Pregenerated sensors for FXYD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059412Ensembl transcript IDs: ENSMUST00000041005.6, ENSMUST00000214466.2, ENSMUST00000216289.2
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCCATGCTGACTGTGCTGGGGTCTGTGGTGCGCAGCTGGGGAAGGTaGTCATCGCTGGTGCCCATGCACCCGTGGGCACTGCCGGCTCTT | + |
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Preference number: 1 (lower is better) Translates to: PMLTVLGSVVRSWGR*SSLVPMHPWALPAL Trigger: AAGAGCCGGCAGTGCCCACGGGTGCATGGGCACCAGCGATGACCACCTTCCCCAGCTGCGCACCACAGACCCCAGCACAGTCAGCATGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041005.6 ENSMUST00000214466.2 |
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| 3UTR CCA 90 bp | CTGTGCTGGGGTCTGTGGTGCGCAGCTGGGGAAGGTGGTCATCGCTaGTGCCCATGCACCCGTGGGCACTGCCGGCTCTTCTGTCACAGT | + |
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Preference number: 1 (lower is better) Translates to: LCWGLWCAAGEGGHR*CPCTRGHCRLFCHS Trigger: ACTGTGACAGAAGAGCCGGCAGTGCCCACGGGTGCATGGGCACCAGCGATGACCACCTTCCCCAGCTGCGCACCACAGACCCCAGCACAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR GCA 90 bp | TGCTGGGGTCTGTGGTGCGCAGCTGGGGAAGGTGGTCATCGCTGGTaGCCATGCACCCGTGGGCACTGCCGGCTCTTCTGTCACAGTTCA | + |
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Preference number: 1 (lower is better) Translates to: CWGLWCAAGEGGHRW*PCTRGHCRLFCHSS Trigger: TGAACTGTGACAGAAGAGCCGGCAGTGCCCACGGGTGCATGGGCACCAGCGATGACCACCTTCCCCAGCTGCGCACCACAGACCCCAGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR CCA 90 bp | TTCCTTCAGCCCATGCTGACTGTGCTGGGGTCTGTGGTGCGCAGCTaGGGAAGGTGGTCATCGCTGGTGCCCATGCACCCGTGGGCACTG | + |
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Preference number: 1 (lower is better) Translates to: FLQPMLTVLGSVVRS*GRWSSLVPMHPWAL Trigger: CAGTGCCCACGGGTGCATGGGCACCAGCGATGACCACCTTCCCCAGCTGCGCACCACAGACCCCAGCACAGTCAGCATGGGCTGAAGGAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041005.6 ENSMUST00000214466.2 |
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| 3UTR GCA 90 bp | GGTCTGTGGTGCGCAGCTGGGGAAGGTGGTCATCGCTGGTGCCCATaGACCCGTGGGCACTGCCGGCTCTTCTGTCACAGTTCATCTTCA | + |
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Preference number: 1 (lower is better) Translates to: GLWCAAGEGGHRWCP*TRGHCRLFCHSSSS Trigger: TGAAGATGAACTGTGACAGAAGAGCCGGCAGTGCCCACGGGTGCATGGGCACCAGCGATGACCACCTTCCCCAGCTGCGCACCACAGACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR CCA 90 bp | TCTCAGTGTGCTGAGACTACTCAAGGGATAGGGTGGCTTAGGACGTaGTGTCCAGATGGGGCGGTGCCTGCTCCCCTGGCAGCCTCTGCC | + |
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Preference number: 1 (lower is better) Translates to: SQCAETTQGIGWLRT*CPDGAVPAPLAASA Trigger: GGCAGAGGCTGCCAGGGGAGCAGGCACCGCCCCATCTGGACACCACGTCCTAAGCCACCCTATCCCTTGAGTAGTCTCAGCACACTGAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR CCA 90 bp | ACAGGCGGTGTCTCTCAGTGTGCTGAGACTACTCAAGGGATAGGGTaGCTTAGGACGTGGTGTCCAGATGGGGCGGTGCCTGCTCCCCTG | + |
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Preference number: 1 (lower is better) Translates to: TGGVSQCAETTQGIG*LRTWCPDGAVPAPL Trigger: CAGGGGAGCAGGCACCGCCCCATCTGGACACCACGTCCTAAGCCACCCTATCCCTTGAGTAGTCTCAGCACACTGAGAGACACCGCCTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR CCA 90 bp | GTGCGCAGCTGGGGAAGGTGGTCATCGCTGGTGCCCATGCACCCGTaGGCACTGCCGGCTCTTCTGTCACAGTTCATCTTCATTGACCTG | + |
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Preference number: 1 (lower is better) Translates to: VRSWGRWSSLVPMHP*ALPALLSQFIFIDL Trigger: CAGGTCAATGAAGATGAACTGTGACAGAAGAGCCGGCAGTGCCCACGGGTGCATGGGCACCAGCGATGACCACCTTCCCCAGCTGCGCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR GCA 90 bp | GCTGGGGAAGGTGGTCATCGCTGGTGCCCATGCACCCGTGGGCACTaGCGGCTCTTCTGTCACAGTTCATCTTCATTGACCTGCCTATGT | + |
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Preference number: 1 (lower is better) Translates to: AGEGGHRWCPCTRGH*RLFCHSSSSLTCLC Trigger: ACATAGGCAGGTCAATGAAGATGAACTGTGACAGAAGAGCCGGCAGTGCCCACGGGTGCATGGGCACCAGCGATGACCACCTTCCCCAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR CCA 90 bp | TCCAAGAGCCCAGCTTTCATTCAGAGTGGGAGGAGCCAGAGTGTGTaGGAATTCCAGAATACAGGATCCTCTTTGCTTCACCAAATGTCT | + |
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Preference number: 1 (lower is better) Translates to: SKSPAFIQSGRSQSV*EFQNTGSSLLHQMS Trigger: AGACATTTGGTGAAGCAAAGAGGATCCTGTATTCTGGAATTCCCACACACTCTGGCTCCTCCCACTCTGAATGAAAGCTGGGCTCTTGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR-3UTR TCA 90 bp | GATGCCTGGCACTTCCTTCAGCCCATGCTGACTGTGCTGGGGTCTGTGGTGCGCTCCTTCAGCCCATGCTaGCTGTGCTGGGGTCTGTGG | + |
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Preference number: 2 (lower is better) Translates to: DAWHFLQPMLTVLGSVVRSFSPC*LCWGLW Trigger: CCACAGACCCCAGCACAGTCAGCATGGGCTGAAGGA...GCGCACCACAGACCCCAGCACAGTCAGCATGGGCTGAAGGAAGTGCCAGGCATC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041005.6 ENSMUST00000214466.2 |
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| 3UTR-3UTR CCA 90 bp | TTGAAAACCAGGGGGATGAGGCTACACATGCTCCTCAACTTGGAACAGGGAGTGCGGTGCCTGCTCCCCTaGCAGCCTCTGCCCCACAGT | + |
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Preference number: 2 (lower is better) Translates to: LKTRGMRLHMLLNLEQGVRCLLP*QPLPHS Trigger: ACTGTGGGGCAGAGGCTGCCAGGGGAGCAGGCACCG...CACTCCCTGTTCCAAGTTGAGGAGCATGTGTAGCCTCATCCCCCTGGTTTTCAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR-3UTR CCA 90 bp | AAAACCAGGGGGATGAGGCTACACATGCTCCTCAACTTGGAACAGGGAGTGGGGGGTTCCCAGGATGCCTaGCACTTCCTTCAGCCCATG | + |
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Preference number: 2 (lower is better) Translates to: KTRGMRLHMLLNLEQGVGGSQDA*HFLQPM Trigger: CATGGGCTGAAGGAAGTGCCAGGCATCCTGGGAACC...CCCCACTCCCTGTTCCAAGTTGAGGAGCATGTGTAGCCTCATCCCCCTGGTTTT 57% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 2 transcripts: ENSMUST00000041005.6 ENSMUST00000214466.2 |
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| 3UTR-3UTR GCA 90 bp | ACTATTCATGGCTACCTTAGAACCTCCCTAAAGTACCCCTTCACCTCTGTGGCTCCTCTGCCCCACAGTTaGCCAGCCAGACTTCCCTCT | + |
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Preference number: 2 (lower is better) Translates to: TIHGYLRTSLKYPFTSVAPLPHS*PARLPS Trigger: AGAGGGAAGTCTGGCTGGGCAACTGTGGGGCAGAGG...AGCCACAGAGGTGAAGGGGTACTTTAGGGAGGTTCTAAGGTAGCCATGAATAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR-3UTR GCA 90 bp | TGCACCCGTGGGCACTGCCGGCTCTTCTGTCACAGTTCATCTTCATTGACCTGCAAGCATCTGCTATTGTaGTTACCAGGGCTCAAGGAC | + |
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Preference number: 2 (lower is better) Translates to: CTRGHCRLFCHSSSSLTCKHLLL*LPGLKD Trigger: GTCCTTGAGCCCTGGTAAGCACAATAGCAGATGCTT...GCAGGTCAATGAAGATGAACTGTGACAGAAGAGCCGGCAGTGCCCACGGGTGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR-3UTR CCA 90 bp | ACACACACACACACACACACACACACACACACACCAGATCTTCCAAGAGCCCAGAGAGTCCCCAGGCCCTaGCTTCCATCTCTGCTAGTT | + |
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Preference number: 2 (lower is better) Translates to: THTHTHTHTHTPDLPRAQRVPRP*LPSLLV Trigger: AACTAGCAGAGATGGAAGCCAGGGCCTGGGGACTCT...CTGGGCTCTTGGAAGATCTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR-3UTR TCA 90 bp | GCTTTCATTCAGAGTGGGAGGAGCCAGAGTGTGTGGGAATTCCAGAATACAGGATGTCTCTCAGTGTGCTaGGACTACTCAAGGGATAGG | + |
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Preference number: 2 (lower is better) Translates to: AFIQSGRSQSVWEFQNTGCLSVC*DYSRDR Trigger: CCTATCCCTTGAGTAGTCTCAGCACACTGAGAGACA...TCCTGTATTCTGGAATTCCCACACACTCTGGCTCCTCCCACTCTGAATGAAAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR-3UTR CCA 90 bp | ACTATTCATGGCTACCTTAGAACCTCCCTAAAGTACCCCTTCACCTCTGTGGCTACTTGGAACAGGGAGTaGGGTGTTAGAGAAGCTGGG | + |
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Preference number: 2 (lower is better) Translates to: TIHGYLRTSLKYPFTSVATWNRE*GVREAG Trigger: CCCAGCTTCTCTAACACCCCACTCCCTGTTCCAAGT...AGCCACAGAGGTGAAGGGGTACTTTAGGGAGGTTCTAAGGTAGCCATGAATAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR-3UTR CCA 90 bp | ACACACACACACACACACACACACACACACACACCAGATCTTCCAAGAGCCCAGCGAGCCCGATTTCATTaGCAGTTGCTTATACAAGGA | + |
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Preference number: 2 (lower is better) Translates to: THTHTHTHTHTPDLPRAQRARFH*QLLIQG Trigger: TCCTTGTATAAGCAACTGCCAATGAAATCGGGCTCG...CTGGGCTCTTGGAAGATCTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR GCA 72 bp | CGGTGCCTGCTCCCCTGGCAGCCTCTGCCCCACAGTTaGCCAGCCAGACTTCCCTCTCCGCTTCCCATCCCA | + |
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Preference number: 3 (lower is better) Translates to: RCLLPWQPLPHS*PARLPSPLPIP Trigger: TGGGATGGGAAGCGGAGAGGGAAGTCTGGCTGGGCAACTGTGGGGCAGAGGCTGCCAGGGGAGCAGGCACCG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR CCA 72 bp | GGTCTGTGGTGCGCAGCTGGGGAAGGTGGTCATCGCTaGTGCCCATGCACCCGTGGGCACTGCCGGCTCTTC | + |
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Preference number: 3 (lower is better) Translates to: GLWCAAGEGGHR*CPCTRGHCRLF Trigger: GAAGAGCCGGCAGTGCCCACGGGTGCATGGGCACCAGCGATGACCACCTTCCCCAGCTGCGCACCACAGACC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041005.6 ENSMUST00000214466.2 |
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| 3UTR GCA 72 bp | CTGTGGTGCGCAGCTGGGGAAGGTGGTCATCGCTGGTaGCCATGCACCCGTGGGCACTGCCGGCTCTTCTGT | + |
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Preference number: 3 (lower is better) Translates to: LWCAAGEGGHRW*PCTRGHCRLFC Trigger: ACAGAAGAGCCGGCAGTGCCCACGGGTGCATGGGCACCAGCGATGACCACCTTCCCCAGCTGCGCACCACAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR GCA 72 bp | TGCGCAGCTGGGGAAGGTGGTCATCGCTGGTGCCCATaGACCCGTGGGCACTGCCGGCTCTTCTGTCACAGT | + |
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Preference number: 3 (lower is better) Translates to: CAAGEGGHRWCP*TRGHCRLFCHS Trigger: ACTGTGACAGAAGAGCCGGCAGTGCCCACGGGTGCATGGGCACCAGCGATGACCACCTTCCCCAGCTGCGCA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214466.2 ENSMUST00000216289.2 |
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| 3UTR CCA 72 bp | TGGGGAAGGTGGTCATCGCTGGTGCCCATGCACCCGTaGGCACTGCCGGCTCTTCTGTCACAGTTCATCTTC | + |
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Preference number: 3 (lower is better) Translates to: WGRWSSLVPMHP*ALPALLSQFIF Trigger: GAAGATGAACTGTGACAGAAGAGCCGGCAGTGCCCACGGGTGCATGGGCACCAGCGATGACCACCTTCCCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214466.2 ENSMUST00000216289.2 |
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| 3UTR-3UTR CAA 90 bp | GAAAACCAGGGGGATGAGGCTACACATGCTCCTCAACTTGGAACAGGGAGTGGGGCCTCTGCCCCACAGTaGCCCAGCCAGACTTCCCTC | + |
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Preference number: 3 (lower is better) Translates to: ENQGDEATHAPQLGTGSGASAPQ*PSQTSL Trigger: GAGGGAAGTCTGGCTGGGCAACTGTGGGGCAGAGGC...CCCACTCCCTGTTCCAAGTTGAGGAGCATGTGTAGCCTCATCCCCCTGGTTTTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR GCA 72 bp | AGGCAGGAGGGGATGACCATGAAGGGGTTCCCAGGATaGCTGGCACTTCCTTCAGCCCATGCTGACTGTGCT | + |
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Preference number: 3 (lower is better) Translates to: RQEGMTMKGFPG*LALPSAHADCA Trigger: AGCACAGTCAGCATGGGCTGAAGGAAGTGCCAGGCATCCTGGGAACCCCTTCATGGTCATCCCCTCCTGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041005.6 ENSMUST00000214466.2 |
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| 3UTR GCA 72 bp | GGTGGTCATCGCTGGTGCCCATGCACCCGTGGGCACTaGCGGCTCTTCTGTCACAGTTCATCTTCATTGACC | + |
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Preference number: 3 (lower is better) Translates to: GGHRWCPCTRGH*RLFCHSSSSLT Trigger: GGTCAATGAAGATGAACTGTGACAGAAGAGCCGGCAGTGCCCACGGGTGCATGGGCACCAGCGATGACCACC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR TCA 72 bp | TCTCTCCCTGCGAGTCTCACTGTCCATCTCAAACGCTaGCAGTGGGGCTACAGGCGGTGTCTCTCAGTGTGC | + |
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Preference number: 3 (lower is better) Translates to: SLPASLTVHLKR*QWGYRRCLSVC Trigger: GCACACTGAGAGACACCGCCTGTAGCCCCACTGTCAGCGTTTGAGATGGACAGTGAGACTCGCAGGGAGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR TCA 72 bp | GGCACTGCCGGCTCTTCTGTCACAGTTCATCTTCATTaGCCTGCCTATGTTTCTTACCGCCCCCACAGCGGA | + |
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Preference number: 3 (lower is better) Translates to: GTAGSSVTVHLH*PAYVSYRPHSG Trigger: TCCGCTGTGGGGGCGGTAAGAAACATAGGCAGGTCAATGAAGATGAACTGTGACAGAAGAGCCGGCAGTGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR GCA 72 bp | TCTGCTACACCGAGAGAGCTGCTACAAGTCTCTCCCTaGGAGTCTCACTGTCCATCTCAAACGCTGACAGTG | + |
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Preference number: 3 (lower is better) Translates to: SATPRELLQVSP*ESHCPSQTLTV Trigger: CACTGTCAGCGTTTGAGATGGACAGTGAGACTCGCAGGGAGAGACTTGTAGCAGCTCTCTCGGTGTAGCAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR CCA 72 bp | CCCTGGCTTCCATCTCTGCTAGTTTGCAGCAATATGTaGAGGAGTGGATGTCTGCTACACCGAGAGAGCTGC | + |
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Preference number: 3 (lower is better) Translates to: PWLPSLLVCSNM*RSGCLLHRESC Trigger: GCAGCTCTCTCGGTGTAGCAGACATCCACTCCTCCACATATTGCTGCAAACTAGCAGAGATGGAAGCCAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR GCA 72 bp | TGCCGGCTCTTCTGTCACAGTTCATCTTCATTGACCTaGCTATGTTTCTTACCGCCCCCACAGCGGAACCTT | + |
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Preference number: 3 (lower is better) Translates to: CRLFCHSSSSLT*LCFLPPPQRNL Trigger: AAGGTTCCGCTGTGGGGGCGGTAAGAAACATAGGCAGGTCAATGAAGATGAACTGTGACAGAAGAGCCGGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR CCA 72 bp | CACCAGATCTTCCAAGAGCCCAGCTTTCATTCAGAGTaGGAGGAGCCAGAGTGTGTGGGAATTCCAGAATAC | + |
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Preference number: 3 (lower is better) Translates to: HQIFQEPSFHSE*EEPECVGIPEY Trigger: GTATTCTGGAATTCCCACACACTCTGGCTCCTCCCACTCTGAATGAAAGCTGGGCTCTTGGAAGATCTGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR CCA 72 bp | TCAACAAATAGTCACTGCACCAGATCTGTGCTGGACTaGGGACATGTTGTAAGTGGCCACTGGGACCAGAGT | + |
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Preference number: 3 (lower is better) Translates to: STNSHCTRSVLD*GHVVSGHWDQS Trigger: ACTCTGGTCCCAGTGGCCACTTACAACATGTCCCCAGTCCAGCACAGATCTGGTGCAGTGACTATTTGTTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR CCA 72 bp | TCCATCTCTGCTAGTTTGCAGCAATATGTGGAGGAGTaGATGTCTGCTACACCGAGAGAGCTGCTACAAGTC | + |
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Preference number: 3 (lower is better) Translates to: SISASLQQYVEE*MSATPRELLQV Trigger: GACTTGTAGCAGCTCTCTCGGTGTAGCAGACATCCACTCCTCCACATATTGCTGCAAACTAGCAGAGATGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR CCA 72 bp | CCAGCTTTCATTCAGAGTGGGAGGAGCCAGAGTGTGTaGGAATTCCAGAATACAGGATCCTCTTTGCTTCAC | + |
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Preference number: 3 (lower is better) Translates to: PAFIQSGRSQSV*EFQNTGSSLLH Trigger: GTGAAGCAAAGAGGATCCTGTATTCTGGAATTCCCACACACTCTGGCTCCTCCCACTCTGAATGAAAGCTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR CAA 72 bp | GCGGTGCCTGCTCCCCTGGCAGCCTCTGCCCCACAGTaGCCCAGCCAGACTTCCCTCTCCGCTTCCCATCCC | + |
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Preference number: 4 (lower is better) Translates to: AVPAPLAASAPQ*PSQTSLSASHP Trigger: GGGATGGGAAGCGGAGAGGGAAGTCTGGCTGGGCAACTGTGGGGCAGAGGCTGCCAGGGGAGCAGGCACCGC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| CDS-3UTR CCA 90 bp | TGGTCATCGCTGGTGCCCATGCACCCGTGGGCACTGCCGGCTCTTCTGTCACAGGATTCTCTGTCCCCTTaGCACTGCCACCCAGGTACC | + |
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Preference number: 4 (lower is better) Translates to: WSSLVPMHPWALPALLSQDSLSP*HCHPGT Trigger: GGTACCTGGGTGGCAGTGCCAAGGGGACAGAGAATC...CTGTGACAGAAGAGCCGGCAGTGCCCACGGGTGCATGGGCACCAGCGATGACCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214466.2 ENSMUST00000216289.2 |
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| CDS-3UTR GCA 90 bp | TGTGGTGCGCAGCTGGGGAAGGTGGTCATCGCTGGTGCCCATGCACCCGTGGGCTCATCTTCATTGACCTaGCTATGTTTCTTACCGCCC | + |
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Preference number: 4 (lower is better) Translates to: CGAQLGKVVIAGAHAPVGSSSLT*LCFLPP Trigger: GGGCGGTAAGAAACATAGGCAGGTCAATGAAGATGA...GCCCACGGGTGCATGGGCACCAGCGATGACCACCTTCCCCAGCTGCGCACCACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041005.6 |
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| CDS-3UTR GCA 90 bp | GTGCGCAGCTGGGGAAGGTGGTCATCGCTGGTGCCCATGCACCCGTGGGCACTGTATGACTTTGGGAAATaGTCCATCTGTCCCCACTTA | + |
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Preference number: 4 (lower is better) Translates to: VRSWGRWSSLVPMHPWALYDFGK*SICPHL Trigger: TAAGTGGGGACAGATGGAGCATTTCCCAAAGTCATA...CAGTGCCCACGGGTGCATGGGCACCAGCGATGACCACCTTCCCCAGCTGCGCAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| CDS-3UTR CCA 90 bp | TGCACCCGTGGGCACTGCCGGCTCTTCTGTCACAGTTCATCTTCATTGACCTGCGATTCTCTGTCCCCTTaGCACTGCCACCCAGGTACC | + |
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Preference number: 4 (lower is better) Translates to: CTRGHCRLFCHSSSSLTCDSLSP*HCHPGT Trigger: GGTACCTGGGTGGCAGTGCCAAGGGGACAGAGAATC...GCAGGTCAATGAAGATGAACTGTGACAGAAGAGCCGGCAGTGCCCACGGGTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| 3UTR CAA 72 bp | GGGCACTGCCGGCTCTTCTGTCACAGTTCATCTTCATaGACCTGCCTATGTTTCTTACCGCCCCCACAGCGG | + |
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Preference number: 4 (lower is better) Translates to: GHCRLFCHSSSS*TCLCFLPPPQR Trigger: CCGCTGTGGGGGCGGTAAGAAACATAGGCAGGTCAATGAAGATGAACTGTGACAGAAGAGCCGGCAGTGCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| CDS-3UTR CCA 90 bp | TTGAAAACCAGGGGGATGAGGCTACACATGCTCCTCAACTTGGAACAGGGAGTGGATTCTCTGTCCCCTTaGCACTGCCACCCAGGTACC | + |
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Preference number: 4 (lower is better) Translates to: LKTRGMRLHMLLNLEQGVDSLSP*HCHPGT Trigger: GGTACCTGGGTGGCAGTGCCAAGGGGACAGAGAATC...CACTCCCTGTTCCAAGTTGAGGAGCATGTGTAGCCTCATCCCCCTGGTTTTCAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000041005.6 ENSMUST00000214466.2 |
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| CDS-3UTR TCA 90 bp | TGCCTGGCACTTCCTTCAGCCCATGCTGACTGTGCTGGGGTCTGTGGTGCGCAGACAGTTCATCTTCATTaGCCTGCCTATGTTTCTTAC | + |
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Preference number: 4 (lower is better) Translates to: CLALPSAHADCAGVCGAQTVHLH*PAYVSY Trigger: GTAAGAAACATAGGCAGGTCAATGAAGATGAACTGT...CTGCGCACCACAGACCCCAGCACAGTCAGCATGGGCTGAAGGAAGTGCCAGGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041005.6 |
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| 3UTR CAA 72 bp | CCCGATTTCATTGGCAGTTGCTTATACAAGGATTCATaGAAAACCAGGGGGATGAGGCTACACATGCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: PDFIGSCLYKDS*KTRGMRLHMLL Trigger: GAGGAGCATGTGTAGCCTCATCCCCCTGGTTTTCAATGAATCCTTGTATAAGCAACTGCCAATGAAATCGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000041005.6 ENSMUST00000214466.2 |
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| CDS-3UTR CAA 90 bp | CTGGGGAAGGTGGTCATCGCTGGTGCCCATGCACCCGTGGGCACTGCCGGCTCTGGATTCTCTGTCCCCTaGGCACTGCCACCCAGGTAC | + |
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Preference number: 5 (lower is better) Translates to: LGKVVIAGAHAPVGTAGSGFSVP*ALPPRY Trigger: GTACCTGGGTGGCAGTGCCAAGGGGACAGAGAATCC...AGAGCCGGCAGTGCCCACGGGTGCATGGGCACCAGCGATGACCACCTTCCCCAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000041005.6 ENSMUST00000214466.2 ENSMUST00000216289.2 |
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| CDS-3UTR CAA 90 bp | GCTGGGGAAGGTGGTCATCGCTGGTGCCCATGCACCCGTGGGCACTGCCGGCTCCCACAGCGGAACCTTTaGCTGAGAATGATGAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: AGEGGHRWCPCTRGHCRLPQRNL*LRMMRR Trigger: CCTCCTCATCATTCTCAGCAAAAGGTTCCGCTGTGG...GAGCCGGCAGTGCCCACGGGTGCATGGGCACCAGCGATGACCACCTTCCCCAGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041005.6 ENSMUST00000216289.2 |
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| CDS-3UTR CAA 90 bp | GATGCCTGGCACTTCCTTCAGCCCATGCTGACTGTGCTGGGGTCTGTGGTGCGCGGATTCTCTGTCCCCTaGGCACTGCCACCCAGGTAC | + |
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Preference number: 5 (lower is better) Translates to: DAWHFLQPMLTVLGSVVRGFSVP*ALPPRY Trigger: GTACCTGGGTGGCAGTGCCAAGGGGACAGAGAATCC...GCGCACCACAGACCCCAGCACAGTCAGCATGGGCTGAAGGAAGTGCCAGGCATC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000041005.6 ENSMUST00000214466.2 |
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| CDS-3UTR CAA 90 bp | GGTGCGCAGCTGGGGAAGGTGGTCATCGCTGGTGCCCATGCACCCGTGGGCACTCCACAGCGGAACCTTTaGCTGAGAATGATGAGGAGG | + |
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Preference number: 5 (lower is better) Translates to: GAQLGKVVIAGAHAPVGTPQRNL*LRMMRR Trigger: CCTCCTCATCATTCTCAGCAAAAGGTTCCGCTGTGG...AGTGCCCACGGGTGCATGGGCACCAGCGATGACCACCTTCCCCAGCTGCGCACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000041005.6 ENSMUST00000216289.2 |
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| CDS-3UTR CAA 90 bp | CCCATGCACCCGTGGGCACTGCCGGCTCTTCTGTCACAGTTCATCTTCATTGACGGATTCTCTGTCCCCTaGGCACTGCCACCCAGGTAC | + |
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Preference number: 5 (lower is better) Translates to: PMHPWALPALLSQFIFIDGFSVP*ALPPRY Trigger: GTACCTGGGTGGCAGTGCCAAGGGGACAGAGAATCC...GTCAATGAAGATGAACTGTGACAGAAGAGCCGGCAGTGCCCACGGGTGCATGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000214466.2 ENSMUST00000216289.2 |
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| CDS GCA 90 bp | TGGGTGGGGACCTGGCAAGTGTCCTTACGGTATGACTTTGGGAAATaGTCCATCTGTCCCCACTTACTGAGAATGATGAGGAGGCCCACG | + |
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Preference number: 5 (lower is better) Translates to: WVGTWQVSLRYDFGK*SICPHLLRMMRRPT Trigger: CGTGGGCCTCCTCATCATTCTCAGTAAGTGGGGACAGATGGAGCATTTCCCAAAGTCATACCGTAAGGACACTTGCCAGGTCCCCACCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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| CDS GCA 72 bp | CGACGAAGGCCAGGCCCGCGAAGATCAGGCCTCCTTTaGGGACGGTTTCATAGTCGTACTCGAAGGGATTCT | + |
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Preference number: 6 (lower is better) Translates to: RRRPGPRRSGLL*GRFHSRTRRDS Trigger: AGAATCCCTTCGAGTACGACTATGAAACCGTCCGCAAAGGAGGCCTGATCTTCGCGGGCCTGGCCTTCGTCG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000041005.6 ENSMUST00000214466.2 ENSMUST00000216289.2 |
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| CDS CAA 72 bp | TACCTATGTTTCTTACCGCCCCCACAGCGGAACCTTTaGCTGAGAATGATGAGGAGGCCCACGACGAAGGCC | + |
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Preference number: 6 (lower is better) Translates to: YLCFLPPPQRNL*LRMMRRPTTKA Trigger: GGCCTTCGTCGTGGGCCTCCTCATCATTCTCAGCAAAAGGTTCCGCTGTGGGGGCGGTAAGAAACATAGGTA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000216289.2 |
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| CDS GCA 72 bp | ACCTGGCAAGTGTCCTTACGGTATGACTTTGGGAAATaGTCCATCTGTCCCCACTTACTGAGAATGATGAGG | + |
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Preference number: 6 (lower is better) Translates to: TWQVSLRYDFGK*SICPHLLRMMR Trigger: CCTCATCATTCTCAGTAAGTGGGGACAGATGGAGCATTTCCCAAAGTCATACCGTAAGGACACTTGCCAGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000214466.2 |
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