Pregenerated sensors for FXR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027680Ensembl transcript IDs: ENSMUST00000001620.13, ENSMUST00000167354.8, ENSMUST00000198051.5, ENSMUST00000200086.5, ENSMUST00000200392.5
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CCTTTCTCTCTTTCAGGCCCTCTGGTGGAAGAAGGTCTGAAACCCATACCAATCTCCAAATGGAGGAACTaGAAGTGCGATGTAAGACTG | + |
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Preference number: 2 (lower is better) Translates to: PFSLSGPLVEEGLKPIPISKWRN*KCDVRL Trigger: CAGTCTTACATCGCACTTTCAGTTCCTCCATTTGGA...GATTGGTATGGGTTTCAGACCTTCTTCCACCAGAGGGCCTGAAAGAGAGAAAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200086.5 |
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| 3UTR-3UTR CCA 90 bp | CCTTTCTCTCTTTCAGGCCCTCTGGTGGAAGAAGGTCTGAAACCCATACCAATCTCACAGTTGCTTCACTaGCCGACAGTATCATTAGCT | + |
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Preference number: 2 (lower is better) Translates to: PFSLSGPLVEEGLKPIPISQLLH*PTVSLA Trigger: AGCTAATGATACTGTCGGCCAGTGAAGCAACTGTGA...GATTGGTATGGGTTTCAGACCTTCTTCCACCAGAGGGCCTGAAAGAGAGAAAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200086.5 |
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| 3UTR-3UTR GCA 90 bp | TTCAGGCCCTCTGGTGGAAGAAGGTCTGAAACCCATACCAATCTGTCGCAGCTGTACTCTAGAAGAACTTaGACATTCCCAATGCTTTCT | + |
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Preference number: 2 (lower is better) Translates to: FRPSGGRRSETHTNLSQLYSRRT*TFPMLS Trigger: AGAAAGCATTGGGAATGTGCAAGTTCTTCTAGAGTA...CAGCTGCGACAGATTGGTATGGGTTTCAGACCTTCTTCCACCAGAGGGCCTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200086.5 |
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| 3UTR-3UTR TCA 90 bp | AGCCAAAGTTTCCCTTGGGAGGTTTCTTTGTCTGCTCTGAGACTCAGCTCTAGAAAGCAGCATATTCAATaGCATAAAACTCGCCTTTCA | + |
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Preference number: 2 (lower is better) Translates to: SQSFPWEVSLSALRLSSRKQHIQ*HKTRLS Trigger: TGAAAGGCGAGTTTTATGTCATTGAATATGCTGCTT...TCTAGAGCTGAGTCTCAGAGCAGACAAAGAAACCTCCCAAGGGAAACTTTGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200086.5 |
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| 3UTR CAA 90 bp | CATTTCTTTCTTGTTTTTAGCCAAAGTTTCCCTTGGGAGGTTTCTTaGTCTGCTCTGAGACTCAGCTCTAGAAATATAATCTGCAACTGT | + |
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Preference number: 2 (lower is better) Translates to: HFFLVFSQSFPWEVS*SALRLSSRNIICNC Trigger: ACAGTTGCAGATTATATTTCTAGAGCTGAGTCTCAGAGCAGACAAAGAAACCTCCCAAGGGAAACTTTGGCTAAAAACAAGAAAGAAATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000200086.5 |
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| 3UTR-3UTR TCA 90 bp | GCCAAAACCTTAAGTGTTAAGATTCTGGAGGGTTCATTACAAATGATTAAATGGCAGTATCCCTGCAGATaGGTTAACATGTATTTCCAG | + |
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Preference number: 2 (lower is better) Translates to: AKTLSVKILEGSLQMIKWQYPCR*VNMYFQ Trigger: CTGGAAATACATGTTAACTCATCTGCAGGGATACTG...CCATTTAATCATTTGTAATGAACCCTCCAGAATCTTAACACTTAAGGTTTTGGC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200392.5 |
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| 3UTR-3UTR CAA 90 bp | GCCAAAACCTTAAGTGTTAAGATTCTGGAGGGTTCATTACAAATGATTAAATGGCAGTGGTCTGCAGAATaGCCTCTACAAACAGCATTT | + |
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Preference number: 3 (lower is better) Translates to: AKTLSVKILEGSLQMIKWQWSAE*PLQTAF Trigger: AAATGCTGTTTGTAGAGGCAATTCTGCAGACCACTG...CCATTTAATCATTTGTAATGAACCCTCCAGAATCTTAACACTTAAGGTTTTGGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200392.5 |
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| CDS-3UTR CCA 90 bp | TTCAGGCCCTCTGGTGGAAGAAGGTCTGAAACCCATACCAATCTGTCGCAGCTGTGTAGAAAGCCCCGTTaGAGCCGCGAACCTCCACCG | + |
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Preference number: 4 (lower is better) Translates to: FRPSGGRRSETHTNLSQLCRKPR*SREPPP Trigger: CGGTGGAGGTTCGCGGCTCCAACGGGGCTTTCTACA...CAGCTGCGACAGATTGGTATGGGTTTCAGACCTTCTTCCACCAGAGGGCCTGAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200086.5 |
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| CDS-3UTR CCA 90 bp | CGCGGTAGCTTAGGAATTTCATCGCCAGAAGCGCTAGTTGGACCATTTATTGCCTGTAGAAAGCCCCGTTaGAGCCGCGAACCTCCACCG | + |
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Preference number: 4 (lower is better) Translates to: RGSLGISSPEALVGPFIACRKPR*SREPPP Trigger: CGGTGGAGGTTCGCGGCTCCAACGGGGCTTTCTACA...GGCAATAAATGGTCCAACTAGCGCTTCTGGCGATGAAATTCCTAAGCTACCGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000198051.5 ENSMUST00000200086.5 ENSMUST00000200392.5 |
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| CDS-3UTR TCA 90 bp | CGCGGTAGCTTAGGAATTTCATCGCCAGAAGCGCTAGTTGGACCATTTATTGCCTGGTGGAAGAAGGTCTaGAACCCATACCAATCTGTC | + |
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Preference number: 4 (lower is better) Translates to: RGSLGISSPEALVGPFIAWWKKV*NPYQSV Trigger: GACAGATTGGTATGGGTTTCAGACCTTCTTCCACCA...GGCAATAAATGGTCCAACTAGCGCTTCTGGCGATGAAATTCCTAAGCTACCGCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198051.5 |
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| CDS-3UTR CCA 90 bp | TCTGAAAAGCAATCAAAGAATGCTATCTATTCTCGGCCTGTAAGTACTCCTACCTGTAGAAAGCCCCGTTaGAGCCGCGAACCTCCACCG | + |
|
Preference number: 4 (lower is better) Translates to: SEKQSKNAIYSRPVSTPTCRKPR*SREPPP Trigger: CGGTGGAGGTTCGCGGCTCCAACGGGGCTTTCTACA...GGTAGGAGTACTTACAGGCCGAGAATAGATAGCATTCTTTGATTGCTTTTCAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000200392.5 |
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| CDS-3UTR CCA 90 bp | CGCGGTAGCTTAGGAATTTCATCGCCAGAAGCGCTAGTTGGACCATTTATTGCCGTGAGGGAGTCTTCGTaGACATCTTTGATAAATCCC | + |
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Preference number: 4 (lower is better) Translates to: RGSLGISSPEALVGPFIAVRESS*TSLINP Trigger: GGGATTTATCAAAGATGTCCACGAAGACTCCCTCAC...GGCAATAAATGGTCCAACTAGCGCTTCTGGCGATGAAATTCCTAAGCTACCGCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000198051.5 ENSMUST00000200086.5 ENSMUST00000200392.5 |
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| CDS-3UTR CCA 90 bp | CCTTTCTCTCTTTCAGGCCCTCTGGTGGAAGAAGGTCTGAAACCCATACCAATCGTGAGGGAGTCTTCGTaGACATCTTTGATAAATCCC | + |
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Preference number: 4 (lower is better) Translates to: PFSLSGPLVEEGLKPIPIVRESS*TSLINP Trigger: GGGATTTATCAAAGATGTCCACGAAGACTCCCTCAC...GATTGGTATGGGTTTCAGACCTTCTTCCACCAGAGGGCCTGAAAGAGAGAAAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000200086.5 |
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| CDS-3UTR CCA 90 bp | CGCGGTAGCTTAGGAATTTCATCGCCAGAAGCGCTAGTTGGACCATTTATTGCCTCACAGTTGCTTCACTaGCCGACAGTATCATTAGCT | + |
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Preference number: 4 (lower is better) Translates to: RGSLGISSPEALVGPFIASQLLH*PTVSLA Trigger: AGCTAATGATACTGTCGGCCAGTGAAGCAACTGTGA...GGCAATAAATGGTCCAACTAGCGCTTCTGGCGATGAAATTCCTAAGCTACCGCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000167354.8 ENSMUST00000198051.5 ENSMUST00000200392.5 |
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| CDS-3UTR CCA 90 bp | CGCGGTAGCTTAGGAATTTCATCGCCAGAAGCGCTAGTTGGACCATTTATTGCCCGGAACCTGGCGTTCTaGTTGCCAATTATTTTCAAA | + |
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Preference number: 4 (lower is better) Translates to: RGSLGISSPEALVGPFIARNLAF*LPIIFK Trigger: TTTGAAAATAATTGGCAACCAGAACGCCAGGTTCCG...GGCAATAAATGGTCCAACTAGCGCTTCTGGCGATGAAATTCCTAAGCTACCGCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000198051.5 ENSMUST00000200392.5 |
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| CDS-3UTR TCA 90 bp | CGCGGTAGCTTAGGAATTTCATCGCCAGAAGCGCTAGTTGGACCATTTATTGCCAAGCAGCATATTCAATaGCATAAAACTCGCCTTTCA | + |
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Preference number: 4 (lower is better) Translates to: RGSLGISSPEALVGPFIAKQHIQ*HKTRLS Trigger: TGAAAGGCGAGTTTTATGTCATTGAATATGCTGCTT...GGCAATAAATGGTCCAACTAGCGCTTCTGGCGATGAAATTCCTAAGCTACCGCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000167354.8 ENSMUST00000198051.5 ENSMUST00000200392.5 |
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| CDS-3UTR GCA 90 bp | CGCGGTAGCTTAGGAATTTCATCGCCAGAAGCGCTAGTTGGACCATTTATTGCCTACTCTAGAAGAACTTaGACATTCCCAATGCTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: RGSLGISSPEALVGPFIAYSRRT*TFPMLS Trigger: AGAAAGCATTGGGAATGTGCAAGTTCTTCTAGAGTA...GGCAATAAATGGTCCAACTAGCGCTTCTGGCGATGAAATTCCTAAGCTACCGCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000167354.8 ENSMUST00000198051.5 ENSMUST00000200392.5 |
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| 3UTR CAA 72 bp | CTTGTTTTTAGCCAAAGTTTCCCTTGGGAGGTTTCTTaGTCTGCTCTGAGACTCAGCTCTAGAAATATAATC | + |
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Preference number: 4 (lower is better) Translates to: LVFSQSFPWEVS*SALRLSSRNII Trigger: GATTATATTTCTAGAGCTGAGTCTCAGAGCAGACAAAGAAACCTCCCAAGGGAAACTTTGGCTAAAAACAAG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000200086.5 |
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| CDS-3UTR GCA 90 bp | TCTGAAAAGCAATCAAAGAATGCTATCTATTCTCGGCCTGTAAGTACTCCTACCTACTCTAGAAGAACTTaGACATTCCCAATGCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: SEKQSKNAIYSRPVSTPTYSRRT*TFPMLS Trigger: AGAAAGCATTGGGAATGTGCAAGTTCTTCTAGAGTA...GGTAGGAGTACTTACAGGCCGAGAATAGATAGCATTCTTTGATTGCTTTTCAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200392.5 |
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| CDS-3UTR CAA 90 bp | CGCGGTAGCTTAGGAATTTCATCGCCAGAAGCGCTAGTTGGACCATTTATTGCCTTGCTGTCTGGATCTTaGAGCACAGAACTGATGGAG | + |
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Preference number: 5 (lower is better) Translates to: RGSLGISSPEALVGPFIALLSGS*STELME Trigger: CTCCATCAGTTCTGTGCTCAAAGATCCAGACAGCAA...GGCAATAAATGGTCCAACTAGCGCTTCTGGCGATGAAATTCCTAAGCTACCGCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000167354.8 ENSMUST00000198051.5 ENSMUST00000200392.5 |
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| CDS-3UTR CAA 90 bp | CGCGGTAGCTTAGGAATTTCATCGCCAGAAGCGCTAGTTGGACCATTTATTGCCATAAGACCTAGAACCTaGTACAGAAGAGACGGTACT | + |
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Preference number: 5 (lower is better) Translates to: RGSLGISSPEALVGPFIAIRPRT*YRRDGT Trigger: AGTACCGTCTCTTCTGTACAAGGTTCTAGGTCTTAT...GGCAATAAATGGTCCAACTAGCGCTTCTGGCGATGAAATTCCTAAGCTACCGCG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000198051.5 |
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| CDS-3UTR CAA 90 bp | TCTGAAAAGCAATCAAAGAATGCTATCTATTCTCGGCCTGTAAGTACTCCTACCTTGCTGTCTGGATCTTaGAGCACAGAACTGATGGAG | + |
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Preference number: 5 (lower is better) Translates to: SEKQSKNAIYSRPVSTPTLLSGS*STELME Trigger: CTCCATCAGTTCTGTGCTCAAAGATCCAGACAGCAA...GGTAGGAGTACTTACAGGCCGAGAATAGATAGCATTCTTTGATTGCTTTTCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000200392.5 |
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| CDS GCA 72 bp | AATATAATCTGCAACTGTGACTGGCTGTCTATCTTCTaGCTGACCCCTGAAACGACGCCTGCGGCTACGATT | + |
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Preference number: 6 (lower is better) Translates to: NIICNCDWLSIF*LTPETTPAATI Trigger: AATCGTAGCCGCAGGCGTCGTTTCAGGGGTCAGGCAGAAGATAGACAGCCAGTCACAGTTGCAGATTATATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001620.13 |
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