCGATTCACCTaGCAGTGGGGCTTGGGGGTG +
Preference number: 4 (lower is better)
Translates to: LPWTKQIQALGCIISLVLGVRFT*QWGLGV
Trigger: CACCCCCAAGCCCCACTGCCAGGTGAATCGAACGCC...AAGAACTAGGCTAATTATGCATCCCAATGCCTGGATCTGCTTGGTCCATGGTAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR CCA 90 bp CCCGGTCAGTCCATCTGTCCATGCCTTCATTTGATCAAATGTGCACCCACTATCACCCGGGTGGGATTGTaGAGTGTGGCGGATGGATGT +
Preference number: 4 (lower is better)
Translates to: PGQSICPCLHLIKCAPTITRVGL*SVADGC
Trigger: ACATCCATCCGCCACACTCCACAATCCCACCCGGGT...GATAGTGGGTGCACATTTGATCAAATGAAGGCATGGACAGATGGACTGACCGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp TCTTCCCAAGATGCTCAGAGTTCCTTAGAGAACGGTTTCCAAGTTCTGAGGCGCAGAGTTTCACCCGGGTaGGATTGTGGAGTGTGGCGG +
Preference number: 4 (lower is better)
Translates to: SSQDAQSSLENGFQVLRRRVSPG*DCGVWR
Trigger: CCGCCACACTCCACAATCCCACCCGGGTGAAACTCT...GCGCCTCAGAACTTGGAAACCGTTCTCTAAGGAACTCTGAGCATCTTGGGAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR CCA 90 bp GACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGCTGAGAGCCAGTGGTGCCTCCTaGAAGCCTCCAGTCTCCTCA +
Preference number: 4 (lower is better)
Translates to: DRTSARQTTVIPILRRLRASGAS*KPPVSS
Trigger: TGAGGAGACTGGAGGCTTCCAGGAGGCACCACTGGC...TCTCAGCCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp CACATCATGCACGCCTACCCAAGCACACCACTGCACACACCCACAACCACTGTGTTTGTGAAGACTGTGTaGACCCACCAGATCTTGGTG +
Preference number: 4 (lower is better)
Translates to: HIMHAYPSTPLHTPTTTVFVKTV*THQILV
Trigger: CACCAAGATCTGGTGGGTCCACACAGTCTTCACAAA...CACAGTGGTTGTGGGTGTGTGCAGTGGTGTGCTTGGGTAGGCGTGCATGATGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp TTCCAGGAGAGAAGAGTATATATATACAAGAGTTTGGGTGCCCAGAAAAGGGAGCCCTCACCCTGGCAGTaGGGCTTGGGGGTGCTCCAC +
Preference number: 4 (lower is better)
Translates to: FQERRVYIYKSLGAQKREPSPWQ*GLGVLH
Trigger: GTGGAGCACCCCCAAGCCCCACTGCCAGGGTGAGGG...CTCCCTTTTCTGGGCACCCAAACTCTTGTATATATATACTCTTCTCTCCTGGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
3UTR CAA 72 bp CTCCCGCCCGGTCAGTCCATCTGTCCATGCCTTCATTaGATCAAATGTGCACCCACTATCCACTGGAAACAG +
Preference number: 4 (lower is better)
Translates to: LPPGQSICPCLH*IKCAPTIHWKQ
Trigger: CTGTTTCCAGTGGATAGTGGGTGCACATTTGATCAAATGAAGGCATGGACAGATGGACTGACCGGGCGGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
CDS-3UTR TCA 90 bp AGTCACACTGTTAACTGCTTTATTGAGATTCAGGGAGATCCTTCCCCCAAGAGATCAAGCCACGGTACCTaGTGCCACCTTCCCAGGGCG +
Preference number: 4 (lower is better)
Translates to: SHTVNCFIEIQGDPSPKRSSHGT*CHLPRA
Trigger: CGCCCTGGGAAGGTGGCATCAGGTACCGTGGCTTGA...TCTCTTGGGGGAAGGATCTCCCTGAATCTCAATAAAGCAGTTAACAGTGTGACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR TCA 90 bp GTCTTCTTCCATCTGCCCTTGAATTATCACTGTTCTGGTCATTCTGCCCCAATTTCAAGCCACGGTACCTaGTGCCACCTTCCCAGGGCG +
Preference number: 4 (lower is better)
Translates to: VFFHLPLNYHCSGHSAPISSHGT*CHLPRA
Trigger: CGCCCTGGGAAGGTGGCATCAGGTACCGTGGCTTGA...AATTGGGGCAGAATGACCAGAACAGTGATAATTCAAGGGCAGATGGAAGAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR TCA 90 bp AAAGAAGACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGTCAAGCCACGGTACCTaGTGCCACCTTCCCAGGGCG +
Preference number: 4 (lower is better)
Translates to: KEDRTSARQTTVIPILRRSSHGT*CHLPRA
Trigger: CGCCCTGGGAAGGTGGCATCAGGTACCGTGGCTTGA...CCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTCTTCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000173823.8
CDS-3UTR TCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGGTGAGTCCCCTGGAAGAAGCAACATTTAAGCCACAGGCAGGAAATTaGTGGCCTTCACCTGGTCGC +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVVSPLEEATFKPQAGN*WPSPGR
Trigger: GCGACCAGGTGAAGGCCATCAATTTCCTGCCTGTGG...CTTAAATGTTGCTTCTTCCAGGGGACTCACCACACACACACACACACACACACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000173823.8
CDS-3UTR TCA 90 bp AACACATCATGCACGCCTACCCAAGCACACCACTGCACACACCCACAACCACTGCAGCATACCACCCGATaGGAAACCAGACATACTTCT +
Preference number: 4 (lower is better)
Translates to: NTSCTPTQAHHCTHPQPLQHTTR*ETRHTS
Trigger: AGAAGTATGTCTGGTTTCTCATCGGGTGGTATGCTG...CAGTGGTTGTGGGTGTGTGCAGTGGTGTGCTTGGGTAGGCGTGCATGATGTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR TCA 90 bp AGATCCTTCCCCCAAGAGACACCACAGTGTGAAAGGGATGCTGCCTCCCGCCCGGATAAAGAGTTTCTGTaGCAGGAAACGGAATGTCTT +
Preference number: 4 (lower is better)
Translates to: RSFPQETPQCERDAASRPDKEFL*QETECL
Trigger: AAGACATTCCGTTTCCTGTCACAGAAACTCTTTATC...CGGGCGGGAGGCAGCATCCCTTTCACACTGTGGTGTCTCTTGGGGGAAGGATCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR GCA 90 bp TCCAGGAGAGAAGAGTATATATATACAAGAGTTTGGGTGCCCAGAAAAGGGAGACGTTGGCCAGGCACTTaGGCACCTTGGGCCCCACCA +
Preference number: 4 (lower is better)
Translates to: SRREEYIYTRVWVPRKGRRWPGT*APWAPP
Trigger: TGGTGGGGCCCAAGGTGCGCAAGTGCCTGGCCAACG...TCTCCCTTTTCTGGGCACCCAAACTCTTGTATATATATACTCTTCTCTCCTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR GCA 90 bp AGGAGTTGCTGTAGTAACAACTATACAAGACAGCCTATGGGAGACAAACGAGATCGTTGGCCAGGCACTTaGGCACCTTGGGCCCCACCA +
Preference number: 4 (lower is better)
Translates to: RSCCSNNYTRQPMGDKRDRWPGT*APWAPP
Trigger: TGGTGGGGCCCAAGGTGCGCAAGTGCCTGGCCAACG...ATCTCGTTTGTCTCCCATAGGCTGTCTTGTATAGTTGTTACTACAGCAACTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000173823.8
CDS-3UTR GCA 90 bp AGGAGAGGAGAGGATATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATCATAGGCCAGTGGTaGCTCCTGGAAGCCTCCAGT +
Preference number: 4 (lower is better)
Translates to: RRGEDMVCVCVCVCVCVCIIGQW*LLEASS
Trigger: ACTGGAGGCTTCCAGGAGGCACCACTGGCCTATGAT...ACACACACACACACACACACACACACACACACACACCATATCCTCTCCTCTCCT
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR GCA 90 bp AGTTGCTGTAGTAACAACTATACAAGACAGCCTATGGGAGACAAACGAGATGCCCTCGATAAGCGTCCATaGCATCCGGGAGCCGCTGGC +
Preference number: 4 (lower is better)
Translates to: SCCSNNYTRQPMGDKRDALDKRP*HPGAAG
Trigger: GCCAGCGGCTCCCGGATGGCATGGACGCTTATCGAG...GGCATCTCGTTTGTCTCCCATAGGCTGTCTTGTATAGTTGTTACTACAGCAACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR GCA 90 bp AGTCACACTGTTAACTGCTTTATTGAGATTCAGGGAGATCCTTCCCCCAAGAGACTCGATAAGCGTCCATaGCATCCGGGAGCCGCTGGC +
Preference number: 4 (lower is better)
Translates to: SHTVNCFIEIQGDPSPKRLDKRP*HPGAAG
Trigger: GCCAGCGGCTCCCGGATGGCATGGACGCTTATCGAG...TCTCTTGGGGGAAGGATCTCCCTGAATCTCAATAAAGCAGTTAACAGTGTGACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR GCA 90 bp ACCATGACATATGCACATGAGGAAGACAGCTTGGTGTGCTCAACACATCATGCACTGCCGCCCTGTAGCTaGTCGATAAGCGTCCATGCC +
Preference number: 4 (lower is better)
Translates to: TMTYAHEEDSLVCSTHHALPPCS*SISVHA
Trigger: GGCATGGACGCTTATCGAGCAGCTACAGGGCGGCAG...TGCATGATGTGTTGAGCACACCAAGCTGTCTTCCTCATGTGCATATGTCATGGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp CATTCCAGGAGAGAAGAGTATATATATACAAGAGTTTGGGTGCCCAGAAAAGGGGGCACTTGCGCACCTTaGGCCCCACCACCTCGCGTT +
Preference number: 4 (lower is better)
Translates to: HSRREEYIYTRVWVPRKGGTCAP*APPPRV
Trigger: AACGCGAGGTGGTGGGGCCCAAGGTGCGCAAGTGCC...CCCTTTTCTGGGCACCCAAACTCTTGTATATATATACTCTTCTCTCCTGGAATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR CCA 90 bp CATTCCAGGAGAGAAGAGTATATATATACAAGAGTTTGGGTGCCCAGAAAAGGGCCGTCCAGGAGCCGTTaGCCAGGCACTTGCGCACCT +
Preference number: 4 (lower is better)
Translates to: HSRREEYIYTRVWVPRKGPSRSR*PGTCAP
Trigger: AGGTGCGCAAGTGCCTGGCCAACGGCTCCTGGACGG...CCCTTTTCTGGGCACCCAAACTCTTGTATATATATACTCTTCTCTCCTGGAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR CCA 90 bp CATTCCAGGAGAGAAGAGTATATATATACAAGAGTTTGGGTGCCCAGAAAAGGGGGCTCCATCCAGAGCTaGGAGGTCCCCACCCGTCAG +
Preference number: 4 (lower is better)
Translates to: HSRREEYIYTRVWVPRKGGSIQS*EVPTRQ
Trigger: CTGACGGGTGGGGACCTCCCAGCTCTGGATGGAGCC...CCCTTTTCTGGGCACCCAAACTCTTGTATATATATACTCTTCTCTCCTGGAATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR CCA 90 bp AAAGAAGACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGCCTCGGCTACCAGTGTaGACACAGAGCTGCAGCCGG +
Preference number: 4 (lower is better)
Translates to: KEDRTSARQTTVIPILRRPRLPV*TQSCSR
Trigger: CCGGCTGCAGCTCTGTGTCCACACTGGTAGCCGAGG...CCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTCTTCTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp GACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGCTGAGAAGCATCATAGGCCAGTaGTGCCTCCTGGAAGCCTCC +
Preference number: 4 (lower is better)
Translates to: DRTSARQTTVIPILRRLRSIIGQ*CLLEAS
Trigger: GGAGGCTTCCAGGAGGCACCACTGGCCTATGATGCT...TCTCAGCCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp AGGAGAGGAGAGGATATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGGCTGCGTCCTGCTaGCTGGAAAGGATCATGGTG +
Preference number: 4 (lower is better)
Translates to: RRGEDMVCVCVCVCVCVCKAASC*LERIMV
Trigger: CACCATGATCCTTTCCAGCCAGCAGGACGCAGCCTT...ACACACACACACACACACACACACACACACACACACCATATCCTCTCCTCTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp TTTCCGGGCTTCGGTCTCATAGAAAAGTCCCACGATGATTCGAGCATCTTGACGTGGCGTTCGATTCACTaGCAGCAGGAAAGACGGGGA +
Preference number: 4 (lower is better)
Translates to: FPGFGLIEKSHDDSSILTWRSIH*QQERRG
Trigger: TCCCCGTCTTTCCTGCTGCCAGTGAATCGAACGCCA...CGTCAAGATGCTCGAATCATCGTGGGACTTTTCTATGAGACCGAAGCCCGGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
CDS-3UTR TCA 90 bp TTCCAGGAGAGAAGAGTATATATATACAAGAGTTTGGGTGCCCAGAAAAGGGAGTCAAGCCACGGTACCTaGTGCCACCTTCCCAGGGCG +
Preference number: 4 (lower is better)
Translates to: FQERRVYIYKSLGAQKRESSHGT*CHLPRA
Trigger: CGCCCTGGGAAGGTGGCATCAGGTACCGTGGCTTGA...CTCCCTTTTCTGGGCACCCAAACTCTTGTATATATATACTCTTCTCTCCTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR TCA 90 bp TCCAGGAGAGAAGAGTATATATATACAAGAGTTTGGGTGCCCAGAAAAGGGAGAGTGCTCCACTGGCCCTaGCTACAGATGCTCCGGGAG +
Preference number: 4 (lower is better)
Translates to: SRREEYIYTRVWVPRKGRVLHWP*LQMLRE
Trigger: CTCCCGGAGCATCTGTAGTCAGGGCCAGTGGAGCAC...TCTCCCTTTTCTGGGCACCCAAACTCTTGTATATATATACTCTTCTCTCCTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR TCA 90 bp CATTCCAGGAGAGAAGAGTATATATATACAAGAGTTTGGGTGCCCAGAAAAGGGGTGCTCCACTGGCCCTaGCTACAGATGCTCCGGGAG +
Preference number: 4 (lower is better)
Translates to: HSRREEYIYTRVWVPRKGVLHWP*LQMLRE
Trigger: CTCCCGGAGCATCTGTAGTCAGGGCCAGTGGAGCAC...CCCTTTTCTGGGCACCCAAACTCTTGTATATATATACTCTTCTCTCCTGGAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR GCA 90 bp TTCCAGGAGAGAAGAGTATATATATACAAGAGTTTGGGTGCCCAGAAAAGGGAGAGTGGGGCTTGGGGGTaGTCCACTGGCCCTGACTAC +
Preference number: 4 (lower is better)
Translates to: FQERRVYIYKSLGAQKRESGAWG*STGPDY
Trigger: GTAGTCAGGGCCAGTGGAGCACCCCCAAGCCCCACT...CTCCCTTTTCTGGGCACCCAAACTCTTGTATATATATACTCTTCTCTCCTGGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR GCA 90 bp TACACAAGACTCAGTCTTCTTCCATCTGCCCTTGAATTATCACTGTTCTGGTCAAGTGGGGCTTGGGGGTaGTCCACTGGCCCTGACTAC +
Preference number: 4 (lower is better)
Translates to: YTRLSLLPSALELSLFWSSGAWG*STGPDY
Trigger: GTAGTCAGGGCCAGTGGAGCACCCCCAAGCCCCACT...TGACCAGAACAGTGATAATTCAAGGGCAGATGGAAGAAGACTGAGTCTTGTGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR GCA 90 bp CCCGGTCAGTCCATCTGTCCATGCCTTCATTTGATCAAATGTGCACCCACTATCGTCTCAATGGTTCGGTaGAAGGGGTCCACAATCTGC +
Preference number: 4 (lower is better)
Translates to: PGQSICPCLHLIKCAPTIVSMVR*KGSTIC
Trigger: GCAGATTGTGGACCCCTTGCACCGAACCATTGAGAC...GATAGTGGGTGCACATTTGATCAAATGAAGGCATGGACAGATGGACTGACCGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR GCA 90 bp AGGAGAAGGATGATGGAAGGAGATTCTAATGCTGAGAAATGGAGAGAAAGCCCTGGCAAAGGCGAAGGCTaGGTCCTGCTGGCTGGAAAG +
Preference number: 4 (lower is better)
Translates to: RRRMMEGDSNAEKWRESPGKGEG*VLLAGK
Trigger: CTTTCCAGCCAGCAGGACGCAGCCTTCGCCTTTGCC...AGGGCTTTCTCTCCATTTCTCAGCATTAGAATCTCCTTCCATCATCCTTCTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR GCA 90 bp TCCAGGAGAGAAGAGTATATATATACAAGAGTTTGGGTGCCCAGAAAAGGGAGAGGCACCCTCATCAGCTaGAGGCAGGCAGCTGTTCCC +
Preference number: 4 (lower is better)
Translates to: SRREEYIYTRVWVPRKGRGTLIS*RQAAVP
Trigger: GGGAACAGCTGCCTGCCTGCAGCTGATGAGGGTGCC...TCTCCCTTTTCTGGGCACCCAAACTCTTGTATATATATACTCTTCTCTCCTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR GCA 90 bp TTCCAGGAGAGAAGAGTATATATATACAAGAGTTTGGGTGCCCAGAAAAGGGAGGGCACCCTCATCAGCTaGAGGCAGGCAGCTGTTCCC +
Preference number: 4 (lower is better)
Translates to: FQERRVYIYKSLGAQKREGTLIS*RQAAVP
Trigger: GGGAACAGCTGCCTGCCTGCAGCTGATGAGGGTGCC...CTCCCTTTTCTGGGCACCCAAACTCTTGTATATATATACTCTTCTCTCCTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR CCA 90 bp GACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGCTGAGATTCGGACACAGCGACTaGGTGTGTCCATATCCGTCC +
Preference number: 4 (lower is better)
Translates to: DRTSARQTTVIPILRRLRFGHSD*VCPYPS
Trigger: GGACGGATATGGACACACCCAGTCGCTGTGTCCGAA...TCTCAGCCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR CCA 90 bp ATCCCGCTCTGCCCCACTAATCCCTGCATGGAACAATCACACAGCTCTTTGCACGGGTCAAATAAGACTTaGAGCAGATTCGGACACAGC +
Preference number: 4 (lower is better)
Translates to: IPLCPTNPCMEQSHSSLHGSNKT*SRFGHS
Trigger: GCTGTGTCCGAATCTGCTCCAAGTCTTATTTGACCC...GTGCAAAGAGCTGTGTGATTGTTCCATGCAGGGATTAGTGGGGCAGAGCGGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR CCA 90 bp AGGAGAGGAGAGGATATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCGCACTTGCTGTCGTaGTGGATAAGCTTGAGCTCG +
Preference number: 4 (lower is better)
Translates to: RRGEDMVCVCVCVCVCVCSHLLS*WISLSS
Trigger: CGAGCTCAAGCTTATCCACCACGACAGCAAGTGCGA...ACACACACACACACACACACACACACACACACACACCATATCCTCTCCTCTCCT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp GTTAACTGCTTTATTGAGATTCAGGGAGATCCTTCCCCCAAGAGACACCACAGTAGAGTTTCACCCGGGTaGGATTGTGGAGTGTGGCGG +
Preference number: 4 (lower is better)
Translates to: VNCFIEIQGDPSPKRHHSRVSPG*DCGVWR
Trigger: CCGCCACACTCCACAATCCCACCCGGGTGAAACTCT...ACTGTGGTGTCTCTTGGGGGAAGGATCTCCCTGAATCTCAATAAAGCAGTTAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp AACATATTTGCACAGAAACACATCCAGCTGCCTAGGAGAGGAGAGGATATGGTGATCTCCGTGGTGATATaGCCCTCCACCGCCTCAGTC +
Preference number: 4 (lower is better)
Translates to: NIFAQKHIQLPRRGEDMVISVVI*PSTASV
Trigger: GACTGAGGCGGTGGAGGGCCATATCACCACGGAGAT...CACCATATCCTCTCCTCTCCTAGGCAGCTGGATGTGTTTCTGTGCAAATATGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp ATCCCGCTCTGCCCCACTAATCCCTGCATGGAACAATCACACAGCTCTTTGCACAGGAAAGATCATCCTTaGTGCTGTCGTAGTAGCCGA +
Preference number: 4 (lower is better)
Translates to: IPLCPTNPCMEQSHSSLHRKDHP*CCRSSR
Trigger: TCGGCTACTACGACAGCACCAAGGATGATCTTTCCT...GTGCAAAGAGCTGTGTGATTGTTCCATGCAGGGATTAGTGGGGCAGAGCGGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR CCA 90 bp TCTTCCCAAGATGCTCAGAGTTCCTTAGAGAACGGTTTCCAAGTTCTGAGGCGCGAACAATGCCCAGGCTaGAGAGAACTGAGACGGAGA +
Preference number: 4 (lower is better)
Translates to: SSQDAQSSLENGFQVLRREQCPG*RELRRR
Trigger: TCTCCGTCTCAGTTCTCTCCAGCCTGGGCATTGTTC...GCGCCTCAGAACTTGGAAACCGTTCTCTAAGGAACTCTGAGCATCTTGGGAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR CCA 90 bp ACACCCACAACCACTGTGCACTCACAGGTGCAGCATATGCAAACACAAGTGATACTGCAGTGCTCCAGCTaGGGCAGAATGGAGACATCA +
Preference number: 4 (lower is better)
Translates to: TPTTTVHSQVQHMQTQVILQCSS*GRMETS
Trigger: TGATGTCTCCATTCTGCCCCAGCTGGAGCACTGCAG...TATCACTTGTGTTTGCATATGCTGCACCTGTGAGTGCACAGTGGTTGTGGGTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp TTCTTCCTGTCTGATGAGGAGGAGACTCTTCACATCTGCTCAGCCACCTACTCCATGCCCACGGCCCTGTaGTCATTGATCTTTTCAGTG +
Preference number: 4 (lower is better)
Translates to: FFLSDEEETLHICSATYSMPTAL*SLIFSV
Trigger: CACTGAAAAGATCAATGACCACAGGGCCGTGGGCAT...GGAGTAGGTGGCTGAGCAGATGTGAAGAGTCTCCTCCTCATCAGACAGGAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR CAA 72 bp ACGTACTGGGGAAGAGCCTGCTTAATCATGTGCATGTaGGGTGCACATGCCTCTGCTGAAAGAAGACAGGAC +
Preference number: 4 (lower is better)
Translates to: TYWGRACLIMCM*GAHASAERRQD
Trigger: GTCCTGTCTTCTTTCAGCAGAGGCATGTGCACCCAACATGCACATGATTAAGCAGGCTCTTCCCCAGTACGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
3UTR CAA 72 bp CCTCTCTGCTTCAAAGCCTTTTCATTAACTCCAATCTaGAGAGCCTGGGCTTCTCGCTTCCTGGAGCCCACT +
Preference number: 4 (lower is better)
Translates to: PLCFKAFSLTPI*RAWASRFLEPT
Trigger: AGTGGGCTCCAGGAAGCGAGAAGCCCAGGCTCTCAAGATTGGAGTTAATGAAAAGGCTTTGAAGCAGAGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR TCA 90 bp ACACCCACAACCACTGTGCACTCACAGGTGCAGCATATGCAAACACAAGTGATACGGCCCTGTGGTCATTaGTCTTTTCAGTGGACACAC +
Preference number: 4 (lower is better)
Translates to: TPTTTVHSQVQHMQTQVIRPCGH*SFQWTH
Trigger: GTGTGTCCACTGAAAAGATCAATGACCACAGGGCCG...TATCACTTGTGTTTGCATATGCTGCACCTGTGAGTGCACAGTGGTTGTGGGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR TCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGGTGAGTCCCCTGGAAGAAGCAACATTTAAGCGGCCCTGTGGTCATTaGTCTTTTCAGTGGACACAC +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVVSPLEEATFKRPCGH*SFQWTH
Trigger: GTGTGTCCACTGAAAAGATCAATGACCACAGGGCCG...CTTAAATGTTGCTTCTTCCAGGGGACTCACCACACACACACACACACACACACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR TCA 90 bp AGTCACACTGTTAACTGCTTTATTGAGATTCAGGGAGATCCTTCCCCCAAGAGATGCCGAGACTGGAGCTaGTGGCGCAGTTCAGAGACA +
Preference number: 4 (lower is better)
Translates to: SHTVNCFIEIQGDPSPKRCRDWS*WRSSET
Trigger: TGTCTCTGAACTGCGCCATCAGCTCCAGTCTCGGCA...TCTCTTGGGGGAAGGATCTCCCTGAATCTCAATAAAGCAGTTAACAGTGTGACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR GCA 90 bp AACATATTTGCACAGAAACACATCCAGCTGCCTAGGAGAGGAGAGGATATGGTGGAGTCAGGATATCCATaGCCACCAGCAGGCCTACAG +
Preference number: 4 (lower is better)
Translates to: NIFAQKHIQLPRRGEDMVESGYP*PPAGLQ
Trigger: CTGTAGGCCTGCTGGTGGGCATGGATATCCTGACTC...CACCATATCCTCTCCTCTCCTAGGCAGCTGGATGTGTTTCTGTGCAAATATGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp AAGTATACACAAGACTCAGTCTTCTTCCATCTGCCCTTGAATTATCACTGTTCTGGCTCCATCCAGAGCTaGGAGGTCCCCACCCGTCAG +
Preference number: 4 (lower is better)
Translates to: KYTQDSVFFHLPLNYHCSGSIQS*EVPTRQ
Trigger: CTGACGGGTGGGGACCTCCCAGCTCTGGATGGAGCC...AGAACAGTGATAATTCAAGGGCAGATGGAAGAAGACTGAGTCTTGTGTATACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR CCA 90 bp AGGAGAAGGATGATGGAAGGAGATTCTAATGCTGAGAAATGGAGAGAAAGCCCTATCTCCGTGGTGATATaGCCCTCCACCGCCTCAGTC +
Preference number: 4 (lower is better)
Translates to: RRRMMEGDSNAEKWRESPISVVI*PSTASV
Trigger: GACTGAGGCGGTGGAGGGCCATATCACCACGGAGAT...AGGGCTTTCTCTCCATTTCTCAGCATTAGAATCTCCTTCCATCATCCTTCTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp AGGAGAAGGATGATGGAAGGAGATTCTAATGCTGAGAAATGGAGAGAAAGCCCTAGCATCATAGGCCAGTaGTGCCTCCTGGAAGCCTCC +
Preference number: 4 (lower is better)
Translates to: RRRMMEGDSNAEKWRESPSIIGQ*CLLEAS
Trigger: GGAGGCTTCCAGGAGGCACCACTGGCCTATGATGCT...AGGGCTTTCTCTCCATTTCTCAGCATTAGAATCTCCTTCCATCATCCTTCTCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp TATTTACAGCAATTCCATTATAGAGTGAATAGCAAAGGACCAGTCCTAGAAGAGCCCTCACCCTGGCAGTaGGGCTTGGGGGTGCTCCAC +
Preference number: 4 (lower is better)
Translates to: YLQQFHYRVNSKGPVLEEPSPWQ*GLGVLH
Trigger: GTGGAGCACCCCCAAGCCCCACTGCCAGGGTGAGGG...CTCTTCTAGGACTGGTCCTTTGCTATTCACTCTATAATGGAATTGCTGTAAATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
3UTR CAA 72 bp CCAGCTGGGGCAGAATGGAGACATCAATGTCTTCCTTaGGTTCCTCCTTGGCAAAAGTCTCAATGGTTCGGT +
Preference number: 4 (lower is better)
Translates to: PAGAEWRHQCLP*VPPWQKSQWFG
Trigger: ACCGAACCATTGAGACTTTTGCCAAGGAGGAACCAAAGGAAGACATTGATGTCTCCATTCTGCCCCAGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
CDS-3UTR TCA 90 bp TTCTTCCTGTCTGATGAGGAGGAGACTCTTCACATCTGCTCAGCCACCTACTCCAACTCTGTCGAAAAGTaGTCTCAATCCCAGCCTCTT +
Preference number: 4 (lower is better)
Translates to: FFLSDEEETLHICSATYSNSVEK*SQSQPL
Trigger: AAGAGGCTGGGATTGAGATCACTTTTCGACAGAGTT...GGAGTAGGTGGCTGAGCAGATGTGAAGAGTCTCCTCCTCATCAGACAGGAAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR TCA 90 bp CCCGGTCAGTCCATCTGTCCATGCCTTCATTTGATCAAATGTGCACCCACTATCAGAAAAGTCCCACGATaGTTCGAGCATCTTGACGCT +
Preference number: 4 (lower is better)
Translates to: PGQSICPCLHLIKCAPTIRKVPR*FEHLDA
Trigger: AGCGTCAAGATGCTCGAATCATCGTGGGACTTTTCT...GATAGTGGGTGCACATTTGATCAAATGAAGGCATGGACAGATGGACTGACCGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR TCA 90 bp CCCGGTCAGTCCATCTGTCCATGCCTTCATTTGATCAAATGTGCACCCACTATCCAGGCTGGAGAGAACTaGGACGGAGATAAAGAGTTT +
Preference number: 4 (lower is better)
Translates to: PGQSICPCLHLIKCAPTIQAGEN*DGDKEF
Trigger: AAACTCTTTATCTCCGTCTCAGTTCTCTCCAGCCTG...GATAGTGGGTGCACATTTGATCAAATGAAGGCATGGACAGATGGACTGACCGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR GCA 90 bp TATTTACAGCAATTCCATTATAGAGTGAATAGCAAAGGACCAGTCCTAGAAGAGCGTTGGCCAGGCACTTaGGCACCTTGGGCCCCACCA +
Preference number: 4 (lower is better)
Translates to: YLQQFHYRVNSKGPVLEERWPGT*APWAPP
Trigger: TGGTGGGGCCCAAGGTGCGCAAGTGCCTGGCCAACG...CTCTTCTAGGACTGGTCCTTTGCTATTCACTCTATAATGGAATTGCTGTAAATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR GCA 90 bp AGGATGATGGAAGGAGATTCTAATGCTGAGAAATGGAGAGAAAGCCCTGATAATCTGCCGCCCTGTAGCTaGTCGATAAGCGTCCATGCC +
Preference number: 4 (lower is better)
Translates to: RMMEGDSNAEKWRESPDNLPPCS*SISVHA
Trigger: GGCATGGACGCTTATCGAGCAGCTACAGGGCGGCAG...ATTATCAGGGCTTTCTCTCCATTTCTCAGCATTAGAATCTCCTTCCATCATCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR GCA 90 bp AGTTGCTGTAGTAACAACTATACAAGACAGCCTATGGGAGACAAACGAGATGCCTCATCTTCTTGGAGCTaGAGTGCTCCAGCTGGGGCA +
Preference number: 4 (lower is better)
Translates to: SCCSNNYTRQPMGDKRDASSSWS*SAPAGA
Trigger: TGCCCCAGCTGGAGCACTGCAGCTCCAAGAAGATGA...GGCATCTCGTTTGTCTCCCATAGGCTGTCTTGTATAGTTGTTACTACAGCAACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR GCA 90 bp CTCTGCCCCACTAATCCCTGCATGGAACAATCACACAGCTCTTTGCACCTCTCTTTTCATTGTGTCCTGTaGTTCAGACTGCCATTCACC +
Preference number: 4 (lower is better)
Translates to: LCPTNPCMEQSHSSLHLSFHCVL*FRLPFT
Trigger: GGTGAATGGCAGTCTGAAGCACAGGACACAATGAAA...AGAGAGGTGCAAAGAGCTGTGTGATTGTTCCATGCAGGGATTAGTGGGGCAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR CCA 90 bp ACACCCACAACCACTGTGCACTCACAGGTGCAGCATATGCAAACACAAGTGATAACAAGGCTGGTGAGCTaGAGCCATATGAGAGCACAA +
Preference number: 4 (lower is better)
Translates to: TPTTTVHSQVQHMQTQVITRLVS*SHMRAQ
Trigger: TTGTGCTCTCATATGGCTCCAGCTCACCAGCCTTGT...TATCACTTGTGTTTGCATATGCTGCACCTGTGAGTGCACAGTGGTTGTGGGTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGGTGAGTCCCCTGGAAGAAGCAACATTTAAGCCAGCTGGGGCAGAATaGAGACATCAATGTCTTCCT +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVVSPLEEATFKPAGAE*RHQCLP
Trigger: AGGAAGACATTGATGTCTCCATTCTGCCCCAGCTGG...CTTAAATGTTGCTTCTTCCAGGGGACTCACCACACACACACACACACACACACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp AGTCACACTGTTAACTGCTTTATTGAGATTCAGGGAGATCCTTCCCCCAAGAGACTGCAGTGCTCCAGCTaGGGCAGAATGGAGACATCA +
Preference number: 4 (lower is better)
Translates to: SHTVNCFIEIQGDPSPKRLQCSS*GRMETS
Trigger: TGATGTCTCCATTCTGCCCCAGCTGGAGCACTGCAG...TCTCTTGGGGGAAGGATCTCCCTGAATCTCAATAAAGCAGTTAACAGTGTGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
3UTR CAA 72 bp CAGAGGCTACTACCATGGACCAAGCAGATCCAGGCATaGGGATGCATAATTAGCCTAGTTCTTGTGTGCACT +
Preference number: 4 (lower is better)
Translates to: QRLLPWTKQIQA*GCIISLVLVCT
Trigger: AGTGCACACAAGAACTAGGCTAATTATGCATCCCAATGCCTGGATCTGCTTGGTCCATGGTAGTAGCCTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
3UTR CAA 72 bp AAGCCTCCAGTCTCCTCAGGGTGTCTTTTCAGCCGCTaGGTTAGTTTCTCCACAAATTCCTGTGATGTCATG +
Preference number: 4 (lower is better)
Translates to: KPPVSSGCLFSR*VSFSTNSCDVM
Trigger: CATGACATCACAGGAATTTGTGGAGAAACTAACCAAGCGGCTGAAAAGACACCCTGAGGAGACTGGAGGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
3UTR CAA 72 bp AGAATGGAGACATCAATGTCTTCCTTTGGTTCCTCCTaGGCAAAAGTCTCAATGGTTCGGTGCAAGGGGTCC +
Preference number: 4 (lower is better)
Translates to: RMETSMSSFGSS*AKVSMVRCKGS
Trigger: GGACCCCTTGCACCGAACCATTGAGACTTTTGCCAAGGAGGAACCAAAGGAAGACATTGATGTCTCCATTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
CDS-3UTR TCA 90 bp AGGAGAGGAGAGGATATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAACTCTGTCGAAAAGTaGTCTCAATCCCAGCCTCTT +
Preference number: 4 (lower is better)
Translates to: RRGEDMVCVCVCVCVCVCNSVEK*SQSQPL
Trigger: AAGAGGCTGGGATTGAGATCACTTTTCGACAGAGTT...ACACACACACACACACACACACACACACACACACACCATATCCTCTCCTCTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR TCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGGTGAGTCCCCTGGAAGAAGCAACATTTAAGAGGCACAGCTGGATCTaGGAAGAAACTCTGTCGAAA +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVVSPLEEATFKRHSWI*EETLSK
Trigger: TTTCGACAGAGTTTCTTCTCAGATCCAGCTGTGCCT...CTTAAATGTTGCTTCTTCCAGGGGACTCACCACACACACACACACACACACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR TCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGGTGAGTCCCCTGGAAGAAGCAACATTTAAGCAGGCTGGAGAGAACTaGGACGGAGATAAAGAGTTT +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVVSPLEEATFKQAGEN*DGDKEF
Trigger: AAACTCTTTATCTCCGTCTCAGTTCTCTCCAGCCTG...CTTAAATGTTGCTTCTTCCAGGGGACTCACCACACACACACACACACACACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR TCA 90 bp AGGAGAAGGATGATGGAAGGAGATTCTAATGCTGAGAAATGGAGAGAAAGCCCTTCTCCTCCTTCTTTGTaGAGACTGTGTGGACCCACC +
Preference number: 4 (lower is better)
Translates to: RRRMMEGDSNAEKWRESPSPPSL*RLCGPT
Trigger: GGTGGGTCCACACAGTCTTCACAAAGAAGGAGGAGA...AGGGCTTTCTCTCCATTTCTCAGCATTAGAATCTCCTTCCATCATCCTTCTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR TCA 90 bp CACATCCAGCTGCCTAGGAGAGGAGAGGATATGGTGTGTGTGTGTGTGTGTGTGATTGTTGTTGGTGGATaGTCCTGTTTTCATTGTGTC +
Preference number: 4 (lower is better)
Translates to: HIQLPRRGEDMVCVCVCVIVVGG*SCFHCV
Trigger: GACACAATGAAAACAGGATCATCCACCAACAACAAT...CACACACACACACACACACACCATATCCTCTCCTCTCCTAGGCAGCTGGATGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR GCA 90 bp ACACCCACAACCACTGTGCACTCACAGGTGCAGCATATGCAAACACAAGTGATAATGTCATGTTGGAAATaGTTCGGGTGTTGGCAGGGT +
Preference number: 4 (lower is better)
Translates to: TPTTTVHSQVQHMQTQVIMSCWK*FGCWQG
Trigger: ACCCTGCCAACACCCGAAGCATTTCCAACATGACAT...TATCACTTGTGTTTGCATATGCTGCACCTGTGAGTGCACAGTGGTTGTGGGTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR GCA 90 bp TCTTCCCAAGATGCTCAGAGTTCCTTAGAGAACGGTTTCCAAGTTCTGAGGCGCAAAGATCATCCTTGGTaGTGTCGTAGTAGCCGATCT +
Preference number: 4 (lower is better)
Translates to: SSQDAQSSLENGFQVLRRKDHPW*CRSSRS
Trigger: AGATCGGCTACTACGACAGCACCAAGGATGATCTTT...GCGCCTCAGAACTTGGAAACCGTTCTCTAAGGAACTCTGAGCATCTTGGGAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR GCA 90 bp CCCGGTCAGTCCATCTGTCCATGCCTTCATTTGATCAAATGTGCACCCACTATCTTTCATTGTGTCCTGTaGTTCAGACTGCCATTCACC +
Preference number: 4 (lower is better)
Translates to: PGQSICPCLHLIKCAPTIFHCVL*FRLPFT
Trigger: GGTGAATGGCAGTCTGAAGCACAGGACACAATGAAA...GATAGTGGGTGCACATTTGATCAAATGAAGGCATGGACAGATGGACTGACCGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp TACACAAGACTCAGTCTTCTTCCATCTGCCCTTGAATTATCACTGTTCTGGTCATTCGGACACAGCGACTaGGTGTGTCCATATCCGTCC +
Preference number: 4 (lower is better)
Translates to: YTRLSLLPSALELSLFWSFGHSD*VCPYPS
Trigger: GGACGGATATGGACACACCCAGTCGCTGTGTCCGAA...TGACCAGAACAGTGATAATTCAAGGGCAGATGGAAGAAGACTGAGTCTTGTGTA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR CCA 90 bp AGTCACACTGTTAACTGCTTTATTGAGATTCAGGGAGATCCTTCCCCCAAGAGATCGCACTTGCTGTCGTaGTGGATAAGCTTGAGCTCG +
Preference number: 4 (lower is better)
Translates to: SHTVNCFIEIQGDPSPKRSHLLS*WISLSS
Trigger: CGAGCTCAAGCTTATCCACCACGACAGCAAGTGCGA...TCTCTTGGGGGAAGGATCTCCCTGAATCTCAATAAAGCAGTTAACAGTGTGACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp AAAGAAGACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGGAACAATGCCCAGGCTaGAGAGAACTGAGACGGAGA +
Preference number: 4 (lower is better)
Translates to: KEDRTSARQTTVIPILRREQCPG*RELRRR
Trigger: TCTCCGTCTCAGTTCTCTCCAGCCTGGGCATTGTTC...CCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTCTTCTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp TCTTCCCAAGATGCTCAGAGTTCCTTAGAGAACGGTTTCCAAGTTCTGAGGCGCATGTATTCATCTTCTTaGAGCTGCAGTGCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: SSQDAQSSLENGFQVLRRMYSSS*SCSAPA
Trigger: AGCTGGAGCACTGCAGCTCCAAGAAGATGAATACAT...GCGCCTCAGAACTTGGAAACCGTTCTCTAAGGAACTCTGAGCATCTTGGGAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR CCA 90 bp CACATCCAGCTGCCTAGGAGAGGAGAGGATATGGTGTGTGTGTGTGTGTGTGTGCCTCATTGTTGTTGGTaGATGATCCTGTTTTCATTG +
Preference number: 4 (lower is better)
Translates to: HIQLPRRGEDMVCVCVCVPHCCW*MILFSL
Trigger: CAATGAAAACAGGATCATCCACCAACAACAATGAGG...CACACACACACACACACACACCATATCCTCTCCTCTCCTAGGCAGCTGGATGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR TCA 90 bp AACATATTTGCACAGAAACACATCCAGCTGCCTAGGAGAGGAGAGGATATGGTGAGAAAAGTCCCACGATaGTTCGAGCATCTTGACGCT +
Preference number: 4 (lower is better)
Translates to: NIFAQKHIQLPRRGEDMVRKVPR*FEHLDA
Trigger: AGCGTCAAGATGCTCGAATCATCGTGGGACTTTTCT...CACCATATCCTCTCCTCTCCTAGGCAGCTGGATGTGTTTCTGTGCAAATATGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR TCA 90 bp AACATATTTGCACAGAAACACATCCAGCTGCCTAGGAGAGGAGAGGATATGGTGCAGCATACCACCCGATaGGAAACCAGACATACTTCT +
Preference number: 4 (lower is better)
Translates to: NIFAQKHIQLPRRGEDMVQHTTR*ETRHTS
Trigger: AGAAGTATGTCTGGTTTCTCATCGGGTGGTATGCTG...CACCATATCCTCTCCTCTCCTAGGCAGCTGGATGTGTTTCTGTGCAAATATGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR TCA 90 bp ACCATGACATATGCACATGAGGAAGACAGCTTGGTGTGCTCAACACATCATGCAACGGGTCATAGGTTTTaGACCAGTTGTCAGCATACC +
Preference number: 4 (lower is better)
Translates to: TMTYAHEEDSLVCSTHHATGHRF*TSCQHT
Trigger: GGTATGCTGACAACTGGTTCAAAACCTATGACCCGT...TGCATGATGTGTTGAGCACACCAAGCTGTCTTCCTCATGTGCATATGTCATGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR GCA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGGTGAGTCCCCTGGAAGAAGCAACATTTAAGAAAGATCATCCTTGGTaGTGTCGTAGTAGCCGATCT +
Preference number: 4 (lower is better)
Translates to: CVCVCVCVVSPLEEATFKKDHPW*CRSSRS
Trigger: AGATCGGCTACTACGACAGCACCAAGGATGATCTTT...CTTAAATGTTGCTTCTTCCAGGGGACTCACCACACACACACACACACACACACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR GCA 90 bp AGGATGATGGAAGGAGATTCTAATGCTGAGAAATGGAGAGAAAGCCCTGATAATGAGTCAGGATATCCATaGCCACCAGCAGGCCTACAG +
Preference number: 4 (lower is better)
Translates to: RMMEGDSNAEKWRESPDNESGYP*PPAGLQ
Trigger: CTGTAGGCCTGCTGGTGGGCATGGATATCCTGACTC...ATTATCAGGGCTTTCTCTCCATTTCTCAGCATTAGAATCTCCTTCCATCATCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp TATTTACAGCAATTCCATTATAGAGTGAATAGCAAAGGACCAGTCCTAGAAGAGGAGCTGCCCACCAGATaGAAGTCGGGGTCACATCGG +
Preference number: 4 (lower is better)
Translates to: YLQQFHYRVNSKGPVLEEELPTR*KSGSHR
Trigger: CCGATGTGACCCCGACTTCCATCTGGTGGGCAGCTC...CTCTTCTAGGACTGGTCCTTTGCTATTCACTCTATAATGGAATTGCTGTAAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR CCA 90 bp CCCGGTCAGTCCATCTGTCCATGCCTTCATTTGATCAAATGTGCACCCACTATCTCCACTTGTCTGTTTTaGACCAGGAAAGATCATCCT +
Preference number: 4 (lower is better)
Translates to: PGQSICPCLHLIKCAPTISTCLF*TRKDHP
Trigger: AGGATGATCTTTCCTGGTCCAAAACAGACAAGTGGA...GATAGTGGGTGCACATTTGATCAAATGAAGGCATGGACAGATGGACTGACCGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp GACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGCTGAGATCAGATTGTTCAGGTTaGGCTGGGAGTTCTGGATAT +
Preference number: 4 (lower is better)
Translates to: DRTSARQTTVIPILRRLRSDCSG*AGSSGY
Trigger: ATATCCAGAACTCCCAGCCCAACCTGAACAATCTGA...TCTCAGCCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp AAAGAAGACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGATGCCCACGGCCCTGTaGTCATTGATCTTTTCAGTG +
Preference number: 4 (lower is better)
Translates to: KEDRTSARQTTVIPILRRMPTAL*SLIFSV
Trigger: CACTGAAAAGATCAATGACCACAGGGCCGTGGGCAT...CCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTCTTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
3UTR CAA 72 bp CTTCCTCATTGTTGTTGGTGGATGATCCTGTTTTCATaGTGTCCTGTGCTTCAGACTGCCATTCACCTCGAG +
Preference number: 4 (lower is better)
Translates to: LPHCCWWMILFS*CPVLQTAIHLE
Trigger: CTCGAGGTGAATGGCAGTCTGAAGCACAGGACACAATGAAAACAGGATCATCCACCAACAACAATGAGGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
CDS-3UTR TCA 90 bp AAAGAAGACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGACGGGTCATAGGTTTTaGACCAGTTGTCAGCATACC +
Preference number: 4 (lower is better)
Translates to: KEDRTSARQTTVIPILRRTGHRF*TSCQHT
Trigger: GGTATGCTGACAACTGGTTCAAAACCTATGACCCGT...CCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTCTTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR TCA 90 bp AGGAGAGGAGAGGATATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTGTTGTTGGTGGATaGTCCTGTTTTCATTGTGTC +
Preference number: 4 (lower is better)
Translates to: RRGEDMVCVCVCVCVCVCIVVGG*SCFHCV
Trigger: GACACAATGAAAACAGGATCATCCACCAACAACAAT...ACACACACACACACACACACACACACACACACACACCATATCCTCTCCTCTCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR GCA 90 bp AAAGAAGACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGATGTCATGTTGGAAATaGTTCGGGTGTTGGCAGGGT +
Preference number: 4 (lower is better)
Translates to: KEDRTSARQTTVIPILRRMSCWK*FGCWQG
Trigger: ACCCTGCCAACACCCGAAGCATTTCCAACATGACAT...CCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTCTTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp GTCTTCTTCCATCTGCCCTTGAATTATCACTGTTCTGGTCATTCTGCCCCAATTGGGTCAAATAAGACTTaGAGCAGATTCGGACACAGC +
Preference number: 4 (lower is better)
Translates to: VFFHLPLNYHCSGHSAPIGSNKT*SRFGHS
Trigger: GCTGTGTCCGAATCTGCTCCAAGTCTTATTTGACCC...AATTGGGGCAGAATGACCAGAACAGTGATAATTCAAGGGCAGATGGAAGAAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR CCA 90 bp AGTTGCTGTAGTAACAACTATACAAGACAGCCTATGGGAGACAAACGAGATGCCCCTGTGATGTCATGTTaGAAATGCTTCGGGTGTTGG +
Preference number: 4 (lower is better)
Translates to: SCCSNNYTRQPMGDKRDAPVMSC*KCFGCW
Trigger: CCAACACCCGAAGCATTTCCAACATGACATCACAGG...GGCATCTCGTTTGTCTCCCATAGGCTGTCTTGTATAGTTGTTACTACAGCAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp AAAGAAGACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGCCTGTGATGTCATGTTaGAAATGCTTCGGGTGTTGG +
Preference number: 4 (lower is better)
Translates to: KEDRTSARQTTVIPILRRPVMSC*KCFGCW
Trigger: CCAACACCCGAAGCATTTCCAACATGACATCACAGG...CCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTCTTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp AAAGAAGACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGAGGAAAGATCATCCTTaGTGCTGTCGTAGTAGCCGA +
Preference number: 4 (lower is better)
Translates to: KEDRTSARQTTVIPILRRRKDHP*CCRSSR
Trigger: TCGGCTACTACGACAGCACCAAGGATGATCTTTCCT...CCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTCTTCTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp GTTAACTGCTTTATTGAGATTCAGGGAGATCCTTCCCCCAAGAGACACCACAGTTCAGATTGTTCAGGTTaGGCTGGGAGTTCTGGATAT +
Preference number: 4 (lower is better)
Translates to: VNCFIEIQGDPSPKRHHSSDCSG*AGSSGY
Trigger: ATATCCAGAACTCCCAGCCCAACCTGAACAATCTGA...ACTGTGGTGTCTCTTGGGGGAAGGATCTCCCTGAATCTCAATAAAGCAGTTAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp ACCATGACATATGCACATGAGGAAGACAGCTTGGTGTGCTCAACACATCATGCACCTTTGGTTCCTCCTTaGCAAAAGTCTCAATGGTTC +
Preference number: 4 (lower is better)
Translates to: TMTYAHEEDSLVCSTHHAPLVPP*QKSQWF
Trigger: GAACCATTGAGACTTTTGCCAAGGAGGAACCAAAGG...TGCATGATGTGTTGAGCACACCAAGCTGTCTTCCTCATGTGCATATGTCATGGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
3UTR CAA 72 bp TTGGTTAGTTTCTCCACAAATTCCTGTGATGTCATGTaGGAAATGCTTCGGGTGTTGGCAGGGTTCAGCATG +
Preference number: 4 (lower is better)
Translates to: LVSFSTNSCDVM*EMLRVLAGFSM
Trigger: CATGCTGAACCCTGCCAACACCCGAAGCATTTCCAACATGACATCACAGGAATTTGTGGAGAAACTAACCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
CDS-3UTR TCA 90 bp GACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGCTGAGAATGATTCGAGCATCTTaGCGCTTCAGGTTTTTAACA +
Preference number: 4 (lower is better)
Translates to: DRTSARQTTVIPILRRLRMIRAS*RFRFLT
Trigger: TGTTAAAAACCTGAAGCGTCAAGATGCTCGAATCAT...TCTCAGCCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp TATTTACAGCAATTCCATTATAGAGTGAATAGCAAAGGACCAGTCCTAGAAGAGTTCGGACACAGCGACTaGGTGTGTCCATATCCGTCC +
Preference number: 4 (lower is better)
Translates to: YLQQFHYRVNSKGPVLEEFGHSD*VCPYPS
Trigger: GGACGGATATGGACACACCCAGTCGCTGTGTCCGAA...CTCTTCTAGGACTGGTCCTTTGCTATTCACTCTATAATGGAATTGCTGTAAATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR CCA 90 bp TTCCAGGAGAGAAGAGTATATATATACAAGAGTTTGGGTGCCCAGAAAAGGGAGGGGTCAAATAAGACTTaGAGCAGATTCGGACACAGC +
Preference number: 4 (lower is better)
Translates to: FQERRVYIYKSLGAQKREGSNKT*SRFGHS
Trigger: GCTGTGTCCGAATCTGCTCCAAGTCTTATTTGACCC...CTCCCTTTTCTGGGCACCCAAACTCTTGTATATATATACTCTTCTCTCCTGGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR CCA 90 bp GTTAACTGCTTTATTGAGATTCAGGGAGATCCTTCCCCCAAGAGACACCACAGTTCCACTTGTCTGTTTTaGACCAGGAAAGATCATCCT +
Preference number: 4 (lower is better)
Translates to: VNCFIEIQGDPSPKRHHSSTCLF*TRKDHP
Trigger: AGGATGATCTTTCCTGGTCCAAAACAGACAAGTGGA...ACTGTGGTGTCTCTTGGGGGAAGGATCTCCCTGAATCTCAATAAAGCAGTTAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp AAAGAAGACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGCCTTTGGTTCCTCCTTaGCAAAAGTCTCAATGGTTC +
Preference number: 4 (lower is better)
Translates to: KEDRTSARQTTVIPILRRPLVPP*QKSQWF
Trigger: GAACCATTGAGACTTTTGCCAAGGAGGAACCAAAGG...CCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTCTTCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp AGTCACACTGTTAACTGCTTTATTGAGATTCAGGGAGATCCTTCCCCCAAGAGAATGTATTCATCTTCTTaGAGCTGCAGTGCTCCAGCT +
Preference number: 4 (lower is better)
Translates to: SHTVNCFIEIQGDPSPKRMYSSS*SCSAPA
Trigger: AGCTGGAGCACTGCAGCTCCAAGAAGATGAATACAT...TCTCTTGGGGGAAGGATCTCCCTGAATCTCAATAAAGCAGTTAACAGTGTGACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR TCA 90 bp AGAATGACATGTATTTCTAAGAGGGGGATTGGAGCTTGTTCTCCACCCTCTTCCATGATTCGAGCATCTTaGCGCTTCAGGTTTTTAACA +
Preference number: 4 (lower is better)
Translates to: RMTCISKRGIGACSPPSSMIRAS*RFRFLT
Trigger: TGTTAAAAACCTGAAGCGTCAAGATGCTCGAATCAT...GGAAGAGGGTGGAGAACAAGCTCCAATCCCCCTCTTAGAAATACATGTCATTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR TCA 90 bp AGAATGACATGTATTTCTAAGAGGGGGATTGGAGCTTGTTCTCCACCCTCTTCCGATAAAGAGTTTCTGTaGCAGGAAACGGAATGTCTT +
Preference number: 4 (lower is better)
Translates to: RMTCISKRGIGACSPPSSDKEFL*QETECL
Trigger: AAGACATTCCGTTTCCTGTCACAGAAACTCTTTATC...GGAAGAGGGTGGAGAACAAGCTCCAATCCCCCTCTTAGAAATACATGTCATTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp AGAATGACATGTATTTCTAAGAGGGGGATTGGAGCTTGTTCTCCACCCTCTTCCGTCTTTTCAGCCGCTTaGTTAGTTTCTCCACAAATT +
Preference number: 4 (lower is better)
Translates to: RMTCISKRGIGACSPPSSVFSAA*LVSPQI
Trigger: AATTTGTGGAGAAACTAACCAAGCGGCTGAAAAGAC...GGAAGAGGGTGGAGAACAAGCTCCAATCCCCCTCTTAGAAATACATGTCATTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
3UTR CAA 72 bp AACACAAGTGATAGCAGCATTCAGAAAAGAACATATTaGCACAGAAACACATCCAGCTGCCTAGGAGAGGAG +
Preference number: 4 (lower is better)
Translates to: NTSDSSIQKRTY*HRNTSSCLGEE
Trigger: CTCCTCTCCTAGGCAGCTGGATGTGTTTCTGTGCAAATATGTTCTTTTCTGAATGCTGCTATCACTTGTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
ENSMUST00000173823.8
CDS-3UTR CCA 90 bp AAAGAAGACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGGTCTTTTCAGCCGCTTaGTTAGTTTCTCCACAAATT +
Preference number: 4 (lower is better)
Translates to: KEDRTSARQTTVIPILRRVFSAA*LVSPQI
Trigger: AATTTGTGGAGAAACTAACCAAGCGGCTGAAAAGAC...CCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTCTTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp AGTCACACTGTTAACTGCTTTATTGAGATTCAGGGAGATCCTTCCCCCAAGAGACCTCATTGTTGTTGGTaGATGATCCTGTTTTCATTG +
Preference number: 4 (lower is better)
Translates to: SHTVNCFIEIQGDPSPKRPHCCW*MILFSL
Trigger: CAATGAAAACAGGATCATCCACCAACAACAATGAGG...TCTCTTGGGGGAAGGATCTCCCTGAATCTCAATAAAGCAGTTAACAGTGTGACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CCA 90 bp AAGTATACACAAGACTCAGTCTTCTTCCATCTGCCCTTGAATTATCACTGTTCTTCTGAGGCAGGTGGGTaGTGTAAAGATAGGTTTCAC +
Preference number: 4 (lower is better)
Translates to: KYTQDSVFFHLPLNYHCSSEAGG*CKDRFH
Trigger: GTGAAACCTATCTTTACACCACCCACCTGCCTCAGA...AGAACAGTGATAATTCAAGGGCAGATGGAAGAAGACTGAGTCTTGTGTATACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
3UTR CAA 72 bp AAGTATACACAAGACTCAGTCTTCTTCCATCTGCCCTaGAATTATCACTGTTCTGGTCATTCTGCCCCAATT +
Preference number: 4 (lower is better)
Translates to: KYTQDSVFFHLP*NYHCSGHSAPI
Trigger: AATTGGGGCAGAATGACCAGAACAGTGATAATTCAAGGGCAGATGGAAGAAGACTGAGTCTTGTGTATACTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
3UTR CAA 72 bp TCATTCCAGGAGAGAAGAGTATATATATACAAGAGTTaGGGTGCCCAGAAAAGGGAGACGTTTGCAGAAAAG +
Preference number: 4 (lower is better)
Translates to: SFQERRVYIYKS*GAQKRETFAEK
Trigger: CTTTTCTGCAAACGTCTCCCTTTTCTGGGCACCCAAACTCTTGTATATATATACTCTTCTCTCCTGGAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS CCA 90 bp GGGTGCCACAGCGACTGGGTGTGTCCATATCCGTCCAGGAGCCGTTaGCCAGGCACTTGCGCACCTTGGGCCCCACCACCTCGCGTTCGC +
Preference number: 5 (lower is better)
Translates to: GCHSDWVCPYPSRSR*PGTCAPWAPPPRVR
Trigger: GCGAACGCGAGGTGGTGGGGCCCAAGGTGCGCAAGTGCCTGGCCAACGGCTCCTGGACGGATATGGACACACCCAGTCGCTGTGGCACCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
CDS GCA 90 bp GACTGGGTGTGTCCATATCCGTCCAGGAGCCGTTGGCCAGGCACTTaGGCACCTTGGGCCCCACCACCTCGCGTTCGCCCCGGCACACAT +
Preference number: 5 (lower is better)
Translates to: DWVCPYPSRSRWPGT*APWAPPPRVRPGTH
Trigger: ATGTGTGCCGGGGCGAACGCGAGGTGGTGGGGCCCAAGGTGCGCAAGTGCCTGGCCAACGGCTCCTGGACGGATATGGACACACCCAGTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025338.16
ENSMUST00000172789.2
ENSMUST00000173823.8
ENSMUST00000174456.8
CDS CCA 90 bp TTCGGACACAGCGACTGGGTGTGTCCATATCCGTCCAGGAGCCGTTaGCCAGGCACTTGCGCACCTTGGGCCCCACCACCTCGCGTTCGC +
Preference number: 5 (lower is better)
Translates to: FGHSDWVCPYPSRSR*PGTCAPWAPPPRVR
Trigger: GCGAACGCGAGGTGGTGGGGCCCAAGGTGCGCAAGTGCCTGGCCAACGGCTCCTGGACGGATATGGACACACCCAGTCGCTGTGTCCGAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS TCA 90 bp GTTCGATTCACCTGGCAGTGGGGCTTGGGGGTGCTCCACTGGCCCTaGCTACAGATGCTCCGGGAGCTGCCCACCAGATGGAAGTCGGGG +
Preference number: 5 (lower is better)
Translates to: VRFTWQWGLGVLHWP*LQMLRELPTRWKSG
Trigger: CCCCGACTTCCATCTGGTGGGCAGCTCCCGGAGCATCTGTAGTCAGGGCCAGTGGAGCACCCCCAAGCCCCACTGCCAGGTGAATCGAAC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS GCA 90 bp GCTTGGGGGTGCTCCACTGGCCCTGACTACAGATGCTCCGGGAGCTaGCCACCAGATGGAAGTCGGGGTCACATCGGAAATCCACCCGGG +
Preference number: 5 (lower is better)
Translates to: AWGCSTGPDYRCSGS*PPDGSRGHIGNPPG
Trigger: CCCGGGTGGATTTCCGATGTGACCCCGACTTCCATCTGGTGGGCAGCTCCCGGAGCATCTGTAGTCAGGGCCAGTGGAGCACCCCCAAGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS CCA 90 bp TCATGCGGAGCGGAGACTGCGATGAGGGAAGGGTGCCACAGCGACTaGGTGTGTCCATATCCGTCCAGGAGCCGTTGGCCAGGCACTTGC +
Preference number: 5 (lower is better)
Translates to: SCGAETAMREGCHSD*VCPYPSRSRWPGTC
Trigger: GCAAGTGCCTGGCCAACGGCTCCTGGACGGATATGGACACACCCAGTCGCTGTGGCACCCTTCCCTCATCGCAGTCTCCGCTCCGCATGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
CDS GCA 90 bp TCCCACACCTGTTCATGCGGAGCGGAGACTGCGATGAGGGAAGGGTaGCACAGCGACTGGGTGTGTCCATATCCGTCCAGGAGCCGTTGG +
Preference number: 5 (lower is better)
Translates to: SHTCSCGAETAMREG*HSDWVCPYPSRSRW
Trigger: CCAACGGCTCCTGGACGGATATGGACACACCCAGTCGCTGTGGCACCCTTCCCTCATCGCAGTCTCCGCTCCGCATGAACAGGTGTGGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
CDS CCA 90 bp TGTCCATATCCGTCCAGGAGCCGTTGGCCAGGCACTTGCGCACCTTaGGCCCCACCACCTCGCGTTCGCCCCGGCACACATATTCAATCT +
Preference number: 5 (lower is better)
Translates to: CPYPSRSRWPGTCAP*APPPRVRPGTHIQS
Trigger: AGATTGAATATGTGTGCCGGGGCGAACGCGAGGTGGTGGGGCCCAAGGTGCGCAAGTGCCTGGCCAACGGCTCCTGGACGGATATGGACA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025338.16
ENSMUST00000172789.2
ENSMUST00000173823.8
ENSMUST00000174456.8
CDS-3UTR CAA 90 bp GTGAAAGGGATGCTGCCTCCCGCCCGGTCAGTCCATCTGTCCATGCCTTCATTTTCCGTCCAGGAGCCGTaGGCCAGGCACTTGCGCACC +
Preference number: 5 (lower is better)
Translates to: VKGMLPPARSVHLSMPSFSVQEP*ARHLRT
Trigger: GGTGCGCAAGTGCCTGGCCAACGGCTCCTGGACGGA...AAATGAAGGCATGGACAGATGGACTGACCGGGCGGGAGGCAGCATCCCTTTCAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000173823.8
CDS-3UTR CAA 90 bp AGGAGAGGAGAGGATATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCCGTCCAGGAGCCGTaGGCCAGGCACTTGCGCACC +
Preference number: 5 (lower is better)
Translates to: RRGEDMVCVCVCVCVCVCSVQEP*ARHLRT
Trigger: GGTGCGCAAGTGCCTGGCCAACGGCTCCTGGACGGA...ACACACACACACACACACACACACACACACACACACCATATCCTCTCCTCTCCT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000173823.8
CDS CCA 90 bp AGGTCTGGTCGGCTGGGGGAGACCCTCCGATCCACTTGTCTGTTTTaGACCAGGAAAGATCATCCTTGGTGCTGTCGTAGTAGCCGATCT +
Preference number: 5 (lower is better)
Translates to: RSGRLGETLRSTCLF*TRKDHPWCCRSSRS
Trigger: AGATCGGCTACTACGACAGCACCAAGGATGATCTTTCCTGGTCCAAAACAGACAAGTGGATCGGAGGGTCTCCCCCAGCCGACCAGACCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp AGATCCTTCCCCCAAGAGACACCACAGTGTGAAAGGGATGCTGCCTCCCGCCCGTCCTGTGATGTCATGTaGGAAATGCTTCGGGTGTTG +
Preference number: 5 (lower is better)
Translates to: RSFPQETPQCERDAASRPSCDVM*EMLRVL
Trigger: CAACACCCGAAGCATTTCCAACATGACATCACAGGA...CGGGCGGGAGGCAGCATCCCTTTCACACTGTGGTGTCTCTTGGGGGAAGGATCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp GTGAAAGGGATGCTGCCTCCCGCCCGGTCAGTCCATCTGTCCATGCCTTCATTTGACCCTCCGATCCACTaGTCTGTTTTGGACCAGGAA +
Preference number: 5 (lower is better)
Translates to: VKGMLPPARSVHLSMPSFDPPIH*SVLDQE
Trigger: TTCCTGGTCCAAAACAGACAAGTGGATCGGAGGGTC...AAATGAAGGCATGGACAGATGGACTGACCGGGCGGGAGGCAGCATCCCTTTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp CACATCCAGCTGCCTAGGAGAGGAGAGGATATGGTGTGTGTGTGTGTGTGTGTGCCCACAGCAGTCAGATaGTTCAGGTTGGGCTGGGAG +
Preference number: 5 (lower is better)
Translates to: HIQLPRRGEDMVCVCVCVPTAVR*FRLGWE
Trigger: CTCCCAGCCCAACCTGAACAATCTGACTGCTGTGGG...CACACACACACACACACACACCATATCCTCTCCTCTCCTAGGCAGCTGGATGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp AGGAGAAGGATGATGGAAGGAGATTCTAATGCTGAGAAATGGAGAGAAAGCCCTAGGCACTTGCGCACCTaGGGCCCCACCACCTCGCGT +
Preference number: 5 (lower is better)
Translates to: RRRMMEGDSNAEKWRESPRHLRT*GPTTSR
Trigger: ACGCGAGGTGGTGGGGCCCAAGGTGCGCAAGTGCCT...AGGGCTTTCTCTCCATTTCTCAGCATTAGAATCTCCTTCCATCATCCTTCTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000173823.8
CDS-3UTR CAA 90 bp CACATCATGCACGCCTACCCAAGCACACCACTGCACACACCCACAACCACTGTGCATGGCCCGGTAGATTaGGTCTGTAATGGTCTGGTT +
Preference number: 5 (lower is better)
Translates to: HIMHAYPSTPLHTPTTTVHGPVD*VCNGLV
Trigger: AACCAGACCATTACAGACCAAATCTACCGGGCCATG...CACAGTGGTTGTGGGTGTGTGCAGTGGTGTGCTTGGGTAGGCGTGCATGATGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp AGATCCTTCCCCCAAGAGACACCACAGTGTGAAAGGGATGCTGCCTCCCGCCCGCATCAATGTCTTCCTTaGGTTCCTCCTTGGCAAAAG +
Preference number: 5 (lower is better)
Translates to: RSFPQETPQCERDAASRPHQCLP*VPPWQK
Trigger: CTTTTGCCAAGGAGGAACCAAAGGAAGACATTGATG...CGGGCGGGAGGCAGCATCCCTTTCACACTGTGGTGTCTCTTGGGGGAAGGATCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp TGTGAAGACTGTGTGGACCCACCAGATCTTGGTGAACATAGAGCCATAGCCCAGTCCACAGGCAGGAAATaGATGGCCTTCACCTGGTCG +
Preference number: 5 (lower is better)
Translates to: CEDCVDPPDLGEHRAIAQSTGRK*MAFTWS
Trigger: CGACCAGGTGAAGGCCATCAATTTCCTGCCTGTGGA...CTGGGCTATGGCTCTATGTTCACCAAGATCTGGTGGGTCCACACAGTCTTCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
CDS-3UTR CAA 90 bp TCCAGGAGAGAAGAGTATATATATACAAGAGTTTGGGTGCCCAGAAAAGGGAGATCCGTCCAGGAGCCGTaGGCCAGGCACTTGCGCACC +
Preference number: 5 (lower is better)
Translates to: SRREEYIYTRVWVPRKGRSVQEP*ARHLRT
Trigger: GGTGCGCAAGTGCCTGGCCAACGGCTCCTGGACGGA...TCTCCCTTTTCTGGGCACCCAAACTCTTGTATATATATACTCTTCTCTCCTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR CAA 90 bp CACACACCCACAACCACTGTGCACTCACAGGTGCAGCATATGCAAACACAAGTGCCTCCTCCAGAGGTCTaGTTCAAGGCCAAAGCCAAG +
Preference number: 5 (lower is better)
Translates to: HTPTTTVHSQVQHMQTQVPPPEV*FKAKAK
Trigger: CTTGGCTTTGGCCTTGAACAAGACCTCTGGAGGAGG...CACTTGTGTTTGCATATGCTGCACCTGTGAGTGCACAGTGGTTGTGGGTGTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS GCA 90 bp CTCCGATCCACTTGTCTGTTTTGGACCAGGAAAGATCATCCTTGGTaGTGTCGTAGTAGCCGATCTTCTTGTAGCTGCCGCCCTGTAGCT +
Preference number: 5 (lower is better)
Translates to: LRSTCLFWTRKDHPW*CRSSRSSCSCRPVA
Trigger: AGCTACAGGGCGGCAGCTACAAGAAGATCGGCTACTACGACAGCACCAAGGATGATCTTTCCTGGTCCAAAACAGACAAGTGGATCGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS CCA 90 bp ACCCTCCGATCCACTTGTCTGTTTTGGACCAGGAAAGATCATCCTTaGTGCTGTCGTAGTAGCCGATCTTCTTGTAGCTGCCGCCCTGTA +
Preference number: 5 (lower is better)
Translates to: TLRSTCLFWTRKDHP*CCRSSRSSCSCRPV
Trigger: TACAGGGCGGCAGCTACAAGAAGATCGGCTACTACGACAGCACCAAGGATGATCTTTCCTGGTCCAAAACAGACAAGTGGATCGGAGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS CCA 90 bp AAGAGTTTCTGTGACAGGAAACGGAATGTCTTGATGACCAAGGTCTaGTCGGCTGGGGGAGACCCTCCGATCCACTTGTCTGTTTTGGAC +
Preference number: 5 (lower is better)
Translates to: KSFCDRKRNVLMTKV*SAGGDPPIHLSVLD
Trigger: GTCCAAAACAGACAAGTGGATCGGAGGGTCTCCCCCAGCCGACCAGACCTTGGTCATCAAGACATTCCGTTTCCTGTCACAGAAACTCTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp TGGACCAAGCAGATCCAGGCATTGGGATGCATAATTAGCCTAGTTCTTGTGTGCTCCACAGGCAGGAAATaGATGGCCTTCACCTGGTCG +
Preference number: 5 (lower is better)
Translates to: WTKQIQALGCIISLVLVCSTGRK*MAFTWS
Trigger: CGACCAGGTGAAGGCCATCAATTTCCTGCCTGTGGA...GCACACAAGAACTAGGCTAATTATGCATCCCAATGCCTGGATCTGCTTGGTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR CAA 90 bp GTTAACTGCTTTATTGAGATTCAGGGAGATCCTTCCCCCAAGAGACACCACAGTGAAACCGCTGTCGGTTaGACAAGGCTGGTGAGCTGG +
Preference number: 5 (lower is better)
Translates to: VNCFIEIQGDPSPKRHHSETAVG*TRLVSW
Trigger: CCAGCTCACCAGCCTTGTCAAACCGACAGCGGTTTC...ACTGTGGTGTCTCTTGGGGGAAGGATCTCCCTGAATCTCAATAAAGCAGTTAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp CCAATACTCAGAAGGCTGAGACAGGAAGCCTGCCCTGACACGAGTCAGGGCAACTGTCTTTTCAGCCGCTaGGTTAGTTTCTCCACAAAT +
Preference number: 5 (lower is better)
Translates to: PILRRLRQEACPDTSQGNCLFSR*VSFSTN
Trigger: ATTTGTGGAGAAACTAACCAAGCGGCTGAAAAGACA...GTTGCCCTGACTCGTGTCAGGGCAGGCTTCCTGTCTCAGCCTTCTGAGTATTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp CACATCATGCACGCCTACCCAAGCACACCACTGCACACACCCACAACCACTGTGTCTTCCTCATTGTTGTaGGTGGATGATCCTGTTTTC +
Preference number: 5 (lower is better)
Translates to: HIMHAYPSTPLHTPTTTVSSSLL*VDDPVF
Trigger: GAAAACAGGATCATCCACCAACAACAATGAGGAAGA...CACAGTGGTTGTGGGTGTGTGCAGTGGTGTGCTTGGGTAGGCGTGCATGATGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp ACAGTCTTAAGAGCTCAAAATAAGGACTTAGTCAAAATGAAGAACCCTGAAGCTTCCGTCCAGGAGCCGTaGGCCAGGCACTTGCGCACC +
Preference number: 5 (lower is better)
Translates to: TVLRAQNKDLVKMKNPEASVQEP*ARHLRT
Trigger: GGTGCGCAAGTGCCTGGCCAACGGCTCCTGGACGGA...AGCTTCAGGGTTCTTCATTTTGACTAAGTCCTTATTTTGAGCTCTTAAGACTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR CAA 90 bp AAAGAAGACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGGAAACCGCTGTCGGTTaGACAAGGCTGGTGAGCTGG +
Preference number: 5 (lower is better)
Translates to: KEDRTSARQTTVIPILRRETAVG*TRLVSW
Trigger: CCAGCTCACCAGCCTTGTCAAACCGACAGCGGTTTC...CCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTCTTCTTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGGTGAGTCCCCTGGAAGAAGCAACATTTAAGGACCCTCCGATCCACTaGTCTGTTTTGGACCAGGAA +
Preference number: 5 (lower is better)
Translates to: CVCVCVCVVSPLEEATFKDPPIH*SVLDQE
Trigger: TTCCTGGTCCAAAACAGACAAGTGGATCGGAGGGTC...CTTAAATGTTGCTTCTTCCAGGGGACTCACCACACACACACACACACACACACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp ACTAATCGAGCCCTTCATCTCATCCCGCTCTGCCCCACTAATCCCTGCATGGAACATCAATGTCTTCCTTaGGTTCCTCCTTGGCAAAAG +
Preference number: 5 (lower is better)
Translates to: TNRALHLIPLCPTNPCMEHQCLP*VPPWQK
Trigger: CTTTTGCCAAGGAGGAACCAAAGGAAGACATTGATG...TTCCATGCAGGGATTAGTGGGGCAGAGCGGGATGAGATGAAGGGCTCGATTAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR CAA 90 bp TCTTCCCAAGATGCTCAGAGTTCCTTAGAGAACGGTTTCCAAGTTCTGAGGCGCCATGTATTCATCTTCTaGGAGCTGCAGTGCTCCAGC +
Preference number: 5 (lower is better)
Translates to: SSQDAQSSLENGFQVLRRHVFIF*ELQCSS
Trigger: GCTGGAGCACTGCAGCTCCAAGAAGATGAATACATG...GCGCCTCAGAACTTGGAAACCGTTCTCTAAGGAACTCTGAGCATCTTGGGAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR CAA 90 bp GTCTTCTTCCATCTGCCCTTGAATTATCACTGTTCTGGTCATTCTGCCCCAATTTCCACAGGCAGGAAATaGATGGCCTTCACCTGGTCG +
Preference number: 5 (lower is better)
Translates to: VFFHLPLNYHCSGHSAPISTGRK*MAFTWS
Trigger: CGACCAGGTGAAGGCCATCAATTTCCTGCCTGTGGA...AATTGGGGCAGAATGACCAGAACAGTGATAATTCAAGGGCAGATGGAAGAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR CAA 90 bp AGGAGAAGGATGATGGAAGGAGATTCTAATGCTGAGAAATGGAGAGAAAGCCCTCCTCCTCCAGAGGTCTaGTTCAAGGCCAAAGCCAAG +
Preference number: 5 (lower is better)
Translates to: RRRMMEGDSNAEKWRESPPPPEV*FKAKAK
Trigger: CTTGGCTTTGGCCTTGAACAAGACCTCTGGAGGAGG...AGGGCTTTCTCTCCATTTCTCAGCATTAGAATCTCCTTCCATCATCCTTCTCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGGTGAGTCCCCTGGAAGAAGCAACATTTAAGCATGGCCCGGTAGATTaGGTCTGTAATGGTCTGGTT +
Preference number: 5 (lower is better)
Translates to: CVCVCVCVVSPLEEATFKHGPVD*VCNGLV
Trigger: AACCAGACCATTACAGACCAAATCTACCGGGCCATG...CTTAAATGTTGCTTCTTCCAGGGGACTCACCACACACACACACACACACACACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp CTCTGCCCCACTAATCCCTGCATGGAACAATCACACAGCTCTTTGCACCTCTCTATCCACTTGTCTGTTTaGGACCAGGAAAGATCATCC +
Preference number: 5 (lower is better)
Translates to: LCPTNPCMEQSHSSLHLSIHLSV*DQERSS
Trigger: GGATGATCTTTCCTGGTCCAAAACAGACAAGTGGAT...AGAGAGGTGCAAAGAGCTGTGTGATTGTTCCATGCAGGGATTAGTGGGGCAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR CAA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGGTGAGTCCCCTGGAAGAAGCAACATTTAAGCATGTATTCATCTTCTaGGAGCTGCAGTGCTCCAGC +
Preference number: 5 (lower is better)
Translates to: CVCVCVCVVSPLEEATFKHVFIF*ELQCSS
Trigger: GCTGGAGCACTGCAGCTCCAAGAAGATGAATACATG...CTTAAATGTTGCTTCTTCCAGGGGACTCACCACACACACACACACACACACACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp GACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGCTGAGAACGGCCCTGTGGTCATaGATCTTTTCAGTGGACACA +
Preference number: 5 (lower is better)
Translates to: DRTSARQTTVIPILRRLRTALWS*IFSVDT
Trigger: TGTGTCCACTGAAAAGATCAATGACCACAGGGCCGT...TCTCAGCCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp TTCCAGGAGAGAAGAGTATATATATACAAGAGTTTGGGTGCCCAGAAAAGGGAGTCCACAGGCAGGAAATaGATGGCCTTCACCTGGTCG +
Preference number: 5 (lower is better)
Translates to: FQERRVYIYKSLGAQKRESTGRK*MAFTWS
Trigger: CGACCAGGTGAAGGCCATCAATTTCCTGCCTGTGGA...CTCCCTTTTCTGGGCACCCAAACTCTTGTATATATATACTCTTCTCTCCTGGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS-3UTR CAA 90 bp TGTGTGTGTGTGTGTGTGTGTGTGGTGAGTCCCCTGGAAGAAGCAACATTTAAGTCCTGTGATGTCATGTaGGAAATGCTTCGGGTGTTG +
Preference number: 5 (lower is better)
Translates to: CVCVCVCVVSPLEEATFKSCDVM*EMLRVL
Trigger: CAACACCCGAAGCATTTCCAACATGACATCACAGGA...CTTAAATGTTGCTTCTTCCAGGGGACTCACCACACACACACACACACACACACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp CCCGGTCAGTCCATCTGTCCATGCCTTCATTTGATCAAATGTGCACCCACTATCATCCACTTGTCTGTTTaGGACCAGGAAAGATCATCC +
Preference number: 5 (lower is better)
Translates to: PGQSICPCLHLIKCAPTIIHLSV*DQERSS
Trigger: GGATGATCTTTCCTGGTCCAAAACAGACAAGTGGAT...GATAGTGGGTGCACATTTGATCAAATGAAGGCATGGACAGATGGACTGACCGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp AGGATGATGGAAGGAGATTCTAATGCTGAGAAATGGAGAGAAAGCCCTGATAATCCCACAGCAGTCAGATaGTTCAGGTTGGGCTGGGAG +
Preference number: 5 (lower is better)
Translates to: RMMEGDSNAEKWRESPDNPTAVR*FRLGWE
Trigger: CTCCCAGCCCAACCTGAACAATCTGACTGCTGTGGG...ATTATCAGGGCTTTCTCTCCATTTCTCAGCATTAGAATCTCCTTCCATCATCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp AGGAGAGGAGAGGATATGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCCTTTGGTTCCTCCTaGGCAAAAGTCTCAATGGTT +
Preference number: 5 (lower is better)
Translates to: RRGEDMVCVCVCVCVCVCSFGSS*AKVSMV
Trigger: AACCATTGAGACTTTTGCCAAGGAGGAACCAAAGGA...ACACACACACACACACACACACACACACACACACACCATATCCTCTCCTCTCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp TTCTTCCTGTCTGATGAGGAGGAGACTCTTCACATCTGCTCAGCCACCTACTCCTTCTCTTCCTCATTGTaGTTGGTGGATGATCCTGTT +
Preference number: 5 (lower is better)
Translates to: FFLSDEEETLHICSATYSFSSSL*LVDDPV
Trigger: AACAGGATCATCCACCAACAACAATGAGGAAGAGAA...GGAGTAGGTGGCTGAGCAGATGTGAAGAGTCTCCTCCTCATCAGACAGGAAGAA
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS-3UTR CAA 90 bp AAAGAAGACAGGACATCAGCTAGGCAGACAACTGTAATCCCAATACTCAGAAGGGTCAGATTGTTCAGGTaGGGCTGGGAGTTCTGGATA +
Preference number: 5 (lower is better)
Translates to: KEDRTSARQTTVIPILRRVRLFR*GWEFWI
Trigger: TATCCAGAACTCCCAGCCCAACCTGAACAATCTGAC...CCTTCTGAGTATTGGGATTACAGTTGTCTGCCTAGCTGATGTCCTGTCTTCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp ACACCCACAACCACTGTGCACTCACAGGTGCAGCATATGCAAACACAAGTGATATCCTTTGGTTCCTCCTaGGCAAAAGTCTCAATGGTT +
Preference number: 5 (lower is better)
Translates to: TPTTTVHSQVQHMQTQVISFGSS*AKVSMV
Trigger: AACCATTGAGACTTTTGCCAAGGAGGAACCAAAGGA...TATCACTTGTGTTTGCATATGCTGCACCTGTGAGTGCACAGTGGTTGTGGGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp AGGAGAAGGATGATGGAAGGAGATTCTAATGCTGAGAAATGGAGAGAAAGCCCTACGGCCCTGTGGTCATaGATCTTTTCAGTGGACACA +
Preference number: 5 (lower is better)
Translates to: RRRMMEGDSNAEKWRESPTALWS*IFSVDT
Trigger: TGTGTCCACTGAAAAGATCAATGACCACAGGGCCGT...AGGGCTTTCTCTCCATTTCTCAGCATTAGAATCTCCTTCCATCATCCTTCTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp AGGAGTTGCTGTAGTAACAACTATACAAGACAGCCTATGGGAGACAAACGAGATGTCAGATTGTTCAGGTaGGGCTGGGAGTTCTGGATA +
Preference number: 5 (lower is better)
Translates to: RSCCSNNYTRQPMGDKRDVRLFR*GWEFWI
Trigger: TATCCAGAACTCCCAGCCCAACCTGAACAATCTGAC...ATCTCGTTTGTCTCCCATAGGCTGTCTTGTATAGTTGTTACTACAGCAACTCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp ACCATGACATATGCACATGAGGAAGACAGCTTGGTGTGCTCAACACATCATGCATGTCTTTTCAGCCGCTaGGTTAGTTTCTCCACAAAT +
Preference number: 5 (lower is better)
Translates to: TMTYAHEEDSLVCSTHHACLFSR*VSFSTN
Trigger: ATTTGTGGAGAAACTAACCAAGCGGCTGAAAAGACA...TGCATGATGTGTTGAGCACACCAAGCTGTCTTCCTCATGTGCATATGTCATGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp AACATATTTGCACAGAAACACATCCAGCTGCCTAGGAGAGGAGAGGATATGGTGTTCTCTTCCTCATTGTaGTTGGTGGATGATCCTGTT +
Preference number: 5 (lower is better)
Translates to: NIFAQKHIQLPRRGEDMVFSSSL*LVDDPV
Trigger: AACAGGATCATCCACCAACAACAATGAGGAAGAGAA...CACCATATCCTCTCCTCTCCTAGGCAGCTGGATGTGTTTCTGTGCAAATATGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS-3UTR CAA 90 bp AGGAGAAGGATGATGGAAGGAGATTCTAATGCTGAGAAATGGAGAGAAAGCCCTTCTTCCTCATTGTTGTaGGTGGATGATCCTGTTTTC +
Preference number: 5 (lower is better)
Translates to: RRRMMEGDSNAEKWRESPSSSLL*VDDPVF
Trigger: GAAAACAGGATCATCCACCAACAACAATGAGGAAGA...AGGGCTTTCTCTCCATTTCTCAGCATTAGAATCTCCTTCCATCATCCTTCTCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS CCA 72 bp CCGTCCAGGAGCCGTTGGCCAGGCACTTGCGCACCTTaGGCCCCACCACCTCGCGTTCGCCCCGGCACACAT +
Preference number: 6 (lower is better)
Translates to: PSRSRWPGTCAP*APPPRVRPGTH
Trigger: ATGTGTGCCGGGGCGAACGCGAGGTGGTGGGGCCCAAGGTGCGCAAGTGCCTGGCCAACGGCTCCTGGACGG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025338.16
ENSMUST00000172789.2
ENSMUST00000173823.8
ENSMUST00000174456.8
CDS CAA 72 bp TCCGTCCAGGAGCCGTTGGCCAGGCACTTGCGCACCTaGGGCCCCACCACCTCGCGTTCGCCCCGGCACACA +
Preference number: 6 (lower is better)
Translates to: SVQEPLARHLRT*GPTTSRSPRHT
Trigger: TGTGTGCCGGGGCGAACGCGAGGTGGTGGGGCCCAAGGTGCGCAAGTGCCTGGCCAACGGCTCCTGGACGGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025338.16
ENSMUST00000172789.2
ENSMUST00000173823.8
ENSMUST00000174456.8
CDS GCA 72 bp TGTCCATATCCGTCCAGGAGCCGTTGGCCAGGCACTTaGGCACCTTGGGCCCCACCACCTCGCGTTCGCCCC +
Preference number: 6 (lower is better)
Translates to: CPYPSRSRWPGT*APWAPPPRVRP
Trigger: GGGGCGAACGCGAGGTGGTGGGGCCCAAGGTGCGCAAGTGCCTGGCCAACGGCTCCTGGACGGATATGGACA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025338.16
ENSMUST00000172789.2
ENSMUST00000173823.8
ENSMUST00000174456.8
CDS GCA 72 bp GTGGCGTTCGATTCACCTGGCAGTGGGGCTTGGGGGTaGTCCACTGGCCCTGACTACAGATGCTCCGGGAGC +
Preference number: 6 (lower is better)
Translates to: VAFDSPGSGAWG*STGPDYRCSGS
Trigger: GCTCCCGGAGCATCTGTAGTCAGGGCCAGTGGAGCACCCCCAAGCCCCACTGCCAGGTGAATCGAACGCCAC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS CCA 72 bp AGCGACTGGGTGTGTCCATATCCGTCCAGGAGCCGTTaGCCAGGCACTTGCGCACCTTGGGCCCCACCACCT +
Preference number: 6 (lower is better)
Translates to: SDWVCPYPSRSR*PGTCAPWAPPP
Trigger: AGGTGGTGGGGCCCAAGGTGCGCAAGTGCCTGGCCAACGGCTCCTGGACGGATATGGACACACCCAGTCGCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000025338.16
ENSMUST00000172789.2
ENSMUST00000173823.8
ENSMUST00000174456.8
CDS CCA 72 bp GCGGAGACTGCGATGAGGGAAGGGTGCCACAGCGACTaGGTGTGTCCATATCCGTCCAGGAGCCGTTGGCCA +
Preference number: 6 (lower is better)
Translates to: AETAMREGCHSD*VCPYPSRSRWP
Trigger: TGGCCAACGGCTCCTGGACGGATATGGACACACCCAGTCGCTGTGGCACCCTTCCCTCATCGCAGTCTCCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
CDS CAA 90 bp GTGTCCATATCCGTCCAGGAGCCGTTGGCCAGGCACTTGCGCACCTaGGGCCCCACCACCTCGCGTTCGCCCCGGCACACATATTCAATC +
Preference number: 6 (lower is better)
Translates to: VSISVQEPLARHLRT*GPTTSRSPRHTYSI
Trigger: GATTGAATATGTGTGCCGGGGCGAACGCGAGGTGGTGGGGCCCAAGGTGCGCAAGTGCCTGGCCAACGGCTCCTGGACGGATATGGACAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000025338.16
ENSMUST00000172789.2
ENSMUST00000173823.8
ENSMUST00000174456.8
CDS TCA 72 bp CCTCCCACACCTGTTCATGCGGAGCGGAGACTGCGATaGGGGAAGGGTGCCACAGCGACTGGGTGTGTCCAT +
Preference number: 6 (lower is better)
Translates to: PPTPVHAERRLR*GKGATATGCVH
Trigger: ATGGACACACCCAGTCGCTGTGGCACCCTTCCCTCATCGCAGTCTCCGCTCCGCATGAACAGGTGTGGGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
CDS GCA 72 bp TGTTCATGCGGAGCGGAGACTGCGATGAGGGAAGGGTaGCACAGCGACTGGGTGTGTCCATATCCGTCCAGG +
Preference number: 6 (lower is better)
Translates to: CSCGAETAMREG*HSDWVCPYPSR
Trigger: CCTGGACGGATATGGACACACCCAGTCGCTGTGGCACCCTTCCCTCATCGCAGTCTCCGCTCCGCATGAACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000173823.8
CDS TCA 72 bp GGGAAACAGCGCCCCGATGTATACTGCACGCCGTTCTaGGTGTGGCGTTCGATTCACCTGGCAGTGGGGCTT +
Preference number: 6 (lower is better)
Translates to: GKQRPDVYCTPF*VWRSIHLAVGL
Trigger: AAGCCCCACTGCCAGGTGAATCGAACGCCACACTCAGAACGGCGTGCAGTATACATCGGGGCGCTGTTTCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000025338.16
CDS CCA 72 bp GTCACATCGGAAATCCACCCGGGCTCCATCCAGAGCTaGGAGGTCCCCACCCGTCAGGAAAACCTTCCCATT +
Preference number: 6 (lower is better)
Translates to: VTSEIHPGSIQS*EVPTRQENLPI
Trigger: AATGGGAAGGTTTTCCTGACGGGTGGGGACCTCCCAGCTCTGGATGGAGCCCGGGTGGATTTCCGATGTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172789.2
ENSMUST00000174456.8
CDS CCA 72 bp CGGCTGGGGGAGACCCTCCGATCCACTTGTCTGTTTTaGACCAGGAAAGATCATCCTTGGTGCTGTCGTAGT +
Preference number: 6 (lower is better)
Translates to: RLGETLRSTCLF*TRKDHPWCCRS
Trigger: ACTACGACAGCACCAAGGATGATCTTTCCTGGTCCAAAACAGACAAGTGGATCGGAGGGTCTCCCCCAGCCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS CCA 72 bp TGTGACAGGAAACGGAATGTCTTGATGACCAAGGTCTaGTCGGCTGGGGGAGACCCTCCGATCCACTTGTCT +
Preference number: 6 (lower is better)
Translates to: CDRKRNVLMTKV*SAGGDPPIHLS
Trigger: AGACAAGTGGATCGGAGGGTCTCCCCCAGCCGACCAGACCTTGGTCATCAAGACATTCCGTTTCCTGTCACA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS CAA 72 bp AAGGTCTGGTCGGCTGGGGGAGACCCTCCGATCCACTaGTCTGTTTTGGACCAGGAAAGATCATCCTTGGTG +
Preference number: 6 (lower is better)
Translates to: KVWSAGGDPPIH*SVLDQERSSLV
Trigger: CACCAAGGATGATCTTTCCTGGTCCAAAACAGACAAGTGGATCGGAGGGTCTCCCCCAGCCGACCAGACCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS CAA 90 bp TGGCGGATGGATGTGTCCGAAAGAACGTTGGAAACCGCTGTCGGTTaGACAAGGCTGGTGAGCTGGAGCCATATGAGAGCTTGCTGTCGT +
Preference number: 6 (lower is better)
Translates to: WRMDVSERTLETAVG*TRLVSWSHMRACCR
Trigger: ACGACAGCAAGCTCTCATATGGCTCCAGCTCACCAGCCTTGTCAAACCGACAGCGGTTTCCAACGTTCTTTCGGACACATCCATCCGCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000174347.2
CDS CCA 72 bp GAAACGGAATGTCTTGATGACCAAGGTCTGGTCGGCTaGGGGAGACCCTCCGATCCACTTGTCTGTTTTGGA +
Preference number: 6 (lower is better)
Translates to: ETECLDDQGLVG*GRPSDPLVCFG
Trigger: TCCAAAACAGACAAGTGGATCGGAGGGTCTCCCCCAGCCGACCAGACCTTGGTCATCAAGACATTCCGTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS CAA 90 bp ACTGAGACGGAGATAAAGAGTTTCTGTGACAGGAAACGGAATGTCTaGATGACCAAGGTCTGGTCGGCTGGGGGAGACCCTCCGATCCAC +
Preference number: 6 (lower is better)
Translates to: TETEIKSFCDRKRNV*MTKVWSAGGDPPIH
Trigger: GTGGATCGGAGGGTCTCCCCCAGCCGACCAGACCTTGGTCATCAAGACATTCCGTTTCCTGTCACAGAAACTCTTTATCTCCGTCTCAGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS CAA 72 bp GAGATAAAGAGTTTCTGTGACAGGAAACGGAATGTCTaGATGACCAAGGTCTGGTCGGCTGGGGGAGACCCT +
Preference number: 6 (lower is better)
Translates to: EIKSFCDRKRNV*MTKVWSAGGDP
Trigger: AGGGTCTCCCCCAGCCGACCAGACCTTGGTCATCAAGACATTCCGTTTCCTGTCACAGAAACTCTTTATCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000025338.16
ENSMUST00000172792.8
CDS TCA 72 bp ACACATATTCAATCTCATAGTCCACAGGCAGGAAATTaGTGGCCTTCACCTGGTCGCGAGTCAAGCCACGGT +
Preference number: 6 (lower is better)
Translates to: THIQSHSPQAGN*WPSPGRESSHG
Trigger: ACCGTGGCTTGACTCGCGACCAGGTGAAGGCCATCAATTTCCTGCCTGTGGACTATGAGATTGAATATGTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000025338.16
ENSMUST00000172789.2
ENSMUST00000173823.8
ENSMUST00000174456.8
CDS CCA 72 bp GGAAAACCTTCCCATTTTCCAGGGTCAAATAAGACTTaGAGCAGATTCGGACACAGCGACTGGGTGTGTCCA +
Preference number: 6 (lower is better)
Translates to: GKPSHFPGSNKT*SRFGHSDWVCP
Trigger: TGGACACACCCAGTCGCTGTGTCCGAATCTGCTCCAAGTCTTATTTGACCCTGGAAAATGGGAAGGTTTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000025338.16
ENSMUST00000172789.2
ENSMUST00000174456.8