Pregenerated sensors for FXYD6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000066705Ensembl transcript IDs: ENSMUST00000085939.8, ENSMUST00000217381.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GACTTCTGGCCTTTGCATCCAGGCTGCTCATACCCTGTTGCTCTCTaGCCCTCAGCCCCGCTGCCCCTGAACCCTTCCATCCCTCTCCAC | + |
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Preference number: 1 (lower is better) Translates to: DFWPLHPGCSYPVAL*PSAPLPLNPSIPLH Trigger: GTGGAGAGGGATGGAAGGGTTCAGGGGCAGCGGGGCTGAGGGTCAGAGAGCAACAGGGTATGAGCAGCCTGGATGCAAAGGCCAGAAGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR TCA 90 bp | GCAGGTTGGGCAGGCTCCGGTGTGAGTTTCCACTCTGATGACTTTTaGCTTCTGGCCTTTGCATCCAGGCTGCTCATACCCTGTTGCTCT | + |
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Preference number: 1 (lower is better) Translates to: AGWAGSGVSFHSDDF*LLAFASRLLIPCCS Trigger: AGAGCAACAGGGTATGAGCAGCCTGGATGCAAAGGCCAGAAGTCAAAAGTCATCAGAGTGGAAACTCACACCGGAGCCTGCCCAACCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR GCA 90 bp | ACAGACACGGCACAGACACGGCACAGACAGGGTCCAGAGCCCGGCTaGAGTGAGAAGTGTTGCATCATTAATATAGGACTGGGGTTAGTG | + |
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Preference number: 1 (lower is better) Translates to: TDTAQTRHRQGPEPG*SEKCCIINIGLGLV Trigger: CACTAACCCCAGTCCTATATTAATGATGCAACACTTCTCACTGCAGCCGGGCTCTGGACCCTGTCTGTGCCGTGTCTGTGCCGTGTCTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR CCA 90 bp | GAGTCCACAAAGAATAGCAACAAACTTTCTCAGCCCTGGGTCCGCTaGGGACTCCTGCCCTGGGGACAACTAACTCTCTCTCAATCCAGA | + |
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Preference number: 1 (lower is better) Translates to: ESTKNSNKLSQPWVR*GLLPWGQLTLSQSR Trigger: TCTGGATTGAGAGAGAGTTAGTTGTCCCCAGGGCAGGAGTCCCCAGCGGACCCAGGGCTGAGAAAGTTTGTTGCTATTCTTTGTGGACTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR CCA 90 bp | CCTGCAGCAATGACTCTCCAGCTGCAAACAGACCTTCTGAACTGGTaGAATCCAGAGCAAGTTTCTTCTGAGAGTCCACAAAGAATAGCA | + |
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Preference number: 1 (lower is better) Translates to: PAAMTLQLQTDLLNW*NPEQVSSESPQRIA Trigger: TGCTATTCTTTGTGGACTCTCAGAAGAAACTTGCTCTGGATTCCACCAGTTCAGAAGGTCTGTTTGCAGCTGGAGAGTCATTGCTGCAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR TCA 90 bp | GCAAACAGACCTTCTGAACTGGTGGAATCCAGAGCAAGTTTCTTCTaGGAGTCCACAAAGAATAGCAACAAACTTTCTCAGCCCTGGGTC | + |
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Preference number: 1 (lower is better) Translates to: ANRPSELVESRASFF*ESTKNSNKLSQPWV Trigger: GACCCAGGGCTGAGAAAGTTTGTTGCTATTCTTTGTGGACTCTCAGAAGAAACTTGCTCTGGATTCCACCAGTTCAGAAGGTCTGTTTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR-3UTR CCA 90 bp | AAGCAGGAAAGGTGGATGAAGGCAGGGGGACTCCAGAGCCTACCAGGTTATTGCCAGCCCTGGGTCCGCTaGGGACTCCTGCCCTGGGGA | + |
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Preference number: 2 (lower is better) Translates to: KQERWMKAGGLQSLPGYCQPWVR*GLLPWG Trigger: TCCCCAGGGCAGGAGTCCCCAGCGGACCCAGGGCTG...GCAATAACCTGGTAGGCTCTGGAGTCCCCCTGCCTTCATCCACCTTTCCTGCTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR-3UTR TCA 90 bp | ACTTCTGGCCTTTGCATCCAGGCTGCTCATACCCTGTTGCTCTCTGACCCTCAGCATCCCTCTCCACTCTaGCCCCTGACAGGCAGGGAC | + |
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Preference number: 2 (lower is better) Translates to: TSGLCIQAAHTLLLSDPQHPSPL*PLTGRD Trigger: GTCCCTGCCTGTCAGGGGTCAGAGTGGAGAGGGATG...CTGAGGGTCAGAGAGCAACAGGGTATGAGCAGCCTGGATGCAAAGGCCAGAAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR-3UTR CCA 90 bp | GCAGTGGACACCCTAAAAGGAAAAGGAGCCCTGGAAGGCAGATCCTGCAGCAATGCTGGCCTTGGCTTCTaGAGGCTTCACGCTGGAGGC | + |
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Preference number: 2 (lower is better) Translates to: AVDTLKGKGALEGRSCSNAGLGF*RLHAGG Trigger: GCCTCCAGCGTGAAGCCTCCAGAAGCCAAGGCCAGC...ATTGCTGCAGGATCTGCCTTCCAGGGCTCCTTTTCCTTTTAGGGTGTCCACTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR-3UTR CCA 90 bp | TGCAGTGGACACCCTAAAAGGAAAAGGAGCCCTGGAAGGCAGATCCTGCAGCAAGCTGGCCTTGGCTTCTaGAGGCTTCACGCTGGAGGC | + |
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Preference number: 2 (lower is better) Translates to: CSGHPKRKRSPGRQILQQAGLGF*RLHAGG Trigger: GCCTCCAGCGTGAAGCCTCCAGAAGCCAAGGCCAGC...TTGCTGCAGGATCTGCCTTCCAGGGCTCCTTTTCCTTTTAGGGTGTCCACTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR-3UTR TCA 90 bp | ACCCTTTCCACTGCCTGTCCCCTTGACTATCTCCTGCTAGAGACCAGCTTCGGAAGCAGGAAAGGTGGATaGAGGCAGGGGGACTCCAGA | + |
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Preference number: 2 (lower is better) Translates to: TLSTACPLDYLLLETSFGSRKGG*RQGDSR Trigger: TCTGGAGTCCCCCTGCCTTCATCCACCTTTCCTGCT...TCCGAAGCTGGTCTCTAGCAGGAGATAGTCAAGGGGACAGGCAGTGGAAAGGGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR-3UTR CCA 90 bp | ACCCTTTCCACTGCCTGTCCCCTTGACTATCTCCTGCTAGAGACCAGCTTCGGAAAAGGGTGGGGCAGATaGGGACTCTGCAGTGGACAC | + |
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Preference number: 2 (lower is better) Translates to: TLSTACPLDYLLLETSFGKGWGR*GLCSGH Trigger: GTGTCCACTGCAGAGTCCCCATCTGCCCCACCCTTT...TCCGAAGCTGGTCTCTAGCAGGAGATAGTCAAGGGGACAGGCAGTGGAAAGGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR-3UTR CCA 90 bp | ACTTCTGGCCTTTGCATCCAGGCTGCTCATACCCTGTTGCTCTCTGACCCTCAGAAAGGGTGGGGCAGATaGGGACTCTGCAGTGGACAC | + |
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Preference number: 2 (lower is better) Translates to: TSGLCIQAAHTLLLSDPQKGWGR*GLCSGH Trigger: GTGTCCACTGCAGAGTCCCCATCTGCCCCACCCTTT...CTGAGGGTCAGAGAGCAACAGGGTATGAGCAGCCTGGATGCAAAGGCCAGAAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR-3UTR CCA 90 bp | AAGCAGGAAAGGTGGATGAAGGCAGGGGGACTCCAGAGCCTACCAGGTTATTGCGTGTTCCCTAAAGGGTaGGGCAGATGGGGACTCTGC | + |
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Preference number: 2 (lower is better) Translates to: KQERWMKAGGLQSLPGYCVFPKG*GRWGLC Trigger: GCAGAGTCCCCATCTGCCCCACCCTTTAGGGAACAC...GCAATAACCTGGTAGGCTCTGGAGTCCCCCTGCCTTCATCCACCTTTCCTGCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR-3UTR TCA 90 bp | AAGACAGAGATCAGCAGTCCCAGTACACAGTGTGGCTTGGTTAGTTTCCAAGGGCATCCCTCTCCACTCTaGCCCCTGACAGGCAGGGAC | + |
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Preference number: 2 (lower is better) Translates to: KTEISSPSTQCGLVSFQGHPSPL*PLTGRD Trigger: GTCCCTGCCTGTCAGGGGTCAGAGTGGAGAGGGATG...CCCTTGGAAACTAACCAAGCCACACTGTGTACTGGGACTGCTGATCTCTGTCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR-3UTR CCA 90 bp | AGTTTCCAAGGGAACACATTAGGCAGGTTGGGCAGGCTCCGGTGTGAGTTTCCAGCGCCGATGGTAGCGTaGGAGAGGAAGCACACAGTT | + |
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Preference number: 2 (lower is better) Translates to: SFQGNTLGRLGRLRCEFPAPMVA*ERKHTV Trigger: AACTGTGTGCTTCCTCTCCCACGCTACCATCGGCGC...TGGAAACTCACACCGGAGCCTGCCCAACCTGCCTAATGTGTTCCCTTGGAAACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR-3UTR CCA 90 bp | AGTTTCCAAGGGAACACATTAGGCAGGTTGGGCAGGCTCCGGTGTGAGTTTCCAAAACTTTCTCAGCCCTaGGTCCGCTGGGGACTCCTG | + |
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Preference number: 2 (lower is better) Translates to: SFQGNTLGRLGRLRCEFPKLSQP*VRWGLL Trigger: CAGGAGTCCCCAGCGGACCCAGGGCTGAGAAAGTTT...TGGAAACTCACACCGGAGCCTGCCCAACCTGCCTAATGTGTTCCCTTGGAAACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR-3UTR CCA 90 bp | TGCAGTGGACACCCTAAAAGGAAAAGGAGCCCTGGAAGGCAGATCCTGCAGCAAAAACTTTCTCAGCCCTaGGTCCGCTGGGGACTCCTG | + |
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Preference number: 2 (lower is better) Translates to: CSGHPKRKRSPGRQILQQKLSQP*VRWGLL Trigger: CAGGAGTCCCCAGCGGACCCAGGGCTGAGAAAGTTT...TTGCTGCAGGATCTGCCTTCCAGGGCTCCTTTTCCTTTTAGGGTGTCCACTGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR-3UTR TCA 90 bp | AAGCAGGAAAGGTGGATGAAGGCAGGGGGACTCCAGAGCCTACCAGGTTATTGCTGCAAACAGACCTTCTaGACTGGTGGAATCCAGAGC | + |
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Preference number: 2 (lower is better) Translates to: KQERWMKAGGLQSLPGYCCKQTF*TGGIQS Trigger: GCTCTGGATTCCACCAGTTCAGAAGGTCTGTTTGCA...GCAATAACCTGGTAGGCTCTGGAGTCCCCCTGCCTTCATCCACCTTTCCTGCTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR-3UTR CCA 90 bp | AAGACAGAGATCAGCAGTCCCAGTACACAGTGTGGCTTGGTTAGTTTCCAAGGGGCGCCGATGGTAGCGTaGGAGAGGAAGCACACAGTT | + |
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Preference number: 2 (lower is better) Translates to: KTEISSPSTQCGLVSFQGAPMVA*ERKHTV Trigger: AACTGTGTGCTTCCTCTCCCACGCTACCATCGGCGC...CCCTTGGAAACTAACCAAGCCACACTGTGTACTGGGACTGCTGATCTCTGTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR-3UTR CCA 90 bp | AAGACAGAGATCAGCAGTCCCAGTACACAGTGTGGCTTGGTTAGTTTCCAAGGGGTGTTCCCTAAAGGGTaGGGCAGATGGGGACTCTGC | + |
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Preference number: 2 (lower is better) Translates to: KTEISSPSTQCGLVSFQGVFPKG*GRWGLC Trigger: GCAGAGTCCCCATCTGCCCCACCCTTTAGGGAACAC...CCCTTGGAAACTAACCAAGCCACACTGTGTACTGGGACTGCTGATCTCTGTCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR-3UTR GCA 90 bp | AGAGGAGATGGAGGTCACAGGAGGACACAAGGCGCCGATGGTAGCGTGGGAGAGTGCAGTGAGAAGTGTTaGATCATTAATATAGGACTG | + |
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Preference number: 2 (lower is better) Translates to: RGDGGHRRTQGADGSVGECSEKC*IINIGL Trigger: CAGTCCTATATTAATGATGCAACACTTCTCACTGCA...CTCTCCCACGCTACCATCGGCGCCTTGTGTCCTCCTGTGACCTCCATCTCCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR-3UTR GCA 90 bp | AAGACAGAGATCAGCAGTCCCAGTACACAGTGTGGCTTGGTTAGTTTCCAAGGGCCTTTGCATCCAGGCTaGTCATACCCTGTTGCTCTC | + |
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Preference number: 2 (lower is better) Translates to: KTEISSPSTQCGLVSFQGPLHPG*SYPVAL Trigger: GAGAGCAACAGGGTATGAGCAGCCTGGATGCAAAGG...CCCTTGGAAACTAACCAAGCCACACTGTGTACTGGGACTGCTGATCTCTGTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR CAA 90 bp | ATAGATCACAAGACAGAGATCAGCAGTCCCAGTACACAGTGTGGCTaGGTTAGTTTCCAAGGGAACACATTAGGCAGGTTGGGCAGGCTC | + |
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Preference number: 2 (lower is better) Translates to: IDHKTEISSPSTQCG*VSFQGNTLGRLGRL Trigger: GAGCCTGCCCAACCTGCCTAATGTGTTCCCTTGGAAACTAACCAAGCCACACTGTGTACTGGGACTGCTGATCTCTGTCTTGTGATCTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR-3UTR TCA 90 bp | AAGACAGAGATCAGCAGTCCCAGTACACAGTGTGGCTTGGTTAGTTTCCAAGGGAGAGCAAGTTTCTTCTaGGAGTCCACAAAGAATAGC | + |
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Preference number: 2 (lower is better) Translates to: KTEISSPSTQCGLVSFQGRASFF*ESTKNS Trigger: GCTATTCTTTGTGGACTCTCAGAAGAAACTTGCTCT...CCCTTGGAAACTAACCAAGCCACACTGTGTACTGGGACTGCTGATCTCTGTCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR-3UTR GCA 90 bp | ACTCTCTCTCAATCCAGAGATGGGACTAGGGCTCCTCAGGAACAGAGCAGACTCTGCAGTGAGAAGTGTTaGATCATTAATATAGGACTG | + |
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Preference number: 2 (lower is better) Translates to: TLSQSRDGTRAPQEQSRLCSEKC*IINIGL Trigger: CAGTCCTATATTAATGATGCAACACTTCTCACTGCA...GAGTCTGCTCTGTTCCTGAGGAGCCCTAGTCCCATCTCTGGATTGAGAGAGAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR GCA 72 bp | CTTCTGGCCTTTGCATCCAGGCTGCTCATACCCTGTTaGTCTCTGACCCTCAGCCCCGCTGCCCCTGAACCC | + |
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Preference number: 3 (lower is better) Translates to: LLAFASRLLIPC*SLTLSPAAPEP Trigger: GGGTTCAGGGGCAGCGGGGCTGAGGGTCAGAGAGCAACAGGGTATGAGCAGCCTGGATGCAAAGGCCAGAAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR CCA 72 bp | CAAGCCTCGACATCAGTCTCTGAAGCGTCAGGTAGCTaGCCTTGGCTTCTGGAGGCTTCACGCTGGAGGCTG | + |
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Preference number: 3 (lower is better) Translates to: QASTSVSEASGS*PWLLEASRWRL Trigger: CAGCCTCCAGCGTGAAGCCTCCAGAAGCCAAGGCCAGCTACCTGACGCTTCAGAGACTGATGTCGAGGCTTG 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR TCA 72 bp | CAGAACCGTCCCCACCCTTTCCACTGCCTGTCCCCTTaGCTATCTCCTGCTAGAGACCAGCTTCGGAGAAGA | + |
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Preference number: 3 (lower is better) Translates to: QNRPHPFHCLSP*LSPARDQLRRR Trigger: TCTTCTCCGAAGCTGGTCTCTAGCAGGAGATAGTCAAGGGGACAGGCAGTGGAAAGGGTGGGGACGGTTCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR CCA 72 bp | CCCAGAGGCAAGATTTCCTGGGTGTTCCCTAAAGGGTaGGGCAGATGGGGACTCTGCAGTGGACACCCTAAA | + |
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Preference number: 3 (lower is better) Translates to: PRGKISWVFPKG*GRWGLCSGHPK Trigger: TTTAGGGTGTCCACTGCAGAGTCCCCATCTGCCCCACCCTTTAGGGAACACCCAGGAAATCTTGCCTCTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR GCA 72 bp | ATGAAGGCAGGGGGACTCCAGAGCCTACCAGGTTATTaGTCGGAAGATAAGAGAGGAGCTCGTTCCCCAGAG | + |
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Preference number: 3 (lower is better) Translates to: MKAGGLQSLPGY*SEDKRGARSPE Trigger: CTCTGGGGAACGAGCTCCTCTCTTATCTTCCGAGCAATAACCTGGTAGGCTCTGGAGTCCCCCTGCCTTCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR TCA 72 bp | GCAGGCTCCGGTGTGAGTTTCCACTCTGATGACTTTTaGCTTCTGGCCTTTGCATCCAGGCTGCTCATACCC | + |
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Preference number: 3 (lower is better) Translates to: AGSGVSFHSDDF*LLAFASRLLIP Trigger: GGGTATGAGCAGCCTGGATGCAAAGGCCAGAAGTCAAAAGTCATCAGAGTGGAAACTCACACCGGAGCCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR GCA 72 bp | GCACAGACACGGCACAGACAGGGTCCAGAGCCCGGCTaGAGTGAGAAGTGTTGCATCATTAATATAGGACTG | + |
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Preference number: 3 (lower is better) Translates to: AQTRHRQGPEPG*SEKCCIINIGL Trigger: CAGTCCTATATTAATGATGCAACACTTCTCACTGCAGCCGGGCTCTGGACCCTGTCTGTGCCGTGTCTGTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR CCA 72 bp | GAGGTCACAGGAGGACACAAGGCGCCGATGGTAGCGTaGGAGAGGAAGCACACAGTTCACAGAAACAATGAA | + |
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Preference number: 3 (lower is better) Translates to: EVTGGHKAPMVA*ERKHTVHRNNE Trigger: TTCATTGTTTCTGTGAACTGTGTGCTTCCTCTCCCACGCTACCATCGGCGCCTTGTGTCCTCCTGTGACCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR CCA 72 bp | AAGAATAGCAACAAACTTTCTCAGCCCTGGGTCCGCTaGGGACTCCTGCCCTGGGGACAACTAACTCTCTCT | + |
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Preference number: 3 (lower is better) Translates to: KNSNKLSQPWVR*GLLPWGQLTLS Trigger: AGAGAGAGTTAGTTGTCCCCAGGGCAGGAGTCCCCAGCGGACCCAGGGCTGAGAAAGTTTGTTGCTATTCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR-3UTR CAA 90 bp | AGTTTCCAAGGGAACACATTAGGCAGGTTGGGCAGGCTCCGGTGTGAGTTTCCAAGGGAACACGCATTCTaGGCTTCTCCTAGGGAAAGG | + |
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Preference number: 3 (lower is better) Translates to: SFQGNTLGRLGRLRCEFPREHAF*ASPRER Trigger: CCTTTCCCTAGGAGAAGCCAAGAATGCGTGTTCCCT...TGGAAACTCACACCGGAGCCTGCCCAACCTGCCTAATGTGTTCCCTTGGAAACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR TCA 72 bp | AGGGAACACATTAGGCAGGTTGGGCAGGCTCCGGTGTaGGTTTCCACTCTGATGACTTTTGACTTCTGGCCT | + |
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Preference number: 3 (lower is better) Translates to: REHIRQVGQAPV*VSTLMTFDFWP Trigger: AGGCCAGAAGTCAAAAGTCATCAGAGTGGAAACTCACACCGGAGCCTGCCCAACCTGCCTAATGTGTTCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR GCA 72 bp | ACCCTAAAAGGAAAAGGAGCCCTGGAAGGCAGATCCTaGAGCAATGACTCTCCAGCTGCAAACAGACCTTCT | + |
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Preference number: 3 (lower is better) Translates to: TLKGKGALEGRS*SNDSPAANRPS Trigger: AGAAGGTCTGTTTGCAGCTGGAGAGTCATTGCTGCAGGATCTGCCTTCCAGGGCTCCTTTTCCTTTTAGGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR CCA 72 bp | GCAATGACTCTCCAGCTGCAAACAGACCTTCTGAACTaGTGGAATCCAGAGCAAGTTTCTTCTGAGAGTCCA | + |
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Preference number: 3 (lower is better) Translates to: AMTLQLQTDLLN*WNPEQVSSESP Trigger: TGGACTCTCAGAAGAAACTTGCTCTGGATTCCACCAGTTCAGAAGGTCTGTTTGCAGCTGGAGAGTCATTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR CCA 72 bp | ATGACTCTCCAGCTGCAAACAGACCTTCTGAACTGGTaGAATCCAGAGCAAGTTTCTTCTGAGAGTCCACAA | + |
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Preference number: 3 (lower is better) Translates to: MTLQLQTDLLNW*NPEQVSSESPQ Trigger: TTGTGGACTCTCAGAAGAAACTTGCTCTGGATTCCACCAGTTCAGAAGGTCTGTTTGCAGCTGGAGAGTCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR TCA 72 bp | CCTTCTGAACTGGTGGAATCCAGAGCAAGTTTCTTCTaGGAGTCCACAAAGAATAGCAACAAACTTTCTCAG | + |
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Preference number: 3 (lower is better) Translates to: PSELVESRASFF*ESTKNSNKLSQ Trigger: CTGAGAAAGTTTGTTGCTATTCTTTGTGGACTCTCAGAAGAAACTTGCTCTGGATTCCACCAGTTCAGAAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| CDS-3UTR CCA 90 bp | AGACACGGCACAGACACGGCACAGACACGGCACAGACAGGGTCCAGAGCCCGGCGGCCTCTTCGTCACCTaGAGCCCTGGGCTTCTGATT | + |
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Preference number: 4 (lower is better) Translates to: RHGTDTAQTRHRQGPEPGGLFVT*SPGLLI Trigger: AATCAGAAGCCCAGGGCTCCAGGTGACGAAGAGGCC...GCCGGGCTCTGGACCCTGTCTGTGCCGTGTCTGTGCCGTGTCTGTGCCGTGTCT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| CDS-3UTR GCA 90 bp | TCCACACCACCAGGCAGAGAGACAGAACCGTCCCCACCCTTTCCACTGCCTGTCTTTCTCCTTCTCAGCTaGACTCGCCAGGACCACAGG | + |
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Preference number: 4 (lower is better) Translates to: STPPGRETEPSPPFPLPVFLLLS*TRQDHR Trigger: CCTGTGGTCCTGGCGAGTGCAGCTGAGAAGGAGAAA...GACAGGCAGTGGAAAGGGTGGGGACGGTTCTGTCTCTCTGCCTGGTGGTGTGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000085939.8 |
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| CDS-3UTR CCA 90 bp | AAGCAGGAAAGGTGGATGAAGGCAGGGGGACTCCAGAGCCTACCAGGTTATTGCGGCCTCTTCGTCACCTaGAGCCCTGGGCTTCTGATT | + |
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Preference number: 4 (lower is better) Translates to: KQERWMKAGGLQSLPGYCGLFVT*SPGLLI Trigger: AATCAGAAGCCCAGGGCTCCAGGTGACGAAGAGGCC...GCAATAACCTGGTAGGCTCTGGAGTCCCCCTGCCTTCATCCACCTTTCCTGCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| CDS-3UTR CCA 90 bp | ACTTCTGGCCTTTGCATCCAGGCTGCTCATACCCTGTTGCTCTCTGACCCTCAGCAGTTCTCTGCCTTCTaGGGCTCCGCAGCGTTTGTA | + |
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Preference number: 4 (lower is better) Translates to: TSGLCIQAAHTLLLSDPQQFSAF*GSAAFV Trigger: TACAAACGCTGCGGAGCCCCAGAAGGCAGAGAACTG...CTGAGGGTCAGAGAGCAACAGGGTATGAGCAGCCTGGATGCAAAGGCCAGAAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| CDS-3UTR CCA 90 bp | ACTCTCTCTCAATCCAGAGATGGGACTAGGGCTCCTCAGGAACAGAGCAGACTCCAGTTCTCTGCCTTCTaGGGCTCCGCAGCGTTTGTA | + |
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Preference number: 4 (lower is better) Translates to: TLSQSRDGTRAPQEQSRLQFSAF*GSAAFV Trigger: TACAAACGCTGCGGAGCCCCAGAAGGCAGAGAACTG...GAGTCTGCTCTGTTCCTGAGGAGCCCTAGTCCCATCTCTGGATTGAGAGAGAGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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| 3UTR CAA 72 bp | AAGACAGAGATCAGCAGTCCCAGTACACAGTGTGGCTaGGTTAGTTTCCAAGGGAACACATTAGGCAGGTTG | + |
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Preference number: 4 (lower is better) Translates to: KTEISSPSTQCG*VSFQGNTLGRL Trigger: CAACCTGCCTAATGTGTTCCCTTGGAAACTAACCAAGCCACACTGTGTACTGGGACTGCTGATCTCTGTCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000085939.8 ENSMUST00000217381.2 |
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