Pregenerated sensors for GABARAPL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030161Ensembl transcript IDs: ENSMUST00000032264.9, ENSMUST00000204487.3, ENSMUST00000204956.2
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TGTGAGACCCAAGAGACTGCAGCAGGGAGAGGACGAGTGGGCAAGTGGGCAACCTGGGAGCCCTCCCTCTaGTTCCCCAAGTCCCACGCG | + |
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Preference number: 2 (lower is better) Translates to: CETQETAAGRGRVGKWATWEPSL*FPKSHA Trigger: CGCGTGGGACTTGGGGAACCAGAGGGAGGGCTCCCA...GGTTGCCCACTTGCCCACTCGTCCTCTCCCTGCTGCAGTCTCTTGGGTCTCACA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032264.9 |
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| 3UTR-3UTR CCA 90 bp | CTGAAGCTGACAAAACAGACGTACAGATTGCTCCCAACAGGGAGGACGCTCTTCCTTGCGTCTCCTCCATaGTTGGGAGCCCTCCCTCTG | + |
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Preference number: 2 (lower is better) Translates to: LKLTKQTYRLLPTGRTLFLASPP*LGALPL Trigger: CAGAGGGAGGGCTCCCAACCATGGAGGAGACGCAAG...GAAGAGCGTCCTCCCTGTTGGGAGCAATCTGTACGTCTGTTTTGTCAGCTTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032264.9 |
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| 3UTR-3UTR GCA 90 bp | CTCACTCCATCTTCTTTGAATAGCAGATGCCACGGAGGGAGACAGCTGGCCATCCCGATGTCTTCACCTTaGGTCTCCTCCATGGTTGGG | + |
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Preference number: 2 (lower is better) Translates to: LTPSSLNSRCHGGRQLAIPMSSP*VSSMVG Trigger: CCCAACCATGGAGGAGACGCAAGGTGAAGACATCGG...GATGGCCAGCTGTCTCCCTCCGTGGCATCTGCTATTCAAAGAAGATGGAGTGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032264.9 |
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| 3UTR-3UTR GCA 90 bp | TTACCTTGTAACCCGGACCCTCCACACACAGACACGCTGCCCCTGTACATGAGACGCTCTCACAGCCAATaGAACACAAGTTCTTCCTGG | + |
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Preference number: 2 (lower is better) Translates to: LPCNPDPPHTDTLPLYMRRSHSQ*NTSSSW Trigger: CCAGGAAGAACTTGTGTTGCATTGGCTGTGAGAGCG...TCTCATGTACAGGGGCAGCGTGTCTGTGTGTGGAGGGTCCGGGTTACAAGGTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032264.9 |
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| 3UTR CAA 90 bp | CCAAAAATCAAACCTCTGCCCAAAGAGCCGGCAGTTGCTGCTAAATaGTATTCTTCTCTAGCGGCCACTTGCCCTCCTCCCAAACCTCTG | + |
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Preference number: 2 (lower is better) Translates to: PKIKPLPKEPAVAAK*YSSLAATCPPPKPL Trigger: CAGAGGTTTGGGAGGAGGGCAAGTGGCCGCTAGAGAAGAATACAATTTAGCAGCAACTGCCGGCTCTTTGGGCAGAGGTTTGATTTTTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032264.9 |
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| 3UTR-3UTR CCA 90 bp | TTGTATTCTTCTCTAGCGGCCACTTGCCCTCCTCCCAAACCTCTGATGAAACTGAACACAAGTTCTTCCTaGGCTGAGGAAGCAGAGAAA | + |
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Preference number: 2 (lower is better) Translates to: LYSSLAATCPPPKPLMKLNTSSS*AEEAEK Trigger: TTTCTCTGCTTCCTCAGCCCAGGAAGAACTTGTGTT...CAGTTTCATCAGAGGTTTGGGAGGAGGGCAAGTGGCCGCTAGAGAAGAATACAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032264.9 |
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| 3UTR CCA 72 bp | GTGAGACCCAAGAGACTGCAGCAGGGAGAGGACGAGTaGGCAAGTGGGCAACCTAGCTTACCTTGTAACCCG | + |
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Preference number: 3 (lower is better) Translates to: VRPKRLQQGEDE*ASGQPSLPCNP Trigger: CGGGTTACAAGGTAAGCTAGGTTGCCCACTTGCCCACTCGTCCTCTCCCTGCTGCAGTCTCTTGGGTCTCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032264.9 |
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| 3UTR TCA 72 bp | CATGAAACTCTGGCGCCCCTCTCACTCCATCTTCTTTaGATAGCAGATGCCACGGAGGGAGACAGCTGGCCA | + |
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Preference number: 3 (lower is better) Translates to: HETLAPLSLHLL*IADATEGDSWP Trigger: TGGCCAGCTGTCTCCCTCCGTGGCATCTGCTATTCAAAGAAGATGGAGTGAGAGGGGCGCCAGAGTTTCATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032264.9 |
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| 3UTR-3UTR CAA 90 bp | CTGAAGCTGACAAAACAGACGTACAGATTGCTCCCAACAGGGAGGACGCTCTTCCCCGATGTCTTCACCTaGCGTCTCCTCCATGGTTGG | + |
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Preference number: 3 (lower is better) Translates to: LKLTKQTYRLLPTGRTLFPDVFT*RLLHGW Trigger: CCAACCATGGAGGAGACGCAAGGTGAAGACATCGGG...GAAGAGCGTCCTCCCTGTTGGGAGCAATCTGTACGTCTGTTTTGTCAGCTTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032264.9 |
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| 3UTR TCA 72 bp | GTTCGAATGTCTCCTGCCACAACTGGGGCGGAGCTATaGAGCCTGGGTGGAAGAAAAGGACTAGGAGAGGAA | + |
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Preference number: 3 (lower is better) Translates to: VRMSPATTGAEL*SLGGRKGLGEE Trigger: TTCCTCTCCTAGTCCTTTTCTTCCACCCAGGCTTCATAGCTCCGCCCCAGTTGTGGCAGGAGACATTCGAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032264.9 |
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| 3UTR-3UTR CAA 90 bp | CTCACTCCATCTTCTTTGAATAGCAGATGCCACGGAGGGAGACAGCTGGCCATCGCAGTTGCTGCTAAATaGTATTCTTCTCTAGCGGCC | + |
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Preference number: 3 (lower is better) Translates to: LTPSSLNSRCHGGRQLAIAVAAK*YSSLAA Trigger: GGCCGCTAGAGAAGAATACAATTTAGCAGCAACTGC...GATGGCCAGCTGTCTCCCTCCGTGGCATCTGCTATTCAAAGAAGATGGAGTGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032264.9 |
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| 3UTR GCA 72 bp | GTTGCTGCTAAATTGTATTCTTCTCTAGCGGCCACTTaGCCTCCTCCCAAACCTCTGATGAAACTGCACGAG | + |
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Preference number: 3 (lower is better) Translates to: VAAKLYSSLAAT*PPPKPLMKLHE Trigger: CTCGTGCAGTTTCATCAGAGGTTTGGGAGGAGGGCAAGTGGCCGCTAGAGAAGAATACAATTTAGCAGCAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032264.9 |
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| 3UTR GCA 72 bp | CCGTGCGGCTTGTACAAATGCCAAAAATCAAACCTCTaGCCAAAGAGCCGGCAGTTGCTGCTAAATTGTATT | + |
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Preference number: 3 (lower is better) Translates to: PCGLYKCQKSNL*PKSRQLLLNCI Trigger: AATACAATTTAGCAGCAACTGCCGGCTCTTTGGGCAGAGGTTTGATTTTTGGCATTTGTACAAGCCGCACGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032264.9 |
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| CDS-3UTR TCA 90 bp | TCATGTCGTCCCCATCCCGCTCTCACAGCCAATGCAACACAAGTTCTTCCTGGGGAGCCTTCTCCACGATaGCCGGCACCCGGTCCGGGT | + |
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Preference number: 4 (lower is better) Translates to: SCRPHPALTANATQVLPGEPSPR*PAPGPG Trigger: ACCCGGACCGGGTGCCGGTCATCGTGGAGAAGGCTC...CCCAGGAAGAACTTGTGTTGCATTGGCTGTGAGAGCGGGATGGGGACGACATGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000032264.9 ENSMUST00000204956.2 |
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| CDS-3UTR TCA 90 bp | TGCACGAGAGAAAGCTCACAGCAAAGCTGTGATTCATGTCGTCCCCATCCCGCTGAGCCTTCTCCACGATaGCCGGCACCCGGTCCGGGT | + |
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Preference number: 4 (lower is better) Translates to: CTRESSQQSCDSCRPHPAEPSPR*PAPGPG Trigger: ACCCGGACCGGGTGCCGGTCATCGTGGAGAAGGCTC...AGCGGGATGGGGACGACATGAATCACAGCTTTGCTGTGAGCTTTCTCTCGTGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032264.9 |
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| CDS-3UTR TCA 90 bp | CCCCATCCCGCTCTCACAGCCAATGCAACACAAGTTCTTCCTGGGCCCCAAGTCAGAACTGGCCAACAGTaGGGTCGGAGGGCACAAGGT | + |
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Preference number: 4 (lower is better) Translates to: PHPALTANATQVLPGPQVRTGQQ*GRRAQG Trigger: ACCTTGTGCCCTCCGACCTCACTGTTGGCCAGTTCT...GACTTGGGGCCCAGGAAGAACTTGTGTTGCATTGGCTGTGAGAGCGGGATGGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000204956.2 |
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| CDS-3UTR CCA 90 bp | ACTGCACGAGAGAAAGCTCACAGCAAAGCTGTGATTCATGTCGTCCCCATCCCGTGGGAGCCCTCCCTCTaGTTCCCCAAGTCCCACGCG | + |
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Preference number: 4 (lower is better) Translates to: TAREKAHSKAVIHVVPIPWEPSL*FPKSHA Trigger: CGCGTGGGACTTGGGGAACCAGAGGGAGGGCTCCCA...CGGGATGGGGACGACATGAATCACAGCTTTGCTGTGAGCTTTCTCTCGTGCAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000204487.3 |
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| CDS-3UTR CCA 90 bp | TTCTTCTCTAGCGGCCACTTGCCCTCCTCCCAAACCTCTGATGAAACTGCACGACTTGCGTCTCCTCCATaGTTGGGAGCCCTCCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: FFSSGHLPSSQTSDETARLASPP*LGALPL Trigger: CAGAGGGAGGGCTCCCAACCATGGAGGAGACGCAAG...TCGTGCAGTTTCATCAGAGGTTTGGGAGGAGGGCAAGTGGCCGCTAGAGAAGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204487.3 |
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| CDS-3UTR GCA 90 bp | TGCACGAGAGAAAGCTCACAGCAAAGCTGTGATTCATGTCGTCCCCATCCCGCTCCGATGTCTTCACCTTaGGTCTCCTCCATGGTTGGG | + |
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Preference number: 4 (lower is better) Translates to: CTRESSQQSCDSCRPHPAPMSSP*VSSMVG Trigger: CCCAACCATGGAGGAGACGCAAGGTGAAGACATCGG...AGCGGGATGGGGACGACATGAATCACAGCTTTGCTGTGAGCTTTCTCTCGTGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000204487.3 |
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| 3UTR CAA 72 bp | AAACCTCTGCCCAAAGAGCCGGCAGTTGCTGCTAAATaGTATTCTTCTCTAGCGGCCACTTGCCCTCCTCCC | + |
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Preference number: 4 (lower is better) Translates to: KPLPKEPAVAAK*YSSLAATCPPP Trigger: GGGAGGAGGGCAAGTGGCCGCTAGAGAAGAATACAATTTAGCAGCAACTGCCGGCTCTTTGGGCAGAGGTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032264.9 |
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| CDS-3UTR GCA 90 bp | TTGTATTCTTCTCTAGCGGCCACTTGCCCTCCTCCCAAACCTCTGATGAAACTGCCAGGTGCTCCCATCTaGTGGGCTTCTGCCTCATTT | + |
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Preference number: 4 (lower is better) Translates to: LYSSLAATCPPPKPLMKLPGAPI*WASASF Trigger: AAATGAGGCAGAAGCCCAGCAGATGGGAGCACCTGG...CAGTTTCATCAGAGGTTTGGGAGGAGGGCAAGTGGCCGCTAGAGAAGAATACAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204487.3 |
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| CDS-3UTR TCA 90 bp | CAAGGTACTTATGGGATGAGGAGCAGGACATGTTCAACCCTGAACTCCAGTTTAAGAACTGGCCAACAGTaGGGTCGGAGGGCACAAGGT | + |
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Preference number: 4 (lower is better) Translates to: QGTYGMRSRTCSTLNSSLRTGQQ*GRRAQG Trigger: ACCTTGTGCCCTCCGACCTCACTGTTGGCCAGTTCT...TAAACTGGAGTTCAGGGTTGAACATGTCCTGCTCCTCATCCCATAAGTACCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032264.9 |
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| CDS-3UTR CCA 90 bp | CTAGCGGCCACTTGCCCTCCTCCCAAACCTCTGATGAAACTGCACGAGAGAAAGAACACAAGTTCTTCCTaGGCTGAGGAAGCAGAGAAA | + |
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Preference number: 4 (lower is better) Translates to: LAATCPPPKPLMKLHERKNTSSS*AEEAEK Trigger: TTTCTCTGCTTCCTCAGCCCAGGAAGAACTTGTGTT...CTTTCTCTCGTGCAGTTTCATCAGAGGTTTGGGAGGAGGGCAAGTGGCCGCTAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204487.3 |
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| CDS-3UTR CAA 90 bp | TTCTTCTCTAGCGGCCACTTGCCCTCCTCCCAAACCTCTGATGAAACTGCACGAGCGTCTCCTCCATGGTaGGGAGCCCTCCCTCTGGTT | + |
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Preference number: 5 (lower is better) Translates to: FFSSGHLPSSQTSDETARASPPW*GALPLV Trigger: AACCAGAGGGAGGGCTCCCAACCATGGAGGAGACGC...TCGTGCAGTTTCATCAGAGGTTTGGGAGGAGGGCAAGTGGCCGCTAGAGAAGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204487.3 |
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| CDS-3UTR CAA 90 bp | CTAGCGGCCACTTGCCCTCCTCCCAAACCTCTGATGAAACTGCACGAGAGAAAGCCCGATGTCTTCACCTaGCGTCTCCTCCATGGTTGG | + |
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Preference number: 5 (lower is better) Translates to: LAATCPPPKPLMKLHERKPDVFT*RLLHGW Trigger: CCAACCATGGAGGAGACGCAAGGTGAAGACATCGGG...CTTTCTCTCGTGCAGTTTCATCAGAGGTTTGGGAGGAGGGCAAGTGGCCGCTAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000204487.3 |
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