RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for FYN (Mus musculus)

Ensembl gene IDs: ENSMUSG00000019843

Ensembl transcript IDs: ENSMUST00000063091.13, ENSMUST00000099967.10, ENSMUST00000126486.8, ENSMUST00000135242.8, ENSMUST00000136659.2, ENSMUST00000146287.8, ENSMUST00000148152.8, ENSMUST00000157009.8

Found 212 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GCCACCGGCTTGCAGGCTGACACCAGTGCTTTGCTGGCAGGGTTCTaGAGTAATCCCCACTCCGGTCCTGTAGCTATGTGGCCTACGCTG +
Preference number: 1 (lower is better)
Translates to: ATGLQADTSALLAGF*SNPHSGPVAMWPTL
Trigger: CAGCGTAGGCCACATAGCTACAGGACCGGAGTGGGGATTACTGCAGAACCCTGCCAGCAAAGCACTGGTGTCAGCCTGCAAGCCGGTGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR CCA 90 bp CTGGCAGGGTTCTGCAGTAATCCCCACTCCGGTCCTGTAGCTATGTaGCCTACGCTGGCCAGTCTCCATGGTAGCACCCACATGGTGTAT +
Preference number: 1 (lower is better)
Translates to: LAGFCSNPHSGPVAM*PTLASLHGSTHMVY
Trigger: ATACACCATGTGGGTGCTACCATGGAGACTGGCCAGCGTAGGCCACATAGCTACAGGACCGGAGTGGGGATTACTGCAGAACCCTGCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR-3UTR CCA 90 bp ATGAGGCCACCGGCTTGCAGGCTGACACCAGTGCTTTGCTGGCAGGGTTCTGCACGGTTCTCGCTGCTCTaGGGCAGCTGGCTACAGAAT +
Preference number: 2 (lower is better)
Translates to: MRPPACRLTPVLCWQGSARFSLL*GSWLQN
Trigger: ATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCG...TGCAGAACCCTGCCAGCAAAGCACTGGTGTCAGCCTGCAAGCCGGTGGCCTCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR-3UTR TCA 90 bp CGCTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGGAACATATGTGAGTCACATGCAATCTaGTCCTGGACGGTTCTCGCT +
Preference number: 2 (lower is better)
Translates to: RWPVSMVAPTWCMYRNICESHAI*SWTVLA
Trigger: AGCGAGAACCGTCCAGGATCAGATTGCATGTGACTC...ACATATGTTCCTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAGCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR-3UTR TCA 90 bp TGGAGCACTCCTGACACGGAGAGTCACTCATTAGCAGTACAGGACAGTAAAACACTAGGCCCTGGGACCTaGAAAAAGTCACATGAACAA +
Preference number: 2 (lower is better)
Translates to: WSTPDTESHSLAVQDSKTLGPGT*KKSHEQ
Trigger: TTGTTCATGTGACTTTTTTCAGGTCCCAGGGCCTAG...TGTTTTACTGTCCTGTACTGCTAATGAGTGACTCTCCGTGTCAGGAGTGCTCCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR-3UTR GCA 90 bp CTTGTGGTAGAACTGGCTGGCTGCTTTTTGCTTAAAATGCTCACTCCTAAGTTTTTGCTGGCAGGGTTCTaGAGTAATCCCCACTCCGGT +
Preference number: 2 (lower is better)
Translates to: LVVELAGCFLLKMLTPKFLLAGF*SNPHSG
Trigger: ACCGGAGTGGGGATTACTGCAGAACCCTGCCAGCAA...AAACTTAGGAGTGAGCATTTTAAGCAAAAAGCAGCCAGCCAGTTCTACCACAAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR-3UTR TCA 90 bp AACCCTTCAGCATTCATATTTATACAGGAAGTTTGTGTGGTCTCCGTCTTGCAGGAGTCACATGCAATCTaGTCCTGGACGGTTCTCGCT +
Preference number: 2 (lower is better)
Translates to: NPSAFIFIQEVCVVSVLQESHAI*SWTVLA
Trigger: AGCGAGAACCGTCCAGGATCAGATTGCATGTGACTC...CTGCAAGACGGAGACCACACAAACTTCCTGTATAAATATGAATGCTGAAGGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR-3UTR GCA 90 bp AACTGGCTGGCTGCTTTTTGCTTAAAATGCTCACTCCTAAGTTTCAAGAACGAATTGCTGGCAGGGTTCTaGAGTAATCCCCACTCCGGT +
Preference number: 2 (lower is better)
Translates to: NWLAAFCLKCSLLSFKNELLAGF*SNPHSG
Trigger: ACCGGAGTGGGGATTACTGCAGAACCCTGCCAGCAA...TTCGTTCTTGAAACTTAGGAGTGAGCATTTTAAGCAAAAAGCAGCCAGCCAGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR-3UTR CCA 90 bp CTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGGAACATATGTTAAAGCACTGGGATTGTTaGCACAGGAGCAGCTATTTA +
Preference number: 2 (lower is better)
Translates to: LASLHGSTHMVYVQEHMLKHWDC*HRSSYL
Trigger: TAAATAGCTGCTCCTGTGCCAACAATCCCAGTGCTT...TAACATATGTTCCTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR CAA 90 bp GGTCTCCGTCTTGCAGCTCTTGTGGTAGAACTGGCTGGCTGCTTTTaGCTTAAAATGCTCACTCCTAAGTTTCAAGAACGAATCACAGTT +
Preference number: 2 (lower is better)
Translates to: GLRLAALVVELAGCF*LKMLTPKFQERITV
Trigger: AACTGTGATTCGTTCTTGAAACTTAGGAGTGAGCATTTTAAGCAAAAAGCAGCCAGCCAGTTCTACCACAAGAGCTGCAAGACGGAGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR-3UTR GCA 90 bp TGGAGCACTCCTGACACGGAGAGTCACTCATTAGCAGTACAGGACAGTAAAACAGTAGAACTGGCTGGCTaGTTTTTGCTTAAAATGCTC +
Preference number: 2 (lower is better)
Translates to: WSTPDTESHSLAVQDSKTVELAG*FLLKML
Trigger: GAGCATTTTAAGCAAAAAGCAGCCAGCCAGTTCTAC...TGTTTTACTGTCCTGTACTGCTAATGAGTGACTCTCCGTGTCAGGAGTGCTCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR-3UTR CCA 90 bp AACCCTTCAGCATTCATATTTATACAGGAAGTTTGTGTGGTCTCCGTCTTGCAGAGCTGGCTACAGAATTaGAAGCTAATGGGGAGGGGT +
Preference number: 2 (lower is better)
Translates to: NPSAFIFIQEVCVVSVLQSWLQN*KLMGRG
Trigger: ACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT...CTGCAAGACGGAGACCACACAAACTTCCTGTATAAATATGAATGCTGAAGGGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR-3UTR CCA 90 bp TTAGTAGGTTGCCATGACTACAATGCTATGGGTTTAGACCATTTAAATGTGGTTAGCTGGCTACAGAATTaGAAGCTAATGGGGAGGGGT +
Preference number: 2 (lower is better)
Translates to: LVGCHDYNAMGLDHLNVVSWLQN*KLMGRG
Trigger: ACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT...AACCACATTTAAATGGTCTAAACCCATAGCATTGTAGTCATGGCAACCTACTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR-3UTR TCA 90 bp CTTGTGGTAGAACTGGCTGGCTGCTTTTTGCTTAAAATGCTCACTCCTAAGTTTATGCATTTCCAAGTCTaGGAAATAACACGCTTCTGT +
Preference number: 2 (lower is better)
Translates to: LVVELAGCFLLKMLTPKFMHFQV*EITRFC
Trigger: ACAGAAGCGTGTTATTTCTCAGACTTGGAAATGCAT...AAACTTAGGAGTGAGCATTTTAAGCAAAAAGCAGCCAGCCAGTTCTACCACAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR-3UTR TCA 90 bp AACCCTTCAGCATTCATATTTATACAGGAAGTTTGTGTGGTCTCCGTCTTGCAGATGCATTTCCAAGTCTaGGAAATAACACGCTTCTGT +
Preference number: 2 (lower is better)
Translates to: NPSAFIFIQEVCVVSVLQMHFQV*EITRFC
Trigger: ACAGAAGCGTGTTATTTCTCAGACTTGGAAATGCAT...CTGCAAGACGGAGACCACACAAACTTCCTGTATAAATATGAATGCTGAAGGGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR-3UTR GCA 90 bp AACCCTTCAGCATTCATATTTATACAGGAAGTTTGTGTGGTCTCCGTCTTGCAGGCTTTTTGCTTAAAATaGTCACTCCTAAGTTTCAAG +
Preference number: 2 (lower is better)
Translates to: NPSAFIFIQEVCVVSVLQAFCLK*SLLSFK
Trigger: CTTGAAACTTAGGAGTGAGCATTTTAAGCAAAAAGC...CTGCAAGACGGAGACCACACAAACTTCCTGTATAAATATGAATGCTGAAGGGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR CCA 72 bp AGGCCACCGGCTTGCAGGCTGACACCAGTGCTTTGCTaGCAGGGTTCTGCAGTAATCCCCACTCCGGTCCTG +
Preference number: 3 (lower is better)
Translates to: RPPACRLTPVLC*QGSAVIPTPVL
Trigger: CAGGACCGGAGTGGGGATTACTGCAGAACCCTGCCAGCAAAGCACTGGTGTCAGCCTGCAAGCCGGTGGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR GCA 72 bp ATGAGGCCACCGGCTTGCAGGCTGACACCAGTGCTTTaGTGGCAGGGTTCTGCAGTAATCCCCACTCCGGTC +
Preference number: 3 (lower is better)
Translates to: MRPPACRLTPVL*WQGSAVIPTPV
Trigger: GACCGGAGTGGGGATTACTGCAGAACCCTGCCAGCAAAGCACTGGTGTCAGCCTGCAAGCCGGTGGCCTCAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR GCA 72 bp TTGCAGGCTGACACCAGTGCTTTGCTGGCAGGGTTCTaGAGTAATCCCCACTCCGGTCCTGTAGCTATGTGG +
Preference number: 3 (lower is better)
Translates to: LQADTSALLAGF*SNPHSGPVAMW
Trigger: CCACATAGCTACAGGACCGGAGTGGGGATTACTGCAGAACCCTGCCAGCAAAGCACTGGTGTCAGCCTGCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR-3UTR CAA 90 bp CGCTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGGAACATATGTCAGCTGGCTACAGAATaGGAAGCTAATGGGGAGGGG +
Preference number: 3 (lower is better)
Translates to: RWPVSMVAPTWCMYRNICQLATE*EANGEG
Trigger: CCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCTG...ACATATGTTCCTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAGCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR-3UTR CAA 90 bp AACTGGCTGGCTGCTTTTTGCTTAAAATGCTCACTCCTAAGTTTCAAGAACGAACAGCTGGCTACAGAATaGGAAGCTAATGGGGAGGGG +
Preference number: 3 (lower is better)
Translates to: NWLAAFCLKCSLLSFKNEQLATE*EANGEG
Trigger: CCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCTG...TTCGTTCTTGAAACTTAGGAGTGAGCATTTTAAGCAAAAAGCAGCCAGCCAGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR TCA 72 bp TGTAAAGTAGTGCATAGTTATTCACTGGAGCACTCCTaGCACGGAGAGTCACTCATTAGCAGTACAGGACAG +
Preference number: 3 (lower is better)
Translates to: CKVVHSYSLEHS*HGESLISSTGQ
Trigger: CTGTCCTGTACTGCTAATGAGTGACTCTCCGTGTCAGGAGTGCTCCAGTGAATAACTATGCACTACTTTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR GCA 72 bp CTCCGTCTTGCAGCTCTTGTGGTAGAACTGGCTGGCTaGTTTTTGCTTAAAATGCTCACTCCTAAGTTTCAA +
Preference number: 3 (lower is better)
Translates to: LRLAALVVELAG*FLLKMLTPKFQ
Trigger: TTGAAACTTAGGAGTGAGCATTTTAAGCAAAAAGCAGCCAGCCAGTTCTACCACAAGAGCTGCAAGACGGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR-3UTR CAA 90 bp CTTGTGGTAGAACTGGCTGGCTGCTTTTTGCTTAAAATGCTCACTCCTAAGTTTAAAGCACTGGGATTGTaGGCACAGGAGCAGCTATTT +
Preference number: 3 (lower is better)
Translates to: LVVELAGCFLLKMLTPKFKALGL*AQEQLF
Trigger: AAATAGCTGCTCCTGTGCCAACAATCCCAGTGCTTT...AAACTTAGGAGTGAGCATTTTAAGCAAAAAGCAGCCAGCCAGTTCTACCACAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
3UTR-3UTR CAA 90 bp AACTGGCTGGCTGCTTTTTGCTTAAAATGCTCACTCCTAAGTTTCAAGAACGAAAAAGCACTGGGATTGTaGGCACAGGAGCAGCTATTT +
Preference number: 3 (lower is better)
Translates to: NWLAAFCLKCSLLSFKNEKALGL*AQEQLF
Trigger: AAATAGCTGCTCCTGTGCCAACAATCCCAGTGCTTT...TTCGTTCTTGAAACTTAGGAGTGAGCATTTTAAGCAAAAAGCAGCCAGCCAGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR GCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACGAGGGGTGGGGTCTGTaGCATAGCGGTACCCAGAGC +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYEGWGL*HSGTQS
Trigger: GCTCTGGGTACCGCTATGGCACAGACCCCACCCCTC...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGGTCACGCCGAAGCTaGGGTAGTGCTGAGGGGTGG +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYRSRRS*GSAEGW
Trigger: CCACCCCTCAGCACTACCCCAGCTTCGGCGTGACCT...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAAGACGGTGAGTCCCTaGCCCCCAGCTGCGTGGAAG +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYKTVSP*PPAAWK
Trigger: CTTCCACGCAGCTGGGGGCCAGGGACTCACCGTCTT...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR TCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACCGTAGGGTCCCAGTGTaGGAGGAGGAGTTCACACCC +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYRRVPV*EEEFTP
Trigger: GGGTGTGAACTCCTCCTCTCACACTGGGACCCTACG...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR TCA 90 bp ATGAGGCCACCGGCTTGCAGGCTGACACCAGTGCTTTGCTGGCAGGGTTCTGCATCCAGCAGTGGATCATaGGCTCGTGCAGGGAGATCG +
Preference number: 4 (lower is better)
Translates to: MRPPACRLTPVLCWQGSASSSGS*ARAGRS
Trigger: CGATCTCCCTGCACGAGCTCATGATCCACTGCTGGA...TGCAGAACCCTGCCAGCAAAGCACTGGTGTCAGCCTGCAAGCCGGTGGCCTCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR GCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGAGAGGGGTGGGGTCTGTaGCATAGCGGTACCCAGAGC +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGREGWGL*HSGTQS
Trigger: GCTCTGGGTACCGCTATGGCACAGACCCCACCCCTC...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR GCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACCTGTCCCTCCTCTCGTaGGTAGGGTCCCAGTGTGAG +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYLSLLS*VGSQCE
Trigger: CTCACACTGGGACCCTACGCACGAGAGGAGGGACAG...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGACGGTACCCAGAGCTCTaGTTCAGGCTGCCGTCCCTC +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRRYPEL*FRLPSL
Trigger: GAGGGACGGCAGCCTGAACCAGAGCTCTGGGTACCG...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGAAGGTCACGCCGAAGCTaGGGTAGTGCTGAGGGGTGG +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRRSRRS*GSAEGW
Trigger: CCACCCCTCAGCACTACCCCAGCTTCGGCGTGACCT...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGAAAGACGGTGAGTCCCTaGCCCCCAGCTGCGTGGAAG +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRKTVSP*PPAAWK
Trigger: CTTCCACGCAGCTGGGGGCCAGGGACTCACCGTCTT...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACGATCGGGCAGTCCTGTaGGCAGGGCATCCTATAGCC +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYDRAVL*AGHPIA
Trigger: GGCTATAGGATGCCCTGCCCACAGGACTGCCCGATC...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
3UTR CAA 72 bp AATGAGGCCACCGGCTTGCAGGCTGACACCAGTGCTTaGCTGGCAGGGTTCTGCAGTAATCCCCACTCCGGT +
Preference number: 4 (lower is better)
Translates to: NEATGLQADTSA*LAGFCSNPHSG
Trigger: ACCGGAGTGGGGATTACTGCAGAACCCTGCCAGCAAAGCACTGGTGTCAGCCTGCAAGCCGGTGGCCTCATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR TCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGACGTAGGGTCCCAGTGTaGGAGGAGGAGTTCACACCC +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRRRVPV*EEEFTP
Trigger: GGGTGTGAACTCCTCCTCTCACACTGGGACCCTACG...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR TCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACTCCAGCAGTGGATCATaGGCTCGTGCAGGGAGATCG +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYSSSGS*ARAGRS
Trigger: CGATCTCCCTGCACGAGCTCATGATCCACTGCTGGA...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR GCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTGAGGGGTGGGGTCTGTaGCATAGCGGTACCCAGAGC +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRIEGWGL*HSGTQS
Trigger: GCTCTGGGTACCGCTATGGCACAGACCCCACCCCTC...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR GCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACTGGATCATGAGCTCGTaGAGGGAGATCGGGCAGTCC +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYWIMSS*REIGQS
Trigger: GGACTGCCCGATCTCCCTGCACGAGCTCATGATCCA...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTCGGTACCCAGAGCTCTaGTTCAGGCTGCCGTCCCTC +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRIRYPEL*FRLPSL
Trigger: GAGGGACGGCAGCCTGAACCAGAGCTCTGGGTACCG...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp ATGTGGCCTACGCTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGAAGACGGTGAGTCCCTaGCCCCCAGCTGCGTGGAAG +
Preference number: 4 (lower is better)
Translates to: MWPTLASLHGSTHMVYVQKTVSP*PPAAWK
Trigger: CTTCCACGCAGCTGGGGGCCAGGGACTCACCGTCTT...CTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAGCGTAGGCCACAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CCA 90 bp ATGAGGCCACCGGCTTGCAGGCTGACACCAGTGCTTTGCTGGCAGGGTTCTGCAGTGAGTAGGCACCTTTaGTGGTTTCGCTCTCGCGGA +
Preference number: 4 (lower is better)
Translates to: MRPPACRLTPVLCWQGSAVSRHL*WFRSRG
Trigger: TCCGCGAGAGCGAAACCACCAAAGGTGCCTACTCAC...TGCAGAACCCTGCCAGCAAAGCACTGGTGTCAGCCTGCAAGCCGGTGGCCTCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGAGATCGGGCAGTCCTGTaGGCAGGGCATCCTATAGCC +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRDRAVL*AGHPIA
Trigger: GGCTATAGGATGCCCTGCCCACAGGACTGCCCGATC...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR TCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGATCCAGCAGTGGATCATaGGCTCGTGCAGGGAGATCG +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRSSSGS*ARAGRS
Trigger: CGATCTCCCTGCACGAGCTCATGATCCACTGCTGGA...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR GCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACTCCCTGGCCCCCAGCTaGGTGGAAGTTGTTGTAGTT +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYSLAPS*VEVVVV
Trigger: AACTACAACAACTTCCACGCAGCTGGGGGCCAGGGA...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR GCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTCTGTCCCTCCTCTCGTaGGTAGGGTCCCAGTGTGAG +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRILSLLS*VGSQCE
Trigger: CTCACACTGGGACCCTACGCACGAGAGGAGGGACAG...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR GCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACCCTCCCGGTTGTTCATaGCTGGGTATGGCACTCTTC +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYPPGCS*LGMALF
Trigger: GAAGAGTGCCATACCCAGGCATGAACAACCGGGAGG...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR GCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGATGGATCATGAGCTCGTaGAGGGAGATCGGGCAGTCC +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRWIMSS*REIGQS
Trigger: GGACTGCCCGATCTCCCTGCACGAGCTCATGATCCA...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTGGTAGTGCTGAGGGGTaGGGTCTGTGCCATAGCGGT +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRIGSAEG*GLCHSG
Trigger: ACCGCTATGGCACAGACCCCACCCCTCAGCACTACC...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACGTGAGTAGGCACCTTTaGTGGTTTCGCTCTCGCGGA +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYVSRHL*WFRSRG
Trigger: TCCGCGAGAGCGAAACCACCAAAGGTGCCTACTCAC...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR GCA 90 bp CGCTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGGAACATATGTGAGGGGTGGGGTCTGTaGCATAGCGGTACCCAGAGC +
Preference number: 4 (lower is better)
Translates to: RWPVSMVAPTWCMYRNICEGWGL*HSGTQS
Trigger: GCTCTGGGTACCGCTATGGCACAGACCCCACCCCTC...ACATATGTTCCTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR GCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGATCCCTGGCCCCCAGCTaGGTGGAAGTTGTTGTAGTT +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRSLAPS*VEVVVV
Trigger: AACTACAACAACTTCCACGCAGCTGGGGGCCAGGGA...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR GCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGACCTCCCGGTTGTTCATaGCTGGGTATGGCACTCTTC +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRPPGCS*LGMALF
Trigger: GAAGAGTGCCATACCCAGGCATGAACAACCGGGAGG...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR GCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTTGGATCATGAGCTCGTaGAGGGAGATCGGGCAGTCC +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRIWIMSS*REIGQS
Trigger: GGACTGCCCGATCTCCCTGCACGAGCTCATGATCCA...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp CGCTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGGAACATATGTAGGTCACGCCGAAGCTaGGGTAGTGCTGAGGGGTGG +
Preference number: 4 (lower is better)
Translates to: RWPVSMVAPTWCMYRNICRSRRS*GSAEGW
Trigger: CCACCCCTCAGCACTACCCCAGCTTCGGCGTGACCT...ACATATGTTCCTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACACTCTTCTGCCTGGATaGAGTCAACTGGAGCCACGT +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYTLLPG*SQLEPR
Trigger: ACGTGGCTCCAGTTGACTCCATCCAGGCAGAAGAGT...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACTACCACTCTTCTGCCTaGATGGAGTCAACTGGAGCC +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYYHSSA*MESTGA
Trigger: GGCTCCAGTTGACTCCATCCAGGCAGAAGAGTGGTA...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGAGTGAGTAGGCACCTTTaGTGGTTTCGCTCTCGCGGA +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRVSRHL*WFRSRG
Trigger: TCCGCGAGAGCGAAACCACCAAAGGTGCCTACTCAC...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACCGGAGACATGGTGCCTaGCTTAAGGGTCTTTATGGC +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYRRHGA*LKGLYG
Trigger: GCCATAAAGACCCTTAAGCCAGGCACCATGTCTCCG...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp ATGAGGCCACCGGCTTGCAGGCTGACACCAGTGCTTTGCTGGCAGGGTTCTGCATCCTTTTTCCAGCAGTaGATCATGAGCTCGTGCAGG +
Preference number: 4 (lower is better)
Translates to: MRPPACRLTPVLCWQGSASFFQQ*IMSSCR
Trigger: CCTGCACGAGCTCATGATCCACTGCTGGAAAAAGGA...TGCAGAACCCTGCCAGCAAAGCACTGGTGTCAGCCTGCAAGCCGGTGGCCTCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR TCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACACTGGGCCCGCGTTGTaGTATAGTATCCACCATTGT +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYTGPAL*YSIHHC
Trigger: ACAATGGTGGATACTATATCACAACGCGGGCCCAGT...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR TCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACTGCTGTACCAGTTGCTaGAGTGTTTCAAACTGGGCC +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYCCTSC*SVSNWA
Trigger: GGCCCAGTTTGAAACACTTCAGCAACTGGTACAGCA...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR GCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTCCTCCCGGTTGTTCATaGCTGGGTATGGCACTCTTC +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRIPPGCS*LGMALF
Trigger: GAAGAGTGCCATACCCAGGCATGAACAACCGGGAGG...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGACTGGATGGAGTCAACTaGAGCCACGTAATTGCTGGG +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRLDGVN*SHVIAG
Trigger: CCCAGCAATTACGTGGCTCCAGTTGACTCCATCCAG...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGAACTCTTCTGCCTGGATaGAGTCAACTGGAGCCACGT +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRTLLPG*SQLEPR
Trigger: ACGTGGCTCCAGTTGACTCCATCCAGGCAGAAGAGT...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGATACCACTCTTCTGCCTaGATGGAGTCAACTGGAGCC +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRYHSSA*MESTGA
Trigger: GGCTCCAGTTGACTCCATCCAGGCAGAAGAGTGGTA...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTGTGAGTAGGCACCTTTaGTGGTTTCGCTCTCGCGGA +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRIVSRHL*WFRSRG
Trigger: TCCGCGAGAGCGAAACCACCAAAGGTGCCTACTCAC...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGACGGAGACATGGTGCCTaGCTTAAGGGTCTTTATGGC +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRRRHGA*LKGLYG
Trigger: GCCATAAAGACCCTTAAGCCAGGCACCATGTCTCCG...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp ATGAGGCCACCGGCTTGCAGGCTGACACCAGTGCTTTGCTGGCAGGGTTCTGCACATGTCCACAAGGTTTaGCAACTTCAGAGCTCTTCC +
Preference number: 4 (lower is better)
Translates to: MRPPACRLTPVLCWQGSAHVHKV*QLQSSS
Trigger: GGAAGAGCTCTGAAGTTGCCAAACCTTGTGGACATG...TGCAGAACCCTGCCAGCAAAGCACTGGTGTCAGCCTGCAAGCCGGTGGCCTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACGTTCATGCCTGGGTATaGCACTCTTCCTTTGGTGAC +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYVHAWV*HSSFGD
Trigger: GTCACCAAAGGAAGAGTGCCATACCCAGGCATGAAC...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACCCGGTTGTTCATGCCTaGGTATGGCACTCTTCCTTT +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYPVVHA*VWHSSF
Trigger: AAAGGAAGAGTGCCATACCCAGGCATGAACAACCGG...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp CGCTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGGAACATATGTGATCGGGCAGTCCTGTaGGCAGGGCATCCTATAGCC +
Preference number: 4 (lower is better)
Translates to: RWPVSMVAPTWCMYRNICDRAVL*AGHPIA
Trigger: GGCTATAGGATGCCCTGCCCACAGGACTGCCCGATC...ACATATGTTCCTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACTCCTTTTTCCAGCAGTaGATCATGAGCTCGTGCAGG +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYSFFQQ*IMSSCR
Trigger: CCTGCACGAGCTCATGATCCACTGCTGGAAAAAGGA...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR TCA 90 bp ATGAGGCCACCGGCTTGCAGGCTGACACCAGTGCTTTGCTGGCAGGGTTCTGCAACCATCAGCTTTCTCTaGGTAATGCTGTACCAGTTG +
Preference number: 4 (lower is better)
Translates to: MRPPACRLTPVLCWQGSATISFL*VMLYQL
Trigger: CAACTGGTACAGCATTACTCAGAGAAAGCTGATGGT...TGCAGAACCCTGCCAGCAAAGCACTGGTGTCAGCCTGCAAGCCGGTGGCCTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063091.13
CDS-3UTR GCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACGTCATCTTCCGTCCGTaGTTCATAGTCATAAAGCGC +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYVIFRP*FIVIKR
Trigger: GCGCTTTATGACTATGAAGCACGGACGGAAGATGAC...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp TGGAGCACTCCTGACACGGAGAGTCACTCATTAGCAGTACAGGACAGTAAAACACGGTACCCAGAGCTCTaGTTCAGGCTGCCGTCCCTC +
Preference number: 4 (lower is better)
Translates to: WSTPDTESHSLAVQDSKTRYPEL*FRLPSL
Trigger: GAGGGACGGCAGCCTGAACCAGAGCTCTGGGTACCG...TGTTTTACTGTCCTGTACTGCTAATGAGTGACTCTCCGTGTCAGGAGTGCTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACGAGCCACGTAATTGCTaGGAATGTAACCAGTTTCCC +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYEPRNC*ECNQFP
Trigger: GGGAAACTGGTTACATTCCCAGCAATTACGTGGCTC...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTCTGGATGGAGTCAACTaGAGCCACGTAATTGCTGGG +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRILDGVN*SHVIAG
Trigger: CCCAGCAATTACGTGGCTCCAGTTGACTCCATCCAG...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTACTCTTCTGCCTGGATaGAGTCAACTGGAGCCACGT +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRITLLPG*SQLEPR
Trigger: ACGTGGCTCCAGTTGACTCCATCCAGGCAGAAGAGT...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTTACCACTCTTCTGCCTaGATGGAGTCAACTGGAGCC +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRIYHSSA*MESTGA
Trigger: GGCTCCAGTTGACTCCATCCAGGCAGAAGAGTGGTA...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTCGGAGACATGGTGCCTaGCTTAAGGGTCTTTATGGC +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRIRRHGA*LKGLYG
Trigger: GCCATAAAGACCCTTAAGCCAGGCACCATGTCTCCG...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACCATGTCCACAAGGTTTaGCAACTTCAGAGCTCTTCC +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYHVHKV*QLQSSS
Trigger: GGAAGAGCTCTGAAGTTGCCAAACCTTGTGGACATG...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGACCGGTTGTTCATGCCTaGGTATGGCACTCTTCCTTT +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRPVVHA*VWHSSF
Trigger: AAAGGAAGAGTGCCATACCCAGGCATGAACAACCGG...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGATCCTTTTTCCAGCAGTaGATCATGAGCTCGTGCAGG +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRSFFQQ*IMSSCR
Trigger: CCTGCACGAGCTCATGATCCACTGCTGGAAAAAGGA...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR TCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTACTGGGCCCGCGTTGTaGTATAGTATCCACCATTGT +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRITGPAL*YSIHHC
Trigger: ACAATGGTGGATACTATATCACAACGCGGGCCCAGT...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR TCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGATCCATTCCAGGTACCTaGGTAATGCTGTACCAGTTG +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRSIPGT*VMLYQL
Trigger: CAACTGGTACAGCATTACTCAGGTACCTGGAATGGA...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000136659.2
CDS-3UTR GCA 90 bp CGCTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGGAACATATGTTCCCTGGCCCCCAGCTaGGTGGAAGTTGTTGTAGTT +
Preference number: 4 (lower is better)
Translates to: RWPVSMVAPTWCMYRNICSLAPS*VEVVVV
Trigger: AACTACAACAACTTCCACGCAGCTGGGGGCCAGGGA...ACATATGTTCCTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAGCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR GCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGAGTCATCTTCCGTCCGTaGTTCATAGTCATAAAGCGC +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRVIFRP*FIVIKR
Trigger: GCGCTTTATGACTATGAAGCACGGACGGAAGATGAC...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR GCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACGTCTCTCAGCATCTTTaGGGCCAAGTTTTCCAAAGT +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYVSQHL*GQVFQS
Trigger: ACTTTGGAAAACTTGGCCGCAAAGATGCTGAGAGAC...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGAGAGCCACGTAATTGCTaGGAATGTAACCAGTTTCCC +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGREPRNC*ECNQFP
Trigger: GGGAAACTGGTTACATTCCCAGCAATTACGTGGCTC...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTGTTCATGCCTGGGTATaGCACTCTTCCTTTGGTGAC +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRIVHAWV*HSSFGD
Trigger: GTCACCAAAGGAAGAGTGCCATACCCAGGCATGAAC...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTCCGGTTGTTCATGCCTaGGTATGGCACTCTTCCTTT +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRIPVVHA*VWHSSF
Trigger: AAAGGAAGAGTGCCATACCCAGGCATGAACAACCGG...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp TGGAGCACTCCTGACACGGAGAGTCACTCATTAGCAGTACAGGACAGTAAAACAGATCGGGCAGTCCTGTaGGCAGGGCATCCTATAGCC +
Preference number: 4 (lower is better)
Translates to: WSTPDTESHSLAVQDSKTDRAVL*AGHPIA
Trigger: GGCTATAGGATGCCCTGCCCACAGGACTGCCCGATC...TGTTTTACTGTCCTGTACTGCTAATGAGTGACTCTCCGTGTCAGGAGTGCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTTCCTTTTTCCAGCAGTaGATCATGAGCTCGTGCAGG +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRISFFQQ*IMSSCR
Trigger: CCTGCACGAGCTCATGATCCACTGCTGGAAAAAGGA...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR TCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGAACCATCAGCTTTCTCTaGGTAATGCTGTACCAGTTG +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRTISFL*VMLYQL
Trigger: CAACTGGTACAGCATTACTCAGAGAAAGCTGATGGT...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000063091.13
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000146287.8
CDS-3UTR TCA 90 bp CTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGGAACATATGTTATCCAGCAGTGGATCATaGGCTCGTGCAGGGAGATCG +
Preference number: 4 (lower is better)
Translates to: LASLHGSTHMVYVQEHMLSSSGS*ARAGRS
Trigger: CGATCTCCCTGCACGAGCTCATGATCCACTGCTGGA...TAACATATGTTCCTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR TCA 90 bp ATGTGGCCTACGCTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGCATTTCCCAGTCTCTTaGTCAACTGCAGGGATTCTC +
Preference number: 4 (lower is better)
Translates to: MWPTLASLHGSTHMVYVQHFPVS*STAGIL
Trigger: GAGAATCCCTGCAGTTGATCAAGAGACTGGGAAATG...CTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAGCGTAGGCCACAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099967.10
CDS-3UTR GCA 90 bp ATGAGGCCACCGGCTTGCAGGCTGACACCAGTGCTTTGCTGGCAGGGTTCTGCACTCTGTCAGTTTCGCTaGTTCTTTATCCTTACATTG +
Preference number: 4 (lower is better)
Translates to: MRPPACRLTPVLCWQGSALCQFR*FFILTL
Trigger: CAATGTAAGGATAAAGAAGCAGCGAAACTGACAGAG...TGCAGAACCCTGCCAGCAAAGCACTGGTGTCAGCCTGCAAGCCGGTGGCCTCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR GCA 90 bp CTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGGAACATATGTTAAGCTCTGGTTCAGGCTaGCGTCCCTCTCCTCTGTCA +
Preference number: 4 (lower is better)
Translates to: LASLHGSTHMVYVQEHMLSSGSG*RPSPLS
Trigger: TGACAGAGGAGAGGGACGGCAGCCTGAACCAGAGCT...TAACATATGTTCCTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR GCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAAACAACGAGTCACGTaGAACTTCCCAAGCATCTTT +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYKQRVT*NFPSIF
Trigger: AAAGATGCTTGGGAAGTTGCACGTGACTCGTTGTTT...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063091.13
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000146287.8
CDS-3UTR GCA 90 bp CTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGGAACATATGTTATGGATCATGAGCTCGTaGAGGGAGATCGGGCAGTCC +
Preference number: 4 (lower is better)
Translates to: LASLHGSTHMVYVQEHMLWIMSS*REIGQS
Trigger: GGACTGCCCGATCTCCCTGCACGAGCTCATGATCCA...TAACATATGTTCCTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTGAGCCACGTAATTGCTaGGAATGTAACCAGTTTCCC +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRIEPRNC*ECNQFP
Trigger: GGGAAACTGGTTACATTCCCAGCAATTACGTGGCTC...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGAAAGAAAGGTACCTCTTaGGTTTCCAAAGGACAGGAG +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRKKGTS*VSKGQE
Trigger: CTCCTGTCCTTTGGAAACCCAAGAGGTACCTTTCTT...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTCATGTCCACAAGGTTTaGCAACTTCAGAGCTCTTCC +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRIHVHKV*QLQSSS
Trigger: GGAAGAGCTCTGAAGTTGCCAAACCTTGTGGACATG...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR TCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTACCATCAGCTTTCTCTaGGTAATGCTGTACCAGTTG +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRITISFL*VMLYQL
Trigger: CAACTGGTACAGCATTACTCAGAGAAAGCTGATGGT...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063091.13
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000146287.8
CDS-3UTR TCA 90 bp TGGAGCACTCCTGACACGGAGAGTCACTCATTAGCAGTACAGGACAGTAAAACACTTGGCATCCCTTTGTaGCAGGGAACTACTAGGCGG +
Preference number: 4 (lower is better)
Translates to: WSTPDTESHSLAVQDSKTLGIPL*QGTTRR
Trigger: CCGCCTAGTAGTTCCCTGTCACAAAGGGATGCCAAG...TGTTTTACTGTCCTGTACTGCTAATGAGTGACTCTCCGTGTCAGGAGTGCTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099967.10
CDS-3UTR GCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACCTCTGTCAGTTTCGCTaGTTCTTTATCCTTACATTG +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYLCQFR*FFILTL
Trigger: CAATGTAAGGATAAAGAAGCAGCGAAACTGACAGAG...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR GCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTGTCTCTCAGCATCTTTaGGGCCAAGTTTTCCAAAGT +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRIVSQHL*GQVFQS
Trigger: ACTTTGGAAAACTTGGCCGCAAAGATGCTGAGAGAC...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR GCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGAAAACAACGAGTCACGTaGAACTTCCCAAGCATCTTT +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRKQRVT*NFPSIF
Trigger: AAAGATGCTTGGGAAGTTGCACGTGACTCGTTGTTT...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000063091.13
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000146287.8
CDS-3UTR GCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACTGTGGATATAATTCATaGGCTCGATGTAAGCCATTC +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYCGYNS*ARCKPF
Trigger: GAATGGCTTACATCGAGCGCATGAATTATATCCACA...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR GCA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACCAAAGTCAGCAATCTTaGAAATTAGTCCATTCCCCA +
Preference number: 4 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYQSQQS*KLVHSP
Trigger: TGGGGAATGGACTAATTTGCAAGATTGCTGACTTTG...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp AACCCTTCAGCATTCATATTTATACAGGAAGTTTGTGTGGTCTCCGTCTTGCAGAGGTCACGCCGAAGCTaGGGTAGTGCTGAGGGGTGG +
Preference number: 4 (lower is better)
Translates to: NPSAFIFIQEVCVVSVLQRSRRS*GSAEGW
Trigger: CCACCCCTCAGCACTACCCCAGCTTCGGCGTGACCT...CTGCAAGACGGAGACCACACAAACTTCCTGTATAAATATGAATGCTGAAGGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTAAGAAAGGTACCTCTTaGGTTTCCAAAGGACAGGAG +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRIKKGTS*VSKGQE
Trigger: CTCCTGTCCTTTGGAAACCCAAGAGGTACCTTTCTT...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp CGCTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGGAACATATGTGTTCATGCCTGGGTATaGCACTCTTCCTTTGGTGAC +
Preference number: 4 (lower is better)
Translates to: RWPVSMVAPTWCMYRNICVHAWV*HSSFGD
Trigger: GTCACCAAAGGAAGAGTGCCATACCCAGGCATGAAC...ACATATGTTCCTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR TCA 90 bp AACCCTTCAGCATTCATATTTATACAGGAAGTTTGTGTGGTCTCCGTCTTGCAGCGTAGGGTCCCAGTGTaGGAGGAGGAGTTCACACCC +
Preference number: 4 (lower is better)
Translates to: NPSAFIFIQEVCVVSVLQRRVPV*EEEFTP
Trigger: GGGTGTGAACTCCTCCTCTCACACTGGGACCCTACG...CTGCAAGACGGAGACCACACAAACTTCCTGTATAAATATGAATGCTGAAGGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR TCA 90 bp CTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGGAACATATGTTAACCTGCGGCTCTCTCTaGGTAATGCTGTACCAGTTG +
Preference number: 4 (lower is better)
Translates to: LASLHGSTHMVYVQEHMLTCGSL*VMLYQL
Trigger: CAACTGGTACAGCATTACTCAGAGAGAGCCGCAGGT...TAACATATGTTCCTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099967.10
CDS-3UTR GCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGACTCTGTCAGTTTCGCTaGTTCTTTATCCTTACATTG +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRLCQFR*FFILTL
Trigger: CAATGTAAGGATAAAGAAGCAGCGAAACTGACAGAG...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR GCA 90 bp AACCCTTCAGCATTCATATTTATACAGGAAGTTTGTGTGGTCTCCGTCTTGCAGCTGTCCCTCCTCTCGTaGGTAGGGTCCCAGTGTGAG +
Preference number: 4 (lower is better)
Translates to: NPSAFIFIQEVCVVSVLQLSLLS*VGSQCE
Trigger: CTCACACTGGGACCCTACGCACGAGAGGAGGGACAG...CTGCAAGACGGAGACCACACAAACTTCCTGTATAAATATGAATGCTGAAGGGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR GCA 90 bp CGCTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGGAACATATGTGTCATCTTCCGTCCGTaGTTCATAGTCATAAAGCGC +
Preference number: 4 (lower is better)
Translates to: RWPVSMVAPTWCMYRNICVIFRP*FIVIKR
Trigger: GCGCTTTATGACTATGAAGCACGGACGGAAGATGAC...ACATATGTTCCTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR GCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGATGTGGATATAATTCATaGGCTCGATGTAAGCCATTC +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRCGYNS*ARCKPF
Trigger: GAATGGCTTACATCGAGCGCATGAATTATATCCACA...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR GCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGACAAAGTCAGCAATCTTaGAAATTAGTCCATTCCCCA +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRQSQQS*KLVHSP
Trigger: TGGGGAATGGACTAATTTGCAAGATTGCTGACTTTG...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CCA 90 bp CTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGGAACATATGTTACTGGATGGAGTCAACTaGAGCCACGTAATTGCTGGG +
Preference number: 4 (lower is better)
Translates to: LASLHGSTHMVYVQEHMLLDGVN*SHVIAG
Trigger: CCCAGCAATTACGTGGCTCCAGTTGACTCCATCCAG...TAACATATGTTCCTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CCA 90 bp TGGAGCACTCCTGACACGGAGAGTCACTCATTAGCAGTACAGGACAGTAAAACACAGATCGGTAAGCCTTaGCATCCCTTTGTGACAGGG +
Preference number: 4 (lower is better)
Translates to: WSTPDTESHSLAVQDSKTQIGKP*HPFVTG
Trigger: CCCTGTCACAAAGGGATGCCAAGGCTTACCGATCTG...TGTTTTACTGTCCTGTACTGCTAATGAGTGACTCTCCGTGTCAGGAGTGCTCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099967.10
CDS-3UTR TCA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGAGGATTTTATAATGTTTaGCGTGGTCCCCTTTCATAT +
Preference number: 4 (lower is better)
Translates to: SWLQNWKLMGRGREASGRGFYNV*RGPLSY
Trigger: ATATGAAAGGGGACCACGTCAAACATTATAAAATCC...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR TCA 90 bp TGGAGCACTCCTGACACGGAGAGTCACTCATTAGCAGTACAGGACAGTAAAACATGCTGTACCAGTTGCTaGAGTGTTTCAAACTGGGCC +
Preference number: 4 (lower is better)
Translates to: WSTPDTESHSLAVQDSKTCCTSC*SVSNWA
Trigger: GGCCCAGTTTGAAACACTTCAGCAACTGGTACAGCA...TGTTTTACTGTCCTGTACTGCTAATGAGTGACTCTCCGTGTCAGGAGTGCTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR GCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTCTCTGTCAGTTTCGCTaGTTCTTTATCCTTACATTG +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRILCQFR*FFILTL
Trigger: CAATGTAAGGATAAAGAAGCAGCGAAACTGACAGAG...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR GCA 90 bp ATGTGGCCTACGCTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGTGTGGATATAATTCATaGGCTCGATGTAAGCCATTC +
Preference number: 4 (lower is better)
Translates to: MWPTLASLHGSTHMVYVQCGYNS*ARCKPF
Trigger: GAATGGCTTACATCGAGCGCATGAATTATATCCACA...CTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAGCGTAGGCCACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR GCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTTGTGGATATAATTCATaGGCTCGATGTAAGCCATTC +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRICGYNS*ARCKPF
Trigger: GAATGGCTTACATCGAGCGCATGAATTATATCCACA...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR GCA 90 bp AACCCTTCAGCATTCATATTTATACAGGAAGTTTGTGTGGTCTCCGTCTTGCAGTGGATCATGAGCTCGTaGAGGGAGATCGGGCAGTCC +
Preference number: 4 (lower is better)
Translates to: NPSAFIFIQEVCVVSVLQWIMSS*REIGQS
Trigger: GGACTGCCCGATCTCCCTGCACGAGCTCATGATCCA...CTGCAAGACGGAGACCACACAAACTTCCTGTATAAATATGAATGCTGAAGGGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CCA 90 bp TTTTTGCTTAAAATGCTCACTCCTAAGTTTCAAGAACGAATCACAGTTCGCTGGCGGTACCCAGAGCTCTaGTTCAGGCTGCCGTCCCTC +
Preference number: 4 (lower is better)
Translates to: FLLKMLTPKFQERITVRWRYPEL*FRLPSL
Trigger: GAGGGACGGCAGCCTGAACCAGAGCTCTGGGTACCG...CCAGCGAACTGTGATTCGTTCTTGAAACTTAGGAGTGAGCATTTTAAGCAAAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CCA 90 bp CTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGGAACATATGTTACCGGTTGTTCATGCCTaGGTATGGCACTCTTCCTTT +
Preference number: 4 (lower is better)
Translates to: LASLHGSTHMVYVQEHMLPVVHA*VWHSSF
Trigger: AAAGGAAGAGTGCCATACCCAGGCATGAACAACCGG...TAACATATGTTCCTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR TCA 90 bp ATGTGGCCTACGCTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGAATTTTTCTCCTTTGTaGAAACTCAGGTCATCTTCC +
Preference number: 4 (lower is better)
Translates to: MWPTLASLHGSTHMVYVQNFSPL*KLRSSS
Trigger: GGAAGATGACCTGAGTTTTCACAAAGGAGAAAAATT...CTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAGCGTAGGCCACAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR TCA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTGGATTTTATAATGTTTaGCGTGGTCCCCTTTCATAT +
Preference number: 4 (lower is better)
Translates to: CNLILDGSRCSGAAGYRIGFYNV*RGPLSY
Trigger: ATATGAAAGGGGACCACGTCAAACATTATAAAATCC...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR GCA 90 bp AACCCTTCAGCATTCATATTTATACAGGAAGTTTGTGTGGTCTCCGTCTTGCAGCCTCCCGGTTGTTCATaGCTGGGTATGGCACTCTTC +
Preference number: 4 (lower is better)
Translates to: NPSAFIFIQEVCVVSVLQPPGCS*LGMALF
Trigger: GAAGAGTGCCATACCCAGGCATGAACAACCGGGAGG...CTGCAAGACGGAGACCACACAAACTTCCTGTATAAATATGAATGCTGAAGGGTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR GCA 90 bp CGCTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGGAACATATGTCAAAGTCAGCAATCTTaGAAATTAGTCCATTCCCCA +
Preference number: 4 (lower is better)
Translates to: RWPVSMVAPTWCMYRNICQSQQS*KLVHSP
Trigger: TGGGGAATGGACTAATTTGCAAGATTGCTGACTTTG...ACATATGTTCCTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAGCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CCA 90 bp CTTGTGGTAGAACTGGCTGGCTGCTTTTTGCTTAAAATGCTCACTCCTAAGTTTCGGAGACATGGTGCCTaGCTTAAGGGTCTTTATGGC +
Preference number: 4 (lower is better)
Translates to: LVVELAGCFLLKMLTPKFRRHGA*LKGLYG
Trigger: GCCATAAAGACCCTTAAGCCAGGCACCATGTCTCCG...AAACTTAGGAGTGAGCATTTTAAGCAAAAAGCAGCCAGCCAGTTCTACCACAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR TCA 90 bp AACCCTTCAGCATTCATATTTATACAGGAAGTTTGTGTGGTCTCCGTCTTGCAGACTGGGCCCGCGTTGTaGTATAGTATCCACCATTGT +
Preference number: 4 (lower is better)
Translates to: NPSAFIFIQEVCVVSVLQTGPAL*YSIHHC
Trigger: ACAATGGTGGATACTATATCACAACGCGGGCCCAGT...CTGCAAGACGGAGACCACACAAACTTCCTGTATAAATATGAATGCTGAAGGGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR TCA 90 bp CTTGTGGTAGAACTGGCTGGCTGCTTTTTGCTTAAAATGCTCACTCCTAAGTTTTGCTGTACCAGTTGCTaGAGTGTTTCAAACTGGGCC +
Preference number: 4 (lower is better)
Translates to: LVVELAGCFLLKMLTPKFCCTSC*SVSNWA
Trigger: GGCCCAGTTTGAAACACTTCAGCAACTGGTACAGCA...AAACTTAGGAGTGAGCATTTTAAGCAAAAAGCAGCCAGCCAGTTCTACCACAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR GCA 90 bp TTTTTGCTTAAAATGCTCACTCCTAAGTTTCAAGAACGAATCACAGTTCGCTGGTCCCTGGCCCCCAGCTaGGTGGAAGTTGTTGTAGTT +
Preference number: 4 (lower is better)
Translates to: FLLKMLTPKFQERITVRWSLAPS*VEVVVV
Trigger: AACTACAACAACTTCCACGCAGCTGGGGGCCAGGGA...CCAGCGAACTGTGATTCGTTCTTGAAACTTAGGAGTGAGCATTTTAAGCAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CCA 90 bp AACTGGCTGGCTGCTTTTTGCTTAAAATGCTCACTCCTAAGTTTCAAGAACGAACTGGATGGAGTCAACTaGAGCCACGTAATTGCTGGG +
Preference number: 4 (lower is better)
Translates to: NWLAAFCLKCSLLSFKNELDGVN*SHVIAG
Trigger: CCCAGCAATTACGTGGCTCCAGTTGACTCCATCCAG...TTCGTTCTTGAAACTTAGGAGTGAGCATTTTAAGCAAAAAGCAGCCAGCCAGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CCA 90 bp AACTGGCTGGCTGCTTTTTGCTTAAAATGCTCACTCCTAAGTTTCAAGAACGAATACCACTCTTCTGCCTaGATGGAGTCAACTGGAGCC +
Preference number: 4 (lower is better)
Translates to: NWLAAFCLKCSLLSFKNEYHSSA*MESTGA
Trigger: GGCTCCAGTTGACTCCATCCAGGCAGAAGAGTGGTA...TTCGTTCTTGAAACTTAGGAGTGAGCATTTTAAGCAAAAAGCAGCCAGCCAGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR GCA 90 bp TGGAGCACTCCTGACACGGAGAGTCACTCATTAGCAGTACAGGACAGTAAAACACAAAGTCAGCAATCTTaGAAATTAGTCCATTCCCCA +
Preference number: 4 (lower is better)
Translates to: WSTPDTESHSLAVQDSKTQSQQS*KLVHSP
Trigger: TGGGGAATGGACTAATTTGCAAGATTGCTGACTTTG...TGTTTTACTGTCCTGTACTGCTAATGAGTGACTCTCCGTGTCAGGAGTGCTCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CCA 90 bp TTAGTAGGTTGCCATGACTACAATGCTATGGGTTTAGACCATTTAAATGTGGTTGTGAGTAGGCACCTTTaGTGGTTTCGCTCTCGCGGA +
Preference number: 4 (lower is better)
Translates to: LVGCHDYNAMGLDHLNVVVSRHL*WFRSRG
Trigger: TCCGCGAGAGCGAAACCACCAAAGGTGCCTACTCAC...AACCACATTTAAATGGTCTAAACCCATAGCATTGTAGTCATGGCAACCTACTAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR TCA 90 bp CTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGGAACATATGTTAAATTTTTCTCCTTTGTaGAAACTCAGGTCATCTTCC +
Preference number: 4 (lower is better)
Translates to: LASLHGSTHMVYVQEHMLNFSPL*KLRSSS
Trigger: GGAAGATGACCTGAGTTTTCACAAAGGAGAAAAATT...TAACATATGTTCCTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR GCA 90 bp AACCCTTCAGCATTCATATTTATACAGGAAGTTTGTGTGGTCTCCGTCTTGCAGGTCTCTCAGCATCTTTaGGGCCAAGTTTTCCAAAGT +
Preference number: 4 (lower is better)
Translates to: NPSAFIFIQEVCVVSVLQVSQHL*GQVFQS
Trigger: ACTTTGGAAAACTTGGCCGCAAAGATGCTGAGAGAC...CTGCAAGACGGAGACCACACAAACTTCCTGTATAAATATGAATGCTGAAGGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR GCA 90 bp CTTGTGGTAGAACTGGCTGGCTGCTTTTTGCTTAAAATGCTCACTCCTAAGTTTAGTCTCTTGATCAACTaGAGGGATTCTCGAGGGATT +
Preference number: 4 (lower is better)
Translates to: LVVELAGCFLLKMLTPKFSLLIN*RDSRGI
Trigger: AATCCCTCGAGAATCCCTGCAGTTGATCAAGAGACT...AAACTTAGGAGTGAGCATTTTAAGCAAAAAGCAGCCAGCCAGTTCTACCACAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099967.10
CDS-3UTR CCA 90 bp AACTGGCTGGCTGCTTTTTGCTTAAAATGCTCACTCCTAAGTTTCAAGAACGAAGAGCCACGTAATTGCTaGGAATGTAACCAGTTTCCC +
Preference number: 4 (lower is better)
Translates to: NWLAAFCLKCSLLSFKNEEPRNC*ECNQFP
Trigger: GGGAAACTGGTTACATTCCCAGCAATTACGTGGCTC...TTCGTTCTTGAAACTTAGGAGTGAGCATTTTAAGCAAAAAGCAGCCAGCCAGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CCA 90 bp TTAGTAGGTTGCCATGACTACAATGCTATGGGTTTAGACCATTTAAATGTGGTTTACCACTCTTCTGCCTaGATGGAGTCAACTGGAGCC +
Preference number: 4 (lower is better)
Translates to: LVGCHDYNAMGLDHLNVVYHSSA*MESTGA
Trigger: GGCTCCAGTTGACTCCATCCAGGCAGAAGAGTGGTA...AACCACATTTAAATGGTCTAAACCCATAGCATTGTAGTCATGGCAACCTACTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CCA 90 bp TTTTTGCTTAAAATGCTCACTCCTAAGTTTCAAGAACGAATCACAGTTCGCTGGCCGGTTGTTCATGCCTaGGTATGGCACTCTTCCTTT +
Preference number: 4 (lower is better)
Translates to: FLLKMLTPKFQERITVRWPVVHA*VWHSSF
Trigger: AAAGGAAGAGTGCCATACCCAGGCATGAACAACCGG...CCAGCGAACTGTGATTCGTTCTTGAAACTTAGGAGTGAGCATTTTAAGCAAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR GCA 90 bp TTTTTGCTTAAAATGCTCACTCCTAAGTTTCAAGAACGAATCACAGTTCGCTGGGTCATCTTCCGTCCGTaGTTCATAGTCATAAAGCGC +
Preference number: 4 (lower is better)
Translates to: FLLKMLTPKFQERITVRWVIFRP*FIVIKR
Trigger: GCGCTTTATGACTATGAAGCACGGACGGAAGATGAC...CCAGCGAACTGTGATTCGTTCTTGAAACTTAGGAGTGAGCATTTTAAGCAAAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR GCA 90 bp AACTGGCTGGCTGCTTTTTGCTTAAAATGCTCACTCCTAAGTTTCAAGAACGAAGTCTCTCAGCATCTTTaGGGCCAAGTTTTCCAAAGT +
Preference number: 4 (lower is better)
Translates to: NWLAAFCLKCSLLSFKNEVSQHL*GQVFQS
Trigger: ACTTTGGAAAACTTGGCCGCAAAGATGCTGAGAGAC...TTCGTTCTTGAAACTTAGGAGTGAGCATTTTAAGCAAAAAGCAGCCAGCCAGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CCA 90 bp TTAGTAGGTTGCCATGACTACAATGCTATGGGTTTAGACCATTTAAATGTGGTTGTTCATGCCTGGGTATaGCACTCTTCCTTTGGTGAC +
Preference number: 4 (lower is better)
Translates to: LVGCHDYNAMGLDHLNVVVHAWV*HSSFGD
Trigger: GTCACCAAAGGAAGAGTGCCATACCCAGGCATGAAC...AACCACATTTAAATGGTCTAAACCCATAGCATTGTAGTCATGGCAACCTACTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CCA 90 bp TTAGTAGGTTGCCATGACTACAATGCTATGGGTTTAGACCATTTAAATGTGGTTTCCTTTTTCCAGCAGTaGATCATGAGCTCGTGCAGG +
Preference number: 4 (lower is better)
Translates to: LVGCHDYNAMGLDHLNVVSFFQQ*IMSSCR
Trigger: CCTGCACGAGCTCATGATCCACTGCTGGAAAAAGGA...AACCACATTTAAATGGTCTAAACCCATAGCATTGTAGTCATGGCAACCTACTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CCA 90 bp TTTTTGCTTAAAATGCTCACTCCTAAGTTTCAAGAACGAATCACAGTTCGCTGGAAGAAAGGTACCTCTTaGGTTTCCAAAGGACAGGAG +
Preference number: 4 (lower is better)
Translates to: FLLKMLTPKFQERITVRWKKGTS*VSKGQE
Trigger: CTCCTGTCCTTTGGAAACCCAAGAGGTACCTTTCTT...CCAGCGAACTGTGATTCGTTCTTGAAACTTAGGAGTGAGCATTTTAAGCAAAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR GCA 90 bp TTTTTGCTTAAAATGCTCACTCCTAAGTTTCAAGAACGAATCACAGTTCGCTGGAAACAACGAGTCACGTaGAACTTCCCAAGCATCTTT +
Preference number: 4 (lower is better)
Translates to: FLLKMLTPKFQERITVRWKQRVT*NFPSIF
Trigger: AAAGATGCTTGGGAAGTTGCACGTGACTCGTTGTTT...CCAGCGAACTGTGATTCGTTCTTGAAACTTAGGAGTGAGCATTTTAAGCAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063091.13
CDS-3UTR CCA 90 bp TTAGTAGGTTGCCATGACTACAATGCTATGGGTTTAGACCATTTAAATGTGGTTAAGAAAGGTACCTCTTaGGTTTCCAAAGGACAGGAG +
Preference number: 4 (lower is better)
Translates to: LVGCHDYNAMGLDHLNVVKKGTS*VSKGQE
Trigger: CTCCTGTCCTTTGGAAACCCAAGAGGTACCTTTCTT...AACCACATTTAAATGGTCTAAACCCATAGCATTGTAGTCATGGCAACCTACTAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS CCA 90 bp AGTTCGGGATGGAGGTCACGCCGAAGCTGGGGTAGTGCTGAGGGGTaGGGTCTGTGCCATAGCGGTACCCAGAGCTCTGGTTCAGGCTGC +
Preference number: 5 (lower is better)
Translates to: SSGWRSRRSWGSAEG*GLCHSGTQSSGSGC
Trigger: GCAGCCTGAACCAGAGCTCTGGGTACCGCTATGGCACAGACCCCACCCCTCAGCACTACCCCAGCTTCGGCGTGACCTCCATCCCGAACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
ENSMUST00000148152.8
CDS TCA 90 bp AACAGTGTCACTCCTGTCCCTCCTCTCGTGCGTAGGGTCCCAGTGTaGGAGGAGGAGTTCACACCCCCAAAGACGGTGAGTCCCTGGCCC +
Preference number: 5 (lower is better)
Translates to: NSVTPVPPLVRRVPV*EEEFTPPKTVSPWP
Trigger: GGGCCAGGGACTCACCGTCTTTGGGGGTGTGAACTCCTCCTCTCACACTGGGACCCTACGCACGAGAGGAGGGACAGGAGTGACACTGTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
ENSMUST00000148152.8
CDS GCA 90 bp GGAGGAGTTCACACCCCCAAAGACGGTGAGTCCCTGGCCCCCAGCTaGGTGGAAGTTGTTGTAGTTCGGGATGGAGGTCACGCCGAAGCT +
Preference number: 5 (lower is better)
Translates to: GGVHTPKDGESLAPS*VEVVVVRDGGHAEA
Trigger: AGCTTCGGCGTGACCTCCATCCCGAACTACAACAACTTCCACGCAGCTGGGGGCCAGGGACTCACCGTCTTTGGGGGTGTGAACTCCTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 7 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
ENSMUST00000148152.8
CDS CCA 90 bp CTGCGTGGAAGTTGTTGTAGTTCGGGATGGAGGTCACGCCGAAGCTaGGGTAGTGCTGAGGGGTGGGGTCTGTGCCATAGCGGTACCCAG +
Preference number: 5 (lower is better)
Translates to: LRGSCCSSGWRSRRS*GSAEGWGLCHSGTQ
Trigger: CTGGGTACCGCTATGGCACAGACCCCACCCCTCAGCACTACCCCAGCTTCGGCGTGACCTCCATCCCGAACTACAACAACTTCCACGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
ENSMUST00000148152.8
CDS TCA 90 bp GTAGGGTCCCAGTGTGAGAGGAGGAGTTCACACCCCCAAAGACGGTaGGTCCCTGGCCCCCAGCTGCGTGGAAGTTGTTGTAGTTCGGGA +
Preference number: 5 (lower is better)
Translates to: VGSQCERRSSHPQRR*VPGPQLRGSCCSSG
Trigger: TCCCGAACTACAACAACTTCCACGCAGCTGGGGGCCAGGGACTCACCGTCTTTGGGGGTGTGAACTCCTCCTCTCACACTGGGACCCTAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 7 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
ENSMUST00000148152.8
CDS-3UTR CAA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAACCAGTTTCCCCGGTaGTCAAGGAGCGGGCTTCCC +
Preference number: 5 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYNQFPR*SRSGLP
Trigger: GGGAAGCCCGCTCCTTGACAACCGGGGAAACTGGTT...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CAA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACTCCAGCACCTCCCGGTaGTTCATGCCTGGGTATGGC +
Preference number: 5 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYSSTSR*FMPGYG
Trigger: GCCATACCCAGGCATGAACAACCGGGAGGTGCTGGA...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CAA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGAAACCAGTTTCCCCGGTaGTCAAGGAGCGGGCTTCCC +
Preference number: 5 (lower is better)
Translates to: SWLQNWKLMGRGREASGRNQFPR*SRSGLP
Trigger: GGGAAGCCCGCTCCTTGACAACCGGGGAAACTGGTT...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CAA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGATCCAGCACCTCCCGGTaGTTCATGCCTGGGTATGGC +
Preference number: 5 (lower is better)
Translates to: SWLQNWKLMGRGREASGRSSTSR*FMPGYG
Trigger: GCCATACCCAGGCATGAACAACCGGGAGGTGCTGGA...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS GCA 90 bp GGGTGGGGTCTGTGCCATAGCGGTACCCAGAGCTCTGGTTCAGGCTaGCGTCCCTCTCCTCTGTCAGTTTCGCTGCTTCTTTATCCTTAC +
Preference number: 5 (lower is better)
Translates to: GWGLCHSGTQSSGSG*RPSPLSVSLLLYPY
Trigger: GTAAGGATAAAGAAGCAGCGAAACTGACAGAGGAGAGGGACGGCAGCCTGAACCAGAGCTCTGGGTACCGCTATGGCACAGACCCCACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
ENSMUST00000148152.8
ENSMUST00000157009.8
CDS-3UTR CAA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTAACCAGTTTCCCCGGTaGTCAAGGAGCGGGCTTCCC +
Preference number: 5 (lower is better)
Translates to: CNLILDGSRCSGAAGYRINQFPR*SRSGLP
Trigger: GGGAAGCCCGCTCCTTGACAACCGGGGAAACTGGTT...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CAA 90 bp ATGTGGCCTACGCTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGTCCAGCACCTCCCGGTaGTTCATGCCTGGGTATGGC +
Preference number: 5 (lower is better)
Translates to: MWPTLASLHGSTHMVYVQSSTSR*FMPGYG
Trigger: GCCATACCCAGGCATGAACAACCGGGAGGTGCTGGA...CTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAGCGTAGGCCACAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CAA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTTCCAGCACCTCCCGGTaGTTCATGCCTGGGTATGGC +
Preference number: 5 (lower is better)
Translates to: CNLILDGSRCSGAAGYRISSTSR*FMPGYG
Trigger: GCCATACCCAGGCATGAACAACCGGGAGGTGCTGGA...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CAA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACTCAAGCAAACTTCCTTaGCTCATGTACTCCGTGACG +
Preference number: 5 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYSSKLP*LMYSVT
Trigger: CGTCACGGAGTACATGAGCAAAGGAAGTTTGCTTGA...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CAA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGACCATGTCCACAAGGTTaGGCAACTTCAGAGCTCTTC +
Preference number: 5 (lower is better)
Translates to: SWLQNWKLMGRGREASGRPCPQG*ATSELF
Trigger: GAAGAGCTCTGAAGTTGCCAAACCTTGTGGACATGG...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CAA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACTCCCCACTAGAATGTTaGCTGATCGCAGATCTCTGT +
Preference number: 5 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYSPLEC*LIADLC
Trigger: ACAGAGATCTGCGATCAGCAAACATTCTAGTGGGGA...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CAA 90 bp ATGAGGCCACCGGCTTGCAGGCTGACACCAGTGCTTTGCTGGCAGGGTTCTGCAGACCATACGTCAGACTaGATTGTGAACCTTCCATAC +
Preference number: 5 (lower is better)
Translates to: MRPPACRLTPVLCWQGSADHTSD*IVNLPY
Trigger: GTATGGAAGGTTCACAATCAAGTCTGACGTATGGTC...TGCAGAACCCTGCCAGCAAAGCACTGGTGTCAGCCTGCAAGCCGGTGGCCTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CAA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGATATGGCACTCTTCCTTaGGTGACCAGCTCTGTGAGT +
Preference number: 5 (lower is better)
Translates to: SWLQNWKLMGRGREASGRYGTLP*VTSSVS
Trigger: ACTCACAGAGCTGGTCACCAAAGGAAGAGTGCCATA...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CAA 90 bp ATGAGGCCACCGGCTTGCAGGCTGACACCAGTGCTTTGCTGGCAGGGTTCTGCACAGACATCTTTGGTTTaGACAGACAGATCGGTAAGC +
Preference number: 5 (lower is better)
Translates to: MRPPACRLTPVLCWQGSAQTSLV*TDRSVS
Trigger: GCTTACCGATCTGTCTGTCAAAACCAAAGATGTCTG...TGCAGAACCCTGCCAGCAAAGCACTGGTGTCAGCCTGCAAGCCGGTGGCCTCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099967.10
CDS TCA 90 bp TCTTTGGTTTTGACAGACAGATCGGTAAGCCTTGGCATCCCTTTGTaGCAGGGAACTACTAGGCGGCAGCAGAGACCTGCGGCTCTCTCT +
Preference number: 5 (lower is better)
Translates to: SLVLTDRSVSLGIPL*QGTTRRQQRPAALS
Trigger: AGAGAGAGCCGCAGGTCTCTGCTGCCGCCTAGTAGTTCCCTGTCACAAAGGGATGCCAAGGCTTACCGATCTGTCTGTCAAAACCAAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099967.10
CDS-3UTR CAA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGATCAAGCAAACTTCCTTaGCTCATGTACTCCGTGACG +
Preference number: 5 (lower is better)
Translates to: SWLQNWKLMGRGREASGRSSKLP*LMYSVT
Trigger: CGTCACGGAGTACATGAGCAAAGGAAGTTTGCTTGA...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CAA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTCCATGTCCACAAGGTTaGGCAACTTCAGAGCTCTTC +
Preference number: 5 (lower is better)
Translates to: CNLILDGSRCSGAAGYRIPCPQG*ATSELF
Trigger: GAAGAGCTCTGAAGTTGCCAAACCTTGTGGACATGG...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CAA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGATCCCCACTAGAATGTTaGCTGATCGCAGATCTCTGT +
Preference number: 5 (lower is better)
Translates to: SWLQNWKLMGRGREASGRSPLEC*LIADLC
Trigger: ACAGAGATCTGCGATCAGCAAACATTCTAGTGGGGA...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CAA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACGGGAAACTTCGCACCTaGTCTTGCTGTGTATTCATT +
Preference number: 5 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYGKLRT*SCCVFI
Trigger: AATGAATACACAGCAAGACAAGGTGCGAAGTTTCCC...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CAA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACGACCATACGTCAGACTaGATTGTGAACCTTCCATAC +
Preference number: 5 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYDHTSD*IVNLPY
Trigger: GTATGGAAGGTTCACAATCAAGTCTGACGTATGGTC...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CAA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTTATGGCACTCTTCCTTaGGTGACCAGCTCTGTGAGT +
Preference number: 5 (lower is better)
Translates to: CNLILDGSRCSGAAGYRIYGTLP*VTSSVS
Trigger: ACTCACAGAGCTGGTCACCAAAGGAAGAGTGCCATA...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CAA 90 bp TGGAGCACTCCTGACACGGAGAGTCACTCATTAGCAGTACAGGACAGTAAAACATCCAGCACCTCCCGGTaGTTCATGCCTGGGTATGGC +
Preference number: 5 (lower is better)
Translates to: WSTPDTESHSLAVQDSKTSSTSR*FMPGYG
Trigger: GCCATACCCAGGCATGAACAACCGGGAGGTGCTGGA...TGTTTTACTGTCCTGTACTGCTAATGAGTGACTCTCCGTGTCAGGAGTGCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS GCA 90 bp GTATTTCCATTCCAGGTACCAAGCCACACTTCAGCGAAACACCCCTaGCCCAGCTTCTTCTCCAGAAACAACGAGTCACGTGCAACTTCC +
Preference number: 5 (lower is better)
Translates to: VFPFQVPSHTSAKHP*PSFFSRNNESRATS
Trigger: GGAAGTTGCACGTGACTCGTTGTTTCTGGAGAAGAAGCTGGGGCAGGGGTGTTTCGCTGAAGTGTGGCTTGGTACCTGGAATGGAAATAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000063091.13
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000146287.8
CDS-3UTR CAA 90 bp GTCACATGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACGTAATGCTGTACCAGTaGCTGAAGTGTTTCAAACTG +
Preference number: 5 (lower is better)
Translates to: VTCNLILDGSRCSGAAGYVMLYQ*LKCFKL
Trigger: CAGTTTGAAACACTTCAGCAACTGGTACAGCATTAC...GTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCATGTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CAA 90 bp ATGTGGCCTACGCTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGTCAAGCAAACTTCCTTaGCTCATGTACTCCGTGACG +
Preference number: 5 (lower is better)
Translates to: MWPTLASLHGSTHMVYVQSSKLP*LMYSVT
Trigger: CGTCACGGAGTACATGAGCAAAGGAAGTTTGCTTGA...CTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAGCGTAGGCCACAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CAA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTTCAAGCAAACTTCCTTaGCTCATGTACTCCGTGACG +
Preference number: 5 (lower is better)
Translates to: CNLILDGSRCSGAAGYRISSKLP*LMYSVT
Trigger: CGTCACGGAGTACATGAGCAAAGGAAGTTTGCTTGA...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CAA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGAGGGAAACTTCGCACCTaGTCTTGCTGTGTATTCATT +
Preference number: 5 (lower is better)
Translates to: SWLQNWKLMGRGREASGRGKLRT*SCCVFI
Trigger: AATGAATACACAGCAAGACAAGGTGCGAAGTTTCCC...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CAA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGAGACCATACGTCAGACTaGATTGTGAACCTTCCATAC +
Preference number: 5 (lower is better)
Translates to: SWLQNWKLMGRGREASGRDHTSD*IVNLPY
Trigger: GTATGGAAGGTTCACAATCAAGTCTGACGTATGGTC...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CAA 90 bp AGCTGGCTACAGAATTGGAAGCTAATGGGGAGGGGTAGGGAGGCCTCGGGAAGAGTAATGCTGTACCAGTaGCTGAAGTGTTTCAAACTG +
Preference number: 5 (lower is better)
Translates to: SWLQNWKLMGRGREASGRVMLYQ*LKCFKL
Trigger: CAGTTTGAAACACTTCAGCAACTGGTACAGCATTAC...TCTTCCCGAGGCCTCCCTACCCCTCCCCATTAGCTTCCAATTCTGTAGCCAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CAA 90 bp CGCTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGGAACATATGTCCATGTCCACAAGGTTaGGCAACTTCAGAGCTCTTC +
Preference number: 5 (lower is better)
Translates to: RWPVSMVAPTWCMYRNICPCPQG*ATSELF
Trigger: GAAGAGCTCTGAAGTTGCCAAACCTTGTGGACATGG...ACATATGTTCCTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CAA 90 bp TGCAATCTGATCCTGGACGGTTCTCGCTGCTCTGGGGCAGCTGGCTACAGAATTGTAATGCTGTACCAGTaGCTGAAGTGTTTCAAACTG +
Preference number: 5 (lower is better)
Translates to: CNLILDGSRCSGAAGYRIVMLYQ*LKCFKL
Trigger: CAGTTTGAAACACTTCAGCAACTGGTACAGCATTAC...AATTCTGTAGCCAGCTGCCCCAGAGCAGCGAGAACCGTCCAGGATCAGATTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS-3UTR CAA 90 bp TTTTTGCTTAAAATGCTCACTCCTAAGTTTCAAGAACGAATCACAGTTCGCTGGAACCAGTTTCCCCGGTaGTCAAGGAGCGGGCTTCCC +
Preference number: 5 (lower is better)
Translates to: FLLKMLTPKFQERITVRWNQFPR*SRSGLP
Trigger: GGGAAGCCCGCTCCTTGACAACCGGGGAAACTGGTT...CCAGCGAACTGTGATTCGTTCTTGAAACTTAGGAGTGAGCATTTTAAGCAAAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CAA 90 bp CTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGGAACATATGTTATGTCTCTCAGCATCTTaGCGGCCAAGTTTTCCAAAG +
Preference number: 5 (lower is better)
Translates to: LASLHGSTHMVYVQEHMLCLSAS*RPSFPK
Trigger: CTTTGGAAAACTTGGCCGCAAAGATGCTGAGAGACA...TAACATATGTTCCTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CAA 90 bp CTGGCCAGTCTCCATGGTAGCACCCACATGGTGTATGTACAGGAACATATGTTACCATTTCCCAGTCTCTaGATCAACTGCAGGGATTCT +
Preference number: 5 (lower is better)
Translates to: LASLHGSTHMVYVQEHMLPFPSL*INCRDS
Trigger: AGAATCCCTGCAGTTGATCAAGAGACTGGGAAATGG...TAACATATGTTCCTGTACATACACCATGTGGGTGCTACCATGGAGACTGGCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099967.10
CDS-3UTR CAA 90 bp CTTGTGGTAGAACTGGCTGGCTGCTTTTTGCTTAAAATGCTCACTCCTAAGTTTTATGGCACTCTTCCTTaGGTGACCAGCTCTGTGAGT +
Preference number: 5 (lower is better)
Translates to: LVVELAGCFLLKMLTPKFYGTLP*VTSSVS
Trigger: ACTCACAGAGCTGGTCACCAAAGGAAGAGTGCCATA...AAACTTAGGAGTGAGCATTTTAAGCAAAAAGCAGCCAGCCAGTTCTACCACAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CAA 90 bp AACCCTTCAGCATTCATATTTATACAGGAAGTTTGTGTGGTCTCCGTCTTGCAGTCCCCACTAGAATGTTaGCTGATCGCAGATCTCTGT +
Preference number: 5 (lower is better)
Translates to: NPSAFIFIQEVCVVSVLQSPLEC*LIADLC
Trigger: ACAGAGATCTGCGATCAGCAAACATTCTAGTGGGGA...CTGCAAGACGGAGACCACACAAACTTCCTGTATAAATATGAATGCTGAAGGGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CAA 90 bp CTTGTGGTAGAACTGGCTGGCTGCTTTTTGCTTAAAATGCTCACTCCTAAGTTTGGGAAACTTCGCACCTaGTCTTGCTGTGTATTCATT +
Preference number: 5 (lower is better)
Translates to: LVVELAGCFLLKMLTPKFGKLRT*SCCVFI
Trigger: AATGAATACACAGCAAGACAAGGTGCGAAGTTTCCC...AAACTTAGGAGTGAGCATTTTAAGCAAAAAGCAGCCAGCCAGTTCTACCACAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CAA 90 bp CTTGTGGTAGAACTGGCTGGCTGCTTTTTGCTTAAAATGCTCACTCCTAAGTTTGACCATACGTCAGACTaGATTGTGAACCTTCCATAC +
Preference number: 5 (lower is better)
Translates to: LVVELAGCFLLKMLTPKFDHTSD*IVNLPY
Trigger: GTATGGAAGGTTCACAATCAAGTCTGACGTATGGTC...AAACTTAGGAGTGAGCATTTTAAGCAAAAAGCAGCCAGCCAGTTCTACCACAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CAA 90 bp TTAGTAGGTTGCCATGACTACAATGCTATGGGTTTAGACCATTTAAATGTGGTTTATGGCACTCTTCCTTaGGTGACCAGCTCTGTGAGT +
Preference number: 5 (lower is better)
Translates to: LVGCHDYNAMGLDHLNVVYGTLP*VTSSVS
Trigger: ACTCACAGAGCTGGTCACCAAAGGAAGAGTGCCATA...AACCACATTTAAATGGTCTAAACCCATAGCATTGTAGTCATGGCAACCTACTAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS-3UTR CAA 90 bp TTAGTAGGTTGCCATGACTACAATGCTATGGGTTTAGACCATTTAAATGTGGTTTCAAGCAAACTTCCTTaGCTCATGTACTCCGTGACG +
Preference number: 5 (lower is better)
Translates to: LVGCHDYNAMGLDHLNVVSSKLP*LMYSVT
Trigger: CGTCACGGAGTACATGAGCAAAGGAAGTTTGCTTGA...AACCACATTTAAATGGTCTAAACCCATAGCATTGTAGTCATGGCAACCTACTAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
CDS CCA 72 bp TGGAGGTCACGCCGAAGCTGGGGTAGTGCTGAGGGGTaGGGTCTGTGCCATAGCGGTACCCAGAGCTCTGGT +
Preference number: 6 (lower is better)
Translates to: WRSRRSWGSAEG*GLCHSGTQSSG
Trigger: ACCAGAGCTCTGGGTACCGCTATGGCACAGACCCCACCCCTCAGCACTACCCCAGCTTCGGCGTGACCTCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
ENSMUST00000148152.8
CDS CCA 72 bp GGCCCCCAGCTGCGTGGAAGTTGTTGTAGTTCGGGATaGAGGTCACGCCGAAGCTGGGGTAGTGCTGAGGGG +
Preference number: 6 (lower is better)
Translates to: GPQLRGSCCSSG*RSRRSWGSAEG
Trigger: CCCCTCAGCACTACCCCAGCTTCGGCGTGACCTCCATCCCGAACTACAACAACTTCCACGCAGCTGGGGGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
ENSMUST00000148152.8
CDS GCA 72 bp CACACCCCCAAAGACGGTGAGTCCCTGGCCCCCAGCTaGGTGGAAGTTGTTGTAGTTCGGGATGGAGGTCAC +
Preference number: 6 (lower is better)
Translates to: HTPKDGESLAPS*VEVVVVRDGGH
Trigger: GTGACCTCCATCCCGAACTACAACAACTTCCACGCAGCTGGGGGCCAGGGACTCACCGTCTTTGGGGGTGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 7 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
ENSMUST00000148152.8
CDS TCA 72 bp CAGTGTGAGAGGAGGAGTTCACACCCCCAAAGACGGTaGGTCCCTGGCCCCCAGCTGCGTGGAAGTTGTTGT +
Preference number: 6 (lower is better)
Translates to: QCERRSSHPQRR*VPGPQLRGSCC
Trigger: ACAACAACTTCCACGCAGCTGGGGGCCAGGGACTCACCGTCTTTGGGGGTGTGAACTCCTCCTCTCACACTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 7 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
ENSMUST00000148152.8
CDS TCA 72 bp ACTCCTGTCCCTCCTCTCGTGCGTAGGGTCCCAGTGTaGGAGGAGGAGTTCACACCCCCAAAGACGGTGAGT +
Preference number: 6 (lower is better)
Translates to: TPVPPLVRRVPV*EEEFTPPKTVS
Trigger: ACTCACCGTCTTTGGGGGTGTGAACTCCTCCTCTCACACTGGGACCCTACGCACGAGAGGAGGGACAGGAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
ENSMUST00000148152.8
CDS GCA 72 bp GCGCCACAAACAGTGTCACTCCTGTCCCTCCTCTCGTaGGTAGGGTCCCAGTGTGAGAGGAGGAGTTCACAC +
Preference number: 6 (lower is better)
Translates to: APQTVSLLSLLS*VGSQCERRSSH
Trigger: GTGTGAACTCCTCCTCTCACACTGGGACCCTACGCACGAGAGGAGGGACAGGAGTGACACTGTTTGTGGCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
ENSMUST00000148152.8
CDS TCA 72 bp TTGACAGACAGATCGGTAAGCCTTGGCATCCCTTTGTaGCAGGGAACTACTAGGCGGCAGCAGAGACCTGCG +
Preference number: 6 (lower is better)
Translates to: LTDRSVSLGIPL*QGTTRRQQRPA
Trigger: CGCAGGTCTCTGCTGCCGCCTAGTAGTTCCCTGTCACAAAGGGATGCCAAGGCTTACCGATCTGTCTGTCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099967.10
CDS CCA 72 bp GGTGGTTTCGCTCTCGCGGATAAGAAAGGTACCTCTTaGGTTTCCAAAGGACAGGAGCTGTCTCTCAGCATC +
Preference number: 6 (lower is better)
Translates to: GGFALADKKGTS*VSKGQELSLSI
Trigger: GATGCTGAGAGACAGCTCCTGTCCTTTGGAAACCCAAGAGGTACCTTTCTTATCCGCGAGAGCGAAACCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8
CDS CAA 72 bp CAATCTTGCAAATTAGTCCATTCCCCACTAGAATGTTaGCTGATCGCAGATCTCTGTGGATATAATTCATGC +
Preference number: 6 (lower is better)
Translates to: QSCKLVHSPLEC*LIADLCGYNSC
Trigger: GCATGAATTATATCCACAGAGATCTGCGATCAGCAAACATTCTAGTGGGGAATGGACTAATTTGCAAGATTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000063091.13
ENSMUST00000099967.10
ENSMUST00000126486.8
ENSMUST00000135242.8
ENSMUST00000136659.2
ENSMUST00000146287.8