Pregenerated sensors for GABARAPL2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031950Ensembl transcript IDs: ENSMUST00000034428.8
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCCCCTGCAAGCCCTTCTCCAAGCCTGACAGGCAGGAGCCACTCCTaGCTCGTGGAGGTGAATGACGGACATGGTCACACCGTGATGCCT | + |
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Preference number: 1 (lower is better) Translates to: SPASPSPSLTGRSHS*LVEVNDGHGHTVMP Trigger: AGGCATCACGGTGTGACCATGTCCGTCATTCACCTCCACGAGTCAGGAGTGGCTCCTGCCTGTCAGGCTTGGAGAAGGGCTTGCAGGGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034428.8 |
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| 3UTR TCA 90 bp | TCCAAGCCTGACAGGCAGGAGCCACTCCTGACTCGTGGAGGTGAATaGCGGACATGGTCACACCGTGATGCCTTTATAAGGAGGCTTTAT | + |
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Preference number: 1 (lower is better) Translates to: SKPDRQEPLLTRGGE*RTWSHRDAFIRRLY Trigger: ATAAAGCCTCCTTATAAAGGCATCACGGTGTGACCATGTCCGTCATTCACCTCCACGAGTCAGGAGTGGCTCCTGCCTGTCAGGCTTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034428.8 |
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| 3UTR TCA 90 bp | TACAAATGCACTAGTAGGTCTGTGTGGAGGCTCTGGCAGAGTAACTaGGAACAGCCAGTTATTTACAAGAGACACAAGCAGGAAGGGCGC | + |
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Preference number: 1 (lower is better) Translates to: YKCTSRSVWRLWQSN*EQPVIYKRHKQEGR Trigger: GCGCCCTTCCTGCTTGTGTCTCTTGTAAATAACTGGCTGTTCTCAGTTACTCTGCCAGAGCCTCCACACAGACCTACTAGTGCATTTGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034428.8 |
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| 3UTR TCA 90 bp | TGTGGTTGCTGGGAATTAAGCTCAGGACCCATTGCCCTTAACTGCTaGGCCATCTCTTCAACCCCCTCTGCTTTACTAACATACACACAT | + |
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Preference number: 1 (lower is better) Translates to: CGCWELSSGPIALNC*AISSTPSALLTYTH Trigger: ATGTGTGTATGTTAGTAAAGCAGAGGGGGTTGAAGAGATGGCTCAGCAGTTAAGGGCAATGGGTCCTGAGCTTAATTCCCAGCAACCACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034428.8 |
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| 3UTR-3UTR TCA 90 bp | ACCCACATAGCAGTTCACAACTGTCTAGCTCCAAATCCAGACCGCACCCACACAGCCCTTCTCCAAGCCTaGCAGGCAGGAGCCACTCCT | + |
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Preference number: 2 (lower is better) Translates to: THIAVHNCLAPNPDRTHTALLQA*QAGATP Trigger: AGGAGTGGCTCCTGCCTGTCAGGCTTGGAGAAGGGC...TGTGTGGGTGCGGTCTGGATTTGGAGCTAGACAGTTGTGAACTGCTATGTGGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034428.8 |
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| 3UTR-3UTR GCA 90 bp | ACCCACATAGCAGTTCACAACTGTCTAGCTCCAAATCCAGACCGCACCCACACAGGCCTCTCTCTCCCCTaGAAGCCCTTCTCCAAGCCT | + |
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Preference number: 2 (lower is better) Translates to: THIAVHNCLAPNPDRTHTGLSLP*KPFSKP Trigger: AGGCTTGGAGAAGGGCTTGCAGGGGAGAGAGAGGCC...TGTGTGGGTGCGGTCTGGATTTGGAGCTAGACAGTTGTGAACTGCTATGTGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034428.8 |
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| 3UTR-3UTR CCA 90 bp | ATGAATGCCCTATCTGCATATACACCTGCACACAGGGAAAGGGCATCAGATCACCTTTTCCACAGGACCTaGGTTCAATTCCCAGCACCC | + |
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Preference number: 2 (lower is better) Translates to: MNALSAYTPAHRERASDHLFHRT*VQFPAP Trigger: GGGTGCTGGGAATTGAACCCAGGTCCTGTGGAAAAG...GTGATCTGATGCCCTTTCCCTGTGTGCAGGTGTATATGCAGATAGGGCATTCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034428.8 |
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| 3UTR-3UTR TCA 90 bp | ACCCACATAGCAGTTCACAACTGTCTAGCTCCAAATCCAGACCGCACCCACACAAAACCAATCCCCTTTTaGTATCAACCAGCACTTCCC | + |
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Preference number: 2 (lower is better) Translates to: THIAVHNCLAPNPDRTHTKPIPF*YQPALP Trigger: GGGAAGTGCTGGTTGATATCAAAAGGGGATTGGTTT...TGTGTGGGTGCGGTCTGGATTTGGAGCTAGACAGTTGTGAACTGCTATGTGGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034428.8 |
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| 3UTR-3UTR TCA 90 bp | GGACCTGGGTTCAATTCCCAGCACCCACATAGCAGTTCACAACTGTCTAGCTCCACCTTTTTACAGTCCTaGAATCTGAACCTGTTGACT | + |
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Preference number: 2 (lower is better) Translates to: GPGFNSQHPHSSSQLSSSTFLQS*NLNLLT Trigger: AGTCAACAGGTTCAGATTTCAGGACTGTAAAAAGGT...GGAGCTAGACAGTTGTGAACTGCTATGTGGGTGCTGGGAATTGAACCCAGGTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034428.8 |
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| 3UTR-3UTR CCA 90 bp | GCCCTATCTGCATATACACCTGCACACAGGGAAAGGGCATCAGATCACATTATAACTAGTAGGTCTGTGTaGAGGCTCTGGCAGAGTAAC | + |
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Preference number: 2 (lower is better) Translates to: ALSAYTPAHRERASDHIITSRSV*RLWQSN Trigger: GTTACTCTGCCAGAGCCTCCACACAGACCTACTAGT...TATAATGTGATCTGATGCCCTTTCCCTGTGTGCAGGTGTATATGCAGATAGGGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034428.8 |
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| 3UTR-3UTR GCA 90 bp | TATGAATGCCCTATCTGCATATACACCTGCACACAGGGAAAGGGCATCAGATCAAAATCCAGTTACAAATaGACTAGTAGGTCTGTGTGG | + |
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Preference number: 2 (lower is better) Translates to: YECPICIYTCTQGKGIRSKSSYK*TSRSVW Trigger: CCACACAGACCTACTAGTGCATTTGTAACTGGATTT...TGATCTGATGCCCTTTCCCTGTGTGCAGGTGTATATGCAGATAGGGCATTCATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034428.8 |
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| 3UTR-3UTR GCA 90 bp | GGTTCAATTCCCAGCACCCACATAGCAGTTCACAACTGTCTAGCTCCAAATCCAGTAAAAGCGAGACTTTaGAGTATACACCTTTTTACA | + |
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Preference number: 2 (lower is better) Translates to: GSIPSTHIAVHNCLAPNPVKARL*SIHLFT Trigger: TGTAAAAAGGTGTATACTGCAAAGTCTCGCTTTTAC...TGGATTTGGAGCTAGACAGTTGTGAACTGCTATGTGGGTGCTGGGAATTGAACC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034428.8 |
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| 3UTR TCA 72 bp | AGCCCTTCTCCAAGCCTGACAGGCAGGAGCCACTCCTaGCTCGTGGAGGTGAATGACGGACATGGTCACACC | + |
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Preference number: 3 (lower is better) Translates to: SPSPSLTGRSHS*LVEVNDGHGHT Trigger: GGTGTGACCATGTCCGTCATTCACCTCCACGAGTCAGGAGTGGCTCCTGCCTGTCAGGCTTGGAGAAGGGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034428.8 |
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| 3UTR TCA 72 bp | GACAGGCAGGAGCCACTCCTGACTCGTGGAGGTGAATaGCGGACATGGTCACACCGTGATGCCTTTATAAGG | + |
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Preference number: 3 (lower is better) Translates to: DRQEPLLTRGGE*RTWSHRDAFIR Trigger: CCTTATAAAGGCATCACGGTGTGACCATGTCCGTCATTCACCTCCACGAGTCAGGAGTGGCTCCTGCCTGTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034428.8 |
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| 3UTR-3UTR CAA 90 bp | ACCCACATAGCAGTTCACAACTGTCTAGCTCCAAATCCAGACCGCACCCACACAAAAACCAATCCCCTTTaGATATCAACCAGCACTTCC | + |
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Preference number: 3 (lower is better) Translates to: THIAVHNCLAPNPDRTHTKTNPL*ISTSTS Trigger: GGAAGTGCTGGTTGATATCAAAAGGGGATTGGTTTT...TGTGTGGGTGCGGTCTGGATTTGGAGCTAGACAGTTGTGAACTGCTATGTGGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034428.8 |
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| 3UTR-3UTR CAA 90 bp | CAGCACCCACATAGCAGTTCACAACTGTCTAGCTCCAAATCCAGACCGCACCCAAACCTGTTGACTGTATaGACCACTGAAAAACCAATC | + |
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Preference number: 3 (lower is better) Translates to: QHPHSSSQLSSSKSRPHPNLLTV*TTEKPI Trigger: GATTGGTTTTTCAGTGGTCAATACAGTCAACAGGTT...TGGGTGCGGTCTGGATTTGGAGCTAGACAGTTGTGAACTGCTATGTGGGTGCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034428.8 |
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| 3UTR TCA 72 bp | ACTAGTAGGTCTGTGTGGAGGCTCTGGCAGAGTAACTaGGAACAGCCAGTTATTTACAAGAGACACAAGCAG | + |
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Preference number: 3 (lower is better) Translates to: TSRSVWRLWQSN*EQPVIYKRHKQ Trigger: CTGCTTGTGTCTCTTGTAAATAACTGGCTGTTCTCAGTTACTCTGCCAGAGCCTCCACACAGACCTACTAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034428.8 |
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| 3UTR GCA 72 bp | GATCACATTATATACGGTTGTGAGCCACCATGTGGTTaGTGGGAATTAAGCTCAGGACCCATTGCCCTTAAC | + |
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Preference number: 3 (lower is better) Translates to: DHIIYGCEPPCG*WELSSGPIALN Trigger: GTTAAGGGCAATGGGTCCTGAGCTTAATTCCCAGCAACCACATGGTGGCTCACAACCGTATATAATGTGATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034428.8 |
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| 3UTR-3UTR CAA 90 bp | TATGAATGCCCTATCTGCATATACACCTGCACACAGGGAAAGGGCATCAGATCAGGTAAAAGCGAGACTTaGCAGTATACACCTTTTTAC | + |
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Preference number: 3 (lower is better) Translates to: YECPICIYTCTQGKGIRSGKSET*QYTPFY Trigger: GTAAAAAGGTGTATACTGCAAAGTCTCGCTTTTACC...TGATCTGATGCCCTTTCCCTGTGTGCAGGTGTATATGCAGATAGGGCATTCATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034428.8 |
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| 3UTR TCA 72 bp | AAGCGAGACTTTGCAGTATACACCTTTTTACAGTCCTaGAATCTGAACCTGTTGACTGTATTGACCACTGAA | + |
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Preference number: 3 (lower is better) Translates to: KRDFAVYTFLQS*NLNLLTVLTTE Trigger: TTCAGTGGTCAATACAGTCAACAGGTTCAGATTTCAGGACTGTAAAAAGGTGTATACTGCAAAGTCTCGCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034428.8 |
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| 3UTR GCA 72 bp | TTTTATCTGTATGAATGCCCTATCTGCATATACACCTaGACACAGGGAAAGGGCATCAGATCACATTATATA | + |
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Preference number: 3 (lower is better) Translates to: FYLYECPICIYT*TQGKGIRSHYI Trigger: TATATAATGTGATCTGATGCCCTTTCCCTGTGTGCAGGTGTATATGCAGATAGGGCATTCATACAGATAAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034428.8 |
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| CDS-3UTR TCA 90 bp | TATGAATGCCCTATCTGCATATACACCTGCACACAGGGAAAGGGCATCAGATCAATGATCCACATGAACTaGGCCACAGTGATGTCCGAG | + |
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Preference number: 4 (lower is better) Translates to: YECPICIYTCTQGKGIRSMIHMN*ATVMSE Trigger: CTCGGACATCACTGTGGCTCAGTTCATGTGGATCAT...TGATCTGATGCCCTTTCCCTGTGTGCAGGTGTATATGCAGATAGGGCATTCATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034428.8 |
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